Citrus Sinensis ID: 010292

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
MKRVWKLSDAAQTELLLQRLQrhsskpktlpplsvftltkspnhsftrdlcapathtvFPTLVRLLSEtltypdarvrKDLTQTVSALRDELLANVDDLDKVFRVLDEKgsclfrrhsnGYAFVELMKQLGSRPRLALEVLNWRrrqagygtpmtkeeytKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKkeanispsivTYNTLISVFGRLLLVDHMEAAFQeikdsnlspnvftYNYLIAGYMTAWMWGKVEEIYQMMkagpvmpdtnTYLLLLRGyahsgnlprMEKIYELVKhhvdgkefPLIRAMICAYSKCSVTDRIKKIEALMRLipekeyrpWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMckngydvpvnafps
Flexible Loop (DISEMBL)
mkrvwklsDAAQTELLLQRlqrhsskpktlpplsVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSEtltypdarvrkDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWrrrqagygtpmtkeeytKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEanispsivtYNTLISVFGRLLLVDHMEAAFqeikdsnlspnVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMrlipekeyrpwlnVLLIRVYAKEDCLEEMEKSIndafehktsvttVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEnykidcskkTFWIMYYAYATCGQRRKVNQVLGLMCKngydvpvnafps
Low Complexity Region (SEG)
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Disordered region (IsUnstruct)
**********************************VFTLTK*PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV*****
Disordered Region (DISOPRED)
*********A****LLLQRLQRHSS*PKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Disordered Region (DISEMBL)
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Disordered Region (DISPRO)
***VWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
O49343	452	Pentatricopeptide repeat-	yes	no	0.826	0.938	0.558	1e-138
Q9ZU88	481	Pentatricopeptide repeat-	no	no	0.896	0.956	0.472	1e-117
Q9FKC3	508	Pentatricopeptide repeat-	no	no	0.838	0.846	0.244	3e-21
Q9SQU6	486	Pentatricopeptide repeat-	no	no	0.723	0.763	0.235	8e-18
Q9SV96	563	Pentatricopeptide repeat-	no	no	0.754	0.687	0.218	3e-17
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.697	0.437	0.208	1e-16
Q9SCP4	447	Pentatricopeptide repeat-	no	no	0.715	0.821	0.241	9e-16
O22714	491	Pentatricopeptide repeat-	no	no	0.477	0.498	0.262	4e-14
Q9S7Q2	862	Pentatricopeptide repeat-	no	no	0.754	0.448	0.213	2e-13
Q9LW84	642	Pentatricopeptide repeat-	no	no	0.660	0.528	0.208	2e-13

>sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1

 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/424 (55%), Positives = 302/424 (71%)

Query: 80  DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
           DL Q VS L+DELL   +  +K   VLD+KG  LFR + +G   +ELM QL  R  LAL+
Sbjct: 28  DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87

Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           VL WRR Q  Y  P+T EEY KGIK AGR  +++LA  LF EAA K ++T   YN+L+  
Sbjct: 88  VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++   L P
Sbjct: 148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N  TYN+LIAGYMTAW W K+E  +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct: 208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
           E++K  V     PL+RAMICAY K +V DR++KIE L+ L+  +EY PWLNVLLIR+YA+
Sbjct: 268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
           ED +E ME  IN+AFE KT V    IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct: 328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYH K++MY SQ+R EEME V+ EM         KTF IM  AY   G      +V G M
Sbjct: 388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447

Query: 500 CKNG 503
            K G
Sbjct: 448 LKRG 451

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU88|PP204_ARATH Pentatricopeptide repeat-containing protein At2g48000 OS=Arabidopsis thaliana GN=At2g48000 PE=2 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/510 (47%), Positives = 316/510 (61%), Gaps = 50/510 (9%)

Query: 2   KRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPT 61
           KR+W++S  +Q   LL   +  SS  KTL P   FTL++SP H    D            
Sbjct: 3   KRMWRISLISQISDLLCLSRGSSSTLKTLTPF-CFTLSRSPFHQSGGD------------ 49

Query: 62  LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
                       DA          S L+++LL   +D  KV  VL+       R    G 
Sbjct: 50  -----------DDA----------SGLKNQLLRFRNDSGKVASVLE-------RNKIQGA 81

Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
           AFVEL++QL   P L+  V +WRR +A   G PMT +EY KGI  +GR+ NVDLA  LF 
Sbjct: 82  AFVELLRQLRPWPVLSQLVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLFH 141

Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN----ISPSIVTYNTLISVF 236
           E+ANK   T   YNAL+GAY+ NGLS  C+ LF D   + +     +PS+ TYN LIS++
Sbjct: 142 ESANK---TTSVYNALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLY 198

Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
           GRL++V+ ME+ F +++  N+ P+  TYN LIAGY+ AW W K+E  +  MK G V P  
Sbjct: 199 GRLIMVERMESVFLQLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTL 258

Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
            TYLL+LRGYA+SGNL RME +Y+ VK HVD  E  LI +MICAY +    DRI+KI+ L
Sbjct: 259 ATYLLMLRGYANSGNLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTL 318

Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
            +LIP+K Y+PWL +LL++VYAK+D L  ME  I+ A      + T  IMR IV+SYFRC
Sbjct: 319 SKLIPKKSYKPWLYLLLMQVYAKDDNLHAMENFIDQAITKGLQIETDGIMRSIVASYFRC 378

Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
           NAVDKLA FV+RA SAGW++ RS++H  M+MY SQ+R +EME+VL EME++KI  SKKT 
Sbjct: 379 NAVDKLAKFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEMESFKISRSKKTL 438

Query: 477 WIMYYAY-ATCGQRRKVNQVLGLMCKNGYD 505
            I+   Y AT GQ  KVNQV G+M K+G+D
Sbjct: 439 CILLRVYAATHGQEHKVNQVAGMMLKHGHD 468

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 198/474 (41%), Gaps = 44/474 (9%)

Query: 63  VRLLSETLTYPDARVRKDLTQTVS-ALRD----ELLANVDDL----------DKVFRVLD 107
           VR +S +   P+  +  D +   S +LR+    + L N +D+          DK  ++  
Sbjct: 27  VRCISISPREPNYAITSDKSNNTSLSLRETRQSKWLINAEDVNERDSKEIKEDKNTKIAS 86

Query: 108 EKGSCLFRRHSNGYAFVELMKQLGSR---PRLALEVLNWRRRQAGYGTPMTKEE------ 158
            K   +  R     + +E  K+ GS+   PR  LE L+ R     + + +   E      
Sbjct: 87  RKAISIILRREATKSIIE--KKKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQL 144

Query: 159 --------YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKC 209
                   Y K I   G+    + A +LF E  N+  +     Y AL+ AY  +G  D  
Sbjct: 145 WYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAA 204

Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
            +L   +K   N  P + TY+ LI  F ++   D ++    +++   + PN  TYN LI 
Sbjct: 205 FTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLID 264

Query: 270 GYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
            Y  A M+ ++E  + QM+      PD+ T    LR +  +G +  ME  YE  K    G
Sbjct: 265 AYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYE--KFQSSG 322

Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEE 385
            E P IR           +   KK+ A+M  + +  Y  W  V   ++I  + +   L++
Sbjct: 323 IE-PNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHY-SWTIVTYNVVIDAFGRAGDLKQ 380

Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
           ME         +   + V +   +V +Y R +  DK+   ++  E++  RL    ++  +
Sbjct: 381 MEYLFRLMQSERIFPSCVTLC-SLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLV 439

Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
             Y    +  EM+ VL+ ME       K T+  M  AY   G    V ++ G++
Sbjct: 440 DAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVV 493

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 166/387 (42%), Gaps = 16/387 (4%)

Query: 115 RRHSNGY--AFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
           R  +NG+     E +  L ++ +   ALEV +  R Q  Y     +  Y K +   G+  
Sbjct: 81  RSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP--KEGTYMKLLVLLGKSG 138

Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
             + A  LF E   + L+ T+  Y ALL AY  + L D   S+   +K      P + TY
Sbjct: 139 QPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTY 198

Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMK 288
           +TL+         D +++ ++E+ +  ++PN  T N +++GY     + ++E++   M+ 
Sbjct: 199 STLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLV 258

Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
           +    PD  T  ++L  + + G +  ME  YE  ++     E      +I +Y K  + D
Sbjct: 259 STACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYD 318

Query: 349 RIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
           ++  +   MR +   E+ PW       +I  +A     + ME +  D    +      + 
Sbjct: 319 KMSSVMEYMRKL---EF-PWTTSTYNNIIEAFADVGDAKNMELTF-DQMRSEGMKADTKT 373

Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
             C+++ Y       K+ + V+ A         + Y++ +   A    + EME V   M+
Sbjct: 374 FCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMK 433

Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKV 492
             +  C  +TF IM  AY   G   K+
Sbjct: 434 ERQCVCDSRTFEIMVEAYEKEGMNDKI 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 185/449 (41%), Gaps = 62/449 (13%)

Query: 78  RKDLTQTVSALRDE------LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
           R+ L +  SA R+       L++ + D + + + LD+    +   H     F+ L ++LG
Sbjct: 54  RRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCDH----CFL-LFEELG 108

Query: 132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
              +    LEV  W ++Q  Y  P     Y+K I   G+     +A  LF+E  N   + 
Sbjct: 109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166

Query: 190 IGT-YNALLGAYMYNGLSDKCQSLFR------DLKKEANISPSIVTYNTLISVFGRLLLV 242
             + YNAL+ A+++    DK ++L +       +K      P++VTYN L+  F +   V
Sbjct: 167 DASVYNALITAHLHT--RDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224

Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
           D + A F+++  S +SP+V+T+N ++  Y    M  ++E +   M++    PD  T+ +L
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284

Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
           +  Y       +ME+ ++ +    +    P   +MI  Y K  + D   K E + + + +
Sbjct: 285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID---KAEWVFKKMND 341

Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
             Y P                               S  T     C++  Y  C +V + 
Sbjct: 342 MNYIP-------------------------------SFITY---ECMIMMYGYCGSVSRA 367

Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
               +    +   L  S  ++ + +Y       E + +      +++     T+  +Y A
Sbjct: 368 REIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427

Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
           Y     + +V  ++  M K+G  VP   F
Sbjct: 428 YTKADMKEQVQILMKKMEKDGI-VPNKRF 455

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 160/384 (41%), Gaps = 26/384 (6%)

Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
           +  E M+  G +P +     N   +  G      + ++T+ +K    IN   L+ D    
Sbjct: 405 SIFEEMRNAGCKPNIC--TFNAFIKMYG-----NRGKFTEMMKIFDEINVCGLSPD---- 453

Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
                   I T+N LL  +  NG+  +   +F+++K+ A   P   T+NTLIS + R   
Sbjct: 454 --------IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGS 504

Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
            +     ++ + D+ ++P++ TYN ++A      MW + E++   M+ G   P+  TY  
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564

Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
           LL  YA+   +  M  + E V   V      L++ ++   SKC   D + + E     + 
Sbjct: 565 LLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC---DLLPEAERAFSELK 621

Query: 362 EKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
           E+ + P +  L  ++ +Y +   + +    + D  + +    ++     ++  + R    
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKA-NGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680

Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
            K    ++   + G +     Y++ +  Y    R+ +   +  EM N  I     T+   
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740

Query: 480 YYAYATCGQRRKVNQVLGLMCKNG 503
             +YA      +   V+  M K+G
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHG 764

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 18/385 (4%)

Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
           +R + AL++ N  R+Q  Y  P  K  YTK  K  G     D A+ LF    ++ LK TI
Sbjct: 72  NRWQSALKIFNLLRKQHWY-EPRCKT-YTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTI 129

Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
             Y +L+  Y  + L DK  S    +K  ++  P + T+  LIS   +L   D +++   
Sbjct: 130 DVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 189

Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHS 309
           E+    +  +  TYN +I GY  A M+ ++E +   M++ G  +PD  T   ++  Y + 
Sbjct: 190 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 249

Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
            N+ +ME  Y   +      +      +I ++ K  +    KK+ ++M  + EK +    
Sbjct: 250 RNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGM---YKKMCSVMDFM-EKRFFSLT 305

Query: 370 NV---LLIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRC-IVSSYFRCNAVDKLA 423
            V   ++I  + K   +E+M+    D F       V    I  C +V++Y +   V K+ 
Sbjct: 306 TVTYNIVIETFGKAGRIEKMD----DVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKID 361

Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
           + +++  ++   L    ++  +  Y     +  M+ +  +ME  K    K TF  M   Y
Sbjct: 362 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421

Query: 484 ATCGQRRKVNQVLGLMCKNGYDVPV 508
              G    V ++   M  +G ++ +
Sbjct: 422 TAHGIFDAVQELEKQMISSGENLDI 446

Arabidopsis thaliana (taxid: 3702)

>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 6/251 (2%)

Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
           KT  TY +LL  Y    L++K + L   +K E NI+PS ++YN+L++++ +    + + A
Sbjct: 121 KTELTYGSLLNCYCKELLTEKAEGLLNKMK-ELNITPSSMSYNSLMTLYTKTGETEKVPA 179

Query: 248 AFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
             QE+K  N+ P+ +TYN ++ A   T  + G    I +M + G V PD  TY  +   Y
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239

Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
             +G   + EK  + ++     ++F   + +I  Y +      + +I   +RL IP+   
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299

Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
             +LN  +I+V  K + L   E ++   ++   S   +RI+  ++ +Y +   + K    
Sbjct: 300 VAYLN--MIQVLVKLNDLPGAE-TLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANEL 356

Query: 426 VKRAESAGWRL 436
            ++A   G +L
Sbjct: 357 KEKAPRRGGKL 367

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 165/403 (40%), Gaps = 16/403 (3%)

Query: 92  LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR--LALEVLNWRRRQAG 149
           LL     LDK   V DE  S    R    +++  L+   G   R   +LE+L+  + +  
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSV--FSYTALINAYGRNGRYETSLELLDRMKNEKI 207

Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
             + +T   Y   I    R   +D      LFAE  ++ ++  I TYN LL A    GL 
Sbjct: 208 SPSILT---YNTVINACAR-GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263

Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
           D+ + +FR +  +  I P + TY+ L+  FG+L  ++ +     E+      P++ +YN 
Sbjct: 264 DEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322

Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
           L+  Y  +    +   ++  M+A    P+ NTY +LL  +  SG    + +++  +K   
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-KEDCLEE 385
              +      +I  + +       K++  L   + E+   P +      ++A  +  L E
Sbjct: 383 TDPDAATYNILIEVFGEGGY---FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
             + I         V + +    ++ ++ +    ++           G       +HS +
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499

Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
             +A    V+E E++L  + +  I  ++ TF     AY   G+
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542

Involved in plastid gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 150/359 (41%), Gaps = 20/359 (5%)

Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
           +K  GR   V  A  +F +A  +  K T  TYN+++   M  G  +K   ++ ++  E +
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
             P  +TY+ LIS + +L   D     F E+KD+ + P    Y  L+  Y       K  
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
           ++++ MK     P   TY  L++G   +G   R+++ Y   K  + DG    L   ++  
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVDEAYGFYKDMLRDG----LTPDVVFL 341

Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPW--------LNVLLIRVYAKEDCLEEMEKSIND 392
            +  ++  ++ ++E L  +  E     W         N ++  ++  +  + E+  S  D
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKALFESKAHVSEV-SSWFD 398

Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
             +  +   +      ++  Y + N V+K    ++  +  G+  C + Y S +      +
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
           R E    + KE++    + S + + +M   +  CG+  +   +   M   G    V A+
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
225436849	494	PREDICTED: pentatricopeptide repeat-cont	0.955	0.991	0.613	0.0
255567580	509	pentatricopeptide repeat-containing prot	0.988	0.996	0.603	1e-179
449460469	514	PREDICTED: pentatricopeptide repeat-cont	0.832	0.830	0.614	1e-158
356503505	442	PREDICTED: pentatricopeptide repeat-cont	0.844	0.979	0.581	1e-149
356570536	504	PREDICTED: pentatricopeptide repeat-cont	0.972	0.990	0.519	1e-145
87241379	514	Pentatricopeptide repeat [Medicago trunc	0.826	0.824	0.541	1e-138
15224571	452	pentatricopeptide repeat-containing prot	0.826	0.938	0.558	1e-136
297822793	452	pentatricopeptide repeat-containing prot	0.849	0.964	0.532	1e-136
357450593	621	Pentatricopeptide repeat-containing prot	0.826	0.682	0.534	1e-136
224139152	360	predicted protein [Populus trichocarpa]	0.699	0.997	0.615	1e-131

>gi|225436849|ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/517 (61%), Positives = 387/517 (74%), Gaps = 27/517 (5%)

Query: 1   MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPP----LSVFTLTKSPNHSFTRDLCAPATH 56
           MKRVWK      + L+        +KPK L P    L+  T T++P       L  P T 
Sbjct: 1   MKRVWK------SGLI-------CTKPKILTPDFQNLARVTHTRTP-------LQGPYTL 40

Query: 57  TVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRR 116
           T   +++ L S+  +  D R R++L   VS LRDEL+ + DD D V RVL+EKG  LFR 
Sbjct: 41  T---SMIGLFSDKHSELDLRAREELRGKVSQLRDELVPSGDDSDMVVRVLEEKGESLFRS 97

Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
           +SNG AFVEL+KQL S P LAL+V NWRR Q  Y  PMT EEY KGI  AGR  NVDLA 
Sbjct: 98  YSNGSAFVELLKQLSSWPYLALQVFNWRRNQTDYSIPMTSEEYAKGISVAGRTKNVDLAV 157

Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
           +LF EAANK +KT  TYNAL+GAYM NG ++KCQ+LFRDLK+EA+ SP+IVTYN LISVF
Sbjct: 158 ELFTEAANKQIKTTSTYNALMGAYMCNGHAEKCQALFRDLKREASCSPTIVTYNILISVF 217

Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
           GRL+LVDHMEA F+EIK+  LSPN+ TYN +IAGY+TAWMW ++E+ ++ MK   + PD 
Sbjct: 218 GRLMLVDHMEATFREIKELELSPNISTYNNIIAGYVTAWMWNRMEDTFRTMKEDNIQPDI 277

Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
           NT+LL+LRGYAHSGNL +ME+ YEL+K HV+ KE PLIRAMICAY K S+TDR++KI AL
Sbjct: 278 NTHLLMLRGYAHSGNLQKMEETYELIKGHVNDKEIPLIRAMICAYCKSSITDRVEKIGAL 337

Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
           M+LIPE EYRPWLNV+LIRVYA+ED +EEME SIN+AFEHKTSV T+R+MR I+++YFRC
Sbjct: 338 MKLIPENEYRPWLNVMLIRVYAQEDWVEEMENSINEAFEHKTSVKTMRVMRSIIATYFRC 397

Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
           NAVD+LANFVKRAE  GW +CRSLYH KMVMYASQ+R+EEMESVL EME+    C+KKTF
Sbjct: 398 NAVDRLANFVKRAECGGWHICRSLYHCKMVMYASQKRLEEMESVLNEMESSNFCCTKKTF 457

Query: 477 WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
           WI+Y AY+   QR KV QV GLMCK+GY +P +   S
Sbjct: 458 WILYKAYSMWDQRHKVEQVKGLMCKHGYGIPSDVLLS 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567580|ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535953|gb|EEF37612.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/515 (60%), Positives = 394/515 (76%), Gaps = 8/515 (1%)

Query: 1   MKRVWKLSD-AAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVF 59
           MKRV K+SD A Q ELL   L +  S  +TL P  + TLTKSP +   R   +    + F
Sbjct: 1   MKRVSKISDLAVQAELL--SLNKFPSITQTLTPY-ILTLTKSPIYKLARAHTSEPV-SFF 56

Query: 60  PTLVRLLSETLTYP-DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS 118
           P ++ L S    +P D +  +DL++TVS LRDEL+ + +D DK FRVL+E+G  LFR  S
Sbjct: 57  PNIISLFSRR--FPVDNKAIEDLSKTVSHLRDELVQHAEDSDKFFRVLEEQGDSLFRMRS 114

Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
           +  A VEL++QL S P LA+EV NWRR+Q  + TPMT EEY KGI  AGR  NVDLA ++
Sbjct: 115 DRSALVELLRQLVSLPHLAVEVFNWRRKQTEWSTPMTHEEYAKGITIAGRAKNVDLAIEI 174

Query: 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
           FAEA +K  K    YNAL+GAYMYNG  DKCQSLF D KKEANI PS+VTYN LISVFGR
Sbjct: 175 FAEACSKRRKKTCIYNALMGAYMYNGHYDKCQSLFLDFKKEANIGPSVVTYNILISVFGR 234

Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
            +LVDHMEA F+E+ + N+SPNV TYN LIAGY+TAWMW  +E+++Q+MK GP+ P  +T
Sbjct: 235 SMLVDHMEATFRELMNLNISPNVSTYNNLIAGYVTAWMWDDMEQVFQLMKEGPIYPHLDT 294

Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
           YLL+LRGYAHSGN+ +ME++Y+LV+ HV+  E PLIR MICAY K S+TDRIKKIE L+R
Sbjct: 295 YLLMLRGYAHSGNIEKMEEMYKLVQDHVNVNEVPLIRTMICAYCKSSITDRIKKIEELLR 354

Query: 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418
           LIPE+EYRPWLNVLLI+VYA+++ LE ME  I++AF+H+T++TTV IMR I++SYFRCNA
Sbjct: 355 LIPEEEYRPWLNVLLIKVYAQQNLLEAMENKIDEAFKHETTITTVGIMRTIIASYFRCNA 414

Query: 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWI 478
           VD+LA+FVKRAE +GWR+CRSLYH KMVMYAS++R++EMESVL +MEN+ +  +KKTF I
Sbjct: 415 VDRLADFVKRAECSGWRICRSLYHCKMVMYASEKRLDEMESVLNDMENFNLGRTKKTFVI 474

Query: 479 MYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
           +Y AY  CG++ KV QVLGLM K+GY+VP  A PS
Sbjct: 475 LYKAYLMCGKKYKVEQVLGLMYKHGYEVPEGASPS 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460469|ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Cucumis sativus] gi|449494249|ref|XP_004159492.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Cucumis sativus]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/428 (61%), Positives = 336/428 (78%), Gaps = 1/428 (0%)

Query: 81  LTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEV 140
           + + V  +  EL+ N +D +K+ ++L++    L  +H++G AFVEL+KQLGS+P LALEV
Sbjct: 81  MERKVLEVSHELILNSEDSNKIVKILEDSKDLLLWKHTDGSAFVELLKQLGSQPNLALEV 140

Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200
            NWRRRQ G   P+T EEY KGI  AG+  ++DLA  LF EA+NK +K   TYNAL+G +
Sbjct: 141 FNWRRRQGG-SFPLTVEEYAKGIAVAGKSKHIDLAVGLFNEASNKRVKATSTYNALMGVF 199

Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
           M+NGL+DKC S+FRDLK++A   P+IVTYN LISVFGRL+LVDHMEA  +EI + NLSPN
Sbjct: 200 MFNGLADKCNSVFRDLKRDAGCVPNIVTYNILISVFGRLMLVDHMEATMREIHNLNLSPN 259

Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
           V TYN LIAGY+TAWMW ++E+ +  MKA  + P+T T+LL+LRGYAHS NL +ME+++ 
Sbjct: 260 VNTYNSLIAGYITAWMWKRMEQAFMKMKASSITPNTETFLLMLRGYAHSDNLEKMEEMHH 319

Query: 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE 380
            +K HV+   FPLIRAMI AYS+ S+TD++ KI+AL++LIPE+EYRPWLNV LIRVYA+ 
Sbjct: 320 FLKDHVNKNNFPLIRAMIYAYSRSSITDKVHKIDALLKLIPEEEYRPWLNVKLIRVYAQA 379

Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
           DCLE ME SIN+AFEH TSV TV +MR I++SYFRCNAVDKL NF+ RAES+GWR+CRSL
Sbjct: 380 DCLERMENSINEAFEHGTSVYTVHVMRSIIASYFRCNAVDKLINFISRAESSGWRICRSL 439

Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
           YH KMVM+ASQ R+EEME VL EM+N+ +D SKKTF+I+Y AY+T G R K NQV+  MC
Sbjct: 440 YHCKMVMFASQNRLEEMECVLDEMKNFNLDWSKKTFYILYKAYSTSGCRYKANQVVCRMC 499

Query: 501 KNGYDVPV 508
           K GY VPV
Sbjct: 500 KLGYGVPV 507

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503505|ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Glycine max]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/433 (58%), Positives = 328/433 (75%)

Query: 80  DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
           DL   V+ L++EL+ +  D  +V  +LD+    LFRRH NG A ++LM QL S P LAL+
Sbjct: 10  DLINKVTILKNELIRDSCDSARVQTILDDSFDTLFRRHPNGSALLKLMNQLNSNPSLALQ 69

Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           V +WRR+++    PM   EY+KGIK AGR  NVDLA  LF EAA K +KT GTYNAL+GA
Sbjct: 70  VFSWRRKRSNAENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTGTYNALMGA 129

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           +M+NGL D CQSLF DLK++    PSI TYN L+SV+GRL+LVDHMEA F EI+  NL+ 
Sbjct: 130 FMFNGLPDNCQSLFCDLKRDLTCDPSIATYNILLSVYGRLMLVDHMEATFSEIQRLNLAM 189

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N+ TYN+LIAGY+TAWMW  +E+++QM+K   V P+  T+LL+LRGYA+SGNL +ME++Y
Sbjct: 190 NICTYNHLIAGYITAWMWDDMEKVFQMLKLSSVEPNMKTHLLMLRGYANSGNLEKMEEMY 249

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
             ++ HV+ KE  LIR MICAY + S  DR+KKIE L++ IP+KEYRPWLNVLLI++YAK
Sbjct: 250 SFIRDHVNIKEISLIRCMICAYCRSSHADRLKKIELLLKFIPQKEYRPWLNVLLIKLYAK 309

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
           ED L +ME +IN+AFEH TS+TT  I+R I+++Y+RCNAV+KL NFV+RAE +GW +CRS
Sbjct: 310 EDWLAKMENAINEAFEHGTSITTKGILRRIIATYYRCNAVEKLENFVRRAEISGWSICRS 369

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYH K+VMY SQ  + EM +VL+EMEN K+ CSKKT WIMY AY + GQ   V + LG M
Sbjct: 370 LYHCKLVMYGSQMTLLEMHNVLEEMENVKLKCSKKTLWIMYKAYMSRGQISMVLKTLGQM 429

Query: 500 CKNGYDVPVNAFP 512
            K+GY+VP++AFP
Sbjct: 430 FKHGYEVPLSAFP 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570536|ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Glycine max]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/518 (51%), Positives = 352/518 (67%), Gaps = 19/518 (3%)

Query: 1   MKRVWKLS-DAAQTELLLQRLQRHS----SKPKTLPPLSVFTLTKSPNHSFTRDLCAPAT 55
           M+RVW+ S DA +   LL  LQ H     S PKT P L+   L+   N +   + C+   
Sbjct: 1   MRRVWRFSSDATRRAQLLLLLQSHYFHGFSNPKTTPSLAT-ALSHHRNLNSVPNACS--- 56

Query: 56  HTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFR 115
                 L+ L +       +  ++DL    S L++EL+    D  +V  +LD+    L +
Sbjct: 57  -----DLIPLFTAKSC---SSAKEDLINKASILKNELIRESSDSARVLSILDDNSDTLIQ 108

Query: 116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLA 175
           RH +G   + LM QL S P LAL+V +WRR+++    PM   EY+KGIK AGR  NVDLA
Sbjct: 109 RHPDGSVLLRLMNQLNSNPSLALQVFSWRRKRSNVENPMDAYEYSKGIKAAGRSGNVDLA 168

Query: 176 ADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
             LF EAA K +KT  TYNAL+GA M NGL+D CQSLF DLK++    PSI TYN L+SV
Sbjct: 169 VKLFKEAAVKGIKTTSTYNALMGACMSNGLADNCQSLFCDLKRDPTCDPSIATYNILLSV 228

Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
           FGRL+LVDHMEA F+EI+    + N+ TYN++IAGY+TAWMW  +E ++QM+K  PV P+
Sbjct: 229 FGRLMLVDHMEATFREIQKLTFTMNICTYNHMIAGYITAWMWDDMENVFQMLKRSPVEPN 288

Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355
             TY+L+LRGYA+SGNL +ME+IY  +   VD KE  LIR MICAYS+ S  DR+KKIE 
Sbjct: 289 MKTYMLMLRGYANSGNLEKMEEIYSFITDRVDIKEISLIRCMICAYSRSSDADRLKKIEL 348

Query: 356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
           L++ IP KEYRPWLNVLLI++YAKED LE+ME +IN+AFEH TS+TT  I+RCIV++Y+R
Sbjct: 349 LLKFIPGKEYRPWLNVLLIKLYAKEDWLEKMENAINEAFEHGTSITTKGILRCIVATYYR 408

Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
            NAV+KL NFV+RAE +GW +CRS YH K+VMY SQ  +  M +VL+EME   ++C+KKT
Sbjct: 409 YNAVEKLENFVRRAEISGWSICRSAYHCKLVMYGSQ--LPLMHNVLEEMEMVNLECTKKT 466

Query: 476 FWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
            WIMY AY   GQ   V + LG M K+GY+VP++AFPS
Sbjct: 467 LWIMYKAYMRNGQSSMVLKTLGQMFKHGYEVPLSAFPS 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87241379|gb|ABD33237.1| Pentatricopeptide repeat [Medicago truncatula]

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/434 (54%), Positives = 318/434 (73%), Gaps = 10/434 (2%)

Query: 85  VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWR 144
           V+ L  +L+    D   V  +LDE    L   H     +++L+ QL S+P L LEV+NWR
Sbjct: 86  VAILVKDLICVASDSVSVTSILDENSEFLIGSHP---VYIQLLNQLDSKPSLLLEVINWR 142

Query: 145 R-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           R R+  +       M   EY+KGIK AGR  N+DLA  LF EA  K +K   TYNAL+GA
Sbjct: 143 RKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKGVKITSTYNALMGA 202

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGLSDKC SLF D+KK+    PS+ TYN +ISVFGRL+L+DHMEA F+E+ +  L+P
Sbjct: 203 YMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEATFKEMNELPLAP 262

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+  TYLL++RGYAH GNL +MEKIY
Sbjct: 263 NISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKIY 322

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
            LVK +V+  + P+IR MICAY K S  D++ K++AL++LIPEKEYRPWLNVLLI++YA+
Sbjct: 323 SLVKDNVN--DMPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLIKLYAE 380

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
            +CLEEM+ +IN+AFE +T VTT+ IMRCI+++YFR NA++ L  F +R+  AGWR+C S
Sbjct: 381 GNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIESLEKFTRRSVLAGWRMCYS 440

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYHSK+VMY SQ+ + EM++VL+EM++  I  +KKT WIMY AY  CGQR  V ++LG M
Sbjct: 441 LYHSKLVMYGSQKNLREMQNVLEEMDSVNIQRTKKTMWIMYKAYWNCGQRSMVLKILGQM 500

Query: 500 CKNGYDVPVNAFPS 513
            K+G++VP++AFPS
Sbjct: 501 FKHGHEVPIDAFPS 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224571|ref|NP_180636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75219588|sp|O49343.1|PP177_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g30780 gi|2880055|gb|AAC02749.1| hypothetical protein [Arabidopsis thaliana] gi|110736845|dbj|BAF00380.1| hypothetical protein [Arabidopsis thaliana] gi|330253346|gb|AEC08440.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/424 (55%), Positives = 302/424 (71%)

Query: 80  DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
           DL Q VS L+DELL   +  +K   VLD+KG  LFR + +G   +ELM QL  R  LAL+
Sbjct: 28  DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87

Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           VL WRR Q  Y  P+T EEY KGIK AGR  +++LA  LF EAA K ++T   YN+L+  
Sbjct: 88  VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++   L P
Sbjct: 148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N  TYN+LIAGYMTAW W K+E  +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct: 208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
           E++K  V     PL+RAMICAY K +V DR++KIE L+ L+  +EY PWLNVLLIR+YA+
Sbjct: 268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
           ED +E ME  IN+AFE KT V    IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct: 328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYH K++MY SQ+R EEME V+ EM         KTF IM  AY   G      +V G M
Sbjct: 388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447

Query: 500 CKNG 503
            K G
Sbjct: 448 LKRG 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822793|ref|XP_002879279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325118|gb|EFH55538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/458 (53%), Positives = 309/458 (67%), Gaps = 22/458 (4%)

Query: 46  FTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRV 105
           FTR    PA HT                      DL Q VS L+DELL   +  +K   V
Sbjct: 16  FTRVTSLPAHHT----------------------DLVQRVSILKDELLTIGNSKEKFQNV 53

Query: 106 LDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF 165
           LD+KG  LF+ + +G   +ELM QL  R  LAL+VL WRR Q  Y  P+T EEY KGIK 
Sbjct: 54  LDQKGQWLFKSYRDGAGILELMDQLFPRHYLALQVLEWRRGQKDYCIPLTSEEYAKGIKI 113

Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
           AGR  +++LA  LF EAA K  +T   YNAL+  YM+NGL+D+CQSLF+D +++ + +P+
Sbjct: 114 AGRARDINLAVYLFDEAAKKRSQTASVYNALMSVYMWNGLADECQSLFKDFRRQTHCAPT 173

Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
           +VTYN L+SV+GRLL+V +MEAAF+E++   LSPN  TYN+LIAGYMTAW W K+E  +Q
Sbjct: 174 VVTYNILVSVYGRLLMVKNMEAAFEELQKLKLSPNSVTYNFLIAGYMTAWNWDKMEATFQ 233

Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
            MK G V PDT+TY L+LRGYA+SGNL +ME++YE++K  V     PL+RAMICAY K +
Sbjct: 234 EMKRGLVEPDTDTYQLMLRGYANSGNLNKMEEMYEVIKDQVGVNSSPLVRAMICAYCKKA 293

Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
           V DR++K+E L+ L+  +EY PWLN LLIR+YA+ED +E ME  IN+AFEHKT V    I
Sbjct: 294 VEDRVQKVENLLSLLSGEEYLPWLNGLLIRLYAQEDIVEAMESKINEAFEHKTCVNKSSI 353

Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
           MR I+++YFR N VD LANFVKRAESAGW+LCRSLYH K++MY SQ+R EEME VL EM 
Sbjct: 354 MRAIIAAYFRFNEVDNLANFVKRAESAGWKLCRSLYHCKIMMYGSQKRFEEMEGVLNEMA 413

Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
                   KTF IMY AY   G      +V G+M K G
Sbjct: 414 ETNYGLVTKTFAIMYKAYKNHGMESDAEKVKGMMLKRG 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450593|ref|XP_003595573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355484621|gb|AES65824.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/434 (53%), Positives = 315/434 (72%), Gaps = 10/434 (2%)

Query: 85  VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWR 144
           V+ L  +L+    D   V  +LDE    L   H     +++L+ QL S+P L LEV+NWR
Sbjct: 86  VAILVKDLICVASDSVSVTSILDENSEFLIGSHP---VYIQLLNQLDSKPSLLLEVINWR 142

Query: 145 R-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           R R+  +       M   EY+KGIK AGR  N+DLA  LF EA  K +K   TYNAL+GA
Sbjct: 143 RKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKGVKITSTYNALMGA 202

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGLSDKC SLF D+KK+    PS+ TYN +ISVFGRL+L+DHMEA F+E+ +  L+P
Sbjct: 203 YMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEATFKEMNELPLAP 262

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+  TYLL++RGYAH GNL +MEKIY
Sbjct: 263 NISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKIY 322

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
            LVK +V+  + P+IR MICAY K S  D++ K++AL++LIPEKEYRPWLNVLLI++YA+
Sbjct: 323 SLVKDNVN--DMPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLIKLYAE 380

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
            +CLEEM+ +IN+AFE +T VTT+ IMRCI+++YFR NA++ L  F +R+  AGWR+C S
Sbjct: 381 GNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIESLEKFTRRSVLAGWRMCYS 440

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYHSK+VMY SQ+ + EM++VL+EM++  I  +KKT WIMY AY  CGQR  V ++LG M
Sbjct: 441 LYHSKLVMYGSQKNLREMQNVLEEMDSVNIQRTKKTMWIMYKAYWNCGQRSMVLKILGQM 500

Query: 500 CKNGYDVPVNAFPS 513
            K+G++VP++   S
Sbjct: 501 FKHGHEVPIDNMAS 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139152|ref|XP_002322993.1| predicted protein [Populus trichocarpa] gi|222867623|gb|EEF04754.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/359 (61%), Positives = 280/359 (77%)

Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
           MT  EY KGI  AG   NVDLA ++F EA  K +KT   YNAL+ A M NGL+ KC+SLF
Sbjct: 1   MTAAEYAKGIMIAGTDKNVDLAVEIFDEAIKKCIKTTSMYNALMTACMCNGLAGKCESLF 60

Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
           R++K++    PS+VTYN L+SVFGRL+LVD MEA F+E++DS +SPN+ TYN LI+GY+T
Sbjct: 61  REMKRDVKCRPSVVTYNILVSVFGRLMLVDKMEAIFKEMEDSRISPNLTTYNNLISGYVT 120

Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
            WMW  +E+ +QMM AGPV PD NT+LL+LRGYAHSG+L +ME +YEL+K HV+ +   L
Sbjct: 121 VWMWDSMEKTFQMMIAGPVKPDLNTHLLMLRGYAHSGHLEQMELVYELIKDHVNARRLTL 180

Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
           IRAMICAY K S+ +R++KIEALMRLIPEKEYRPWLNVLLI++YA+ED LE ME SIN+A
Sbjct: 181 IRAMICAYCKSSIPERVQKIEALMRLIPEKEYRPWLNVLLIKLYAEEDRLEGMENSINEA 240

Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
           F H+ +++TV IM+ I++SYFRCNAVDKL +F+KRA  A WR+ R L+H KMVMY +Q+R
Sbjct: 241 FNHRITISTVSIMQAIITSYFRCNAVDKLTDFIKRATYARWRIIRPLFHCKMVMYGTQKR 300

Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP 512
           ++EMESVL EMEN  +  +KKTFWI+Y AY  CGQ  KV QV GLMCK+GY  P +  P
Sbjct: 301 LDEMESVLIEMENCNLPRTKKTFWILYKAYLNCGQWYKVEQVAGLMCKHGYGNPFDTSP 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
TAIR|locus:2054462	452	AT2G30780 "AT2G30780" [Arabido	0.826	0.938	0.558	2.4e-124
TAIR|locus:2081041	486	PPR2 "pentatricopeptide repeat	0.721	0.761	0.239	4.6e-20
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.695	0.435	0.261	1.3e-18
TAIR|locus:2122561	563	EMB2453 "EMBRYO DEFECTIVE 2453	0.752	0.685	0.228	2.8e-17
TAIR|locus:2036586	491	AT1G60770 [Arabidopsis thalian	0.606	0.633	0.253	2e-15
TAIR|locus:2093472	642	AT3G16010 [Arabidopsis thalian	0.662	0.529	0.217	3.7e-15
TAIR|locus:2020808	660	AT1G03560 [Arabidopsis thalian	0.715	0.556	0.226	2.9e-13
TAIR|locus:2090014	551	AT3G13150 "AT3G13150" [Arabido	0.610	0.568	0.212	5.8e-13
TAIR|locus:2178037	678	AT5G39980 [Arabidopsis thalian	0.549	0.415	0.234	6.3e-13
TAIR|locus:2027166	862	PTAC2 "plastid transcriptional	0.754	0.448	0.213	6.9e-13

TAIR|locus:2054462 AT2G30780 "AT2G30780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 237/424 (55%), Positives = 302/424 (71%)

Query:    80 DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
             DL Q VS L+DELL   +  +K   VLD+KG  LFR + +G   +ELM QL  R  LAL+
Sbjct:    28 DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87

Query:   140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
             VL WRR Q  Y  P+T EEY KGIK AGR  +++LA  LF EAA K ++T   YN+L+  
Sbjct:    88 VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147

Query:   200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
             YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++   L P
Sbjct:   148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207

Query:   260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
             N  TYN+LIAGYMTAW W K+E  +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct:   208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267

Query:   320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
             E++K  V     PL+RAMICAY K +V DR++KIE L+ L+  +EY PWLNVLLIR+YA+
Sbjct:   268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327

Query:   380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
             ED +E ME  IN+AFE KT V    IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct:   328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387

Query:   440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
             LYH K++MY SQ+R EEME V+ EM         KTF IM  AY   G      +V G M
Sbjct:   388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447

Query:   500 CKNG 503
              K G
Sbjct:   448 LKRG 451

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 93/388 (23%), Positives = 167/388 (43%)

Query:   115 RRHSNGYA--FVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKE-EYTKGIKFAGRI 169
             R  +NG+     E +  L ++ +   ALEV +  R Q  Y     KE  Y K +   G+ 
Sbjct:    81 RSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFY---QPKEGTYMKLLVLLGKS 137

Query:   170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
                + A  LF E   + L+ T+  Y ALL AY  + L D   S+   +K      P + T
Sbjct:   138 GQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFT 197

Query:   229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MM 287
             Y+TL+         D +++ ++E+ +  ++PN  T N +++GY     + ++E++   M+
Sbjct:   198 YSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDML 257

Query:   288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
              +    PD  T  ++L  + + G +  ME  YE  ++     E      +I +Y K  + 
Sbjct:   258 VSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMY 317

Query:   348 DRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
             D++  +   MR +   E+ PW       +I  +A     + ME +  D    +      +
Sbjct:   318 DKMSSVMEYMRKL---EF-PWTTSTYNNIIEAFADVGDAKNMELTF-DQMRSEGMKADTK 372

Query:   405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
                C+++ Y       K+ + V+ A         + Y++ +   A    + EME V   M
Sbjct:   373 TFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRM 432

Query:   465 ENYKIDCSKKTFWIMYYAYATCGQRRKV 492
             +  +  C  +TF IM  AY   G   K+
Sbjct:   433 KERQCVCDSRTFEIMVEAYEKEGMNDKI 460

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0048868 "pollen tube development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0019843 "rRNA binding" evidence=IDA

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 99/378 (26%), Positives = 165/378 (43%)

Query:   139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
             E +  + + A  GT      YT  +    R   V+ A  +F E  N   K  I T+NA +
Sbjct:   367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426

Query:   198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
               Y   G   +   +F ++     +SP IVT+NTL++VFG+  +   +   F+E+K +  
Sbjct:   427 KMYGNRGKFTEMMKIFDEINV-CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 485

Query:   258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
              P   T+N LI+ Y     + +   +Y+ M    V PD +TY  +L   A  G   + EK
Sbjct:   486 VPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEK 545

Query:   318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY------RPWLNV 371
             +   ++   DG+  P      C+          K+I  LM  + E+ Y      R  L  
Sbjct:   546 VLAEME---DGRCKPN-ELTYCSLLHAYANG--KEI-GLMHSLAEEVYSGVIEPRAVLLK 598

Query:   372 LLIRVYAKEDCLEEMEKSINDAFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
              L+ V +K D L E E++ ++  E   S  +TT+  M   VS Y R   V K    +   
Sbjct:   599 TLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSM---VSIYGRRQMVAKANGVLDYM 655

Query:   430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
             +  G+    + Y+S M M++      + E +L+E+    I     ++  + YAY    + 
Sbjct:   656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRM 715

Query:   490 RKVNQVLGLMCKNGYDVP 507
             R  +++   M  +G  VP
Sbjct:   716 RDASRIFSEMRNSGI-VP 732

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 95/416 (22%), Positives = 179/416 (43%)

Query:    78 RKDLTQTVSALRDE------LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
             R+ L +  SA R+       L++ + D + + + LD+    +   H     F+ L ++LG
Sbjct:    54 RRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCDH----CFL-LFEELG 108

Query:   132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
                +    LEV  W ++Q  Y  P     Y+K I   G+     +A  LF+E  N   + 
Sbjct:   109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166

Query:   190 -IGTYNALLGAYMYNGLSDKCQSL-----FRD-LKKEANISPSIVTYNTLISVFGRLLLV 242
                 YNAL+ A+++    DK ++L     + D +K      P++VTYN L+  F +   V
Sbjct:   167 DASVYNALITAHLHT--RDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224

Query:   243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
             D + A F+++  S +SP+V+T+N ++  Y    M  ++E +   M++    PD  T+ +L
Sbjct:   225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284

Query:   303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
             +  Y       +ME+ ++ +    +    P   +MI  Y K  + D   K E + + + +
Sbjct:   285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID---KAEWVFKKMND 341

Query:   363 KEYRP-WLNV-LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
               Y P ++    +I +Y     +    +   +  E    V     +  ++  Y R     
Sbjct:   342 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGE-SDRVLKASTLNAMLEVYCRNGLYI 400

Query:   421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
             +       A +       S Y      Y      E+++ ++K+ME   I  +K+ F
Sbjct:   401 EADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF 456

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 83/328 (25%), Positives = 150/328 (45%)

Query:   188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
             KT  TY +LL  Y    L++K + L   +K E NI+PS ++YN+L++++ +    + + A
Sbjct:   121 KTELTYGSLLNCYCKELLTEKAEGLLNKMK-ELNITPSSMSYNSLMTLYTKTGETEKVPA 179

Query:   248 AFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
               QE+K  N+ P+ +TYN ++ A   T  + G    I +M + G V PD  TY  +   Y
Sbjct:   180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239

Query:   307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
               +G   + EK  + ++     ++F   + +I  Y +      + +I   +RL IP+   
Sbjct:   240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299

Query:   366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
               +LN  +I+V  K + L   E    + ++   S   +RI+  ++ +Y +   + K    
Sbjct:   300 VAYLN--MIQVLVKLNDLPGAETLFKE-WQANCSTYDIRIVNVLIGAYAQEGLIQKANEL 356

Query:   426 VKRAESAGWRLCRSLYHSKMVMYA-SQRRVEEMESVLKEMENYKIDCSKKTFWI-----M 479
              ++A   G +L    +   M  Y  S      +E + K +   K D  K   W+     +
Sbjct:   357 KEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGK---WLPSPETV 413

Query:   480 YYAYATCGQRRKVNQVLGLM--CKNGYD 505
                 +   Q++ VN    L+   KNG D
Sbjct:   414 RALMSYFEQKKDVNGAENLLEILKNGTD 441

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 78/358 (21%), Positives = 155/358 (43%)

Query:   163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
             +K  GR   V  A  +F +A  +  K T  TYN+++   M  G  +K   ++ ++  E +
Sbjct:   169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query:   222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
               P  +TY+ LIS + +L   D     F E+KD+ + P    Y  L+  Y       K  
Sbjct:   229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query:   282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
             ++++ MK     P   TY  L++G   +G   R+++ Y   K  + DG    L   ++  
Sbjct:   289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVDEAYGFYKDMLRDG----LTPDVVFL 341

Query:   341 YSKCSVTDRIKKIEALMRLIPEKE-YR--PWL---NVLLIRVYAKEDCLEEMEKSINDAF 394
              +  ++  ++ ++E L  +  E   +R  P +   N ++  ++  +  + E+  S  D  
Sbjct:   342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVS-SWFDKM 400

Query:   395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
             +  +   +      ++  Y + N V+K    ++  +  G+  C + Y S +      +R 
Sbjct:   401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460

Query:   455 EEMESVLKEM-ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
             E    + KE+ EN+  + S + + +M   +  CG+  +   +   M   G    V A+
Sbjct:   461 EAANELFKELKENFG-NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020808 AT1G03560 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 90/398 (22%), Positives = 175/398 (43%)

Query:   113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
             L +   N  +FV    ++  +P +A     W R+Q  Y   +  E Y   +       +V
Sbjct:   111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNL--ECYVSLVDVLALAKDV 168

Query:   173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
             D    + +E        T+   NAL+ ++   G+ ++   ++R +K E  I P++ TYN 
Sbjct:   169 DRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK-ENGIEPTLYTYNF 227

Query:   232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
             L++     + VD  E  F+ ++   + P++ TYN +I GY  A    K  E  + M+   
Sbjct:   228 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 287

Query:   292 VMPDTNTYLLLLRG-YAHS--GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
                D  TY+ +++  YA S  G+   + +  +     V    F L+   +C   K  + +
Sbjct:   288 HEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGK--LNE 345

Query:   349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK----EDCLEEMEKSINDAFEHKTSVTT 402
                  E ++R    K  +P + +  +LI  YAK    ED +  + + I++ F  K  V T
Sbjct:   346 GYTVFENMIR----KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGF--KPDVVT 399

Query:   403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR-RVEEMESVL 461
               +   +V+   +   V++  ++       G  +  S+++S ++    +  RV+E E + 
Sbjct:   400 YSV---VVNGLCKNGRVEEALDYFHTCRFDGLAI-NSMFYSSLIDGLGKAGRVDEAERLF 455

Query:   462 KEMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGL 498
             +EM      C++ ++   Y A      + RKV++ + L
Sbjct:   456 EEMSEK--GCTRDSY--CYNALIDAFTKHRKVDEAIAL 489

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 70/330 (21%), Positives = 151/330 (45%)

Query:   109 KGSC---LFRR-HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIK 164
             K SC    FR+ H    AF+  +++      +  EVL ++++       +  E++   I 
Sbjct:    75 KRSCESESFRQVHGLYSAFIRRLREAKKFSTID-EVLQYQKKF----DDIKSEDFVIRIM 129

Query:   165 FA-GRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
                G     + A  LF E    +  +T+ ++NALL AY+ +   D+    F++L ++  I
Sbjct:   130 LLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGI 189

Query:   223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
             +P +VTYNT+I    R   +D + + F+E++ +   P++ ++N L+  +    ++ + + 
Sbjct:   190 TPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDR 249

Query:   283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
             I+ +MK+  + P+  +Y   +RG   +        + +++K      +     A+I AY 
Sbjct:   250 IWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYR 309

Query:   343 KCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
                V + ++++      + EK   P      +LI +  K+  L+   +   +A +HK  +
Sbjct:   310 ---VDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKL-L 365

Query:   401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
             +   + + +V        +D+    VK  +
Sbjct:   366 SRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
 Identities = 69/294 (23%), Positives = 131/294 (44%)

Query:   175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
             A  +FAE    +    + T N ++  Y    +  +   LF  L+K  +I P++V+YNT++
Sbjct:   314 ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRK-MDIEPNVVSYNTIL 372

Query:   234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
              V+G   L       F+ ++  ++  NV TYN +I  Y       K   + Q M++  + 
Sbjct:   373 RVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIE 432

Query:   294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP--LIRAMICAYSKCSVTDRIK 351
             P+  TY  ++  +  +G L R   +++ ++    G E    L + MI AY +  +    K
Sbjct:   433 PNAITYSTIISIWGKAGKLDRAATLFQKLRS--SGVEIDQVLYQTMIVAYERVGLMGHAK 490

Query:   352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
             ++   ++L P+   R       I + AK    EE       AFE    V  + +  C+++
Sbjct:   491 RLLHELKL-PDNIPRE----TAITILAKAGRTEEATWVFRQAFE-SGEVKDISVFGCMIN 544

Query:   412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
              Y R      +    ++  +AG+    ++    +  Y  QR  E+ ++V +EM+
Sbjct:   545 LYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 598

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
 Identities = 86/403 (21%), Positives = 166/403 (41%)

Query:    92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAG 149
             LL     LDK   V DE  S    R  + +++  L+   G   R   +LE+L+  + +  
Sbjct:   150 LLGREGLLDKCLEVFDEMPSQGVSR--SVFSYTALINAYGRNGRYETSLELLDRMKNEKI 207

Query:   150 YGTPMTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLKT-IGTYNALLGAYMYNGLS 206
               + +T   Y   I    R   +D      LFAE  ++ ++  I TYN LL A    GL 
Sbjct:   208 SPSILT---YNTVINACAR-GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263

Query:   207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
             D+ + +FR +  +  I P + TY+ L+  FG+L  ++ +     E+      P++ +YN 
Sbjct:   264 DEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322

Query:   267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
             L+  Y  +    +   ++  M+A    P+ NTY +LL  +  SG    + +++  +K   
Sbjct:   323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query:   327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-KEDCLEE 385
                +      +I  + +       K++  L   + E+   P +      ++A  +  L E
Sbjct:   383 TDPDAATYNILIEVFGEGGY---FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query:   386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
               + I         V + +    ++ ++ +    ++           G       +HS +
Sbjct:   440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499

Query:   446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
               +A    V+E E++L  + +  I  ++ TF     AY   G+
Sbjct:   500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542

GO:0009507 "chloroplast" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49343	PP177_ARATH	No assigned EC number	0.5589	0.8265	0.9380	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023626001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (452 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	9e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.001
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.003

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
           P +VTYNTLI  + +   V+     F E+K   + PNV+TY+ LI G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
           P+V TYN LI GY       +  +++  MK   + P+  TY +L+ G   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
           TYN L+  Y   G  ++   LF ++KK   I P++ TY+ LI    +
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 15/174 (8%)

Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT---- 192
           A EV          GTP   E YT  +    +  + D     FA +    +K  G     
Sbjct: 598 AKEVYQMIHEYNIKGTP---EVYTIAVNSCSQKGDWD-----FALSIYDDMKKKGVKPDE 649

Query: 193 --YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
             ++AL+    + G  DK   + +D +K+  I    V+Y++L+               ++
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
           +IK   L P V T N LI          K  E+   MK   + P+T TY +LL 
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 32/166 (19%)

Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
           KT   +N++L  Y  +G S++   L+ +++ ++ +S    T++ +I +F RL L++H + 
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 248 AFQEIKDSNLS-------------------------------PNVFTYNYLIAGYMTAWM 276
           A   +  +                                   N+ ++N LIAGY     
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406

Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
             K  E+++ M A  V P+  T+L +L    +SG   +  +I++ +
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 43/214 (20%)

Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
           T+ A+L A  Y+GLS++   +F+ + +   I P  + Y  +I + GR  L+D    A+  
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE---AYAM 484

Query: 252 IKDSNLSPNVFTYNYLI-AGYMTAWM-WGKV--EEIYQMMKAGPVMPDTNTYLLLLRGYA 307
           I+ +   P V  +  L+ A  +   +  G++  E++Y M   GP     N Y++LL  Y 
Sbjct: 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM---GP--EKLNNYVVLLNLYN 539

Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS-VT-----------DRI----- 350
            SG      K+ E +K           R  +  +  C+ +            DR+     
Sbjct: 540 SSGRQAEAAKVVETLK-----------RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588

Query: 351 ---KKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381
              +K++ LM+ I E  Y    N LL  V   E+
Sbjct: 589 EIYQKLDELMKEISEYGYVAEENELLPDVDEDEE 622

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 1/126 (0%)

Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
           T+ T+N L+     +   D    + R L +EA +      Y TLIS   +   VD M   
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
           F E+ ++ +  NV T+  LI G   A    K    Y +M++  V PD   +  L+     
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 309 SGNLPR 314
           SG + R
Sbjct: 555 SGAVDR 560

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQ--EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
           +   N+LI ++  L      E  F   E KD        ++  +I+GY    +  K  E 
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKD------AVSWTAMISGYEKNGLPDKALET 376

Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
           Y +M+   V PD  T   +L   A  G+L    K++EL +         +  A+I  YSK
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373
           C     I K   +   IPEK+   W +++ 
Sbjct: 437 CK---CIDKALEVFHNIPEKDVISWTSIIA 463

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
           K + ++NAL+  Y  +G   K   +F  +  E  ++P+ VT+  ++S      L +    
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWE 447

Query: 248 AFQEI-KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
            FQ + ++  + P    Y  +I         G ++E Y M++  P  P  N +  LL   
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGRE---GLLDEAYAMIRRAPFKPTVNMWAALL--- 501

Query: 307 AHSGNLPRMEKIYELVK 323
                  R+ K  EL +
Sbjct: 502 ----TACRIHKNLELGR 514

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
           N ++S+F R   + H    F ++ + +L    F++N L+ GY  A  + +   +Y  M  
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDEALCLYHRMLW 180

Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
             V PD  T+  +LR      +L R  +++  V       +  ++ A+I  Y KC     
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG---D 237

Query: 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME-------KSINDAFEHKTSVTT 402
           +     +   +P ++   W N ++   +   +CLE +E        S++      TSV +
Sbjct: 238 VVSARLVFDRMPRRDCISW-NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296

Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
                C +    R    +     VK   +    +C SL      MY S     E E V  
Sbjct: 297 A----CELLGDERL-GREMHGYVVKTGFAVDVSVCNSLIQ----MYLSLGSWGEAEKVFS 347

Query: 463 EME 465
            ME
Sbjct: 348 RME 350

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
           VTYNTLI    +   V+     F+E+K+  + P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
           N H K + ++N LL  Y+ +G       LF  +  E+ ++P  VT+ +L+    R  +V 
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMVT 606

Query: 244 HMEAAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
                F  +++  +++PN+  Y  ++     A   GK+ E Y  +   P+ PD   +  L
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRA---GKLTEAYNFINKMPITPDPAVWGAL 663

Query: 303 LRG 305
           L  
Sbjct: 664 LNA 666

Length = 857

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.79
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.76
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.74
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.72
PRK14574	822	hmsH outer membrane protein; Provisional	99.71
PRK14574	822	hmsH outer membrane protein; Provisional	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.6
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.59
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.58
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.58
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.57
KOG2003	840	consensus TPR repeat-containing protein [General f	99.54
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.52
KOG2076	895	consensus RNA polymerase III transcription factor	99.52
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.52
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.49
KOG2076	895	consensus RNA polymerase III transcription factor	99.47
PF13041	50	PPR_2: PPR repeat family	99.47
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.47
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.45
PF13041	50	PPR_2: PPR repeat family	99.45
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.44
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.41
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.37
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.36
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.35
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.33
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.31
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.3
PRK12370	553	invasion protein regulator; Provisional	99.29
PRK12370	553	invasion protein regulator; Provisional	99.28
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.26
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.22
KOG2003	840	consensus TPR repeat-containing protein [General f	99.2
KOG1129	478	consensus TPR repeat-containing protein [General f	99.17
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.15
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.14
KOG1129	478	consensus TPR repeat-containing protein [General f	99.13
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.07
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.06
PRK11189	296	lipoprotein NlpI; Provisional	99.05
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.04
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.02
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.01
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.0
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.98
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.98
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.96
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.96
PRK11189	296	lipoprotein NlpI; Provisional	98.93
PF12854	34	PPR_1: PPR repeat	98.91
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.91
PF12854	34	PPR_1: PPR repeat	98.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.88
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.79
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.78
PRK04841	903	transcriptional regulator MalT; Provisional	98.77
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.73
KOG1125	579	consensus TPR repeat-containing protein [General f	98.67
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.6
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.6
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.59
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.56
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.55
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.54
KOG1125	579	consensus TPR repeat-containing protein [General f	98.53
PRK04841	903	transcriptional regulator MalT; Provisional	98.53
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.51
PLN02789	320	farnesyltranstransferase	98.51
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.51
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.49
PLN02789	320	farnesyltranstransferase	98.48
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.48
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.48
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.45
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.43
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.42
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.41
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.4
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.39
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.38
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.36
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.36
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.36
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.35
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.34
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.32
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.29
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.29
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.27
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.27
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.26
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.24
PRK15359	144	type III secretion system chaperone protein SscB;	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.2
PRK15359	144	type III secretion system chaperone protein SscB;	98.2
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.17
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.14
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.14
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.14
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.13
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.13
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.1
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.09
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.06
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.05
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.05
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.04
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.03
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.02
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.0
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.97
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.91
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.87
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.84
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.79
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.78
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.76
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.63
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.62
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.61
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.61
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.6
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.6
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.59
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.56
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.51
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.51
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.49
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.43
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.42
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.35
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.34
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.3
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.28
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.26
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.04
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.02
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.01
KOG0553	304	consensus TPR repeat-containing protein [General f	96.99
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.92
PRK10803	263	tol-pal system protein YbgF; Provisional	96.92
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.88
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.81
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.81
PF12688	120	TPR_5: Tetratrico peptide repeat	96.8
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.8
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.78
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.77
KOG3941	406	consensus Intermediate in Toll signal transduction	96.76
PF12688	120	TPR_5: Tetratrico peptide repeat	96.7
PF13371	73	TPR_9: Tetratricopeptide repeat	96.68
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.57
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.56
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.55
KOG0553	304	consensus TPR repeat-containing protein [General f	96.54
PRK10803	263	tol-pal system protein YbgF; Provisional	96.53
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.48
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.44
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.44
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.44
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.4
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.4
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.33
PF13371	73	TPR_9: Tetratricopeptide repeat	96.3
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.24
KOG3941	406	consensus Intermediate in Toll signal transduction	96.15
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.12
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.08
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.03
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.93
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.93
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.93
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.9
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.85
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.84
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.84
PRK15331	165	chaperone protein SicA; Provisional	95.76
PRK15331	165	chaperone protein SicA; Provisional	95.64
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.54
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.52
KOG1585	308	consensus Protein required for fusion of vesicles	95.51
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.49
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.34
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.18
KOG4555	175	consensus TPR repeat-containing protein [Function	95.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.03
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.87
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.84
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.82
PF13428	44	TPR_14: Tetratricopeptide repeat	94.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.5
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.33
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.21
PF13929	292	mRNA_stabil: mRNA stabilisation	94.2
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.2
PF13512	142	TPR_18: Tetratricopeptide repeat	94.14
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.13
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.07
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.04
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.96
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.8
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.79
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.66
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.65
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.57
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.56
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.44
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.43
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.19
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.11
KOG4555	175	consensus TPR repeat-containing protein [Function	93.07
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.07
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.06
PF13428	44	TPR_14: Tetratricopeptide repeat	92.61
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.26
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	91.86
PF13431	34	TPR_17: Tetratricopeptide repeat	91.82
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.38
PF13512	142	TPR_18: Tetratricopeptide repeat	91.22
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.03
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.66
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.51
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.46
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.42
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.96
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.53
PRK11906	458	transcriptional regulator; Provisional	89.48
KOG1585	308	consensus Protein required for fusion of vesicles	89.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.21
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.19
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.17
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.99
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.58
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	88.52
PRK11906	458	transcriptional regulator; Provisional	88.05
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.01
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.82
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.29
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.94
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	86.65
PF13431	34	TPR_17: Tetratricopeptide repeat	86.51
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.32
PF13929	292	mRNA_stabil: mRNA stabilisation	85.94
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.83
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	85.79
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.74
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	85.57
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.04
PRK11619	644	lytic murein transglycosylase; Provisional	85.0
PF14669	233	Asp_Glu_race_2: Putative aspartate racemase	84.89
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.88
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	84.56
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.52
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.75
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.43
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	82.32
PF13762	145	MNE1: Mitochondrial splicing apparatus component	82.11
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	81.99
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.85
KOG1550	552	consensus Extracellular protein SEL-1 and related	80.58
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.55
KOG2610	491	consensus Uncharacterized conserved protein [Funct	80.51
COG0457	291	NrfG FOG: TPR repeat [General function prediction	80.47
KOG1258	577	consensus mRNA processing protein [RNA processing	80.26
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.17
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.06

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.1e-60  Score=494.98  Aligned_cols=408  Identities=16%  Similarity=0.154  Sum_probs=359.6

Q ss_pred             HhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010292           92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI  169 (513)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~  169 (513)
                      .++..+...+++.++..+.      .|+..+|+.+|.+|+  ++.+.|.++|+.|.+.   |+.||..+|+.+|.+|++.
T Consensus       415 ~~~~~g~~~eAl~lf~~M~------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~---Gl~pD~~tynsLI~~y~k~  485 (1060)
T PLN03218        415 ACKKQRAVKEAFRFAKLIR------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA---GLKADCKLYTTLISTCAKS  485 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhC
Confidence            3455666777777777664      389999999999995  4778899999988774   5889999999999999999


Q ss_pred             CCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010292          170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA  248 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  248 (513)
                      |++++|.++|++|.+.|+ ||..+|+.||.+|++.|++++|+++|++|.+. |+.||..+||.||.+|++.|++++|.++
T Consensus       486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~l  564 (1060)
T PLN03218        486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDV  564 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999998 59999999999999999999999999999975 9999999999999999999999999999


Q ss_pred             HHHHHH--CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292          249 FQEIKD--SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       249 ~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      |++|.+  .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus       565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G  644 (1060)
T PLN03218        565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG  644 (1060)
T ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            999986  678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010292          327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR  404 (513)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  404 (513)
                      +.||..+|+.+|++|++.|++++|.++++.+.+   .+..+.  +++.+|.+|++.|++++|.++|++|...+..| +..
T Consensus       645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k---~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvv  720 (1060)
T PLN03218        645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK---QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVS  720 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHH
Confidence            999999999999999999988877666655554   333332  35679999999999999999999998876655 577


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      +|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|++++..|.
T Consensus       721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~  800 (1060)
T PLN03218        721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL  800 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999986543


Q ss_pred             h----c-------------------CCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010292          485 T----C-------------------GQRRKVNQVLGLMCKNGYDVPVNAFPS  513 (513)
Q Consensus       485 ~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~S  513 (513)
                      +    .                   +..++|..+|++|++.|+.||..||++
T Consensus       801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~  852 (1060)
T PLN03218        801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ  852 (1060)
T ss_pred             HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence            2    1                   224679999999999999999988863

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.4e-60  Score=489.42  Aligned_cols=416  Identities=15%  Similarity=0.156  Sum_probs=371.4

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010292           84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTK  161 (513)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  161 (513)
                      .+..++..+++ .++..+++++++++.... -..++...+..++..|+  +..+.|..+|+.|.       .||..+|+.
T Consensus       372 ~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~  442 (1060)
T PLN03218        372 EYIDAYNRLLR-DGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNM  442 (1060)
T ss_pred             HHHHHHHHHHH-CcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHH
Confidence            44455666643 344444444444443221 12467777788888884  46778888887663       289999999


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      +|.+|++.|+++.|.++|++|.+.|+. |..+|+.||.+|++.|++++|.++|++|.+. |+.||..||+.||.+|++.|
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCc
Confidence            999999999999999999999999985 9999999999999999999999999999986 99999999999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010292          241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPVMPDTNTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      ++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|..  .|+.||..+|+++|.+|++.|++++|.++
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999976  68999999999999999999999999999


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292          319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      |+.|.+.|+.|+..+|+.+|.+|++.|++++|.+++   .+|...++.+.  +++.++.+|++.|++++|.++|++|.+.
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf---~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY---DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999888665554   45555554443  4668999999999999999999999998


Q ss_pred             CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010292          397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF  476 (513)
Q Consensus       397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  476 (513)
                      +..+ +..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus       679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty  757 (1060)
T PLN03218        679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY  757 (1060)
T ss_pred             CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            7765 577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010292          477 WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS  513 (513)
Q Consensus       477 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~S  513 (513)
                      +.++.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns  794 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC  794 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            9999999999999999999999999999999988864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.4e-57  Score=467.73  Aligned_cols=405  Identities=11%  Similarity=0.138  Sum_probs=348.2

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010292           84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTK  161 (513)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  161 (513)
                      .++.++..+. ..+...++++++..+... .+..||..+|+.++.+|++  ..+.+.+++..|.+.   |+.||..+|+.
T Consensus        89 ~~~~~i~~l~-~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~---g~~~~~~~~n~  163 (697)
T PLN03081         89 SLCSQIEKLV-ACGRHREALELFEILEAG-CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS---GFEPDQYMMNR  163 (697)
T ss_pred             eHHHHHHHHH-cCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCcchHHHHH
Confidence            4566666663 344455555555554321 1346899999999999964  677788999888774   58899999999


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----------------  225 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------------  225 (513)
                      ++.+|++.|++++|.++|++|.+   +|..+||++|.+|++.|++++|+++|++|.+. |+.||                
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~  239 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGS  239 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCc
Confidence            99999999999999999999976   58899999999999999999999999999764 55555                


Q ss_pred             -------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292          226 -------------------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       226 -------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                                         ..+||+||++|++.|++++|.++|++|.+    +|..+||.||.+|++.|++++|.++|++
T Consensus       240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~  315 (697)
T PLN03081        240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE  315 (697)
T ss_pred             HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                               44557788889999999999999999964    7999999999999999999999999999


Q ss_pred             HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010292          287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR  366 (513)
Q Consensus       287 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  366 (513)
                      |.+.|+.||..||++++.+|++.|++++|.++++.|.+.|+.+|..+|++|+++|+++|++++|   .++|++|..++..
T Consensus       316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A---~~vf~~m~~~d~~  392 (697)
T PLN03081        316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA---RNVFDRMPRKNLI  392 (697)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH---HHHHHhCCCCCee
Confidence            9999999999999999999999999999999999999999999999999999999999987755   4556677778887


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcccHhhHHHHH
Q 010292          367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-AGWRLCRSLYHSKM  445 (513)
Q Consensus       367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li  445 (513)
                      +| + .||.+|++.|+.++|.++|++|.+.|..| +..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|
T Consensus       393 t~-n-~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li  469 (697)
T PLN03081        393 SW-N-ALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI  469 (697)
T ss_pred             eH-H-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence            77 3 69999999999999999999999987766 577899999999999999999999999975 69999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-CCCCC
Q 010292          446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP-VNAFP  512 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~  512 (513)
                      ++|++.|++++|.+++++|   ++.|+..+|++|+.+|...|+++.|.++++++.  ++.|+ ..+|+
T Consensus       470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~  532 (697)
T PLN03081        470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYV  532 (697)
T ss_pred             HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchH
Confidence            9999999999999998876   478999999999999999999999999999986  44554 44553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.4e-55  Score=454.69  Aligned_cols=370  Identities=12%  Similarity=0.135  Sum_probs=317.5

Q ss_pred             cccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc------
Q 010292          115 RRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH------  186 (513)
Q Consensus       115 ~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------  186 (513)
                      |..||..+++.++..++  +..+.|.++|+.|.       .||..+|+.+|.+|++.|++++|.++|++|.+.|      
T Consensus       153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~  225 (697)
T PLN03081        153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR  225 (697)
T ss_pred             CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence            34667777777777664  35566666666552       2466677777777777777777777777765544      


Q ss_pred             -----------------------------C-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          187 -----------------------------L-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       187 -----------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                                                   . +|..+||+||.+|++.|++++|.++|++|.     .+|.++||++|.+|
T Consensus       226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y  300 (697)
T PLN03081        226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGY  300 (697)
T ss_pred             hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHH
Confidence                                         3 256677899999999999999999999996     36999999999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      ++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus       301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~  380 (697)
T PLN03081        301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR  380 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAF  394 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~  394 (513)
                      ++|++|.+    +|..+||+||.+|++.|+.++|.++++   +|...++.|.  ++..++.+|++.|.+++|.++|++|.
T Consensus       381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~---~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE---RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999975    688999999999999998876655554   4444454444  35589999999999999999999998


Q ss_pred             hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010292          395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK  474 (513)
Q Consensus       395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  474 (513)
                      +.....|+..+|+.++++|++.|++++|.+++++|   ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..
T Consensus       454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~  529 (697)
T PLN03081        454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLN  529 (697)
T ss_pred             HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCc
Confidence            76455556788999999999999999999998765   688999999999999999999999999999997654 33578


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292          475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP  507 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  507 (513)
                      +|..|++.|++.|++++|.+++++|.+.|++..
T Consensus       530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            999999999999999999999999999999644

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.8e-56  Score=468.20  Aligned_cols=384  Identities=17%  Similarity=0.182  Sum_probs=281.0

Q ss_pred             cccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhH
Q 010292          115 RRHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT  192 (513)
Q Consensus       115 ~~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  192 (513)
                      +..||..+|+.++++|++  ....+.+++..+.+   .|+.||..+|+.||.+|++.|++++|.++|++|.+   +|..+
T Consensus       182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s  255 (857)
T PLN03077        182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR---FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCIS  255 (857)
T ss_pred             CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH---cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcch
Confidence            345555555555555543  23334444444443   34566666777788888888888888888888865   37778


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-------------  259 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------  259 (513)
                      ||++|.+|++.|++++|+++|++|... |+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.|             
T Consensus       256 ~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~  334 (857)
T PLN03077        256 WNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL  334 (857)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence            888888888888888888888888764 777776666666666655555555555555555555444             


Q ss_pred             ------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010292          260 ------------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL  321 (513)
Q Consensus       260 ------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  321 (513)
                                        |..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.
T Consensus       335 k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~  414 (857)
T PLN03077        335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL  414 (857)
T ss_pred             hcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence                              55555666666666677777777777788888888888888888888888888888888888


Q ss_pred             HHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010292          322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT  401 (513)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (513)
                      |.+.|..++..+|++||++|++.|++++   +.++|++|.+++..+|.  .+|.+|++.|+.++|.++|++|...  ..|
T Consensus       415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~---A~~vf~~m~~~d~vs~~--~mi~~~~~~g~~~eA~~lf~~m~~~--~~p  487 (857)
T PLN03077        415 AERKGLISYVVVANALIEMYSKCKCIDK---ALEVFHNIPEKDVISWT--SIIAGLRLNNRCFEALIFFRQMLLT--LKP  487 (857)
T ss_pred             HHHhCCCcchHHHHHHHHHHHHcCCHHH---HHHHHHhCCCCCeeeHH--HHHHHHHHCCCHHHHHHHHHHHHhC--CCC
Confidence            8888888899999999999999997775   45556778888887773  6999999999999999999999863  455


Q ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc------------------------------ccHhhHHHHHHHHHhc
Q 010292          402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR------------------------------LCRSLYHSKMVMYASQ  451 (513)
Q Consensus       402 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------------------~~~~~~~~li~~~~~~  451 (513)
                      +..||+.++.+|++.|+.+.+.+++..+.+.|+.                              +|..+||++|.+|++.
T Consensus       488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~  567 (857)
T PLN03077        488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH  567 (857)
T ss_pred             CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence            6778888888777777777777777777666654                              4556666667777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCCCCCCCC
Q 010292          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYDVPVNAFP  512 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~  512 (513)
                      |+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+
T Consensus       568 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~  629 (857)
T PLN03077        568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA  629 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            7777777777777777777777777777777777777777777777776 567777776664

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.8e-54  Score=456.91  Aligned_cols=428  Identities=14%  Similarity=0.120  Sum_probs=342.4

Q ss_pred             hhhhhhcccCCCCCChhhhhh-----hHHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcC--
Q 010292           60 PTLVRLLSETLTYPDARVRKD-----LTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS--  132 (513)
Q Consensus        60 ~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~--  132 (513)
                      +.++..+++.+....+....+     ...+++.++..+++ .+...++++++.++..  .+..||..+|+.++.+|+.  
T Consensus       226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~-~g~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g  302 (857)
T PLN03077        226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-NGECLEGLELFFTMRE--LSVDPDLMTITSVISACELLG  302 (857)
T ss_pred             hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHh-CCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcC
Confidence            677777777776555443322     12356777777644 4455566666665532  2568899999999999854  


Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      +.+.|.+++..+.+.   |+.||..+|+.||.+|++.|++++|.++|++|..   +|..+||++|.+|++.|++++|+++
T Consensus       303 ~~~~a~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~l  376 (857)
T PLN03077        303 DERLGREMHGYVVKT---GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALET  376 (857)
T ss_pred             ChHHHHHHHHHHHHh---CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence            677788898888774   4889999999999999999999999999999875   4888999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010292          213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV  292 (513)
Q Consensus       213 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  292 (513)
                      |++|.+. |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||.||.+|++.|++++|.++|++|.+   
T Consensus       377 f~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---  452 (857)
T PLN03077        377 YALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---  452 (857)
T ss_pred             HHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence            9999876 899999999999999999999999999999999999999999999999999999999999999998865   


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 010292          293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL  372 (513)
Q Consensus       293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  372 (513)
                       +|..+|+.+|.+|++.|+.++|.++|++|.+ +..||..+|+.++.+|++.|.++.+.+++..+.+..-... ...++.
T Consensus       453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~-~~~~na  529 (857)
T PLN03077        453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD-GFLPNA  529 (857)
T ss_pred             -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc-ceechH
Confidence             5777888888888888888888888888875 4788888888888888888877777777665554332211 122346


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      ||.+|++.|++++|.++|+++      .++..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g  603 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG  603 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence            888888888888888888776      23566788888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010292          453 RVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP  512 (513)
Q Consensus       453 ~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  512 (513)
                      ++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|   .++||..+|+
T Consensus       604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~  661 (857)
T PLN03077        604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG  661 (857)
T ss_pred             hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence            8888888888887 6788888888888888888888888888888877   3677776664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=6.1e-22  Score=213.72  Aligned_cols=331  Identities=11%  Similarity=0.039  Sum_probs=171.0

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...|.+.|++++|.++++.+.+..+.+...|..+..+|...|++++|++.|+++.+.  .+.+...+..+..++
T Consensus       568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~  645 (899)
T TIGR02917       568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAY  645 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence            334444444444444444444444444433334444444444444445555555554444432  122333444444444


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      .+.|++++|..+|+++.+... .+..++..+...+...|++++|.++++.+.+.+ ..+...+..+...+...|++++|.
T Consensus       646 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~  723 (899)
T TIGR02917       646 AVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI  723 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence            445555555555544444321 234444445555555555555555555554433 223444445555555555555555


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292          317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      +.++.+.+.+  |+..++..+..++.+.|++++|.+.++.+.+..+.+...  ...+...|...|++++|.++|+++.+.
T Consensus       724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL--RTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            5555555432  222344445555555555555544444333333222221  223555555666666666666666553


Q ss_pred             CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010292          397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF  476 (513)
Q Consensus       397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  476 (513)
                      .  |.+..+++.+...+...|+ .+|+.+++++.+.... +...+..+...+...|++++|..+|+++.+.+. .+..++
T Consensus       800 ~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~  874 (899)
T TIGR02917       800 A--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIR  874 (899)
T ss_pred             C--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHH
Confidence            2  3344555666666666666 5566666665543321 334455566666777777777777777776653 366777


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          477 WIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       477 ~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      ..+..++.+.|++++|.+++++|+
T Consensus       875 ~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       875 YHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHh
Confidence            777777777777777777777765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=3.8e-21  Score=207.55  Aligned_cols=356  Identities=10%  Similarity=-0.000  Sum_probs=236.8

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++++.|.+.++.+.+.    .+.+..++..+...+.+.|+.++|..+|+++.+.++.+...+..++..|.+.|++++|.+
T Consensus       513 g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  588 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTI----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA  588 (899)
T ss_pred             CCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence            4555566655555442    233555666666666666666666666666665554455566666666666666666666


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      +++.+...  .+.+...|..+..++.+.|++++|...|+++.+... .+...+..+..++.+.|++++|.++|+++.+..
T Consensus       589 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  665 (899)
T TIGR02917       589 ILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK  665 (899)
T ss_pred             HHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            66666642  345566667777777777777777777777665432 245566666677777777777777777766532


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                       +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++......+.. ..  ..
T Consensus       666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~  740 (899)
T TIGR02917       666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QN--AI  740 (899)
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hH--HH
Confidence             2246666777777777777777777777766653 3455566667777777777776666665554443333 11  22


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      .+..++...|++++|.+.+.++.+.  .|.+...+..+...|...|++++|.++|+++.+... .+...++.+...+.+.
T Consensus       741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence            4677777778888888777777764  344566677777788888888888888888776553 3566777778888888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      |+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.
T Consensus       818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            88 77888888877654 34556677788888888999999999988887764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=6.6e-21  Score=184.79  Aligned_cols=301  Identities=14%  Similarity=0.070  Sum_probs=204.8

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 010292          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLL  241 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~  241 (513)
                      .+...|++++|...|+++.+.++.+..+|..+...+...|++++|.++++.+... +..++   ...+..+...|.+.|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCCC
Confidence            4456677777888888777766556677777777777777788888777777653 21111   2456667777777777


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      ++.|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..++    ...+..+...+.+.|++++|.+
T Consensus       123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            7777777777775432 3566777777777777777777777777766442221    1234455556666677777777


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      +++++.+.. +.+...+.                                    .+...+.+.|++++|.++|+++....
T Consensus       202 ~~~~al~~~-p~~~~~~~------------------------------------~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        202 LLKKALAAD-PQCVRASI------------------------------------LLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHhHC-cCCHHHHH------------------------------------HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            766665532 11111111                                    35666777777777777777777642


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW  477 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  477 (513)
                      ... ...+++.++.+|...|++++|...++++.+..  |+...+..++..+.+.|++++|..+++++.+.  .|+..++.
T Consensus       245 p~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~  319 (389)
T PRK11788        245 PEY-LSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH  319 (389)
T ss_pred             hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence            211 23456777888888888888888888887654  55556677888888888888888888887765  47777888


Q ss_pred             HHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCCC
Q 010292          478 IMYYAYAT---CGQRRKVNQVLGLMCKNGYDVPVN  509 (513)
Q Consensus       478 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~  509 (513)
                      .++..+..   .|+.+++..++++|.+.+++|+..
T Consensus       320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            77777664   457888888888888888777664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=4.2e-20  Score=179.21  Aligned_cols=304  Identities=13%  Similarity=0.071  Sum_probs=229.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC----CHhHHHHHHH
Q 010292          123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK----TIGTYNALLG  198 (513)
Q Consensus       123 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~li~  198 (513)
                      +..+.....++.+.|...|+.+.+..    +.+..++..+...+.+.|++++|..+++.+...+..    ....+..+..
T Consensus        40 ~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~  115 (389)
T PRK11788         40 FKGLNFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ  115 (389)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            44555555789999999999988752    346778999999999999999999999999876432    1357889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHc
Q 010292          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTA  274 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~  274 (513)
                      .|.+.|++++|..+|+++.+.  -+.+..+++.++..+.+.|++++|.+.++.+.+.+..+..    ..|..+...+.+.
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        116 DYLKAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            999999999999999999863  3457789999999999999999999999999986644322    2456677888999


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010292          275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE  354 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  354 (513)
                      |++++|.++|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.+......+++.                  
T Consensus       194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~------------------  254 (389)
T PRK11788        194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK------------------  254 (389)
T ss_pred             CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH------------------
Confidence            99999999999998753 22467888899999999999999999999887532111222333                  


Q ss_pred             HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292          355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  434 (513)
                                        ++.+|...|++++|...++++.+...  . ...+..+...+.+.|++++|..+++++.+.  
T Consensus       255 ------------------l~~~~~~~g~~~~A~~~l~~~~~~~p--~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--  311 (389)
T PRK11788        255 ------------------LMECYQALGDEAEGLEFLRRALEEYP--G-ADLLLALAQLLEEQEGPEAAQALLREQLRR--  311 (389)
T ss_pred             ------------------HHHHHHHcCCHHHHHHHHHHHHHhCC--C-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence                              45556666666666666666665422  2 223466777777778888888877776654  


Q ss_pred             cccHhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 010292          435 RLCRSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKK  474 (513)
Q Consensus       435 ~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~  474 (513)
                      .|+...++.++..+..   .|+.+++..++++|.+++++|++.
T Consensus       312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            4666677766666654   457777888888777776666654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=9.9e-18  Score=170.70  Aligned_cols=323  Identities=6%  Similarity=-0.063  Sum_probs=254.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++++.|+.+++.+...    .+-+...+..++.++...|++++|.+.|+++.+..+.+...|..+...+...|++++|+
T Consensus        55 ~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai  130 (656)
T PRK15174         55 KDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA  130 (656)
T ss_pred             cCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            57888999998877664    33356667777777788999999999999999987778889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      +.|++..+.  -+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.+.+.
T Consensus       131 ~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~  206 (656)
T PRK15174        131 DLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF  206 (656)
T ss_pred             HHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence            999999864  2345678888999999999999999999988765443 23334333 3478899999999999998775


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCcc
Q 010292          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR----IKKIEALMRLIPEKEYR  366 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~  366 (513)
                      .-.++...+..+..++...|++++|...++...+.. +.+...+..+...|...|++++    |...++...+..+....
T Consensus       207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~  285 (656)
T PRK15174        207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR  285 (656)
T ss_pred             CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence            433445556666788899999999999999998764 4467788889999999999885    55555555555544443


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH-hhHHHHH
Q 010292          367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR-SLYHSKM  445 (513)
Q Consensus       367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li  445 (513)
                      .+  ..+...+...|++++|...+++.+..  .|.+...+..+...+...|++++|.+.++.+.+..  |+. ..+..+.
T Consensus       286 a~--~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a  359 (656)
T PRK15174        286 IV--TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA  359 (656)
T ss_pred             HH--HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence            33  25888999999999999999998884  35556667788899999999999999999887654  333 3344456


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC
Q 010292          446 VMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      .++...|+.++|...|++..+..
T Consensus       360 ~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        360 AALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            77889999999999999988764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=3.6e-17  Score=167.12  Aligned_cols=359  Identities=9%  Similarity=-0.064  Sum_probs=278.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++++.|...|+...+     ..|+...|..+..+|.+.|++++|++.++...+.++.+...|..+..+|...|++++|+
T Consensus       140 ~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~  214 (615)
T TIGR00990       140 NKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL  214 (615)
T ss_pred             cCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3688899999988765     45678889999999999999999999999999887768889999999999999999998


Q ss_pred             HHHHHHHHhCCC---------------------------CC----CHHHHHHH---------------------------
Q 010292          211 SLFRDLKKEANI---------------------------SP----SIVTYNTL---------------------------  232 (513)
Q Consensus       211 ~~~~~m~~~~g~---------------------------~p----~~~~~~~l---------------------------  232 (513)
                      .-|.......+.                           .|    ........                           
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (615)
T TIGR00990       215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ  294 (615)
T ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence            766544321110                           00    00000000                           


Q ss_pred             HHHH------HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 010292          233 ISVF------GRLLLVDHMEAAFQEIKDSN-LSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLL  303 (513)
Q Consensus       233 i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll  303 (513)
                      +...      ...+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++..+.  .|+ ...|..+.
T Consensus       295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la  372 (615)
T TIGR00990       295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRA  372 (615)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence            0000      12257889999999998764 223 4567888888999999999999999998874  455 66888899


Q ss_pred             HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292          304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL  383 (513)
Q Consensus       304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  383 (513)
                      ..+...|++++|...|+...+.. +.+..+|..+...+...|++++|...++...++.+.....+.  .+...+.+.|++
T Consensus       373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~--~la~~~~~~g~~  449 (615)
T TIGR00990       373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI--QLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH--HHHHHHHHCCCH
Confidence            99999999999999999988763 456788899999999999999999988888777666555543  478888999999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh------hHHHHHHHHHhcCCHHHH
Q 010292          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS------LYHSKMVMYASQRRVEEM  457 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A  457 (513)
                      ++|+..|++.+..  .|.+...++.+...+...|++++|.+.+++..+.....+..      .++.....+...|++++|
T Consensus       450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence            9999999998874  45566778899999999999999999999987654321111      122222334457999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+++++....+ +.+...+..+...+.+.|++++|.++|++..+.
T Consensus       528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999988765 345567889999999999999999999988654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=6.3e-17  Score=164.85  Aligned_cols=293  Identities=10%  Similarity=-0.017  Sum_probs=205.6

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH
Q 010292          128 KQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD  207 (513)
Q Consensus       128 ~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~  207 (513)
                      ....++.+.|.+.++.+...    .|-+...+..+...+.+.|++++|.+.+++..+..+.+...+..+...+...|+++
T Consensus        86 ~l~~g~~~~A~~~l~~~l~~----~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~  161 (656)
T PRK15174         86 PLASSQPDAVLQVVNKLLAV----NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKEL  161 (656)
T ss_pred             HhhcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChH
Confidence            33366788888888877664    23456677777788888888888888888888766557778888888888888888


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010292          208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       208 ~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  287 (513)
                      +|...++.+...  .+.+...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..|++.
T Consensus       162 eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a  238 (656)
T PRK15174        162 QAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA  238 (656)
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            888888877653  12233333333 346777888888888888776543344555555667778888888888888888


Q ss_pred             HcCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 010292          288 KAGPVMPDTNTYLLLLRGYAHSGNLPR----MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK  363 (513)
Q Consensus       288 ~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  363 (513)
                      .... .-+...+..+...+...|++++    |...++...+.. +.+...+..+...+.+.|++++|...++......+.
T Consensus       239 l~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~  316 (656)
T PRK15174        239 LARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD  316 (656)
T ss_pred             HhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            7653 2246677778888888888875    778888777753 346677778888888888888887777666665544


Q ss_pred             CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292          364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       364 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  433 (513)
                      ....+  ..+...+...|++++|...|+++.....  .+...+..+..++...|+.++|...|+...+..
T Consensus       317 ~~~a~--~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        317 LPYVR--AMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             CHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            43333  2467778888888888888888776433  233334445566778888888888888776543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=1.3e-15  Score=136.21  Aligned_cols=341  Identities=15%  Similarity=0.166  Sum_probs=211.9

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      |.+..+|..+|.++++--..+.|.+++++-.....+ +..+||.+|.+-.-...    .+++.+|... .+.||..|+|+
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfNa  278 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFNA  278 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHHH
Confidence            446677888888888888888888888877765554 77788887766443322    6777777765 77888888888


Q ss_pred             HHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHc----CCCCC----CHHH
Q 010292          232 LISVFGRLLLVDH----MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKA----GPVMP----DTNT  298 (513)
Q Consensus       232 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~p----~~~t  298 (513)
                      ++++.++.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..    +.++|    |...
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            8888888886654    45677778888888888888888887777776644 3444444432    22322    4566


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc----cCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch--
Q 010292          299 YLLLLRGYAHSGNLPRMEKIYELVKHH----VDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--  369 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--  369 (513)
                      |...+..|.+..+.+.|.++..-....    .+.++.   ..|..+....|...   .....+..+..+.+.-+.+..  
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e---s~~~~~~~Y~~lVP~~y~p~~~~  435 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME---SIDVTLKWYEDLVPSAYFPHSQT  435 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccceecCCchh
Confidence            777777777777777777777665542    123321   23445555555544   333456666666665544442  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-cH--------HH-----HHHHHH-------H
Q 010292          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-AV--------DK-----LANFVK-------R  428 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~~-----a~~~~~-------~  428 (513)
                      ...++.+....|+++-.-+++..+..-|.... ..+..-++..+++.+ +.        ..     |..+++       +
T Consensus       436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R  514 (625)
T KOG4422|consen  436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR  514 (625)
T ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            22455666677777777777777777654332 112223334444433 11        10     111111       2


Q ss_pred             HHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292          429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI----DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       429 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      |.+..+  .....+.+...+.+.|+.++|.+++.-+.+++-    .|......-+++...+......|..+++-|...+.
T Consensus       515 ~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  515 QRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL  592 (625)
T ss_pred             HHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence            222233  344466777778888888888888888855432    23334444666777778888888888888866554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.81  E-value=4.7e-15  Score=161.61  Aligned_cols=328  Identities=8%  Similarity=-0.012  Sum_probs=197.9

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010292          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH  244 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~  244 (513)
                      .+.+.|++++|.+.|++..+..+.+...+..+...+...|++++|++.|++..+.  -+.+...+..+...+. .++.++
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~  436 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEK  436 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHH
Confidence            4456666666666666666655445556666666666666666666666666643  1222333333333332 122333


Q ss_pred             HHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010292          245 MEAAFQEIKDSNL--------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       245 A~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      |+.+++.+.....        ......+..+...+...|++++|++.|++..+.  .| +...+..+...+.+.|++++|
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3333322211000        000112344555555666666666666666553  23 244555556666666666666


Q ss_pred             HHHHHHHHhccCCCcHHHHH--------------------------------------------HHHHHHHhcCChhHHH
Q 010292          316 EKIYELVKHHVDGKEFPLIR--------------------------------------------AMICAYSKCSVTDRIK  351 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~~~g~~~~a~  351 (513)
                      ...++++.+.. +.+...+.                                            .+...+...|+.++|.
T Consensus       515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~  593 (1157)
T PRK11447        515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE  593 (1157)
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence            66666655432 11222222                                            2233445555555544


Q ss_pred             HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010292          352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  431 (513)
                      .+++   . .+.+...  ...+...+.+.|++++|++.|++.++.  .|.+...+..+...+...|++++|++.++.+.+
T Consensus       594 ~~l~---~-~p~~~~~--~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        594 ALLR---Q-QPPSTRI--DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHH---h-CCCCchH--HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            4433   1 1222222  235788889999999999999999884  455677788999999999999999999998775


Q ss_pred             cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCC
Q 010292          432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI--DC---SKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYD  505 (513)
Q Consensus       432 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~  505 (513)
                      ... -+...+..+..++...|++++|.++++++....-  .|   +...+..+...+...|++++|++.|++.. ..|+.
T Consensus       666 ~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~  744 (1157)
T PRK11447        666 TAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT  744 (1157)
T ss_pred             cCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence            432 2445566777888899999999999999886532  22   23466677888999999999999999874 44565


Q ss_pred             CC
Q 010292          506 VP  507 (513)
Q Consensus       506 p~  507 (513)
                      |.
T Consensus       745 ~~  746 (1157)
T PRK11447        745 PT  746 (1157)
T ss_pred             CC
Confidence            43

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.80  E-value=7.1e-15  Score=160.18  Aligned_cols=328  Identities=11%  Similarity=-0.012  Sum_probs=222.5

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH------------
Q 010292          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN------------  230 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~------------  230 (513)
                      ...+...|++++|+..|++..+..+.+...+..+...+.+.|++++|+..|++..+...-.++...|.            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            34455677777777777777776555677777777777777777777777777765311111111111            


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHH----------
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTY----------  299 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~----------  299 (513)
                      .....+.+.|++++|+..|++..+... .+...+..+...+...|++++|++.|++..+.  .|+ ...+          
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence            123345667777777777777776533 24556666677777777777777777776653  222 2222          


Q ss_pred             --------------------------------HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292          300 --------------------------------LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       300 --------------------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                                                      ..+...+...|++++|.+.+++..+.. +.+...+..+...|.+.|++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence                                            223344567899999999999988763 34566778888999999999


Q ss_pred             hHHHHHHHHHHhCCCCCcccchHH-------------------------------------------HHHHHHHhcCCHH
Q 010292          348 DRIKKIEALMRLIPEKEYRPWLNV-------------------------------------------LLIRVYAKEDCLE  384 (513)
Q Consensus       348 ~~a~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~li~~~~~~~~~~  384 (513)
                      ++|...++.+.+..+.+.... +.                                           .+...+...|+.+
T Consensus       512 ~~A~~~l~~al~~~P~~~~~~-~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        512 SQADALMRRLAQQKPNDPEQV-YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            998888777665544333222 11                                           1122344445555


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM  464 (513)
Q Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  464 (513)
                      +|.++++      ..|.+...+..+...+.+.|++++|++.+++..+... .+...+..+...|...|++++|++.++..
T Consensus       591 eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        591 EAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5555544      1233444566788888999999999999999887653 25777888999999999999999999988


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      .+.. +.+...+..+..++...|++++|.++++++.+..
T Consensus       664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            7653 3455667778889999999999999999987653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.80  E-value=1.2e-14  Score=151.44  Aligned_cols=393  Identities=10%  Similarity=-0.026  Sum_probs=270.7

Q ss_pred             hcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC
Q 010292           94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN  171 (513)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~  171 (513)
                      ...++..++...+.+....   ...+...+..+...+  .++.+.|..+++...+.    .|.+...+..+..++...|+
T Consensus        26 ~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~   98 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVH---MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQ   98 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence            3445556666666554310   122232333333333  46778888888877664    24466777788888888999


Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292          172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE  251 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  251 (513)
                      +++|+..+++..+..+.+.. +..+..++...|+.++|+..++++.+.  -+-+...+..+..++...|..+.|++.++.
T Consensus        99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~  175 (765)
T PRK10049         99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDD  175 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence            99999999988887666777 888888888899999999999988864  233455666677778888888888888876


Q ss_pred             HHHCCCCCCH------HHHHHHHHHHH-----HccCH---HHHHHHHHHHHcC-CCCCCHH-HH----HHHHHHHHhcCC
Q 010292          252 IKDSNLSPNV------FTYNYLIAGYM-----TAWMW---GKVEEIYQMMKAG-PVMPDTN-TY----LLLLRGYAHSGN  311 (513)
Q Consensus       252 m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-t~----~~ll~~~~~~g~  311 (513)
                      ...   .|+.      .....++....     ..+++   ++|++.++.+.+. .-.|+.. .+    ...+.++...|+
T Consensus       176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~  252 (765)
T PRK10049        176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR  252 (765)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence            654   2331      11222222221     12234   6788888888753 2233321 11    111445567799


Q ss_pred             hHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHHHHH
Q 010292          312 LPRMEKIYELVKHHVDG-KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEEMEK  388 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~  388 (513)
                      +++|+..|+.+.+.+.. |+. ....+...|...|++++|...++.+....+....  ......+..++...|++++|.+
T Consensus       253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~  331 (765)
T PRK10049        253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT  331 (765)
T ss_pred             HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            99999999999887532 332 1222567899999999988887766544332211  1112246667889999999999


Q ss_pred             HHHHHHhcCC-----------CCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010292          389 SINDAFEHKT-----------SVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       389 ~~~~~~~~~~-----------~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  455 (513)
                      +++++.....           .|.+  ...+..+...+...|+.++|+++++++..... -+...+..+...+...|+++
T Consensus       332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~  410 (765)
T PRK10049        332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPR  410 (765)
T ss_pred             HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHH
Confidence            9999887531           1111  23445677788899999999999999976543 35778888999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +|++.+++..... +-+...+..+...+...|++++|..+++++++.
T Consensus       411 ~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        411 AAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999865 445677778888999999999999999999864

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-15  Score=142.83  Aligned_cols=409  Identities=10%  Similarity=0.066  Sum_probs=299.7

Q ss_pred             hhhHHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccC-chhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCC
Q 010292           79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS-NGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMT  155 (513)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~  155 (513)
                      ++.-+.+.-+.+.+ +..++.+.+++....+-    ...| ....|..+-.++  .++.+.|.+.|....+     +-|+
T Consensus       113 ~q~ae~ysn~aN~~-kerg~~~~al~~y~~ai----el~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~  182 (966)
T KOG4626|consen  113 PQGAEAYSNLANIL-KERGQLQDALALYRAAI----ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPD  182 (966)
T ss_pred             chHHHHHHHHHHHH-HHhchHHHHHHHHHHHH----hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcc
Confidence            33444444444443 55566666676666553    2234 334555555555  4577778887776655     4455


Q ss_pred             HHHHHHH-HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010292          156 KEEYTKG-IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLI  233 (513)
Q Consensus       156 ~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li  233 (513)
                      .....+- -..+-..|++++|...+.+..+..+.-...|+.|...+-..|+...|+.-|++..+   +.|+- ..|-.|.
T Consensus       183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLG  259 (966)
T KOG4626|consen  183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLG  259 (966)
T ss_pred             hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHH
Confidence            5544433 34445579999999999888876554678899999999999999999999999985   46764 6888999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCh
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~  312 (513)
                      ..|...+.++.|...+.+...... -...+|..|...|-..|++|-|+..|++..+  ++|+ ...|+.|..++-..|++
T Consensus       260 nV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V  336 (966)
T KOG4626|consen  260 NVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSV  336 (966)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccch
Confidence            999999999999999988876432 2457788888889999999999999999988  5677 78999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010292          313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  392 (513)
                      .+|...+...... .+......+.|...|...|.++.|...+...-+....-..+. + -|...|-+.|++++|+..|++
T Consensus       337 ~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~-n-NLa~i~kqqgnl~~Ai~~Yke  413 (966)
T KOG4626|consen  337 TEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH-N-NLASIYKQQGNLDDAIMCYKE  413 (966)
T ss_pred             HHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh-h-hHHHHHHhcccHHHHHHHHHH
Confidence            9999999998886 334566778899999999999988777665554443333333 3 388889999999999999999


Q ss_pred             HHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010292          393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS  472 (513)
Q Consensus       393 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  472 (513)
                      .++  ..|+....|+.+...|-..|+++.|.+.+.+....+.. -.+.++.|...|-..|++.+|+.-|++....  +||
T Consensus       414 alr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD  488 (966)
T KOG4626|consen  414 ALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD  488 (966)
T ss_pred             HHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence            888  67777888999999999999999999999988865532 3567888999999999999999999998864  444


Q ss_pred             -HHHHHHHHHHHHh---cCCH----hHHHHHHHHHHHCCCCCCCCCC
Q 010292          473 -KKTFWIMYYAYAT---CGQR----RKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       473 -~~~~~~li~~~~~---~g~~----~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                       ...|-.++.+.--   -.++    ++..++.++-.+...-|++..+
T Consensus       489 fpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~  535 (966)
T KOG4626|consen  489 FPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPH  535 (966)
T ss_pred             CchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcc
Confidence             2334444443322   1222    3333444444444455665543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=7.5e-16  Score=143.82  Aligned_cols=337  Identities=15%  Similarity=0.071  Sum_probs=243.0

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-------
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-------  227 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-------  227 (513)
                      -..+|..+.+++-..|++++|+.+++.+.+..+..+..|-.+..++...|+.+.|...|.+..+   +.|+..       
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lg  191 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLG  191 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchh
Confidence            4567777777777777777777777777776666677777777777777777777777766654   234433       


Q ss_pred             ----------------------------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHH
Q 010292          228 ----------------------------TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       228 ----------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  278 (513)
                                                  .|+.|.-.+-..|+...|+.-|++..+.  .|+ ...|-.|...|-..+.++
T Consensus       192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d  269 (966)
T KOG4626|consen  192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD  269 (966)
T ss_pred             HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence                                        2333444444556666666666666553  333 345666666666777777


Q ss_pred             HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          279 KVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      +|...|.+...  ..|+ .+.|..+...|...|.+|.|+..+++..+.. +.-...|+.|..++-..|++.++...+...
T Consensus       270 ~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  270 RAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             HHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence            77777666655  3444 5666666667777788888888888777742 223557888888998889888888888777


Q ss_pred             HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 010292          358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC  437 (513)
Q Consensus       358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  437 (513)
                      -.......... ++ |...|...|.+++|..+|...++  ..|.....++.|...|-+.|++++|+.-+++...  ++|+
T Consensus       347 L~l~p~hadam-~N-Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~  420 (966)
T KOG4626|consen  347 LRLCPNHADAM-NN-LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT  420 (966)
T ss_pred             HHhCCccHHHH-HH-HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence            77776666655 33 88889999999999999988877  4455566788888889999999999999998875  4454


Q ss_pred             -HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010292          438 -RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV  508 (513)
Q Consensus       438 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  508 (513)
                       ...|+.+...|-..|+.+.|++.+.+.+..+ +-=...++.|...|-..|+..+|+.-+++..+  ++||.
T Consensus       421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf  489 (966)
T KOG4626|consen  421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF  489 (966)
T ss_pred             HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence             5678888888999999999999998888754 33356778899999999999999999998765  45553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.76  E-value=5.6e-14  Score=143.78  Aligned_cols=337  Identities=6%  Similarity=-0.093  Sum_probs=251.9

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+......+.+.|++++|++.|++..+..+ +...|..+..+|.+.|++++|++.++...+.  -+.+...|..+..++.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            345667778899999999999999887543 6778999999999999999999999999864  2335678899999999


Q ss_pred             hcCChhHHHHHHHHHHHCCC----------------------------CCC-HHHHHHHHH-------------------
Q 010292          238 RLLLVDHMEAAFQEIKDSNL----------------------------SPN-VFTYNYLIA-------------------  269 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~----------------------------~p~-~~~~~~li~-------------------  269 (513)
                      ..|++++|+.-|......+-                            .|. ...+..+..                   
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            99999999876654432110                            000 000000000                   


Q ss_pred             -------HH----------HHccCHHHHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc
Q 010292          270 -------GY----------MTAWMWGKVEEIYQMMKAGP-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE  330 (513)
Q Consensus       270 -------~~----------~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  330 (513)
                             ++          ...+++++|.+.|++....+ ..| +...|..+...+...|++++|...++...+.. +..
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~  364 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV  364 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence                   00          11257889999999988754 234 35678888888899999999999999988753 334


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010292          331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV  410 (513)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  410 (513)
                      ...|..+...+...|++++|...++...+..+.+...+  ..+...+...|++++|...|++.++.  .|.+...+..+.
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la  440 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY--YHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG  440 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence            66788888899999999999888877766655554444  25788899999999999999999884  455666788888


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH
Q 010292          411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK------KTFWIMYYAYA  484 (513)
Q Consensus       411 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~  484 (513)
                      ..+.+.|++++|+..+++..+.. +-+...|+.+...+...|++++|++.|++.....-..+.      ..++..+..+.
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~  519 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ  519 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence            99999999999999999987653 235778888999999999999999999998875311111      11222223344


Q ss_pred             hcCCHhHHHHHHHHHHHCC
Q 010292          485 TCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       485 ~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..|++++|.+++++..+..
T Consensus       520 ~~~~~~eA~~~~~kAl~l~  538 (615)
T TIGR00990       520 WKQDFIEAENLCEKALIID  538 (615)
T ss_pred             HhhhHHHHHHHHHHHHhcC
Confidence            5799999999999987653

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=5.5e-14  Score=125.94  Aligned_cols=375  Identities=12%  Similarity=0.152  Sum_probs=275.0

Q ss_pred             HHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--hcccCCHH-HHHHHHHHHHhcc-----------
Q 010292          122 AFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF--AGRINNVD-LAADLFAEAANKH-----------  186 (513)
Q Consensus       122 ~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~g~~~-~a~~~~~~m~~~~-----------  186 (513)
                      +=+.+++..+ +....+.-+|+.|+..+   ++-+...--.|++.  |....++. .-.+.|-.|...|           
T Consensus       118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~---~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  118 TENNLLKMISSREVKDSCILYERMRSEN---VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             chhHHHHHHhhcccchhHHHHHHHHhcC---CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            4456666664 46667888999988754   55566666555444  33333333 3345566665443           


Q ss_pred             --------CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010292          187 --------LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL  257 (513)
Q Consensus       187 --------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  257 (513)
                              .| +..+|.+||.++|+--..+.|.+++++-... ..+.+..+||.+|.+-.-.-    ..+++.+|....+
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm  269 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM  269 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence                    12 5778999999999999999999999999875 67899999999998754332    2789999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh----ccCC
Q 010292          258 SPNVFTYNYLIAGYMTAWMWGK----VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKH----HVDG  328 (513)
Q Consensus       258 ~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~  328 (513)
                      .||..|+|+++.+..+.|+++.    |.+++.+|++-||.|...+|..+|..+++.++..+ +..++.++..    ..+.
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk  349 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK  349 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence            9999999999999999998874    56788999999999999999999999999998755 4444444433    3455


Q ss_pred             C----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292          329 K----EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       329 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                      |    |...|..-+..|.+..+.+.|.++..+++.-......+      .+|.-+....|.....+.-...|+.|+-.-.
T Consensus       350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence            5    33456677778888889999999988887654433322      2355677888889999999999999887644


Q ss_pred             CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC-C--------HHH-----HHHHH---
Q 010292          399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR-R--------VEE-----MESVL---  461 (513)
Q Consensus       399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~--------~~~-----A~~~~---  461 (513)
                      .| ...+..-++++....|.++-.-++|..++..|...+...-.-++..+++.+ .        +..     |..++   
T Consensus       430 ~p-~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~  508 (625)
T KOG4422|consen  430 FP-HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY  508 (625)
T ss_pred             cC-CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            44 455677788899999999999999999999987766666656666666544 1        111     11121   


Q ss_pred             ----HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292          462 ----KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP  507 (513)
Q Consensus       462 ----~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  507 (513)
                          .+|...+.  .....+...-.+.+.|..++|.+++..+.+.|-+..
T Consensus       509 e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip  556 (625)
T KOG4422|consen  509 ESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP  556 (625)
T ss_pred             HhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence                23443343  445677778888999999999999999977665433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.72  E-value=4.5e-13  Score=139.77  Aligned_cols=377  Identities=10%  Similarity=-0.031  Sum_probs=275.3

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL  196 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  196 (513)
                      .|..+.=-..|....++.+.|++++......    .+.+...+..+..++.+.|++++|.++|++..+..+.+...+..+
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   89 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL   89 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3444444455566678999999998877652    245677799999999999999999999999998877688888899


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|+.++|+..+++..+.  .+.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+.+.|.
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~  165 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL  165 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence            99999999999999999999875  244556 888899999999999999999999987543 56666778888888999


Q ss_pred             HHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHhc-cCCCcHH-HH----HH
Q 010292          277 WGKVEEIYQMMKAGPVMPDT------NTYLLLLRGYAH-----SGNL---PRMEKIYELVKHH-VDGKEFP-LI----RA  336 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~------~t~~~ll~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~  336 (513)
                      .++|++.++....   .|+.      .....++.....     .+++   ++|++.++.+.+. ...|+.. .+    ..
T Consensus       166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d  242 (765)
T PRK10049        166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID  242 (765)
T ss_pred             hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence            9999999987664   2331      112222332221     2234   6788888888754 2222221 11    11


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHH
Q 010292          337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV--TTVRIMRCIVSSYF  414 (513)
Q Consensus       337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~  414 (513)
                      .+..+...|++++|...++.+.+.... ...+....+...|...|++++|+..|+++.......  ........+..++.
T Consensus       243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~-~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~  321 (765)
T PRK10049        243 RLGALLARDRYKDVISEYQRLKAEGQI-IPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL  321 (765)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence            133455668888777776665544321 111111236778999999999999999987643222  11234556777889


Q ss_pred             hcCcHHHHHHHHHHHHhcCC-----------ccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          415 RCNAVDKLANFVKRAESAGW-----------RLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY  480 (513)
Q Consensus       415 ~~~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  480 (513)
                      ..|++++|.++++.+.+...           .|+   ...+..+...+...|+.++|+++++++.... +-+...+..+.
T Consensus       322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA  400 (765)
T PRK10049        322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA  400 (765)
T ss_pred             hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            99999999999999876431           123   2244567778889999999999999998775 66788899999


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010292          481 YAYATCGQRRKVNQVLGLMCKNGYDVPV  508 (513)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~  508 (513)
                      ..+...|++++|++.+++..+..  |+.
T Consensus       401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~  426 (765)
T PRK10049        401 SVLQARGWPRAAENELKKAEVLE--PRN  426 (765)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhC--CCC
Confidence            99999999999999999888753  554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.71  E-value=5e-12  Score=129.76  Aligned_cols=393  Identities=11%  Similarity=0.004  Sum_probs=245.4

Q ss_pred             cCCChhHHHHHHhhhCCccccccCchh-HHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC
Q 010292           95 NVDDLDKVFRVLDEKGSCLFRRHSNGY-AFVELMK--QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN  171 (513)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~  171 (513)
                      +.++...++..+.+...    ..|+.. ....++.  ...+..+.|+..++.....    .+........+...|...|+
T Consensus        46 r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         46 RAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS----MNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             hCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC
Confidence            44555566666666532    234421 1113322  2346777888887765411    22234444444668888899


Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292          172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE  251 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  251 (513)
                      +++|+++|+++.+..+.+...+..++..+...++.++|++.++++.+.   .|+...+-.++..+...++..+|++.+++
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            999999999999887777888888888899999999999999998864   57766665555555456666669999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH----------------------------------------------
Q 010292          252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ----------------------------------------------  285 (513)
Q Consensus       252 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~----------------------------------------------  285 (513)
                      +.+... -+...+..++.++.+.|-...|.++.+                                              
T Consensus       195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~  273 (822)
T PRK14574        195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD  273 (822)
T ss_pred             HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence            988653 245555666666666655544444332                                              


Q ss_pred             --HHHc-CCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          286 --MMKA-GPVMPDT-----NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       286 --~m~~-~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                        .+.. .+-.|..     ....--+-++...|++.++++.++.+...+.+....+-.++.++|...+.+++|..+++.+
T Consensus       274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~  353 (822)
T PRK14574        274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL  353 (822)
T ss_pred             HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence              2221 1111221     1112234556677777778888887777665444455667777888877777776665544


Q ss_pred             HhCCCCC-ccc-c--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------C-CchHHHHHHHHHHHHhcCcHH
Q 010292          358 RLIPEKE-YRP-W--LNVLLIRVYAKEDCLEEMEKSINDAFEHKT------------S-VTTVRIMRCIVSSYFRCNAVD  420 (513)
Q Consensus       358 ~~~~~~~-~~~-~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------~-~~~~~~~~~li~~~~~~~~~~  420 (513)
                      ..-.... ..+ .  ....|.-+|...+++++|..+++++.+...            . +.-...+..++..+...|+..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~  433 (822)
T PRK14574        354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP  433 (822)
T ss_pred             hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence            3222110 000 0  012467777777888888888877776211            0 111122334556667778888


Q ss_pred             HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|++.++++.... +-|......+.+.+...|.+.+|.+.++.....+ +-+..+....+.++...|++++|..+.+...
T Consensus       434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~  511 (822)
T PRK14574        434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVI  511 (822)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            8888888776544 2366677777777777888888888886665543 4455666677777777788888777776554


Q ss_pred             H
Q 010292          501 K  501 (513)
Q Consensus       501 ~  501 (513)
                      +
T Consensus       512 ~  512 (822)
T PRK14574        512 S  512 (822)
T ss_pred             h
Confidence            3

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.68  E-value=5.5e-12  Score=129.41  Aligned_cols=370  Identities=9%  Similarity=-0.032  Sum_probs=255.9

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010292          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK--EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (513)
                      .|+..-...++..-.++.+.|++.|+...+.     .|+.  .++ .++..+...|+.++|+..+++.............
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            4454444455555578899999999888663     3343  234 8888889999999999999998832222344444


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .+...|...|++++|+++|+++.+.  .+-|...+..++..+...++.++|++.++++...  .|+...+-.++..+...
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~  182 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT  182 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence            4467899999999999999999975  2445677778889999999999999999999875  46666664444444445


Q ss_pred             cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------
Q 010292          275 WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYE---------------------------------  320 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~---------------------------------  320 (513)
                      ++..+|++.++++.+..  | +...+..+..++.+.|-...|.++.+                                 
T Consensus       183 ~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~  260 (822)
T PRK14574        183 DRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE  260 (822)
T ss_pred             chHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence            66667999999999854  5 46666677777776665544444333                                 


Q ss_pred             ---------------HHHhc-cCCCc-HH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cccchHHHHHHHH
Q 010292          321 ---------------LVKHH-VDGKE-FP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKE--YRPWLNVLLIRVY  377 (513)
Q Consensus       321 ---------------~~~~~-~~~~~-~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~  377 (513)
                                     .+... +..|. ..    ...-.+-++.+.|+..   ++.+.++.+...+  +.++.-..+.++|
T Consensus       261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~---~vi~~y~~l~~~~~~~P~y~~~a~aday  337 (822)
T PRK14574        261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA---DLIKEYEAMEAEGYKMPDYARRWAASAY  337 (822)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH---HHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence                           22211 11121 11    1123333455556544   4444555555433  3344444688999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----------cc--cH-h
Q 010292          378 AKEDCLEEMEKSINDAFEHKT----SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-----------RL--CR-S  439 (513)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~--~~-~  439 (513)
                      ...++.++|+.+|+++.....    .+++......|..+|...+++++|..+++.+.+...           .|  |- .
T Consensus       338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~  417 (822)
T PRK14574        338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE  417 (822)
T ss_pred             HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence            999999999999998876432    122343356788899999999999999999876321           12  21 1


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+..++..+...|+..+|++.++++.... +-|......+...+...|++.+|.+.++.....
T Consensus       418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL  479 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            23445677888999999999999998765 668888889999999999999999999766544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.65  E-value=2.4e-12  Score=123.90  Aligned_cols=284  Identities=8%  Similarity=0.036  Sum_probs=161.6

Q ss_pred             cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 010292          169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN--TLISVFGRLLLVDHME  246 (513)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~  246 (513)
                      .|++++|.+.+....+........|-....+..+.|+++.|.+.|.++.+.   .|+...+.  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            577777777766655432112222333334446777777777777777653   45543332  2345667777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 010292          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGNLPRMEKIY  319 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~  319 (513)
                      ..++++.+... -+...+..+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            77777776653 25666777777777777777777777777766544221       12222222222222223333333


Q ss_pred             HHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010292          320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS  399 (513)
Q Consensus       320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  399 (513)
                      +.+.+. .+.+.....                                    .+...+...|+.++|.+++++..+... 
T Consensus       253 ~~lp~~-~~~~~~~~~------------------------------------~~A~~l~~~g~~~~A~~~L~~~l~~~~-  294 (398)
T PRK10747        253 KNQSRK-TRHQVALQV------------------------------------AMAEHLIECDDHDTAQQIILDGLKRQY-  294 (398)
T ss_pred             HhCCHH-HhCCHHHHH------------------------------------HHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence            332211 112222222                                    455666666666666666666655322 


Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                        +...  .++.+....++.+++.+..+...+... -|...+..+...+.+.|++++|.+.|+...+.  .|+..+|..+
T Consensus       295 --~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L  367 (398)
T PRK10747        295 --DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL  367 (398)
T ss_pred             --CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence              2211  233344455677777777776664432 24555666667777777777777777777654  4677777777


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHH
Q 010292          480 YYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       480 i~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ...+.+.|+.++|.+++++-..
T Consensus       368 a~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        368 ADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            7777777777777777776543

>TIGR00540 hemY_coli hemY protein

Probab=99.64  E-value=7.9e-12  Score=120.99  Aligned_cols=131  Identities=8%  Similarity=0.020  Sum_probs=90.4

Q ss_pred             HHHHHHHh--cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHH
Q 010292          159 YTKGIKFA--GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLIS  234 (513)
Q Consensus       159 ~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~  234 (513)
                      +..+..+.  ...|+++.|.+.+....+....+...+-....++.+.|+.+.|.+.+.+..+.   .|+..  ..-....
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~  161 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHH
Confidence            34444443  45688888888887776654324444555566677778888888888887654   34442  3333466


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                      .+...|+++.|...++++.+.++. +..++..+...+.+.|++++|.+++..+.+.++.
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            777788888888888888876532 5667778888888888888888888888877644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.60  E-value=1.1e-14  Score=133.96  Aligned_cols=260  Identities=11%  Similarity=0.065  Sum_probs=97.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292          233 ISVFGRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  311 (513)
                      ...+.+.|++++|.+++++.......| |..-|..+...+...+++++|.+.++++...+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            444455555555555554332222112 2223333333344455555555555555543322 33344444444 45555


Q ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292          312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      +++|.++++...+..  ++...+..++..+...++++++..+++.+.........+..+..+...+.+.|+.++|++.++
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555555443332  233334455555555555555555555444333222222223346677778888888999998


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010292          392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC  471 (513)
Q Consensus       392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  471 (513)
                      +.++.  .|.+..+.+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++....+ +.
T Consensus       171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~  246 (280)
T PF13429_consen  171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD  246 (280)
T ss_dssp             HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred             HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence            88884  45566678889999999999999888888877654 4456677888889999999999999999988765 55


Q ss_pred             CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          472 SKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      |......+..++...|+.++|.++.++..
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -HHHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            88888899999999999999998887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=1.9e-11  Score=106.08  Aligned_cols=229  Identities=13%  Similarity=0.099  Sum_probs=135.0

Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHhc
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF----PLIRAMICAYSKC  344 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~  344 (513)
                      .-|...|-+|.|+++|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+..+..    ..|..|...+...
T Consensus       115 ~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~  193 (389)
T COG2956         115 RDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS  193 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence            3344455555555555555443311 2233444555555555555555555544444333221    1333444444444


Q ss_pred             CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292          345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN  424 (513)
Q Consensus       345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  424 (513)
                      .+++.|...++..-...++.+...+  ++.......|+++.|.+.++.+.+.+... -..+...|..+|.+.|+.++...
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASI--ILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhh--hhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHhCCHHHHHH
Confidence            4455444444433333444444433  57777888889999999888888765443 24567888899999999999999


Q ss_pred             HHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHH
Q 010292          425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT---CGQRRKVNQVLGLMCK  501 (513)
Q Consensus       425 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~  501 (513)
                      ++.++.+....++.  -..+-+.-....-.+.|..++.+-..+  +|+...+..++..-..   .|.+.+.+.++++|..
T Consensus       271 fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         271 FLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            99988766544443  334444444455566777766655544  6898888888877643   4456777777888865


Q ss_pred             CCCC
Q 010292          502 NGYD  505 (513)
Q Consensus       502 ~g~~  505 (513)
                      .-++
T Consensus       347 e~l~  350 (389)
T COG2956         347 EQLR  350 (389)
T ss_pred             HHHh
Confidence            5443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=1.7e-11  Score=118.07  Aligned_cols=262  Identities=9%  Similarity=0.025  Sum_probs=184.7

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHccCHHH
Q 010292          203 NGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN--YLIAGYMTAWMWGK  279 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~  279 (513)
                      .|++++|.+.+....+.   .++.. .|.....+..+.|+++.|...|+++.+.  .|+...+.  .....+...|++++
T Consensus        97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence            69999999888876542   22233 3433445558899999999999999874  35543333  33567888999999


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH-HHHHhcCChhHHHHHHHHHH
Q 010292          280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMR  358 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~  358 (513)
                      |.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. ...+- .+|.                
T Consensus       172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~----------------  233 (398)
T PRK10747        172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWI----------------  233 (398)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHH----------------
Confidence            999999998865 2257788899999999999999999999999876543222 11110 1111                


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010292          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR  438 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  438 (513)
                                   .++.......+.+...++++..-+.  .+.+......+...+...|+.++|.+++++..+..  ++.
T Consensus       234 -------------~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~  296 (398)
T PRK10747        234 -------------GLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE  296 (398)
T ss_pred             -------------HHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH
Confidence                         1111112223344444555444331  23456677889999999999999999999988744  344


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCC
Q 010292          439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN  509 (513)
Q Consensus       439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  509 (513)
                      ..  .++.+....++.+++.+..+...++. +-|...+..+.+.|.+.|++++|.+.|+...+.  .|+..
T Consensus       297 ~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~  362 (398)
T PRK10747        297 RL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAY  362 (398)
T ss_pred             HH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence            22  23444556799999999999999775 557777889999999999999999999999876  35543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.58  E-value=4.7e-10  Score=117.88  Aligned_cols=323  Identities=10%  Similarity=-0.030  Sum_probs=232.2

Q ss_pred             cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC---hhH
Q 010292          169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK-EANISPSIVTYNTLISVFGRLLL---VDH  244 (513)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~g~~p~~~~~~~li~~~~~~g~---~~~  244 (513)
                      .+...++.+.++.|.+....+......+--...+.|+.++|..+|+.... ...-.++....+-++..|.+.+.   ..+
T Consensus       355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence            35566666666666665444555566666667788999999999998875 21123344455577777777765   222


Q ss_pred             HHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292          245 MEAA----------------------FQEIKDS-NL-SP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       245 A~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                      +..+                      .+..... +. .+  +...|..+..++.. |+.++|...|.+....  .|+...
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~  511 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ  511 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence            2222                      1111111 11 23  56777878877776 8899999988887763  477655


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010292          299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA  378 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  378 (513)
                      ...+...+...|++++|...|+.+...  +|+...+..+..++.+.|+.+.|...++...+........  ...+...+.
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~  587 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRY  587 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHH
Confidence            555566667899999999999987664  3444455667788899999998888877666654222111  112333344


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010292          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME  458 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~  458 (513)
                      ..|++++|...+++.++..  |. ...+..+...+.+.|+.++|...+++..+.... +...++.+...+...|++++|+
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~--P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIA--PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence            5599999999999998854  33 567888999999999999999999999876533 5677788888999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..+++..+.. +-+...+..+..++...|++++|...+++..+..
T Consensus       664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999998865 5577889999999999999999999999987653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.58  E-value=7.3e-11  Score=123.80  Aligned_cols=349  Identities=10%  Similarity=-0.009  Sum_probs=246.3

Q ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-cC--CCHhHHHHHHHHHHHcCC---hHHH
Q 010292          136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HL--KTIGTYNALLGAYMYNGL---SDKC  209 (513)
Q Consensus       136 ~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~--~~~~~~~~li~~~~~~g~---~~~A  209 (513)
                      ++.+....+.+.    .+-+......+--...+.|+.++|.++|+..... +-  .+....+-++..|.+.+.   ..++
T Consensus       360 ~~~~~~~~~y~~----~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  435 (987)
T PRK09782        360 EALRLARLLYQQ----EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV  435 (987)
T ss_pred             HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence            344444445443    1236667777777778889999999999987763 21  145566677777777765   3333


Q ss_pred             HHH----------------------HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 010292          210 QSL----------------------FRDLKKEANI-SP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY  264 (513)
Q Consensus       210 ~~~----------------------~~~m~~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  264 (513)
                      ..+                      ++......+. ++  +...|..+..++.. ++.++|...+.+.....  |+....
T Consensus       436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~  512 (987)
T PRK09782        436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQH  512 (987)
T ss_pred             HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHH
Confidence            222                      2222222122 33  56777878877776 78888999887777653  665443


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292          265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (513)
                      ..+...+...|++++|...|+++...  .|+...+..+..++.+.|++++|...++...+.. +.+...+..+...+...
T Consensus       513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~  589 (987)
T PRK09782        513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP  589 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence            33444556899999999999998664  4555566777788899999999999999988764 23334444444445566


Q ss_pred             CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292          345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN  424 (513)
Q Consensus       345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  424 (513)
                      |++++|...++...+..+. ...  +..+...+.+.|++++|+..+++.+..  .|.+...++.+...+...|+.++|++
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~  664 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE  664 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999888887777666553 323  335788899999999999999998884  46667788888899999999999999


Q ss_pred             HHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       425 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .+++..+... -+...+..+..++...|++++|+..|++..+.. +-+..+.........+..+++.|.+-+++-..
T Consensus       665 ~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        665 MLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999887653 256778889999999999999999999998765 33335555666777777778888777765543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.58  E-value=3.7e-14  Score=130.42  Aligned_cols=260  Identities=11%  Similarity=0.053  Sum_probs=105.5

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhcc-CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKH-LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      .+...+.+.|++++|+++++...... .+ +...|..+...+...++.+.|++.++++... + +-+...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence            55777889999999999997654444 34 7777888888888899999999999999864 2 2355667777777 78


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010292          239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      .+++++|..++++..+..  ++...+..++..+.+.|+++++.+++++.... ....+...|..+...+.+.|+.++|++
T Consensus        90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999998876543  56677888889999999999999999997753 245678888899999999999999999


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      ++++..+.. +.|......++..+...|+.+++.++++.+.+..+.+...+.  .+..+|...|+.++|..+|++.... 
T Consensus       168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~--~la~~~~~lg~~~~Al~~~~~~~~~-  243 (280)
T PF13429_consen  168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD--ALAAAYLQLGRYEEALEYLEKALKL-  243 (280)
T ss_dssp             HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH--HHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH--HHHHHhccccccccccccccccccc-
Confidence            999998863 346777888999999999888887887777666544444442  5788888888999999998887773 


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  430 (513)
                       .|.+..+...+..++...|+.++|.++.++..
T Consensus       244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -STT-HHHHHHHHHHHT----------------
T ss_pred             -cccccccccccccccccccccccccccccccc
Confidence             35566677788888888888888888877653

>TIGR00540 hemY_coli hemY protein

Probab=99.57  E-value=3e-11  Score=116.99  Aligned_cols=296  Identities=9%  Similarity=0.030  Sum_probs=207.1

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292          201 MYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                      ...|+++.|.+.+.+..+.   .|+. ..|-....+..+.|+.+.|.+.+++..+....++....-.....+...|++++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence            4579999999999888753   4654 34455567788899999999999998765433333344445778888999999


Q ss_pred             HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHH---HhcCChhH-HHHHH
Q 010292          280 VEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY---SKCSVTDR-IKKIE  354 (513)
Q Consensus       280 a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~-a~~~~  354 (513)
                      |.+.++.+.+.+  | +......+...+...|++++|.+++..+.+.+..+.......-..++   ...+..+. .....
T Consensus       172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999999865  4 57788899999999999999999999999986544332211111221   21111111 11222


Q ss_pred             HHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292          355 ALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       355 ~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  433 (513)
                      ......+.. ...+.....+...+...|+.++|.+++++..+.....................++.+.+.+.++...+..
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            333333321 0112223368889999999999999999999854433321111112223344578888888888876543


Q ss_pred             CcccH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          434 WRLCR--SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       434 ~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      . -|.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-...
T Consensus       330 p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       330 D-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             C-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2 133  5566888899999999999999996544445799999999999999999999999999986443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=8.5e-12  Score=112.89  Aligned_cols=187  Identities=9%  Similarity=0.022  Sum_probs=142.4

Q ss_pred             hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292          308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      ..|+++.|.+.+++.....-......||.= -.+-+.|++++|.+.+-.+..+...+.....  .+...|-...+...|+
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~--qianiye~led~aqai  578 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLV--QIANIYELLEDPAQAI  578 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHhhCHHHHH
Confidence            357899999999988876444444444432 2456778888887777666655544443332  4677788888999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      +++.+...  ..|+++.++..|...|-+.|+-..|.+.+-+--. -++.+..+...|...|....-+++|+.+|++..- 
T Consensus       579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal-  654 (840)
T KOG2003|consen  579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-  654 (840)
T ss_pred             HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence            99865544  7788899999999999999999999887665433 2456788889999999999999999999998753 


Q ss_pred             CCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHC
Q 010292          468 KIDCSKKTFWIMYYA-YATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       468 ~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~  502 (513)
                       ++|+..-|..++.. +.+.|++++|.+++++..+.
T Consensus       655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence             68999999987755 46789999999999988754

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.52  E-value=9.6e-13  Score=128.17  Aligned_cols=264  Identities=16%  Similarity=0.129  Sum_probs=167.4

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      ++-.+... |+.||.+||..+|.-||..|+.+.|- +|.-|.-.....+...|+.++.+..++++.+.+.          
T Consensus        12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            45556654 88888888888888888888888888 8888887777777888888888888888777665          


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                       .|...||+.|+.+|...||+..    |+...+        -.-.++..+...|.-......+..+  -..++..+... 
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~--~c~p~~lpda~-  143 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKI--HCCPHSLPDAE-  143 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhc--ccCcccchhHH-
Confidence             5788888899999988888765    332222        1122333344444332222221111  23344444422 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      ..+.-....|.++.+++++..+-......|    +..+++-+....  .-..+++...+...-.|+..+|..+++.-.-.
T Consensus       144 n~illlv~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaa  217 (1088)
T KOG4318|consen  144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAA  217 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccccch----HHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence            245555566667776666544322111111    111233333222  22233333333222257778888888888888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010292          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP  512 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  512 (513)
                      |+++.|..++.+|.++|++.+.+-|+.|+.+   .++...+..+++-|.+.|+.|+.+|+.
T Consensus       218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a  275 (1088)
T KOG4318|consen  218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA  275 (1088)
T ss_pred             CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence            8888888888888888888888877777776   677777888888888888888887763

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.52  E-value=3.1e-10  Score=111.55  Aligned_cols=330  Identities=12%  Similarity=0.017  Sum_probs=231.8

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      ...|++++|.+++.++.+..+.+...|.+|...|-..|+.+++...+-..-.  -.+-|..-|..+-....+.|++++|.
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHH
Confidence            3449999999999999988777888999999999999999998887766553  23556678888888888999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010292          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT----NTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      -.|.+.++... ++...+---+..|-+.|+...|.+-|.+|.+..-..|.    .....+++.+...++-+.|.+.++..
T Consensus       228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999888754 35555555667788889999999999888874321122    23334456667777778888888776


Q ss_pred             Hh-ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC-----------------------CcccchHH-HHHHH
Q 010292          323 KH-HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEK-----------------------EYRPWLNV-LLIRV  376 (513)
Q Consensus       323 ~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~-----------------------~~~~~~~~-~li~~  376 (513)
                      .. .+-..+...++.++..|.+...++.+...+...... .++                       +....+-. -+.-+
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic  386 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC  386 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence            55 223335556777788888877777665554333220 001                       11111111 12223


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010292          377 YAKEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  455 (513)
                      +......+...-+......... ...+...|.-+..+|...|++.+|+.++..+......-+...|--+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            3333333333333333333322 234567788999999999999999999999987655556778888999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|.+.|+...... +-+...--.|-..+.+.|+.++|.+.++.|.
T Consensus       467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999998764 3344455577788999999999999999876

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.52  E-value=1.1e-09  Score=98.27  Aligned_cols=299  Identities=10%  Similarity=0.028  Sum_probs=187.0

Q ss_pred             HHHHHhc--ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292          161 KGIKFAG--RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       161 ~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      .+.+++.  -.|++.+|+++..+-.+.+......|-.-..+--..|+.+.+-.++.+..+.. -.++...+-+.......
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~  165 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHh
Confidence            3444443  36888888888888766655556666666777777888888888888887642 24555666777777888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCC
Q 010292          239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGN  311 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~  311 (513)
                      .|+.+.|..-++++.+.+. .+..+......+|.+.|++.++..+...|.+.|+--|.       .+|..+++-....+.
T Consensus       166 ~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         166 RRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             CCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888888888888887665 36777888888888888888888888888887765443       233333333333333


Q ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292          312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      .+.-...|+...+. ...+...                                    ...++.-+.+.|+.++|.++.+
T Consensus       245 ~~gL~~~W~~~pr~-lr~~p~l------------------------------------~~~~a~~li~l~~~~~A~~~i~  287 (400)
T COG3071         245 SEGLKTWWKNQPRK-LRNDPEL------------------------------------VVAYAERLIRLGDHDEAQEIIE  287 (400)
T ss_pred             chHHHHHHHhccHH-hhcChhH------------------------------------HHHHHHHHHHcCChHHHHHHHH
Confidence            33322222222211 1111111                                    2235555666667777777766


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010292          392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID  470 (513)
Q Consensus       392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  470 (513)
                      +..++.-.+.    . ...-.+.+.++.+.-++..+.-. ..+..|  ..+.+|...|.+.+.|.+|...|+.....  .
T Consensus       288 ~~Lk~~~D~~----L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~  358 (400)
T COG3071         288 DALKRQWDPR----L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--R  358 (400)
T ss_pred             HHHHhccChh----H-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--C
Confidence            6666544433    1 12234556666666555555443 333333  55667777777777777777777755543  5


Q ss_pred             CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292          471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP  507 (513)
Q Consensus       471 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  507 (513)
                      |+..+|+.+.++|.+.|+..+|.+++++-...-..|+
T Consensus       359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         359 PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            7777777777777777777777777776654433333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=3.4e-10  Score=103.15  Aligned_cols=335  Identities=13%  Similarity=0.038  Sum_probs=221.3

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH-----------------------------HHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-----------------------------AYMY  202 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~-----------------------------~~~~  202 (513)
                      ...|...+-...-.+-+.|..+.|.+.|......-+..-..|..|..                             ++-.
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e  239 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE  239 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence            33354444444455567788888888877765532222222222221                             2222


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHccCHH-H
Q 010292          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYLIAGYMTAWMWG-K  279 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~-~  279 (513)
                      ..+.++++.-.+..... |+.-+...-+-...+.-...|+++|+.+|+++.+..+-  -|..+|..++-.--...... -
T Consensus       240 l~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L  318 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL  318 (559)
T ss_pred             HHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence            23444454444444443 44333332233333334455666666666666654211  14455555543221111111 1


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292          280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      |..+++   -...  -..|+.++.+-|.-.++.+.|...|++..+.+ +.....|+.+-.-|....+...|.+.++...+
T Consensus       319 A~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd  392 (559)
T KOG1155|consen  319 AQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD  392 (559)
T ss_pred             HHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence            111111   1112  23466667777777888999999999999874 34667889899999999999999999999999


Q ss_pred             CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010292          360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS  439 (513)
Q Consensus       360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  439 (513)
                      +.+.+...| | -+..+|.-.+...=|+-.|++...  ..|.|..+|.+|..+|.+.++.++|++-|++....|-. +..
T Consensus       393 i~p~DyRAW-Y-GLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~  467 (559)
T KOG1155|consen  393 INPRDYRAW-Y-GLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS  467 (559)
T ss_pred             cCchhHHHH-h-hhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence            999999999 5 499999999999999999999887  66888999999999999999999999999999877743 667


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292          440 LYHSKMVMYASQRRVEEMESVLKEMEN----YKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      .|..|.+.|-+.++.++|...|++..+    .|..-+  .....-|..-+.+.+++++|..+...
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            899999999999999999999887665    243222  22222355667788888887764443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.5e-11  Score=116.92  Aligned_cols=287  Identities=13%  Similarity=0.046  Sum_probs=216.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHccCHHHHH
Q 010292          205 LSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPNVFTYNYLIAGYMTAWMWGKVE  281 (513)
Q Consensus       205 ~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~  281 (513)
                      +..+|+..|..+...   .+|+ ....-+..+|...+++++|+++|+.+.+...  .-+...|.+.+..+-+.    -++
T Consensus       334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L  406 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL  406 (638)
T ss_pred             HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence            467888999886543   4444 4556677889999999999999999886431  22677888887655332    222


Q ss_pred             HHH-HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010292          282 EIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI  360 (513)
Q Consensus       282 ~~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  360 (513)
                      ..+ +++.... +-...+|.++.++|.-.++.+.|++.|++.++.+ +....+|+.+-.-+.....+|.|...++....+
T Consensus       407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            222 2222211 2357899999999999999999999999988853 226677887777788888888888888888888


Q ss_pred             CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010292          361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL  440 (513)
Q Consensus       361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  440 (513)
                      ..+++..| | -+...|.+.++++.|+-.|++.++  ..|.+..+...+...+.+.|+.|+|+++++++.....+ |+..
T Consensus       485 ~~rhYnAw-Y-GlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~  559 (638)
T KOG1126|consen  485 DPRHYNAW-Y-GLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC  559 (638)
T ss_pred             CchhhHHH-H-hhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence            88888889 5 488999999999999999999887  45666667777888889999999999999998766544 2322


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010292          441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV  506 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  506 (513)
                      --.-+..+...+++++|+..++++++. ++-+...|..+.+.|-+.|+.+.|+.-|--|.+..-++
T Consensus       560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            223455677789999999999999975 24456778889999999999999988887776654443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=5.4e-11  Score=113.18  Aligned_cols=283  Identities=10%  Similarity=-0.025  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCh-hHHHHHH
Q 010292          172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLV-DHMEAAF  249 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~-~~A~~~~  249 (513)
                      ..+|...|+.++..-..+..+...+..+|...+++++|.++|+.+.+.... .-+...|.+.+--+-+.=.+ -.|..+.
T Consensus       335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li  414 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI  414 (638)
T ss_pred             HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            345555555544332223344444555555555555555555555432111 11334444444332211000 0111111


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 010292          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG  328 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  328 (513)
                      +.++     -...+|.++.++|.-.++.+.|++.|++..+  +.| ..++|+.+-.-+....++|.|...|....... +
T Consensus       415 ~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~  486 (638)
T KOG1126|consen  415 DTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P  486 (638)
T ss_pred             hhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence            1111     2344555555555555555555555555554  233 35555555555555555555555555444321 0


Q ss_pred             CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010292          329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC  408 (513)
Q Consensus       329 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  408 (513)
                      .+-..|.-+.-.|.+.++++.|+--++...++.+.+.+-..  .+...+-+.|+.|+|++++++...-....+-. .| -
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~--~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~-~~-~  562 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC--HIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC-KY-H  562 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh--hhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh-HH-H
Confidence            11222223333455555555554444444444443333221  23444445555555555555555432222111 12 2


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       409 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      .+..+...+++++|+..++++++.-.+ +...|..+...|.+.|+.+.|+.-|--+.+.
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            233444455555555555555543221 2333444555555555555555555555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.47  E-value=2.7e-09  Score=105.11  Aligned_cols=361  Identities=8%  Similarity=0.002  Sum_probs=258.9

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++.+.|.+++..+.++    .+.....|-.|..+|-..|+.+++...+-..--.++.|...|-.+.....+.|++++|.-
T Consensus       153 g~~eeA~~i~~EvIkq----dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQ----DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             CCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            6888899999988886    456888999999999999999999988877766666688999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHH
Q 010292          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY----NYLIAGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m  287 (513)
                      .|.+..+.  -+++...+---+..|-+.|+...|..-|.++.......|..-+    -.++..+...++-+.|.+.++..
T Consensus       229 cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  229 CYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999974  3556666666778899999999999999999986542233222    33455666777778899988887


Q ss_pred             HcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHH
Q 010292          288 KAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---------------------------VDGKEFPLIRAMIC  339 (513)
Q Consensus       288 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~~~~~~~li~  339 (513)
                      ... +-.-+...++.++..+.+...++.|......+...                           +..++..++. ++-
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~i  385 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMI  385 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhh
Confidence            662 22345567788888888888888888877766551                           1223333322 222


Q ss_pred             HHHhcCChhHHHHHHHHHHhCC-CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292          340 AYSKCSVTDRIKKIEALMRLIP-EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       340 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      ++......+........+.+-. ........+.-+..+|...|++.+|+++|..+....... +..+|--+..+|-..|.
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e  464 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYMELGE  464 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHHHhh
Confidence            3333332222222222221111 111222224458899999999999999999888754433 46678889999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHh
Q 010292          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY--------KIDCSKKTFWIMYYAYATCGQRR  490 (513)
Q Consensus       419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~  490 (513)
                      ++.|.+.++........ +...--.|-..+-+.|+.++|.++++.+...        +..|+..........+.+.|+.+
T Consensus       465 ~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E  543 (895)
T KOG2076|consen  465 YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE  543 (895)
T ss_pred             HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence            99999999988764422 3444456677788999999999999986533        35566666667778888999988


Q ss_pred             HHHHHHHHHHH
Q 010292          491 KVNQVLGLMCK  501 (513)
Q Consensus       491 ~A~~~~~~m~~  501 (513)
                      +=+.+-..|..
T Consensus       544 ~fi~t~~~Lv~  554 (895)
T KOG2076|consen  544 EFINTASTLVD  554 (895)
T ss_pred             HHHHHHHHHHH
Confidence            86666555544

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=1.3e-13  Score=89.14  Aligned_cols=49  Identities=37%  Similarity=0.667  Sum_probs=29.1

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010292          259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA  307 (513)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  307 (513)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555566666666666666666666666665566666666666655554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=3.6e-10  Score=98.34  Aligned_cols=302  Identities=16%  Similarity=0.123  Sum_probs=213.7

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--VTYNTLISV  235 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~~~~~li~~  235 (513)
                      .|-.-++.+. .++.++|.++|-+|.+....+..+.-+|.+.|-+.|..|+|+++...+..+.+..-+.  ...-.|..-
T Consensus        38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHh-hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            3433444332 4678899999999988655577778888888999999999999999888652221111  233456677


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCC
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGN  311 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~  311 (513)
                      |...|-++.|+.+|..+.+.|. --......|+..|-...+|++|+++-+++.+.|-++.    ...|..|...+....+
T Consensus       117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence            8888999999999999887543 2456778889999999999999999998887654443    3566777777777888


Q ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292          312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      ++.|..++++..+.+. ..+..--.+-+.+...|+++.|.++++...+- .+.+.+-+-..|..+|...|+.++....+.
T Consensus       196 ~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         196 VDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             HHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999988887643 24444456677788899999888887766552 334444434468899999999999999999


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH---hcCCHHHHHHHHHHHHhCC
Q 010292          392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA---SQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~  468 (513)
                      ++.+....+.-   -..+-..-....-.+.|..++.+-..  -+|+...+..+|+.-.   ..|...+-..+++.|....
T Consensus       274 ~~~~~~~g~~~---~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~  348 (389)
T COG2956         274 RAMETNTGADA---ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ  348 (389)
T ss_pred             HHHHccCCccH---HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence            88886544332   23333333344555666666665543  3588888998988765   3556777777888887653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.46  E-value=1.5e-09  Score=107.73  Aligned_cols=337  Identities=9%  Similarity=-0.025  Sum_probs=185.7

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      |...+.+.|+++.+...|+.+.+..+.+..+...|...|+..+    ..++|..++.+..+.  ..-|...|-.+...+-
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE  425 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence            4455555555555555555555544445555555555555443    334444444444432  1334444544444443


Q ss_pred             hcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCH------HHHHHHHH
Q 010292          238 RLLLVDHMEAAFQEI----KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDT------NTYLLLLR  304 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~t~~~ll~  304 (513)
                      ... ...++.+|...    ...+-.+-....|.+...+...|++++|...|+..+..   ...+|.      .+--.+..
T Consensus       426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar  504 (1018)
T KOG2002|consen  426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR  504 (1018)
T ss_pred             hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence            332 22224443332    23333456667777777777888888888888776553   112222      22233444


Q ss_pred             HHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc------------------
Q 010292          305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR------------------  366 (513)
Q Consensus       305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------------  366 (513)
                      .+-..++.+.|.+.|..+.+.. +.-+..|-.+..+....+....+...++..-.....+..                  
T Consensus       505 l~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  505 LLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence            4455566777777777666541 111122222221111112222222222111111111111                  


Q ss_pred             --------------cchHH--HHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292          367 --------------PWLNV--LLIRVYAK------------EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       367 --------------~~~~~--~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                                    +.+|+  .|.+.|..            .+..++|+++|.++++  ..|.+...-|.+.-.++..|+
T Consensus       584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~  661 (1018)
T KOG2002|consen  584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR  661 (1018)
T ss_pred             ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence                          12222  23333322            1356778888888777  445556556777778888888


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010292          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY-KIDCSKKTFWIMYYAYATCGQRRKVNQVLG  497 (513)
Q Consensus       419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  497 (513)
                      ++.|..+|....+.... +..+|-.+.++|..+|++-.|+++|+....+ .-.-+......|.+++.+.|.+.+|.+.+.
T Consensus       662 ~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll  740 (1018)
T KOG2002|consen  662 FSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL  740 (1018)
T ss_pred             chHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            88888888888766542 3455667888888888999999888875543 445567778888888888888888888877


Q ss_pred             HHHHCCCC
Q 010292          498 LMCKNGYD  505 (513)
Q Consensus       498 ~m~~~g~~  505 (513)
                      ..+.....
T Consensus       741 ~a~~~~p~  748 (1018)
T KOG2002|consen  741 KARHLAPS  748 (1018)
T ss_pred             HHHHhCCc
Confidence            76655433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=1.8e-09  Score=97.03  Aligned_cols=268  Identities=9%  Similarity=-0.007  Sum_probs=194.5

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010292          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE  282 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (513)
                      .|++.+|.++..+-.+. +- -....|..-..+-...|+.+.+...+.+.-+.--.++...+-+........|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            69999999999987754 43 33456777778888999999999999999886445677778888888999999999999


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010292          283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE  362 (513)
Q Consensus       283 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  362 (513)
                      -++++.+.+-. +........++|.+.|++.....++..+.+.+.-.+...-.-=.             .+         
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-------------~a---------  231 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-------------QA---------  231 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-------------HH---------
Confidence            99998886533 57788899999999999999999999999988765544211000             01         


Q ss_pred             CCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHH
Q 010292          363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH  442 (513)
Q Consensus       363 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  442 (513)
                             +..++.-....+..+.-...+++.-.+-  ..++.+-.+++.-+.+.|+.++|.+++++..+.+..|+...  
T Consensus       232 -------~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--  300 (400)
T COG3071         232 -------WEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--  300 (400)
T ss_pred             -------HHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--
Confidence                   0012222222233333334444433321  12344566788889999999999999999999998877322  


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010292          443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                        .-.+.+-++.+.=++..++-.... +-++..+.+|..-|.+++.|.+|.+.|+...+.  .|+..+|
T Consensus       301 --~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~  364 (400)
T COG3071         301 --LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDY  364 (400)
T ss_pred             --HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhH
Confidence              235667788888888877766543 345578999999999999999999999966554  5666655

>PF13041 PPR_2: PPR repeat family

Probab=99.45  E-value=2.6e-13  Score=87.80  Aligned_cols=50  Identities=38%  Similarity=0.644  Sum_probs=35.2

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010292          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT  273 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (513)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            66677777777777777777777777777777777777777777776653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.3e-09  Score=108.18  Aligned_cols=339  Identities=10%  Similarity=0.020  Sum_probs=197.9

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN----NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD  207 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~  207 (513)
                      ++.+.+...|+.+.+.    .|-+..+...|...|+..+    ..+.|..++....+..+.|...|-.+...+-...-+.
T Consensus       356 ~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~  431 (1018)
T KOG2002|consen  356 GDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA  431 (1018)
T ss_pred             chHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence            3455566666666554    2334455555555555553    4566666666666655446777776666665544333


Q ss_pred             HHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH-------HHHHHHHHHHHH
Q 010292          208 KCQSLFRDL----KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS---NLSPNV-------FTYNYLIAGYMT  273 (513)
Q Consensus       208 ~A~~~~~~m----~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-------~~~~~li~~~~~  273 (513)
                      . +..|...    ... +-.+-....|.+...+...|+++.|...|+..+..   ...+|.       .-|| +...+-.
T Consensus       432 s-L~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~  508 (1018)
T KOG2002|consen  432 S-LDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEE  508 (1018)
T ss_pred             H-HHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHh
Confidence            2 5555433    222 33466667777777777777777777777766643   112222       1232 2223333


Q ss_pred             ccCHHHHHHHHHHHHcCC---------------------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292          274 AWMWGKVEEIYQMMKAGP---------------------------------VMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       274 ~g~~~~a~~~~~~m~~~g---------------------------------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .++.+.|.++|..+.+..                                 ..-+...++.+-..+.+..++..|.+-|.
T Consensus       509 l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~  588 (1018)
T KOG2002|consen  509 LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFE  588 (1018)
T ss_pred             hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence            445555555555554421                                 01122223333334444444444444333


Q ss_pred             HHHhc-cCCCcHHHHHHHHHHHHhc------------CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292          321 LVKHH-VDGKEFPLIRAMICAYSKC------------SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       321 ~~~~~-~~~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      .+.+. ...+|..+.-+|-+.|...            +..++|.+.+...-+..+++.-.- + -+.-.++..|++.+|.
T Consensus       589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-N-GIgiVLA~kg~~~~A~  666 (1018)
T KOG2002|consen  589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-N-GIGIVLAEKGRFSEAR  666 (1018)
T ss_pred             HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-c-chhhhhhhccCchHHH
Confidence            33321 1124555444555544321            222333333333333333333322 2 3677788899999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      .+|.++.+.....  ..+|-.+.++|...|++..|+++|+... +....-+....+.|..++.+.|++.+|.+.+.....
T Consensus       667 dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  667 DIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            9999999875533  3357789999999999999999999765 445555778889999999999999999999988887


Q ss_pred             CCCCCCHHHHHHHHH
Q 010292          467 YKIDCSKKTFWIMYY  481 (513)
Q Consensus       467 ~~~~p~~~~~~~li~  481 (513)
                      ....-....||..+.
T Consensus       745 ~~p~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  745 LAPSNTSVKFNLALV  759 (1018)
T ss_pred             hCCccchHHhHHHHH
Confidence            665545556665443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.41  E-value=1.1e-08  Score=97.30  Aligned_cols=328  Identities=8%  Similarity=-0.001  Sum_probs=220.2

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..|.+.+.++-|..+|....+-.+.+...|......--..|..+....+|++....  ++-....|-...+-+-..|++.
T Consensus       524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~  601 (913)
T KOG0495|consen  524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVP  601 (913)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcH
Confidence            33444555555555555555433334555555555555555566666666666542  3334445555556666778888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .|..++.+..+.... +...|-.-+..-....++++|..+|.+...  ..|+...|.--+..---.++.++|.+++++..
T Consensus       602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l  678 (913)
T KOG0495|consen  602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEAL  678 (913)
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            888888888776543 667787778888888888888888888776  34666666666666666788888888888877


Q ss_pred             hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010292          324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV  403 (513)
Q Consensus       324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  403 (513)
                      +. ++.-...|-.+-+.+-+.++++.|.+++..-.+..+..+..|.  .+...=-+.|.+-.|..+++....++  |.+.
T Consensus       679 k~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl--lLakleEk~~~~~rAR~ildrarlkN--Pk~~  753 (913)
T KOG0495|consen  679 KS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL--LLAKLEEKDGQLVRARSILDRARLKN--PKNA  753 (913)
T ss_pred             Hh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH--HHHHHHHHhcchhhHHHHHHHHHhcC--CCcc
Confidence            75 3334456667777788888888887777655555566666664  45555566778888888888877654  4456


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----------------------------CcccHhhHHHHHHHHHhcCCH
Q 010292          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-----------------------------WRLCRSLYHSKMVMYASQRRV  454 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~  454 (513)
                      ..|-..|+.=.+.|+.+.|..++.+..+.-                             +..|....-.+...|-...++
T Consensus       754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~  833 (913)
T KOG0495|consen  754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI  833 (913)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence            678888888888999888888777654321                             112333344445555666778


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +.|.+.|.+....+ +-+..+|.-+...+.++|.-+.-.+++.+....
T Consensus       834 ~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  834 EKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             HHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            88888888888765 445567778888888888877777777776543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=5.5e-09  Score=95.43  Aligned_cols=301  Identities=11%  Similarity=0.019  Sum_probs=212.9

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-----------------------------HHHHHHHhc
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-----------------------------TLISVFGRL  239 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-----------------------------~li~~~~~~  239 (513)
                      |...+-.....+-+.|...+|+..|......  .+-.-..|-                             .+..++...
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el  240 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL  240 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence            4444444444556677777777777666542  111222221                             122344444


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-C-CCHHHHHHHHHHHHhcCChHHHHH
Q 010292          240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-M-PDTNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~-p~~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      .+.+++..-.+.....|+.-+...-+....+.-...++|+|+.+|+++.+... . -|..+|+.++-.-....+    +.
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls  316 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LS  316 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HH
Confidence            56667777777777777654444444444455566788888888888877531 1 156777777744332222    22


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      .+..-.-.-.+--..|+..+.+-|+-.++.++|..-++..-++.++-...|+  .|.+-|....+...|++-++..++  
T Consensus       317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWT--LmGHEyvEmKNt~AAi~sYRrAvd--  392 (559)
T KOG1155|consen  317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWT--LMGHEYVEMKNTHAAIESYRRAVD--  392 (559)
T ss_pred             HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHH--HhhHHHHHhcccHHHHHHHHHHHh--
Confidence            2222111111123345666677777778778887778777788888888886  788999999999999999999888  


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW  477 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  477 (513)
                      ..|.|...|-.|.++|.-.+...=|+-+|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+...|.
T Consensus       393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~  470 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV  470 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence            678889999999999999999999999999988654 3478999999999999999999999999998877 44678899


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          478 IMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       478 ~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .|.+.|-+.++.++|...|++..+
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999887655

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.36  E-value=9.2e-11  Score=114.71  Aligned_cols=263  Identities=10%  Similarity=0.059  Sum_probs=126.3

Q ss_pred             CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010292          150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      .|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-+..| +...++.++.+....++.+.+.            .|...|
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt   85 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT   85 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence            556777777777777777777777766 67766666665 6666777777766666665554            466667


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHH
Q 010292          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYA  307 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~  307 (513)
                      |..|+.+|...||+..    |+...+        -.-.+...+...|.......++..+. ..+..||..+   ++.-..
T Consensus        86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv  150 (1088)
T KOG4318|consen   86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV  150 (1088)
T ss_pred             HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence            7777777777776655    222221        01112333444444444444443322 1233344432   222233


Q ss_pred             hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292          308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      ..|-++.+.+++..+....... ....  +++-....  ....++.....+...+ ...+.++..++.+-..+|+.+.|.
T Consensus       151 ~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak  224 (1088)
T KOG4318|consen  151 LEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAK  224 (1088)
T ss_pred             HHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHH
Confidence            4455555555554432211100 0000  12211111  1122233333333333 222333334555555555555555


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      .++.+|.++|........| .|+-+   .++...+..+++.|.+.|+.|+..|+...+..+.+
T Consensus       225 ~ll~emke~gfpir~HyFw-pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  225 NLLYEMKEKGFPIRAHYFW-PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             HHHHHHHHcCCCcccccch-hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence            5555555555444322222 22222   44555555555555555555555555544444444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.35  E-value=1.5e-09  Score=97.06  Aligned_cols=199  Identities=12%  Similarity=-0.016  Sum_probs=147.5

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      ....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.|++..+.  .+.+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence            45667778888888899999999998888766557788888888888889999999999888764  2445667777888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      .+...|++++|...|++....... .....+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence            888888999999888888764322 234566667778888888888888888877643 224567777888888888888


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      +|.+.+++..+. .+.+...+..+...+...|+.+.+....+.+
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            888888887765 3345555556666666677666665554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.34  E-value=4.3e-09  Score=102.50  Aligned_cols=132  Identities=17%  Similarity=0.118  Sum_probs=106.3

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292          367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  446 (513)
                      .|++..+...|...|++++|++++++.++.  .|+.+..|..-...+-+.|++.+|.+.++........ |...-+-.+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK  270 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHH
Confidence            455556778888999999999999999984  4666778888899999999999999999999877654 6676777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          447 MYASQRRVEEMESVLKEMENYKIDCSKK------TF--WIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       447 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .+.++|++++|.+++......+..|-..      .|  .....+|.+.|++..|++-|....+
T Consensus       271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8899999999999999998877544322      22  2345789999999999988776643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.33  E-value=1.6e-09  Score=96.81  Aligned_cols=202  Identities=12%  Similarity=0.094  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010292          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA  340 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  340 (513)
                      ...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|.+.++...+... .+...+.     
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~-----  103 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLN-----  103 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHH-----
Confidence            4455556666666666666666666665432 12345555556666666666666666665554321 1222222     


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010292          341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD  420 (513)
Q Consensus       341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  420 (513)
                                                     .+...+...|++++|.+.+++.......+.....+..+...+...|+++
T Consensus       104 -------------------------------~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  152 (234)
T TIGR02521       104 -------------------------------NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD  152 (234)
T ss_pred             -------------------------------HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence                                           2455556667777777777776654333333445666777788888888


Q ss_pred             HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|.+.+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus       153 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       153 KAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888888887765422 4556777788888888888888888888776 34566777778888888888888888887776


Q ss_pred             HC
Q 010292          501 KN  502 (513)
Q Consensus       501 ~~  502 (513)
                      +.
T Consensus       231 ~~  232 (234)
T TIGR02521       231 KL  232 (234)
T ss_pred             hh
Confidence            43

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=2e-08  Score=92.51  Aligned_cols=356  Identities=9%  Similarity=-0.047  Sum_probs=235.3

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      +.++.|...+.|...     ..|| +.-|...-.+|...|+|+++.+.-....+.++.-+..+..-..++-..|++++|+
T Consensus       129 kkY~eAIkyY~~AI~-----l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal  203 (606)
T KOG0547|consen  129 KKYDEAIKYYTQAIE-----LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL  203 (606)
T ss_pred             ccHHHHHHHHHHHHh-----cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence            578899999999987     4567 6677888889999999999998888777765544555555556666666666554


Q ss_pred             HH----------------------HHH---------HHH-hCCCCCCHHHHHHHHHHHHhc--------C----------
Q 010292          211 SL----------------------FRD---------LKK-EANISPSIVTYNTLISVFGRL--------L----------  240 (513)
Q Consensus       211 ~~----------------------~~~---------m~~-~~g~~p~~~~~~~li~~~~~~--------g----------  240 (513)
                      .=                      +++         |.+ +.-+-|+....++....+...        +          
T Consensus       204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~  283 (606)
T KOG0547|consen  204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA  283 (606)
T ss_pred             HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence            31                      111         110 011234444333333332110        0          


Q ss_pred             ----------ChhHHHHHHHHHHH-CCCCC--C---------HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292          241 ----------LVDHMEAAFQEIKD-SNLSP--N---------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       241 ----------~~~~A~~~~~~m~~-~g~~p--~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                                .+..|...+.+-.. ....+  +         ..+.+.....+.-.|+...|.+-|+..+...-.++ ..
T Consensus       284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~l  362 (606)
T KOG0547|consen  284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SL  362 (606)
T ss_pred             HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hH
Confidence                      11222222211110 00011  1         11222222234457888899999999887543322 23


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010292          299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA  378 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  378 (513)
                      |.-+..+|....+.++.++.|....+.+. .+..+|..=...+.-.++++.|..-++....+.+.+..+++  -+..+..
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i--Ql~~a~Y  439 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI--QLCCALY  439 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH--HHHHHHH
Confidence            77788889999999999999999888643 35566666666666667777777777777777777776654  4666667


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhH--HHHHHHHHhc
Q 010292          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLY--HSKMVMYASQ  451 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~--~~li~~~~~~  451 (513)
                      +.++++++...|++..++  -|..+.+|+.....+...++++.|.+.|+..++....     .+...+  -.++..- =.
T Consensus       440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk  516 (606)
T KOG0547|consen  440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WK  516 (606)
T ss_pred             HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hh
Confidence            888999999999999885  3555667999999999999999999999988654322     111111  1122111 24


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +++..|.+++++..+.+ +-....|..|...-.+.|+.++|+++|++-.
T Consensus       517 ~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  517 EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            89999999999999887 4455689999999999999999999998753

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.30  E-value=5.1e-07  Score=86.34  Aligned_cols=343  Identities=7%  Similarity=-0.017  Sum_probs=216.1

Q ss_pred             CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010292          150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      .|+..+...|-.=...|-..|.+-.+..+......-|+.   -..+|+.-.+.|.+.+.++-|..+|....+-  .+-+.
T Consensus       473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~  550 (913)
T KOG0495|consen  473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKK  550 (913)
T ss_pred             cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchh
Confidence            344445555555555555555555555555555555543   2345666666667777777777777777653  34455


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY  306 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  306 (513)
                      ..|......--..|..+....+|++....-. -....|-....-+...|+...|..++.+..+..-. +...|...+..-
T Consensus       551 slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle  628 (913)
T KOG0495|consen  551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE  628 (913)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence            6666666666666777777777777776532 24444555555666678888888888777664322 566777777777


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010292          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM  386 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  386 (513)
                      .....++.|..+|.+....  .++..+|.--+....-.++.++|.+..+-..+.-+.-..  .+..+...+-+.++.+.|
T Consensus       629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K--l~lmlGQi~e~~~~ie~a  704 (913)
T KOG0495|consen  629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK--LWLMLGQIEEQMENIEMA  704 (913)
T ss_pred             hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH--HHHHHhHHHHHHHHHHHH
Confidence            7778888888888776653  456666655555555555555544443322221111111  233566667777788888


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      .+.|....+  ..|...-.|-.+...=.+.|++-+|..++++..-.+.+ +...|-..|.+-.+.|..+.|..+..+..+
T Consensus       705 R~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  705 REAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             HHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            877766555  34444556766777667777888888888887766644 667788888888888888888777655544


Q ss_pred             C-----------------------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          467 Y-----------------------------KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       467 ~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      .                             ...-|.+..-.+...|....+++.|.+.|++..+.+
T Consensus       782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            2                             122355666666777777778888888888776553

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=2.7e-09  Score=107.46  Aligned_cols=179  Identities=6%  Similarity=-0.058  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      +++|...+++..+.... +...|..+...+...|++++|...|++..+.+  |+ ...+..+...+...|++++|...++
T Consensus       320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            44555555554443321 34444444444445555555555555544422  22 3344444444555555555555555


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010292          321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV  400 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  400 (513)
                      +..+.... +...+..+...+...|++++|...++...+...++.... ...+..++...|+.++|...+.++...  .+
T Consensus       397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~-~~~la~~l~~~G~~~eA~~~~~~~~~~--~~  472 (553)
T PRK12370        397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPIL-LSMQVMFLSLKGKHELARKLTKEISTQ--EI  472 (553)
T ss_pred             HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence            54443211 111112222233334444444444333222211111111 113444555556666666666554432  22


Q ss_pred             chHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292          401 TTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m  429 (513)
                      ......+.+...|+..|  +.|...++.+
T Consensus       473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~l  499 (553)
T PRK12370        473 TGLIAVNLLYAEYCQNS--ERALPTIREF  499 (553)
T ss_pred             hhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence            22333344444445544  3455544444

>PRK12370 invasion protein regulator; Provisional

Probab=99.28  E-value=6.7e-09  Score=104.63  Aligned_cols=170  Identities=6%  Similarity=-0.123  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ  250 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  250 (513)
                      ++++|...+++..+.++.+...|..+...+...|++++|...|++..+.  -+.+...|..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3566666666666655555566666666666666666666666666543  12234455555566666666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292          251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                      +..+.... +...+..++..+...|++++|...+++..... .| +...+..+..++...|++++|...++++... .+.
T Consensus       397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~  473 (553)
T PRK12370        397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EIT  473 (553)
T ss_pred             HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cch
Confidence            66554322 11222223333444566666666666654432 12 2333445555555666666666666554433 111


Q ss_pred             cHHHHHHHHHHHHhcC
Q 010292          330 EFPLIRAMICAYSKCS  345 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g  345 (513)
                      +....+.+...|...|
T Consensus       474 ~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        474 GLIAVNLLYAEYCQNS  489 (553)
T ss_pred             hHHHHHHHHHHHhccH
Confidence            2233334444444444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=4e-07  Score=83.78  Aligned_cols=182  Identities=12%  Similarity=0.080  Sum_probs=132.9

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      +...|..+|+......    .-+...|-..+..=.++.++..|..+|+.....-+.-...|---+..=-..|++..|.++
T Consensus        88 e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   88 EIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            4556888888776543    225667778888888999999999999988775433344565555555667999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010292          213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV  292 (513)
Q Consensus       213 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  292 (513)
                      |+.-..   ..|+...|++.|+.=.+-+.++.|..++++..-  +.|++.+|--....=-+.|+...|..+|+...+.  
T Consensus       164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--  236 (677)
T KOG1915|consen  164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--  236 (677)
T ss_pred             HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence            998874   589999999999999999999999999999886  3589999988888888899999999999887652  


Q ss_pred             CCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhc
Q 010292          293 MPDTNTYLLLLRGY----AHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       293 ~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~  325 (513)
                      --|...-..+..++    .+...++.|.-+|+...+.
T Consensus       237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~  273 (677)
T KOG1915|consen  237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH  273 (677)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11222223333333    3455566666666655543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.26  E-value=3.3e-09  Score=102.07  Aligned_cols=238  Identities=14%  Similarity=0.078  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcC-----CC-CCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc-----cC-C
Q 010292          262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAG-----PV-MPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHH-----VD-G  328 (513)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~  328 (513)
                      .+...+...|...|+++.|+.+++...+.     |. .|...+. +.+...|...+++++|..+|+++...     |. .
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            33444555666666666666666554331     21 1222222 22445556666666666666655431     11 1


Q ss_pred             C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 010292          329 K-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----  396 (513)
Q Consensus       329 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----  396 (513)
                      | -..+++.|..+|.+.|++++|+...+...++...       .+... .+-+...|+..+++++|..++....+.    
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~-l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ-LSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            1 1234455555666666666554443322222111       11111 234777788889999999888765541    


Q ss_pred             -C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC--c-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 010292          397 -K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GW--R-LCRSLYHSKMVMYASQRRVEEMESVLKEMEN-  466 (513)
Q Consensus       397 -~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-  466 (513)
                       + ..+....+++.|...|...|++++|.++++.+...    +.  . -....++.+...|.+.+++++|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence             1 12234678999999999999999999999987532    11  1 1244577888899999999999999986543 


Q ss_pred             ---CC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          467 ---YK--IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       467 ---~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                         .|  .+-...+|.-|...|.+.|+++.|.++.+...
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               22  22234678899999999999999999988764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.2e-07  Score=89.10  Aligned_cols=275  Identities=9%  Similarity=-0.027  Sum_probs=217.9

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL  303 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  303 (513)
                      -|........+-|-..+++.+..++++++.+.. ++....+-.-|.++...|+..+-..+=.+|.+.- +-...+|-++.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence            344444555566677889999999999998764 3567777777889999999888888888888743 22478999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292          304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL  383 (513)
Q Consensus       304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  383 (513)
                      --|...|+..+|.+.|.+....+. .-...|-.+...|.-.|.-|.|..++....+.-+....|..|  +..-|.+.++.
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~  396 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNL  396 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccH
Confidence            889999999999999988765432 234568888889999999999998887777777766677653  66778889999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc--ccHhhHHHHHHHHHhcCCHHHH
Q 010292          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWR--LCRSLYHSKMVMYASQRRVEEM  457 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~g~~~~A  457 (513)
                      +.|.+.|.+...  ..|.++-+++-+.-.....+.+.+|..+|+.....    +-+  --..+++.|..+|.+.+.+++|
T Consensus       397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            999999988877  66777777888877777889999999999876521    111  1334578888999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010292          458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV  508 (513)
Q Consensus       458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  508 (513)
                      +..+++..... +-|..+|.++.-.|...|+++.|.+.|.+..  ++.|+.
T Consensus       475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n  522 (611)
T KOG1173|consen  475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDN  522 (611)
T ss_pred             HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCcc
Confidence            99999998875 6789999999999999999999999999755  455554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=1.4e-07  Score=86.03  Aligned_cols=346  Identities=10%  Similarity=0.017  Sum_probs=225.0

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMT--KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK  208 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~  208 (513)
                      .+.+..|+.+++....+-- .+..+  ....+.+--.+.+.|+++.|+..|+...+..+.-...||.+|.+ ..-|+.++
T Consensus       250 kr~fskaikfyrmaldqvp-sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~-f~i~d~ek  327 (840)
T KOG2003|consen  250 KREFSKAIKFYRMALDQVP-SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICA-FAIGDAEK  327 (840)
T ss_pred             hhhHHHHHHHHHHHHhhcc-ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhh-eecCcHHH
Confidence            5567778888876665421 12111  22334444456788888888888887766543233445544444 34577777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHH-----------------------------------------------------------
Q 010292          209 CQSLFRDLKKEANISPSIVTY-----------------------------------------------------------  229 (513)
Q Consensus       209 A~~~~~~m~~~~g~~p~~~~~-----------------------------------------------------------  229 (513)
                      ..+.|.+|..-.| .||..-|                                                           
T Consensus       328 mkeaf~kli~ip~-~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl  406 (840)
T KOG2003|consen  328 MKEAFQKLIDIPG-EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL  406 (840)
T ss_pred             HHHHHHHHhcCCC-CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence            7777777764321 1111111                                                           


Q ss_pred             ----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-----------------------
Q 010292          230 ----------------NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IA-----------------------  269 (513)
Q Consensus       230 ----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~-----------------------  269 (513)
                                      -.-..-+.+.|+++.|+++++-+.+..-+.-...-|.| +-                       
T Consensus       407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d  486 (840)
T KOG2003|consen  407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID  486 (840)
T ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence                            12234577899999999999887654221111111100 00                       


Q ss_pred             ------------HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010292          270 ------------GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM  337 (513)
Q Consensus       270 ------------~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  337 (513)
                                  .....|++++|.+.|++.....-......|++=+ .+-..|++++|+++|-.+... ...++.+...+
T Consensus       487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qi  564 (840)
T KOG2003|consen  487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQI  564 (840)
T ss_pred             ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence                        0123578999999999988754333333344333 356789999999999776553 23466666677


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010292          338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN  417 (513)
Q Consensus       338 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  417 (513)
                      .+.|-...+...|.+.+.....+.+.+.  .+.+-|...|-+.|+-..|.+.+-+-.+  -.|.+..+...|..-|....
T Consensus       565 aniye~led~aqaie~~~q~~slip~dp--~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtq  640 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSLIPNDP--AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQ  640 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhcccCCCCH--HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhH
Confidence            7778776666655554433333333332  2233588899999999999887655443  44567777888888888888


Q ss_pred             cHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYA-SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       418 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      -+++++.+|++..  -+.|+..-|..+|..|. +.|+++.|.++|+...++ ++-|..+...|++.+...|.
T Consensus       641 f~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  641 FSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            9999999999864  46799999988876654 799999999999999865 67889999999999887764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=2.1e-08  Score=87.60  Aligned_cols=240  Identities=10%  Similarity=-0.007  Sum_probs=159.1

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292          265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (513)
                      +-+..+|.+.|-+.+|++.|+.-.+.  .|-+.||..|-+.|.+...++.|+.++.+-.+. ++-|+.....+...+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            45556666666666666666665543  345556666666666666666666666665554 333444444455555555


Q ss_pred             CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292          345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN  424 (513)
Q Consensus       345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  424 (513)
                      ++.+++.+.++...+....++....  .+...|.-.++.|-|+..|++++.-|...  ...|+.+.-+|.-.+++|-++.
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHH
Confidence            6666666666655555555444432  35566677788888888888888876554  4568888878888888888888


Q ss_pred             HHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          425 FVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       425 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      -|.+....--.|+  ...|..+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++......
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            8877764433333  3445556666677888888988888887766 456778888888888889999998888877765


Q ss_pred             CCCCCCCCCC
Q 010292          503 GYDVPVNAFP  512 (513)
Q Consensus       503 g~~p~~~t~~  512 (513)
                      .-..-..+||
T Consensus       459 ~P~m~E~~~N  468 (478)
T KOG1129|consen  459 MPDMAEVTTN  468 (478)
T ss_pred             Cccccccccc
Confidence            4444444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.15  E-value=1.7e-06  Score=82.83  Aligned_cols=201  Identities=12%  Similarity=-0.009  Sum_probs=111.6

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL  196 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  196 (513)
                      +++....-.+.-.+-++.++|........+.    -.-+...|..+.-.+-...++++|++.|......+..|...|.-+
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            4455555555555556666676666544332    333666777777777777888888888888777666666666666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH------
Q 010292          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIA------  269 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~------  269 (513)
                      --.-++-|+++...+.-.++.+.  .+-....|..+..++.-.|+...|..++++..+.. -.|+...|.....      
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~  193 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ  193 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence            66566666666666666666542  22334556666666666677777777766666543 1344444433322      


Q ss_pred             HHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ...+.|..++|.+.+..-...  ..|...| .+-...+.+.+++++|..++..+...
T Consensus       194 i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r  248 (700)
T KOG1156|consen  194 ILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER  248 (700)
T ss_pred             HHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence            223344545554444332221  1122222 12233344555555555555555554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=5.6e-06  Score=76.48  Aligned_cols=344  Identities=9%  Similarity=0.033  Sum_probs=203.8

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYN  230 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~  230 (513)
                      ..|+..+|.+.|+.=.+-+.++.|..+++...--. |++.+|---...=-++|+...|..+|+......|- .-+...++
T Consensus       170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv  248 (677)
T KOG1915|consen  170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV  248 (677)
T ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34455555555555555555555555555544322 34444544444445555555555555554432111 00111222


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHH--------HHHHHcCCCCCCHHHHH
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEI--------YQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~t~~  300 (513)
                      +....=.++..++.|..+|+-.+++= +.+  ...|......=-+.|+.......        |+.+.+.+ .-|-.+|-
T Consensus       249 aFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWf  326 (677)
T KOG1915|consen  249 AFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWF  326 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHH
Confidence            22222233444555555555444331 111  23333333333334444333322        23333322 23567777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhccCCCcH--HHHHHHHHH-----H---HhcCChhHHHHHHHHHHhCCCCCcccch-
Q 010292          301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEF--PLIRAMICA-----Y---SKCSVTDRIKKIEALMRLIPEKEYRPWL-  369 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-----~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~-  369 (513)
                      -.++.-...|+.+...++|++.+.. ++|-.  ..|...|-.     +   ....+.+...++++...++.+....++. 
T Consensus       327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK  405 (677)
T KOG1915|consen  327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK  405 (677)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence            7888888889999999999998876 44421  122222221     1   2346677777777766666555443331 


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292          370 -NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY  448 (513)
Q Consensus       370 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  448 (513)
                       .-+....-.++.++..|.+++...+.  ..| ...+|...|..=.+.+++|.+..++++..+.+.. +..+|......-
T Consensus       406 iWlmyA~feIRq~~l~~ARkiLG~AIG--~cP-K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE  481 (677)
T KOG1915|consen  406 IWLMYAQFEIRQLNLTGARKILGNAIG--KCP-KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE  481 (677)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhc--cCC-chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence             11233444567889999999987765  334 3557888888888999999999999999987744 667777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          449 ASQRRVEEMESVLKEMENYK-IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ...|+.+.|..+|+-..++. +.-....|.+.|+.-...|.++.|..+++++.+..
T Consensus       482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            78999999999999888653 22234567777777789999999999999987653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=3.5e-08  Score=86.32  Aligned_cols=227  Identities=12%  Similarity=0.027  Sum_probs=125.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 010292          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY-NYLIAGYM  272 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~  272 (513)
                      +.+.++|.+.|.+.+|...|+.-.++   .|-+.||-.|-++|.+..+.+.|+.+|.+-.+.  .|-.+|| .-+...+-
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence            44556666666666666666665543   455666666666666666666666666665543  2333333 23334555


Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010292          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK  352 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  352 (513)
                      ..++.++|.++|+...+.. ..++.....+...|.-.++++.|+.++.++...|.. +...|+.+--+|.-.+++|.+..
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence            5566666666666665532 224445555555566666666666666666666553 33444444444444555554433


Q ss_pred             HHHHHH-hCCCCC--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292          353 IEALMR-LIPEKE--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       353 ~~~~~~-~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  429 (513)
                      .++... .+..++  ...| |+ +.......|++..|.+.|+-.+..  .+.....+|.|.-.-.+.|++++|..++...
T Consensus       380 sf~RAlstat~~~~aaDvW-YN-lg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVW-YN-LGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHHHHhhccCcchhhhhh-hc-cceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            332221 122122  2233 22 444455566777777776655552  2334555666666666777777777777766


Q ss_pred             Hh
Q 010292          430 ES  431 (513)
Q Consensus       430 ~~  431 (513)
                      ..
T Consensus       456 ~s  457 (478)
T KOG1129|consen  456 KS  457 (478)
T ss_pred             hh
Confidence            54

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.10  E-value=4.4e-07  Score=88.66  Aligned_cols=297  Identities=12%  Similarity=0.069  Sum_probs=207.4

Q ss_pred             hHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010292          121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY  200 (513)
Q Consensus       121 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  200 (513)
                      ..|...+-.=++..+.|++.++.-...    +.............+.+.|+.++|..+|..+.++++.|..-|..+..+.
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            455555556678899999888764432    3333455577788999999999999999999999887887788887777


Q ss_pred             HHcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292          201 MYNG-----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       201 ~~~g-----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .-..     ..+...++|+++...   -|.......+.-.+.....+ ..+...+..+...|++   .+|+.|-..|...
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~  156 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP  156 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence            3333     578889999999865   25544443333333322223 3455667777788874   3566666666655


Q ss_pred             cCHHHHHHHHHHHHcC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292          275 WMWGKVEEIYQMMKAG----P----------VMPDT--NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      ...+-..+++......    |          -.|..  .++..+...|-..|++++|+++++..++.. +..+..|..-.
T Consensus       157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka  235 (517)
T PF12569_consen  157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA  235 (517)
T ss_pred             hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            5555556666655421    1          12343  455677888899999999999999999873 33477888889


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH----H--HHHHHH
Q 010292          339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR----I--MRCIVS  411 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~----~--~~~li~  411 (513)
                      ..|-+.|++.+|.+.++..+.+...+-  ++|+-.+..+.++|++++|.+++....+.+..+. +..    +  ......
T Consensus       236 rilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~  313 (517)
T PF12569_consen  236 RILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE  313 (517)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence            999999999988888887777665443  3355788899999999999999987766553221 111    1  244567


Q ss_pred             HHHhcCcHHHHHHHHHHHH
Q 010292          412 SYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       412 ~~~~~~~~~~a~~~~~~m~  430 (513)
                      +|.+.|++..|++.|..+.
T Consensus       314 a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  314 AYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            8888999988887766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.07  E-value=2e-07  Score=77.94  Aligned_cols=200  Identities=11%  Similarity=0.046  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010292          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV  376 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  376 (513)
                      .+..-|.-+|...|++..|.+-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.++....+.+++-... |+ ....
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL-NN-YG~F  112 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL-NN-YGAF  112 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh-hh-hhHH
Confidence            355667778888999999999999888873 34667788888889999999988888887777766654443 32 6778


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010292          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  456 (513)
                      +|..|++++|...|++.+....-+....+|..+..+..+.|+.+.|.+.|++..+.... .....-.+.....+.|++-.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence            89999999999999999998776666778888888888999999999999998876543 33445667788889999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       457 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      |..+++.....+. ++..+....|+.-...|+.+.+.++=..+.+
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999998874 8999999999999999999988887655544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.06  E-value=3.1e-06  Score=81.00  Aligned_cols=193  Identities=11%  Similarity=0.002  Sum_probs=124.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH--
Q 010292          126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTK-EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY--  202 (513)
Q Consensus       126 ~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~--  202 (513)
                      .+....+.++.+...+....+....  .++. .........+...|++++|.+++++..+..+.+...+.. ...+..  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~   90 (355)
T cd05804          14 LLLLLGGERPAAAAKAAAAAQALAA--RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLG   90 (355)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence            3333344555555555444433221  1222 222223344567899999999999988876556655553 222222  


Q ss_pred             --cCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292          203 --NGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       203 --~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                        .+..+.+.+.+....   ...|+. .....+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus        91 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~e  166 (355)
T cd05804          91 DFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKE  166 (355)
T ss_pred             ccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHH
Confidence              445555555555421   233443 4445666788889999999999999988653 356677888888999999999


Q ss_pred             HHHHHHHHHcCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          280 VEEIYQMMKAGPV-MPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       280 a~~~~~~m~~~g~-~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      |..++++.....- .|+  ...|..+...+...|++++|..+++.....
T Consensus       167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            9999998776321 233  235667888889999999999999987643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=4.3e-07  Score=83.84  Aligned_cols=155  Identities=9%  Similarity=-0.072  Sum_probs=105.6

Q ss_pred             HhcccCCHHHHHHHHHHHHhccC--C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292          165 FAGRINNVDLAADLFAEAANKHL--K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      .....+..+.++.-+.++.....  +  ....|..+...|...|+.++|...|++..+.  -+.+...|+.+...+...|
T Consensus        35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g  112 (296)
T PRK11189         35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAG  112 (296)
T ss_pred             ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence            34455677778888877776433  1  2456777777888888888888888888753  2345678888888888888


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292          241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      ++++|...|++..+.... +..+|..+..++...|++++|.+.|+...+.  .|+..........+...++.++|...++
T Consensus       113 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~  189 (296)
T PRK11189        113 NFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK  189 (296)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence            888888888888765432 4566777777777888888888888887763  3443222222233345567788888776


Q ss_pred             HHHh
Q 010292          321 LVKH  324 (513)
Q Consensus       321 ~~~~  324 (513)
                      ....
T Consensus       190 ~~~~  193 (296)
T PRK11189        190 QRYE  193 (296)
T ss_pred             HHHh
Confidence            5443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.04  E-value=3.6e-07  Score=88.27  Aligned_cols=134  Identities=16%  Similarity=0.142  Sum_probs=80.0

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHh----CC-CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKE----AN-ISPSIVTY-NTLISVFGRLLLVDHMEAAFQEIKDS-----NL-  257 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~g-~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-  257 (513)
                      ..+...+...|...|++++|..+++...+.    .| ..|.+.+. +.+...|...+++.+|..+|+++...     |- 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            445555777777777777777777765542    12 13343332 33666777777888887777777631     21 


Q ss_pred             CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          258 SP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVM-PD-TNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       258 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .| -..+++.|-..|.+.|++++|...++...+     .|.. |. ..-++.+...|+..+++++|..++....
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            11 234566666677778887777766655432     1221 22 2344556666777777888877776543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.02  E-value=5.8e-06  Score=80.92  Aligned_cols=355  Identities=11%  Similarity=0.067  Sum_probs=230.5

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYN  230 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~  230 (513)
                      ++-|...|..+.-++...|+++.+.+.|++....-+...+.|+.+-..|...|.-..|..+.++-... .-+|+ ...+-
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchHHH
Confidence            56699999999999999999999999999987655557889999999999999999999998876643 11243 33332


Q ss_pred             HHHHHHHhc-CCh--------------------------------------------------hHHHHHHHHHHHCCCCC
Q 010292          231 TLISVFGRL-LLV--------------------------------------------------DHMEAAFQEIKDSNLSP  259 (513)
Q Consensus       231 ~li~~~~~~-g~~--------------------------------------------------~~A~~~~~~m~~~g~~p  259 (513)
                      ..-..|.+. +.+                                                  .++.+.+++..+.+.. 
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            222222211 222                                                  3344455555443321 


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cC-----------
Q 010292          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VD-----------  327 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-----------  327 (513)
                      |..+.-.+---|+..++++.|.+..++..+-+-.-+...|..|.-.+...+++.+|+.+.+...+. |.           
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI  556 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence            222222233345566778888888888887654557788888888888888888888888775542 21           


Q ss_pred             -------CCcHHHHHHHHHHHHh---------cCC--------------hhHHHH----HHHHH----HhC------CCC
Q 010292          328 -------GKEFPLIRAMICAYSK---------CSV--------------TDRIKK----IEALM----RLI------PEK  363 (513)
Q Consensus       328 -------~~~~~~~~~li~~~~~---------~g~--------------~~~a~~----~~~~~----~~~------~~~  363 (513)
                             .--..|+..++..+-.         .|.              ..++.+    +....    +.+      +..
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s  636 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS  636 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence                   0011122222222220         000              000000    00000    000      100


Q ss_pred             Cc-----ccc-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292          364 EY-----RPW-----LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       364 ~~-----~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  433 (513)
                      ..     .+|     .+......+.+.++.++|...+.+...  ..+.....|......+...|+.++|.+.|......+
T Consensus       637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld  714 (799)
T KOG4162|consen  637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD  714 (799)
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence            01     111     122355667777888888877766655  445556667766677888899999999999877544


Q ss_pred             CcccHhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010292          434 WRLCRSLYHSKMVMYASQRRVEEMES--VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       434 ~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                      .. ++....++...+.+.|+..-|..  ++.++.+.| +.+...|-.+...+.+.|+.+.|.+.|....+..-.-++..|
T Consensus       715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF  792 (799)
T KOG4162|consen  715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF  792 (799)
T ss_pred             CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence            22 35566788889999998888888  999999988 678899999999999999999999999988776555555444


Q ss_pred             C
Q 010292          512 P  512 (513)
Q Consensus       512 ~  512 (513)
                      .
T Consensus       793 s  793 (799)
T KOG4162|consen  793 S  793 (799)
T ss_pred             c
Confidence            3

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.01  E-value=9.2e-06  Score=78.01  Aligned_cols=367  Identities=10%  Similarity=0.003  Sum_probs=235.0

Q ss_pred             hHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH
Q 010292          121 YAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA  199 (513)
Q Consensus       121 ~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~  199 (513)
                      ..|-.+++.+ .++....+.+.+.+.+.    .+-...+.....-.+...|+.++|.+....-.+..+.+.+.|+.+.-.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~   84 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK----FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL   84 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh----CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            3455666666 45666677777766652    333455666665667788999999999999888777889999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292          200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                      +-...++++|+..|....+-  -+-|...|.-+--.-++.++++.......++.+... -....|..+..++.-.|+...
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999863  244567787777777888999998888888877532 245678888888888999999


Q ss_pred             HHHHHHHHHcCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010292          280 VEEIYQMMKAGP-VMPDTNTYLLLL------RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK  352 (513)
Q Consensus       280 a~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  352 (513)
                      |..+.++..+.. -.|+...|....      ....+.|.+++|.+.+..-... +......--.-.+.+.+.+++++|..
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            999999988754 246666665443      3345678888888877655443 22233333455667888898998888


Q ss_pred             HHHHHHhCCCCCcccchHHHHHHHHHhc-CCHHHHHHHHH----------------------------------HHHhcC
Q 010292          353 IEALMRLIPEKEYRPWLNVLLIRVYAKE-DCLEEMEKSIN----------------------------------DAFEHK  397 (513)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~----------------------------------~~~~~~  397 (513)
                      ++..+....+.+..-+.  .+..++.+. +..+....+|.                                  .++++|
T Consensus       241 ~y~~Ll~rnPdn~~Yy~--~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg  318 (700)
T KOG1156|consen  241 VYRRLLERNPDNLDYYE--GLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG  318 (700)
T ss_pred             HHHHHHhhCchhHHHHH--HHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence            88888776666554432  233344311 11111112222                                  222322


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcC----------CcccHhh--HHHHHHHHHhcCCHHHHHHHH
Q 010292          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE----SAG----------WRLCRSL--YHSKMVMYASQRRVEEMESVL  461 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~  461 (513)
                      ..+    ++..+...|-.-...+-..++...+.    ..|          -.|+...  +-.++..|-+.|+++.|..++
T Consensus       319 ~p~----vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI  394 (700)
T KOG1156|consen  319 VPS----VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI  394 (700)
T ss_pred             CCc----hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            211    23333333333222221111111111    111          0334333  345567777888888888888


Q ss_pred             HHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          462 KEMENYKIDCS-KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       462 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      +...+.  .|+ ...|..-.+.+...|+.++|..++++.++..
T Consensus       395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD  435 (700)
T ss_pred             HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence            887754  343 3344455577888888888888888776553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1e-06  Score=82.96  Aligned_cols=279  Identities=11%  Similarity=0.004  Sum_probs=161.5

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      -+......-..-+-..+++.+..++++...+..+.+...+-.=|..+...|+..+-..+=.+|...  .+-...+|-++.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence            355555555566666777777777777777766555556666666777777777766666677654  344456777777


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCC-CCCHHHHHHHHHHHHhc
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPV-MPDTNTYLLLLRGYAHS  309 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~-~p~~~t~~~ll~~~~~~  309 (513)
                      -.|--.|...+|.+.|.+....  .|. ...|-.+.+.|+-.|..|+|+..|...-+  .|. .|    +--+.--|.+.
T Consensus       320 ~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t  393 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRT  393 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHh
Confidence            7776677777777777765542  222 34566667777777777777776665443  121 12    12223335566


Q ss_pred             CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCcccch--HHHHHHHHHhcCCH
Q 010292          310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEKEYRPWL--NVLLIRVYAKEDCL  383 (513)
Q Consensus       310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~--~~~li~~~~~~~~~  383 (513)
                      ++++.|.+.|.+.... .+.|..+.+-+--.....+.+.+|...++...    ...... ..|.  ..-|..+|.+.+.+
T Consensus       394 ~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             ccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhhH
Confidence            7777777777766654 23455555555555555555555544433222    111111 1221  22366666666667


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  446 (513)
                      ++|+..+++.+.  ..+.+..++.++.-.|...|+++.|.+.|.+..  .+.|+..+-..++.
T Consensus       472 ~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  472 EEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK  530 (611)
T ss_pred             HHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence            777766666665  334455566666666666677777766666654  34455444444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.98  E-value=9.9e-06  Score=77.56  Aligned_cols=164  Identities=12%  Similarity=-0.035  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      ...|..+...+...|+.+.+.+.+....+....+   ..........+...|++++|.+++++....  .+.|...+.. 
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-   82 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-   82 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence            3445555555556666666666666555443322   122222334455667777777777776653  2233333332 


Q ss_pred             HHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010292          233 ISVFGR----LLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA  307 (513)
Q Consensus       233 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  307 (513)
                      ...+..    .+..+.+.+.++.  ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~  159 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE  159 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            212222    3344444444433  1112222 2333444556666777777777777776643 223455666666677


Q ss_pred             hcCChHHHHHHHHHHHhc
Q 010292          308 HSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~  325 (513)
                      ..|++++|...++...+.
T Consensus       160 ~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         160 MQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HcCCHHHHHHHHHhhhhc
Confidence            777777777777666553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.3e-05  Score=72.92  Aligned_cols=303  Identities=10%  Similarity=0.028  Sum_probs=207.6

Q ss_pred             CCCCHHHHHHHHHHhccc--CCHHHHHHHHHHHHhc-cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292          152 TPMTKEEYTKGIKFAGRI--NNVDLAADLFAEAANK-HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      +++.......-+.+++..  ++-..|...+-.+... -++ |+.....+...+...|+.++|...|++...   +.|+..
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i  266 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNV  266 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhh
Confidence            444444444555555443  3333444444333332 235 899999999999999999999999999874   345443


Q ss_pred             -HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292          228 -TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY  306 (513)
Q Consensus       228 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  306 (513)
                       ........+.+.|++++...+...+.... +-+...|-.-.......+++..|+.+-++-.+.. .-+...|..--..+
T Consensus       267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL  344 (564)
T KOG1174|consen  267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL  344 (564)
T ss_pred             hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence             23333344567888888888888777531 1234445555556667788999999998887743 12455666666778


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCcccchHHHHHH--H-HHhcCC
Q 010292          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE-ALMRLIPEKEYRPWLNVLLIR--V-YAKEDC  382 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~li~--~-~~~~~~  382 (513)
                      ...|++++|.-.|...... -+.+...|..|+.+|...|.+.+|.-.- ..++.++. +..+.   .++.  . +-...-
T Consensus       345 ~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~L---tL~g~~V~~~dp~~  419 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSL---TLFGTLVLFPDPRM  419 (564)
T ss_pred             HhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhh---hhhcceeeccCchh
Confidence            8899999999999887775 2358889999999999999888765443 33333332 22222   1221  1 112234


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292          383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      -|+|.+++++.+..  .|.-....+.+...|...|..+.+..++++...  ..||....+.|.+.+...+.+++|++.|.
T Consensus       420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            57888888887774  344455577788889999999999999998764  35788888999999999999999999999


Q ss_pred             HHHhCC
Q 010292          463 EMENYK  468 (513)
Q Consensus       463 ~m~~~~  468 (513)
                      ...+.+
T Consensus       496 ~ALr~d  501 (564)
T KOG1174|consen  496 KALRQD  501 (564)
T ss_pred             HHHhcC
Confidence            888765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=8.8e-06  Score=72.43  Aligned_cols=152  Identities=12%  Similarity=0.037  Sum_probs=88.8

Q ss_pred             HHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          122 AFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       122 ~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      .....|..|   -++.++|+..+..+.+..    .++...+..|.-.+.-.|.+.+|..+-....+    ++-.-..|+.
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfh  129 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFH  129 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHH
Confidence            334444444   357777777777665532    33555555565555566777777766655433    3334444455


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHccCH
Q 010292          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA-GYMTAWMW  277 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~  277 (513)
                      .-.+.++-++-..+-+.+...      ..---+|....-....+++|+.++......+  |+-...|.-+. +|.+..-+
T Consensus       130 lahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  130 LAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchh
Confidence            555666666655555555421      1222334444444456889999999888653  55666665553 55667777


Q ss_pred             HHHHHHHHHHHc
Q 010292          278 GKVEEIYQMMKA  289 (513)
Q Consensus       278 ~~a~~~~~~m~~  289 (513)
                      +-+.++++--.+
T Consensus       202 dvsqevl~vYL~  213 (557)
T KOG3785|consen  202 DVSQEVLKVYLR  213 (557)
T ss_pred             hhHHHHHHHHHH
Confidence            777777776655

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=2.6e-07  Score=85.36  Aligned_cols=221  Identities=12%  Similarity=0.085  Sum_probs=159.8

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292          199 AYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW  277 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  277 (513)
                      .+.-.|+.-.|.+-|+.....   .|... .|.-+...|....+-++....|++....+.. |..+|..-...+.-.+++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~  410 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQY  410 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHH
Confidence            345578889999999998863   33333 3888888899999999999999998876543 667777777777778889


Q ss_pred             HHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292          278 GKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       278 ~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  356 (513)
                      ++|..=|++.+.  +.| +...|.-+.-+..+.+++++++..|++.++. ++....+|+-....+...++++.|.+-++.
T Consensus       411 e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~  487 (606)
T KOG0547|consen  411 EEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK  487 (606)
T ss_pred             HHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence            999999999887  344 4677878888888899999999999999886 666788899999999999999999888888


Q ss_pred             HHhCCCC------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292          357 MRLIPEK------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       357 ~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  429 (513)
                      ..++.+.      +..+.+.-.++.. .-.+++..|.+++.+.++  ..|.....|..|...-.+.|+.++|+++|++.
T Consensus       488 ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  488 AIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8877766      3333322111111 122566666666666665  33333444666666666666666666666654

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.93  E-value=1.2e-06  Score=80.98  Aligned_cols=182  Identities=12%  Similarity=-0.050  Sum_probs=125.4

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      ..+.++.-+..+.........-....|..+...|.+.|+.++|...|++..+..+.+...|+.+...+...|++++|.+.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34445555555544322111112456777788889999999999999999998777899999999999999999999999


Q ss_pred             HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292          213 FRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       213 ~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      |++..+.   .| +..+|..+..++...|++++|.+.|+...+..  |+..........+...++.++|...|++.....
T Consensus       121 ~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        121 FDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            9999863   45 46788888889999999999999999998754  443322222333445678999999997755422


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                       .|+...+   .......|+.+.+ +.++.+.+
T Consensus       196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~  223 (296)
T PRK11189        196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKA  223 (296)
T ss_pred             -CccccHH---HHHHHHccCCCHH-HHHHHHHh
Confidence             3332222   2223345666554 35555543

>PF12854 PPR_1: PPR repeat

Probab=98.91  E-value=1.9e-09  Score=62.39  Aligned_cols=32  Identities=38%  Similarity=0.528  Sum_probs=13.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEI  252 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (513)
                      |+.||..|||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.91  E-value=2.2e-06  Score=71.84  Aligned_cols=192  Identities=10%  Similarity=-0.093  Sum_probs=153.8

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      +...|.-.|.+.|+...|.+-+++..+..+.+..+|..+...|-+.|+.+.|.+-|++..+.  -+-+-.+.|...-.+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence            44556777889999999999999999988778889999999999999999999999998864  2334567888888889


Q ss_pred             hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292          238 RLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      ..|.+++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++-.+..-. ...+...+.+...+.|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            9999999999999988752111 2467888888888999999999999998875321 3567788888899999999999


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 010292          317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI  353 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  353 (513)
                      ..++.....+. ++..+.-..|..--..|+.+.+.+-
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y  229 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY  229 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence            99998888766 7777766677777777766655444

>PF12854 PPR_1: PPR repeat

Probab=98.88  E-value=2.6e-09  Score=61.82  Aligned_cols=34  Identities=38%  Similarity=0.542  Sum_probs=27.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292          255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      +|+.||..|||+||++||+.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            0567888888888888888888888888888874

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=6.5e-06  Score=74.74  Aligned_cols=292  Identities=8%  Similarity=-0.039  Sum_probs=199.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHccCH
Q 010292          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF-TYNYLIAGYMTAWMW  277 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~  277 (513)
                      +.+..++...|...+-.+....-++-|+.....+.+.+...|+.++|+..|++..-.+  |+.. ......-.+.+.|++
T Consensus       205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~  282 (564)
T KOG1174|consen  205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGC  282 (564)
T ss_pred             HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCH
Confidence            3344566666666555554433466678888999999999999999999999987632  3321 222222334578888


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      ++...+...+.... .-....|-.-...+...+++..|+.+-++.++.. +.+...+-.--..+...|+.+.|.-+++..
T Consensus       283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            98888888776531 1233344444455566788999999988887753 234444544455677778888777777766


Q ss_pred             HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHhcCCc
Q 010292          358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV-SSYF-RCNAVDKLANFVKRAESAGWR  435 (513)
Q Consensus       358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~  435 (513)
                      ..+.+.....+  .-++.+|...|+..+|.-+-+...+.  .+.+..++..+. ..|. ....-++|.++++.....  .
T Consensus       361 q~Lap~rL~~Y--~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~  434 (564)
T KOG1174|consen  361 QMLAPYRLEIY--RGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--N  434 (564)
T ss_pred             HhcchhhHHHH--HHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--C
Confidence            66655555443  46999999999999998777665552  223344443331 2222 234567899998876643  3


Q ss_pred             cc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          436 LC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       436 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      |+ ....+.+...+...|..++++.+++....  ..||....+.|.+.+.....+++|++.|....+.
T Consensus       435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            43 34456677788899999999999999875  3689999999999999999999999988876544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.79  E-value=2.2e-07  Score=84.54  Aligned_cols=250  Identities=8%  Similarity=0.028  Sum_probs=110.1

Q ss_pred             cccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010292          167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM  245 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A  245 (513)
                      .-.|++..++.-.+ ....... .......+.+++...|+.+.+   ..++..  +-.|.......+...+...++-+.+
T Consensus        12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~--~~~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKK--SSSPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-T--TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhcc--CCChhHHHHHHHHHHHhCccchHHH
Confidence            34466666654444 2221111 334445555666666665533   233332  1245555444444444332333334


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          246 EAAFQEIKDSNLSPNVFTYNYL-IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       246 ~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ..-+++....+...+..++..+ ...+...|++++|++++..-      -+.......+..+.+.++++.|.+.++.|.+
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3333333322222122222222 13344456666666555431      2444555555666666666666666666655


Q ss_pred             ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010292          325 HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR  404 (513)
Q Consensus       325 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  404 (513)
                      .+  .|.. ..-+..+                                .+..+...+.+.+|..+|+++..+  .+++..
T Consensus       160 ~~--eD~~-l~qLa~a--------------------------------wv~l~~g~e~~~~A~y~f~El~~~--~~~t~~  202 (290)
T PF04733_consen  160 ID--EDSI-LTQLAEA--------------------------------WVNLATGGEKYQDAFYIFEELSDK--FGSTPK  202 (290)
T ss_dssp             CS--CCHH-HHHHHHH--------------------------------HHHHHHTTTCCCHHHHHHHHHHCC--S--SHH
T ss_pred             cC--CcHH-HHHHHHH--------------------------------HHHHHhCchhHHHHHHHHHHHHhc--cCCCHH
Confidence            32  2222 1112221                                222222234566666666665543  123445


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010292          405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLKEMEN  466 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~  466 (513)
                      +++.+..++...|++++|.+++.+....... +..+...+|......|+. +.+.+++.++..
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            5666666666666666666666665443322 344444445444455554 455556666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.78  E-value=5.5e-07  Score=81.92  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=93.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      +.+..|.+.++++.|.+.++.|.+......-..+..+.+......+.+.+|..+|+++.+. ..++..+.+.+..++...
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~  214 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL  214 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence            5788899999999999999998875332222222233333333344789999999998654 567888899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHC
Q 010292          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMCKN  502 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~  502 (513)
                      |++++|.+++++..+.+ +-+..+...++-+....|+. +.+.+++.++...
T Consensus       215 ~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             T-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            99999999999988776 45777888888888888888 6677788877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.77  E-value=7.5e-05  Score=81.12  Aligned_cols=338  Identities=9%  Similarity=-0.052  Sum_probs=207.6

Q ss_pred             hcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----CCCH--HHHHHHHHHHH
Q 010292          166 AGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-----SPSI--VTYNTLISVFG  237 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-----~p~~--~~~~~li~~~~  237 (513)
                      +...|+++.+..+++.+..... .+..........+...|++++|...+........-     .+..  .....+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            3445667766666666533211 12333344455566789999999999887643111     1111  12223334566


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHHHHHHHHh
Q 010292          238 RLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLLLLRGYAH  308 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~  308 (513)
                      ..|++++|...+++..+.-...+.    ...+.+...+...|++++|...+++....    |- .....++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            889999999999988763111222    34566666778899999999999887642    21 1123455666778889


Q ss_pred             cCChHHHHHHHHHHHh----ccCC--C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C--cccchHHHHHHHHH
Q 010292          309 SGNLPRMEKIYELVKH----HVDG--K-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-E--YRPWLNVLLIRVYA  378 (513)
Q Consensus       309 ~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~~li~~~~  378 (513)
                      .|++++|...+++..+    .+..  + ....+..+...+...|+++.|.........+... +  ........+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            9999999999887654    2221  1 2233445556677789999887665544333221 1  11111223556777


Q ss_pred             hcCCHHHHHHHHHHHHhcCC---CCchH-HHH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCccc---HhhHHHHHHHHHh
Q 010292          379 KEDCLEEMEKSINDAFEHKT---SVTTV-RIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLC---RSLYHSKMVMYAS  450 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~---~~~~~-~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~  450 (513)
                      ..|+.++|.+.+.+......   ..... ... ...+..+...|+.+.|.+++...........   ...+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            88999999999888754211   11100 001 1122444567899999998876543221111   1113456677888


Q ss_pred             cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          451 QRRVEEMESVLKEMENY----KIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      .|++++|..++++....    |... ...++..+..++.+.|+.++|...+.+..+..
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999887653    3222 23456677788999999999999999887654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.73  E-value=0.00025  Score=67.09  Aligned_cols=376  Identities=9%  Similarity=0.060  Sum_probs=225.4

Q ss_pred             cCchhHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010292          117 HSNGYAFVELMKQLGSR-PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA  195 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~-~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (513)
                      .-|..+|..+++....+ .+++.+.++.+...    .+-+...|..-|+.-.+.++++...++|.+....-. +...|..
T Consensus        17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~l   91 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKL   91 (656)
T ss_pred             CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHH
Confidence            44778999999999654 56788889887653    566888999999999999999999999998776422 6778887


Q ss_pred             HHHHHHH-cCChH----HHHHHHHHHHHhCCCCCCH-HHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCC-
Q 010292          196 LLGAYMY-NGLSD----KCQSLFRDLKKEANISPSI-VTYNTLISVF---------GRLLLVDHMEAAFQEIKDSNLSP-  259 (513)
Q Consensus       196 li~~~~~-~g~~~----~A~~~~~~m~~~~g~~p~~-~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~g~~p-  259 (513)
                      -|.---+ .|+..    .....|+-...+.|+.+-. ..|+..+..+         ....+++...++++++...-+.- 
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            7764433 23332    3334455555444544433 2344444432         33345666777888877542211 


Q ss_pred             -----CHHHHHHHHHHHH-------HccCHHHHHHHHHHHHc--CCCCCCHHH---------------HHHHH-------
Q 010292          260 -----NVFTYNYLIAGYM-------TAWMWGKVEEIYQMMKA--GPVMPDTNT---------------YLLLL-------  303 (513)
Q Consensus       260 -----~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~p~~~t---------------~~~ll-------  303 (513)
                           |-..|..=|+-..       +...+..|.+++++...  +|+..+..+               |-.+|       
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp  251 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP  251 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence                 1122221121111       12234455555555432  232111100               11111       


Q ss_pred             ------------------------------------------HHHHhcCC-------hHHHHHHHHHHHhccCCCcHHHH
Q 010292          304 ------------------------------------------RGYAHSGN-------LPRMEKIYELVKHHVDGKEFPLI  334 (513)
Q Consensus       304 ------------------------------------------~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~  334 (513)
                                                                +.+...|+       .+++.++++..++.-..-+..+|
T Consensus       252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly  331 (656)
T KOG1914|consen  252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY  331 (656)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                      11112222       23344444443332222223333


Q ss_pred             HHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010292          335 RAMICAYSKCS---VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS  411 (513)
Q Consensus       335 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  411 (513)
                      ..+.+---..-   ..+......+.+......+..-. +-.+++.-.+..-++.|..+|.+..+.+..+..+.++++++.
T Consensus       332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE  410 (656)
T KOG1914|consen  332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV-YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME  410 (656)
T ss_pred             HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence            32222111111   12222223333333333332222 335777777888899999999999998877777888889988


Q ss_pred             HHHhcCcHHHHHHHHHH-HHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 010292          412 SYFRCNAVDKLANFVKR-AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQ  488 (513)
Q Consensus       412 ~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~  488 (513)
                      -|| .++.+-|..+|+- ++..|-  +.......++.+...++-..|..+|+.....++.|+  ...|..++.--..-|+
T Consensus       411 y~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd  487 (656)
T KOG1914|consen  411 YYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD  487 (656)
T ss_pred             HHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence            665 5788999999995 444443  344456778888899999999999999998866654  4789999999999999


Q ss_pred             HhHHHHHHHHHHH
Q 010292          489 RRKVNQVLGLMCK  501 (513)
Q Consensus       489 ~~~A~~~~~~m~~  501 (513)
                      ...+.++-+++..
T Consensus       488 L~si~~lekR~~~  500 (656)
T KOG1914|consen  488 LNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=9.4e-06  Score=77.01  Aligned_cols=219  Identities=13%  Similarity=0.087  Sum_probs=163.1

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhH
Q 010292          166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDH  244 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~  244 (513)
                      +.+.|++.+|.-.|+...+.++.+...|-.|.......++-..|+..+.+..+   +.| |....-.|.-.|...|.-..
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhHHH
Confidence            46788899999999998888777899999999999999999999999988885   345 45677778888888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCh
Q 010292          245 MEAAFQEIKDSNLSPNVFTYNYLI-----------AGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       245 A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~  312 (513)
                      |...|+.=+...++     |-.+.           ..+.....+....++|-++.. .+..+|...+..|--.|.-.|++
T Consensus       372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            98888876543211     11111           111122234455666666543 45446666777777778888999


Q ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010292          313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  392 (513)
                      +.|...|+..... .+.|..+||.|--.+....+.++|..++....++.+.-+..+ |+ |.-+|...|.+++|.+.|-+
T Consensus       447 draiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-yN-lgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  447 DRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-YN-LGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-hh-hhhhhhhhhhHHHHHHHHHH
Confidence            9999999988875 345788899999899888888888888888888887777777 43 77788888999999888866


Q ss_pred             HHh
Q 010292          393 AFE  395 (513)
Q Consensus       393 ~~~  395 (513)
                      .+.
T Consensus       524 AL~  526 (579)
T KOG1125|consen  524 ALS  526 (579)
T ss_pred             HHH
Confidence            543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.64  E-value=0.00054  Score=66.22  Aligned_cols=339  Identities=12%  Similarity=0.072  Sum_probs=223.1

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      ..|-..+..+.+.|++......|+.....-+.  ...+|...+...-..|-++-++.+++.-.+-     +...-+.-|.
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie  177 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIE  177 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHH
Confidence            47777888888999999999999987765332  5678999999999999999999999998852     4445778888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHccCHH---HHHHHHHHHHcCCCCCC--HHHHHHHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSN------LSPNVFTYNYLIAGYMTAWMWG---KVEEIYQMMKAGPVMPD--TNTYLLLL  303 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~--~~t~~~ll  303 (513)
                      .+++.+++++|-+.+.......      -+-+...|..+-+..++.-+.-   .+..+++.+..  .-+|  ...|++|.
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLA  255 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLA  255 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHH
Confidence            9999999999999988876421      2345667777777666654333   34445555443  2355  56789999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC----------------hh---HHHHHHHHHHhCCCCC
Q 010292          304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV----------------TD---RIKKIEALMRLIPEKE  364 (513)
Q Consensus       304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------~~---~a~~~~~~~~~~~~~~  364 (513)
                      +-|.+.|.++.|..+|++....-  .++.-|+.+.++|..-..                -+   +.+-.+..++.+....
T Consensus       256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr  333 (835)
T KOG2047|consen  256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR  333 (835)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence            99999999999999999877652  244445555555553211                00   0000011111111100


Q ss_pred             cccchHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010292          365 YRPWLNVLL------------IRVYAKEDCLEEMEKSINDAFEHKTS----VTTVRIMRCIVSSYFRCNAVDKLANFVKR  428 (513)
Q Consensus       365 ~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~  428 (513)
                      ... .|..+            -..-+..|+..+-...|.+.++.-..    -.....|..+...|...|+++.|..+|++
T Consensus       334 ~~~-lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek  412 (835)
T KOG2047|consen  334 PLL-LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK  412 (835)
T ss_pred             chH-HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            000 01101            11122335666677777777663111    11244688899999999999999999999


Q ss_pred             HHhcCCccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CC-------CCHHHHHHHHHHHHhcCC
Q 010292          429 AESAGWRLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYK----------ID-------CSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       429 m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~-------p~~~~~~~li~~~~~~g~  488 (513)
                      ..+...+--   ..+|..-...-.++.+++.|.++.+.....-          -.       -+...|..+++.-...|-
T Consensus       413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt  492 (835)
T KOG2047|consen  413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT  492 (835)
T ss_pred             hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            876554422   3344444555567888999999887665321          11       244567777777788889


Q ss_pred             HhHHHHHHHHHHHCCCC
Q 010292          489 RRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       489 ~~~A~~~~~~m~~~g~~  505 (513)
                      ++....+++++.+..+-
T Consensus       493 festk~vYdriidLria  509 (835)
T KOG2047|consen  493 FESTKAVYDRIIDLRIA  509 (835)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999887664

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=0.00069  Score=64.90  Aligned_cols=55  Identities=9%  Similarity=0.007  Sum_probs=39.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH--------HHHHCCCCCC
Q 010292          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG--------LMCKNGYDVP  507 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~  507 (513)
                      ....|.+++...-+..-.-.....-.++.....+|+++.|.+++.        .+.+.+..|-
T Consensus       356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~  418 (652)
T KOG2376|consen  356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG  418 (652)
T ss_pred             HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence            567788888777655422224455567788899999999999999        6666665554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.60  E-value=0.00077  Score=65.25  Aligned_cols=301  Identities=9%  Similarity=0.098  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------ChhHHHHH
Q 010292          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----------------------LVDHMEAA  248 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A~~~  248 (513)
                      ..|++|..-|.+.|++++|..+|++..+.   ..++.-|+.+.++|+.-.                      +++-...-
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            35666666666777777777776666543   344445555555554321                      12222333


Q ss_pred             HHHHHHCCC-----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcCC
Q 010292          249 FQEIKDSNL-----------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP------DTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       249 ~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------~~~t~~~ll~~~~~~g~  311 (513)
                      |+.+.+.+.           .-++..|..-..  +..|+..+....|.+..+. +.|      -...|..+.+.|-..|+
T Consensus       326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~  402 (835)
T KOG2047|consen  326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD  402 (835)
T ss_pred             HHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence            333333211           011222222221  2245566666666666542 222      23567788888889999


Q ss_pred             hHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-------ccc---------hHHH
Q 010292          312 LPRMEKIYELVKHHVDGKE---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-------RPW---------LNVL  372 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~---------~~~~  372 (513)
                      ++.|..+|+...+-..+--   ..+|..-..+-.+..+++.|.++++....++.+..       .|-         +.+.
T Consensus       403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~  482 (835)
T KOG2047|consen  403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM  482 (835)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence            9999999998877533221   33454444555555555554444433333333211       010         0112


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHh-
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-RSLYHSKMVMYAS-  450 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~-  450 (513)
                      .++.--..|-++....+++.++......|..  .......+..+.-++++.+++++-...-.-|+ ...|+..+.-+.+ 
T Consensus       483 y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r  560 (835)
T KOG2047|consen  483 YADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR  560 (835)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence            3333344467777778888888765544322  22222334456677888888886544333344 3557766665553 


Q ss_pred             --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHhHHHHHHHHHH
Q 010292          451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYY--AYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~  500 (513)
                        .-.++.|..+|++..+ |++|...-+-.|+.  .-.+.|....|++++++..
T Consensus       561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence              4468899999999987 76654432222222  2235677788888888743

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=0.00011  Score=64.18  Aligned_cols=193  Identities=11%  Similarity=0.025  Sum_probs=111.8

Q ss_pred             HHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH-HHHH
Q 010292          123 FVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA-LLGA  199 (513)
Q Consensus       123 ~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-li~~  199 (513)
                      +.+++..+-  ++...|.+++....++    .+.+......|..+|-...++..|-+.++++-...+. ..-|.. -.+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQS   87 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQS   87 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHH
Confidence            344444442  2445555555544332    2235566666666777777777777777776654332 111211 1344


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292          200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW  277 (513)
Q Consensus       200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  277 (513)
                      +-+.+.+.+|+++...|..    .|+...-..-+.+.  -..+|+..+..++++....   -+..+.+.......+.|++
T Consensus        88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence            5566777777777766642    13332222222222  2356677777777766532   2344444444455678888


Q ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292          278 GKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       278 ~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                      ++|.+-|+...+ .|.+| ...|+..+-. .+.|+.+.|++...+++++|+..
T Consensus       161 EaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~  211 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQ  211 (459)
T ss_pred             HHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhc
Confidence            999888888776 45554 4567666544 46678888888888888887754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=0.00091  Score=64.12  Aligned_cols=49  Identities=14%  Similarity=0.076  Sum_probs=33.7

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      .+.+..++|+..++-....   +..+...-.+.+.+.|++++|+.+|+.+.+
T Consensus        90 Yrlnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~k  138 (652)
T KOG2376|consen   90 YRLNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAK  138 (652)
T ss_pred             HHcccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4677888888777722221   444555556777788888888888888865

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.55  E-value=2.8e-05  Score=69.51  Aligned_cols=187  Identities=14%  Similarity=0.031  Sum_probs=112.5

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTY  229 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~  229 (513)
                      .....+-.+...+.+.|++++|...|+++....+.+   ..++..+..++...|++++|+..|+++.+...-.|.. .++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            356677777888889999999999999988765543   3567888888999999999999999998652111221 234


Q ss_pred             HHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010292          230 NTLISVFGRL--------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL  301 (513)
Q Consensus       230 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  301 (513)
                      ..+..++.+.        |+.+.|.+.|+++...... +...+..+.... .   ....      ..        .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~-~---~~~~------~~--------~~~~~  171 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD-Y---LRNR------LA--------GKELY  171 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH-H---HHHH------HH--------HHHHH
Confidence            4455555543        6788888888888865322 222222111100 0   0000      00        01123


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292          302 LLRGYAHSGNLPRMEKIYELVKHHVD--GKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      +...+.+.|++++|...++...+...  +.....+..+..++.+.|+++++...++.+..
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44456666777777776666665421  12344566666667777766666665554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.55  E-value=0.00054  Score=61.15  Aligned_cols=196  Identities=9%  Similarity=-0.057  Sum_probs=112.3

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-TLI  233 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-~li  233 (513)
                      ++.-.--+-+.+...|++..|+.-|....+.++.+-.++-.-...|...|+...|+.=+....+   ++||-..-. --.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg  113 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhc
Confidence            3333344566677889999999999988886444444444445678888999999998888885   478854322 233


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHH------------HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPN--VFTY------------NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY  299 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  299 (513)
                      ..+.+.|.+++|..=|+.+++....-+  ...+            ...+..+...|+...|+.....+.+-. ..|...|
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~  192 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR  192 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence            456788999999999999987643211  0111            112223334455555555555555521 1244444


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292          300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      ..=..+|...|++..|+.=++...+... .+......+-..+...|+.+.....++
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            4555555555555555544444443321 223333334444555554444433333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.54  E-value=6.7e-05  Score=77.38  Aligned_cols=222  Identities=15%  Similarity=0.100  Sum_probs=120.5

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------
Q 010292          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------  226 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------  226 (513)
                      +.+...+..|+..+...+++++|.++.+...+..+.....|-.+...+...++.+++..+  .+...  ...+.      
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve  103 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVE  103 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHH
Confidence            346677788888888999999999999877666554555555555577777776666555  33321  11111      


Q ss_pred             -------------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010292          227 -------------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       227 -------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                                   ..+..+..+|-+.|+.++|..+++++.+... -|..+.|.+...|+.. ++++|.+++.+....   
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                         3444455555555555555555555555442 2455555555555555 555555555554432   


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 010292          294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL  373 (513)
Q Consensus       294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  373 (513)
                                  +...+++..+.++|..+..... .+...+-.                +.+.+......+-...+.-.+
T Consensus       179 ------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~----------------i~~ki~~~~~~~~~~~~~~~l  229 (906)
T PRK14720        179 ------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLR----------------IERKVLGHREFTRLVGLLEDL  229 (906)
T ss_pred             ------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHH----------------HHHHHHhhhccchhHHHHHHH
Confidence                        3334445555555555544311 12221111                111111111111111112246


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010292          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF  414 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  414 (513)
                      -..|-...+++++..+++.+++..  +.+.....-++.+|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~  268 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence            677778888888888888888743  334444555666555

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=3.8e-05  Score=73.06  Aligned_cols=253  Identities=10%  Similarity=0.013  Sum_probs=175.3

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHH
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~  314 (513)
                      +.+.|++..|.-.|+..++..+. +...|-.|.......++-..|+..+++-.+  +.|+ ....-.|.-.|...|.-.+
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence            46788899999999988876543 778899888888888888889999988887  4454 6777788888888888888


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHH----HhcCChhHHHHHHHHHHhC---CCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292          315 MEKIYELVKHHVDGKEFPLIRAMICAY----SKCSVTDRIKKIEALMRLI---PEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      |...++.-+....+ -...-..-...-    ...-+.+....+.+.|.++   ......+.+...|.-.|--.|.+++|.
T Consensus       372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            99888876543211 000000000000    0000111112222223222   222345555556788888899999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 010292          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME--  465 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--  465 (513)
                      +.|+..+.  ..|.+..+||.|...++...+.++|+.-|.+..+....--..-|| |.-.|...|.+++|.+.|-+..  
T Consensus       451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999988  668899999999999999999999999999998765443344466 5558899999999999886544  


Q ss_pred             -hCC------CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010292          466 -NYK------IDCSKKTFWIMYYAYATCGQRRKVNQV  495 (513)
Q Consensus       466 -~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~  495 (513)
                       +++      ..++...|..|=.++.-.++.|.+.+.
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence             331      123456788888888888887755544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.53  E-value=0.00054  Score=74.49  Aligned_cols=303  Identities=9%  Similarity=-0.012  Sum_probs=181.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHH
Q 010292          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL------SPNV--FTYNYLIAG  270 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~--~~~~~li~~  270 (513)
                      .....|+++.+.+.++.+... ....+..........+...|++++|..++++..+.--      .+..  .....+-..
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            344567777777776665321 1111222223444555678999999999988754210      1111  122223345


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccC---CC--cHHHHHHHHHHH
Q 010292          271 YMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD---GK--EFPLIRAMICAY  341 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~  341 (513)
                      +...|++++|...+++....--..+    ....+.+...+...|++++|...+++......   .+  ....+..+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            5679999999999998765311112    23445666677889999999999988764211   11  123445566678


Q ss_pred             HhcCChhHHHHHHHHHHhCCC----CCcc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Q 010292          342 SKCSVTDRIKKIEALMRLIPE----KEYR--PWLNVLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTTVRIMRCIVSS  412 (513)
Q Consensus       342 ~~~g~~~~a~~~~~~~~~~~~----~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~  412 (513)
                      ...|+++.|....+.......    ....  ......+...+...|++++|...+.+.....   ........+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            889999988776543333211    1111  1112234556677799999999988765521   111123345556677


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCcc-cHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 010292          413 YFRCNAVDKLANFVKRAESAGWRL-CRSLY-----HSKMVMYASQRRVEEMESVLKEMENYKIDCS---KKTFWIMYYAY  483 (513)
Q Consensus       413 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~  483 (513)
                      +...|+.+.|.+.+.......... ....+     ...+..+...|+.+.|..++...........   ...+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            888999999999988875421110 00111     1122445568999999999877654321111   11245677888


Q ss_pred             HhcCCHhHHHHHHHHHHHC
Q 010292          484 ATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       484 ~~~g~~~~A~~~~~~m~~~  502 (513)
                      ...|++++|...+++....
T Consensus       702 ~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        702 ILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999887653

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.52  E-value=0.00011  Score=76.83  Aligned_cols=227  Identities=12%  Similarity=0.127  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHH
Q 010292          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA  336 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      ...|-..|....+.++.++|.+++++.+.. +++-   -...|.++++.-..-|.-+...++|++..+..  ....+|..
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence            345666666666666666666666665542 1110   12345555555555565666666666666541  12334566


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010292          337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC  416 (513)
Q Consensus       337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  416 (513)
                      |...|.+.+..++|.++++.|-+-.......|+  ..+..+.+.++-+.|..++.+.++.-............+..-.+.
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~--~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWI--MYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHH--HHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            666666666666666665555444334444453  566666677777777777777666332222444555566666778


Q ss_pred             CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHhHH
Q 010292          417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK--KTFWIMYYAYATCGQRRKV  492 (513)
Q Consensus       417 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A  492 (513)
                      |+.+.+..+|+.....-.+ -...|+.+|+.-.++|+.+.+..+|++....++.|-.  ..|...+..--+.|+-+.+
T Consensus      1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            8888888888877654432 4567888888888888888888888888888776543  3455555555555664443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=0.00014  Score=71.96  Aligned_cols=149  Identities=13%  Similarity=0.125  Sum_probs=90.0

Q ss_pred             CHHHHHHHHH--HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CC
Q 010292          155 TKEEYTKGIK--FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI--------SP  224 (513)
Q Consensus       155 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~--------~p  224 (513)
                      |..|-..+++  .|...|+.|.|.+-.+.++     +..+|..|.+.|.+.++.|-|.-.+..|..-.|.        .|
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~  799 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG  799 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            5566666654  4677888888887777665     4568888888888888888777776666432111        12


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      + .+=.-+.-.....|.+++|..+|.+-+.         |..|=..|-..|.+++|.++-+.=..-.   =..||..-..
T Consensus       800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~  866 (1416)
T KOG3617|consen  800 E-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK  866 (1416)
T ss_pred             c-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence            2 2222222233466777888888777664         3444455666777777777655432211   2335555555


Q ss_pred             HHHhcCChHHHHHHHHH
Q 010292          305 GYAHSGNLPRMEKIYEL  321 (513)
Q Consensus       305 ~~~~~g~~~~a~~~~~~  321 (513)
                      -+-..++.+.|++.|++
T Consensus       867 ~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  867 YLEARRDIEAALEYYEK  883 (1416)
T ss_pred             HHHhhccHHHHHHHHHh
Confidence            55556666666666654

>PLN02789 farnesyltranstransferase

Probab=98.51  E-value=0.00027  Score=65.42  Aligned_cols=132  Identities=11%  Similarity=0.007  Sum_probs=58.1

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh--HHH
Q 010292          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN-NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS--DKC  209 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A  209 (513)
                      ..+.|+...+.+.+.    .|-+..+|+..-.++.+.| +++++++.++++.+.++++..+|+.-...+.+.|+.  +++
T Consensus        52 ~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         52 RSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence            344455555544442    1223333333333333334 345555555555554444444454444333333331  344


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292          210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      +++++++.+.  -+-|..+|+...-++.+.|+++++++.++++++.++ -|..+|+.....+
T Consensus       128 l~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl  186 (320)
T PLN02789        128 LEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHH
Confidence            4455444432  123344454444444444555555555555554433 2444444444333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=0.0007  Score=68.78  Aligned_cols=244  Identities=13%  Similarity=0.147  Sum_probs=129.3

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292          200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                      +..++-+++|+.+|++..      .+....+.||.-   .+.++.|.++-++..      ...+|..+..+-.+.|.+.+
T Consensus      1058 ai~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred             HhhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHH
Confidence            344445566666665442      234444444433   244555555544432      34567777777777777777


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292          280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      |++-|-+.      -|...|..+++.+.+.|.+++-.+++....+....|.+.  +.||-+|.+.+++.+.++.   +. 
T Consensus      1123 AieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f---i~- 1190 (1666)
T KOG0985|consen 1123 AIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF---IA- 1190 (1666)
T ss_pred             HHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH---hc-
Confidence            77765332      256678888888888888888888887777766666555  4678888887765543322   11 


Q ss_pred             CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH---------
Q 010292          360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE---------  430 (513)
Q Consensus       360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---------  430 (513)
                        .++.... . .+.+-|...+.++.|.-+|...          .-|..|...+...|++..|.+--++..         
T Consensus      1191 --gpN~A~i-~-~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 --GPNVANI-Q-QVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred             --CCCchhH-H-HHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence              1111111 1 2455555556666655544321          124444444444555444443332211         


Q ss_pred             -------------hcCC--cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292          431 -------------SAGW--RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT  485 (513)
Q Consensus       431 -------------~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  485 (513)
                                   -.|.  -....-..-++..|-..|-+++-+.+++.-.... ......|+-|.-.|.+
T Consensus      1257 faCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence                         1121  1222334455666666666666666665543221 2233445555545544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=0.00066  Score=60.85  Aligned_cols=338  Identities=8%  Similarity=0.082  Sum_probs=198.0

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI-  233 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li-  233 (513)
                      ++-....+++...+.|+-++-..+-+.+..    +.+---+|....-..-.+.+|++++......   .|+-...|.-+ 
T Consensus       120 ~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~A  192 (557)
T KOG3785|consen  120 TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMA  192 (557)
T ss_pred             ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHH
Confidence            555556667777788887777766666554    2233344444444445788999999998865   46666666544 


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--ccCHHHHH--H----------HHHHHHcCC--------
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT--AWMWGKVE--E----------IYQMMKAGP--------  291 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~--~----------~~~~m~~~g--------  291 (513)
                      -+|.+..-++-+.++++--... +.-++..-|.......+  .|+..+.+  +          ..+.+.+++        
T Consensus       193 LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE  271 (557)
T KOG3785|consen  193 LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE  271 (557)
T ss_pred             HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence            4556777777777887766643 22234455554444333  22221111  1          111111111        


Q ss_pred             ----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH-HHh-cCChhHHHHHHHHHHhC
Q 010292          292 ----VMPD-----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSK-CSVTDRIKKIEALMRLI  360 (513)
Q Consensus       292 ----~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~-~g~~~~a~~~~~~~~~~  360 (513)
                          +-|.     ...-..|+--|.+.+++.+|..+.+++.-  ..|.......++.+ +++ .|.-+-..-+.+.|.-.
T Consensus       272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV  349 (557)
T KOG3785|consen  272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV  349 (557)
T ss_pred             cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence                1111     12333455567788999999888766543  22333333333332 222 23333333344444444


Q ss_pred             CCCC----cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010292          361 PEKE----YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL  436 (513)
Q Consensus       361 ~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  436 (513)
                      .+..    ..|. ...+..++.-..++++.+-.++.+..- ...++...| .+.++++..|++.+|+++|-.+....++ 
T Consensus       350 G~Sa~ecDTIpG-RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-  425 (557)
T KOG3785|consen  350 GESALECDTIPG-RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-  425 (557)
T ss_pred             cccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-
Confidence            3332    3333 235777777778888888777765542 222333334 3788999999999999999887765555 


Q ss_pred             cHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010292          437 CRSLY-HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF-WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       437 ~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                      |..+| ..|.++|.+++..+.|..++-.+...   -+..+. ..+..-|-+.+.+--|.+.|+.+...  .|+.+.|
T Consensus       426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence            45555 56678889999999998877666532   233333 34557788888888888888888754  4555544

>PLN02789 farnesyltranstransferase

Probab=98.48  E-value=0.00042  Score=64.17  Aligned_cols=145  Identities=8%  Similarity=-0.092  Sum_probs=82.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ++..+-..+...++.++|+.+.+++.+..+.+..+|+.--.++...| +++++++.++++.+.  -+-+..+|+...-.+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence            44444455556666777777777776665555556665555555555 456777777666653  233344555444444


Q ss_pred             HhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292          237 GRLLLV--DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY  306 (513)
Q Consensus       237 ~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  306 (513)
                      .+.|..  +.+..+++++.+... -|..+|+.....+.+.|+++++++.++++++.+.. |...|+.....+
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl  186 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI  186 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence            444442  455666666665443 25666666666666666666666666666665433 444444444333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00099  Score=67.73  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 010292          406 MRCIVSSYFRCNAVDKLANFVKRAESAGWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMEN-YKIDCSKKTFWIMYYAY  483 (513)
Q Consensus       406 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~  483 (513)
                      +.-++.-|...|-+++.+.+++...  |.. ...-.|+-|.-.|.+- ++++..+-++-.-. .++       --+++++
T Consensus      1282 Leeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNi-------pKviRA~ 1351 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNI-------PKVIRAA 1351 (1666)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcch-------HHHHHHH
Confidence            5567777777777777777766543  221 1233455555555543 33433333332221 122       2588999


Q ss_pred             HhcCCHhHHHHHHHHH
Q 010292          484 ATCGQRRKVNQVLGLM  499 (513)
Q Consensus       484 ~~~g~~~~A~~~~~~m  499 (513)
                      .++.-|.+..-++.+-
T Consensus      1352 eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1352 EQAHLWSELVFLYDKY 1367 (1666)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999998888777654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.48  E-value=0.00015  Score=75.81  Aligned_cols=133  Identities=6%  Similarity=0.020  Sum_probs=62.8

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN  265 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  265 (513)
                      ....|-.-|......++.++|.+++++....-++.-.   ...|.++++.-...|.-+...++|++..+..  -...+|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            4445555555555555555555555555432111110   1234444444444444455555555554431  1123455


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      .|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.+..+
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            5555555555555555555555442 112344555555555555555555555555444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.46  E-value=0.00017  Score=70.56  Aligned_cols=167  Identities=8%  Similarity=0.031  Sum_probs=87.1

Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010292          306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  385 (513)
                      ......+..|+.+++.+..+..  -...|..+.+.|...|+++.|++.+-.-      +.    +.-.|..|.++|+|+.
T Consensus       742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------~~----~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------DL----FKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc------ch----hHHHHHHHhccccHHH
Confidence            3344555566666655554422  2223455556666666666554443211      11    1125566666666666


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      |.++-.+...  .. .....|-+-..-+-.+|++.+|.+++-.+.    .|+     ..|.+|-+.|..++.+++.++-.
T Consensus       810 a~kla~e~~~--~e-~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h  877 (1636)
T KOG3616|consen  810 AFKLAEECHG--PE-ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH  877 (1636)
T ss_pred             HHHHHHHhcC--ch-hHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence            6655433222  11 123334444444445556655555543321    122     23556777777777777666543


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       466 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..-+   ..|...+..-|...|+.+.|.+-|-+.
T Consensus       878 ~d~l---~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  878 GDHL---HDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             hhhh---hHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            2221   245666777788888888888766544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=1.7e-05  Score=77.29  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=119.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010292          230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS  309 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  309 (513)
                      ..+...+...|-...|..+|+++.         .|.-+|.+|+..|+..+|..+..+-.+  -.||...|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence            445555666666666666666554         255566666666666666666666555  245666666666655554


Q ss_pred             CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHH
Q 010292          310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS  389 (513)
Q Consensus       310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  389 (513)
                      .-++.|.++.+.....       .-..+.......++++.+.+-++.--++..-....|.  .+..+..+.++++.|.+.
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf--~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF--GLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH--hccHHHHHHhhhHHHHHH
Confidence            4555666665543221       0011111122245555555554444444444444452  245555566666666666


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      |..-..  ..|.+...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+-|.+++|++.+.++..
T Consensus       542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            655544  44555556666666666777666666666666665532 344455555556666666666666665543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.43  E-value=4.3e-05  Score=74.64  Aligned_cols=240  Identities=11%  Similarity=0.048  Sum_probs=171.4

Q ss_pred             CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292          151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       151 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      +.+|--..-..+...+.+.|-...|..+|+++        +.|.-+|.+|+..|+.++|.++..+..++   +||...|.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc  461 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYC  461 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHH
Confidence            35555555667888889999999999999975        46788899999999999999999888764   79999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      .+.+......-+++|.++++..-.+       .-..+.....+.++++++.+.|+.-.+.+ ..-..+|-..-.+..+.+
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE  533 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence            9999988888899999999876542       11111222233688999999888755522 123567777777888889


Q ss_pred             ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010292          311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI  390 (513)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  390 (513)
                      +++.|.+.|...... -+.+...||.+-.+|.+.|+-.++...++...+..-.+...|.|  .+....+.|.+++|.+.+
T Consensus       534 k~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN--ymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN--YMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             hhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec--hhhhhhhcccHHHHHHHH
Confidence            999999999887774 34467789999999999986665555444444444334444433  344567889999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHHH
Q 010292          391 NDAFEHKTSVTTVRIMRCIVSS  412 (513)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~li~~  412 (513)
                      .++........+..+...++..
T Consensus       611 ~rll~~~~~~~d~~vl~~iv~~  632 (777)
T KOG1128|consen  611 HRLLDLRKKYKDDEVLLIIVRT  632 (777)
T ss_pred             HHHHHhhhhcccchhhHHHHHH
Confidence            8877643322233334444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.42  E-value=6.1e-05  Score=67.34  Aligned_cols=185  Identities=10%  Similarity=-0.104  Sum_probs=124.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--H
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--F  262 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~  262 (513)
                      ....+..+...+...|++++|...|+++...   .|+.    .++..+..++.+.|++++|...++++.+.......  .
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            5677888888999999999999999999864   3432    46778889999999999999999999875432122  2


Q ss_pred             HHHHHHHHHHHc--------cCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHH
Q 010292          263 TYNYLIAGYMTA--------WMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL  333 (513)
Q Consensus       263 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  333 (513)
                      ++..+..++.+.        |+.++|.+.|+.+...  .|+. ..+..+.... .   ...      ...        ..
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~------~~~--------~~  168 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRN------RLA--------GK  168 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHH------HHH--------HH
Confidence            444445555544        7788999999998774  3442 2222221111 0   000      000        11


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292          334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      ...+...|.+.|+++.|...++.+....+.. ..+.....+..++...|++++|..+++.+...
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            1245667889999998888776665544332 22222336899999999999999999887664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=0.003  Score=63.07  Aligned_cols=147  Identities=14%  Similarity=0.064  Sum_probs=91.9

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHH----------HHHhC--------
Q 010292          159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD----------LKKEA--------  220 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----------m~~~~--------  220 (513)
                      |..|=+.|-..|.+++|.++-+.--+-.  =..||..-..-+-..++.+.|++.|++          |..++        
T Consensus       829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv  906 (1416)
T KOG3617|consen  829 YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV  906 (1416)
T ss_pred             HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence            3445556667788888888776533222  234666666666677888888888764          22220        


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292          221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      .-..|...|.-....+-..|+++.|+.+|...++         |-+++...|-.|+.++|-++-++-      -|...+.
T Consensus       907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcY  971 (1416)
T KOG3617|consen  907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACY  971 (1416)
T ss_pred             HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHH
Confidence            0122444455555556667888888888877764         455666666677777777666542      2555666


Q ss_pred             HHHHHHHhcCChHHHHHHHHHH
Q 010292          301 LLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      .|.+.|-..|++.+|...|.+.
T Consensus       972 hlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  972 HLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHH
Confidence            6777777777777777666553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=0.001  Score=63.17  Aligned_cols=359  Identities=10%  Similarity=-0.021  Sum_probs=207.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|...|......    -+++...|..-..+|++.|++++|++=-.+-.+..+.=...|+....++.-.|++++|+
T Consensus        15 ~~d~~~ai~~~t~ai~l----~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~   90 (539)
T KOG0548|consen   15 SGDFETAIRLFTEAIML----SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI   90 (539)
T ss_pred             cccHHHHHHHHHHHHcc----CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence            46788899888877664    35588889999999999999999988777666655444678999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHc----------
Q 010292          211 SLFRDLKKEANISPSIVTYNTLISVFGRL---LLVDHMEAAFQEIKDS---NLSPNVFTYNYLIAGYMTA----------  274 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~----------  274 (513)
                      .-|.+-.+.  .+-|...++-+..++...   ++.-.--.++..+...   ........|..++..+-+.          
T Consensus        91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d  168 (539)
T KOG0548|consen   91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND  168 (539)
T ss_pred             HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence            999988764  344566777777777211   0000000111111110   0000112233333322211          


Q ss_pred             cCHHHHHHHHHH-----HHcCC-------CCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHH
Q 010292          275 WMWGKVEEIYQM-----MKAGP-------VMP------------D----------TNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       275 g~~~~a~~~~~~-----m~~~g-------~~p------------~----------~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .++..+.-.+..     +...|       ..|            |          ..-...+.++..+..+++.+.+-++
T Consensus       169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~  248 (539)
T KOG0548|consen  169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA  248 (539)
T ss_pred             HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            011111111110     00011       111            1          1234566777778888888999888


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--------hHHHHHHHHHhcCCHHHHHHHHHH
Q 010292          321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--------LNVLLIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~  392 (513)
                      ...+..  .+..-++..-.+|...|........   ..+-.+.+-..+        ..+.+..+|.+.++++.++..|.+
T Consensus       249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~---c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k  323 (539)
T KOG0548|consen  249 KALELA--TDITYLNNIAAVYLERGKYAECIEL---CEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK  323 (539)
T ss_pred             HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcc---hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence            888764  4555566666677777755432221   111111111111        111244467777888888888877


Q ss_pred             HHhcCCCCchHHH------------------------HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292          393 AFEHKTSVTTVRI------------------------MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY  448 (513)
Q Consensus       393 ~~~~~~~~~~~~~------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  448 (513)
                      .+.....+....-                        ...=.+.+.+.|++..|...|.++++.. +-|...|....-+|
T Consensus       324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY  402 (539)
T ss_pred             HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence            6554333221110                        1112345566777888888888777665 33667777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+.|.+..|+.=.+...+.+ ++....|..=..++....+|+.|++.|++-++.
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77888777777766666654 444555555555566666777777777766554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.00018  Score=62.81  Aligned_cols=292  Identities=13%  Similarity=0.113  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IAG  270 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~  270 (513)
                      -+++.+..+.+..++++|++++..-.++  -+.+......|..+|-...++..|-..++++-..  .|...-|... ...
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            3666777777777777777777766653  1226666777777777777777777777777653  3444444332 234


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010292          271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY--AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD  348 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  348 (513)
                      +-+.+.+..|+++...|...   ++...-..-+.+.  ...+++..+..++++....   .+..+.+.......+.|+.+
T Consensus        88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence            45667777777777776652   2322222222222  2355666666666554422   13333333344445666665


Q ss_pred             HHHHHHHHHHhCCCCCcccch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH-------------------HHH
Q 010292          349 RIKKIEALMRLIPEKEYRPWL-NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR-------------------IMR  407 (513)
Q Consensus       349 ~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-------------------~~~  407 (513)
                      .|.+-++..-+.  .+..+.. | .+.-+..+.|+++.|++...+++++|.... ...                   .-+
T Consensus       162 aAvqkFqaAlqv--sGyqpllAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  162 AAVQKFQAALQV--SGYQPLLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             HHHHHHHHHHhh--cCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence            443333322222  2333321 2 244445566677777777766666653321 000                   001


Q ss_pred             HHH-------HHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          408 CIV-------SSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       408 ~li-------~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                      .++       ..+.+.|+++.|.+-+..|- +.....|+.|...+.-. -..+++-+..+-++-+.+.+ +....||..+
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANl  316 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANL  316 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence            122       22334566666666666552 11122333333222111 11233333333333333333 3456789999


Q ss_pred             HHHHHhcCCHhHHHHHHHH
Q 010292          480 YYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       480 i~~~~~~g~~~~A~~~~~~  498 (513)
                      +-.||++.-++.|..++-+
T Consensus       317 LllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhh
Confidence            9999999888888877643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.38  E-value=3.3e-05  Score=66.40  Aligned_cols=120  Identities=9%  Similarity=0.068  Sum_probs=92.1

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hhH
Q 010292          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF-GRLLL--VDH  244 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~-~~~g~--~~~  244 (513)
                      ..++.+++...++...+.++.+...|..+...|...|++++|...|++..+.  .+-|...+..+..++ ...|+  .++
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            3666777888888877777778888888888888888888888888888764  233566777777653 56666  488


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      |.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus       129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            88888888876543 6777888888888888888888888888774

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.38  E-value=0.00011  Score=63.20  Aligned_cols=162  Identities=14%  Similarity=0.022  Sum_probs=118.7

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      |..+ ..+-..+.-.|+-+....+..........+....+..+....+.|++.+|...|.+...  .-++|..+|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence            4444 55566666777777777777776655445777777788888888888888888888875  45777888888888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  314 (513)
                      +|-+.|+.+.|..-|.+..+.-. -+...+|.|.-.+.-.|+.+.|..++......+.. |...-..+.......|++++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence            88888888888888888776533 24556666777777778888888888887765532 66666777777788888888


Q ss_pred             HHHHHHH
Q 010292          315 MEKIYEL  321 (513)
Q Consensus       315 a~~~~~~  321 (513)
                      |..+...
T Consensus       221 A~~i~~~  227 (257)
T COG5010         221 AEDIAVQ  227 (257)
T ss_pred             HHhhccc
Confidence            8777654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.36  E-value=0.0017  Score=61.09  Aligned_cols=235  Identities=12%  Similarity=-0.016  Sum_probs=154.2

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCChHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL---KTIGTYNALLGAYMYNGLSDK  208 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~  208 (513)
                      -+++.-.++|+.+......+-.|...    ++.-=.-..++..+.+.-+.++..+.   ++...+...+.+......-..
T Consensus       217 ydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~  292 (484)
T COG4783         217 YDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQ  292 (484)
T ss_pred             CCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccc
Confidence            35555556666665422222222222    11111223455556666666655433   245556666665554444344


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292          209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      +-.++.+-.+.   .-...-|..-+. +...|+.+.|+..++.+..... -|..-+......+.+.++.++|.+.++.+.
T Consensus       293 ~~~~~~~~~~~---~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal  367 (484)
T COG4783         293 AADLLAKRSKR---GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKAL  367 (484)
T ss_pred             hHHHHHHHhCc---cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            43333333221   123344554444 4467899999999999887633 355666666788999999999999999998


Q ss_pred             cCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010292          289 AGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP  367 (513)
Q Consensus       289 ~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  367 (513)
                      ..  .|+ ......+..++.+.|++.+|..+++..... .+.|...|..|..+|...|+..++..+              
T Consensus       368 ~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A--------------  430 (484)
T COG4783         368 AL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA--------------  430 (484)
T ss_pred             hc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH--------------
Confidence            84  566 666777888999999999999999988776 456888999999999999987766554              


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292          368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                           ....|...|+++.|+..+....+..
T Consensus       431 -----~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         431 -----RAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             -----HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence                 4567778899999998887776653

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.36  E-value=7.1e-07  Score=52.57  Aligned_cols=33  Identities=33%  Similarity=0.420  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010292          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD  295 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  295 (513)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            567777777777777777777777777777665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.36  E-value=0.00056  Score=70.83  Aligned_cols=237  Identities=12%  Similarity=0.127  Sum_probs=150.0

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +...|..|+..+...+++++|.++.+.....   .|+.. .|-.+...+.+.++.+++..+                 .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            7889999999999999999999999977754   45543 333444466666665555444                 23


Q ss_pred             HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292          268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                      +.......++.-+..+...|...+  -+...+..+..+|-+.|+.+++..+++++.+.. +.|..+.|-+...|... ++
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence            333334445544555555565532  345578888888999999999999999998876 56788888888888888 77


Q ss_pred             hHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010292          348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK  427 (513)
Q Consensus       348 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  427 (513)
                      ++|.+...                -.+..|....++.++.++|.++....  +.+...+-.+                .+
T Consensus       166 ~KA~~m~~----------------KAV~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i----------------~~  211 (906)
T PRK14720        166 EKAITYLK----------------KAIYRFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRI----------------ER  211 (906)
T ss_pred             HHHHHHHH----------------HHHHHHHhhhcchHHHHHHHHHHhcC--cccchHHHHH----------------HH
Confidence            77666533                23444666677888888887777632  2222222222                22


Q ss_pred             HHHhc-CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          428 RAESA-GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       428 ~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      .+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus       212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            22111 222223444455556666667777777777766654 234444555555554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.35  E-value=8.9e-07  Score=52.14  Aligned_cols=33  Identities=12%  Similarity=0.215  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292          475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP  507 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  507 (513)
                      +|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566677777777777777777777777776665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=0.0031  Score=59.97  Aligned_cols=92  Identities=11%  Similarity=0.039  Sum_probs=70.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010292          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR  453 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  453 (513)
                      ...+.+.|++..|.+.|.+++...  |.+...|..-.-+|.+.|.+..|+.=-+...+... +....|.-=..++....+
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHH
Confidence            556778899999999999999854  77899999999999999999999887776665531 223334333444555678


Q ss_pred             HHHHHHHHHHHHhCC
Q 010292          454 VEEMESVLKEMENYK  468 (513)
Q Consensus       454 ~~~A~~~~~~m~~~~  468 (513)
                      ++.|.+.|++-.+.+
T Consensus       442 ydkAleay~eale~d  456 (539)
T KOG0548|consen  442 YDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            899999999988876

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.32  E-value=0.00068  Score=66.48  Aligned_cols=139  Identities=16%  Similarity=0.221  Sum_probs=98.7

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      ..+.+....+.+.+|+.+++.+..+... ..-|..+...|+..|+++.|.++|.+.-          .++-.|..|.+.|
T Consensus       737 kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~  805 (1636)
T KOG3616|consen  737 KAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG  805 (1636)
T ss_pred             HHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence            4456667889999999999988876432 3357778888999999999999986542          3456788899999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292          241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .|++|.++-++..  |.+.....|-.-..-+-+.|++.+|+++|-.+..    |+.     .|..|-+.|..++.+++.+
T Consensus       806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHH
Confidence            9999998876653  4455666676666667778888888877744332    442     3455666666666665554


Q ss_pred             H
Q 010292          321 L  321 (513)
Q Consensus       321 ~  321 (513)
                      +
T Consensus       875 k  875 (1636)
T KOG3616|consen  875 K  875 (1636)
T ss_pred             H
Confidence            3

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.29  E-value=1e-06  Score=51.50  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010292          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP  294 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  294 (513)
                      +||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44444555555555555555555554444444

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.29  E-value=1.5e-06  Score=50.77  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010292          474 KTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV  506 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  506 (513)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            466777777777777777777777777777665

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.27  E-value=0.00055  Score=70.07  Aligned_cols=183  Identities=7%  Similarity=-0.059  Sum_probs=138.2

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      .+.+...+-.|..+..+.|+.++|..+++...+..+.+......+...+.+.+++++|+..+++....  -+-+....+.
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence            45578899999999999999999999999999987778889999999999999999999999999864  2445567788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  311 (513)
                      +..++.+.|++++|..+|++....+. -+..++..+-.++-..|+.++|...|+...+. ..+....|+..+.-      
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~------  231 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVD------  231 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHH------
Confidence            88899999999999999999997432 24788888999999999999999999998763 12445566655433      


Q ss_pred             hHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHhc
Q 010292          312 LPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~  344 (513)
                      +..-...++++.-.+    ......+...+|..|.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            233344555554332    222333445555555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.27  E-value=4.6e-05  Score=65.51  Aligned_cols=93  Identities=5%  Similarity=0.016  Sum_probs=45.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhcCCcccHhhHHHHHHHHH
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY-FRCNA--VDKLANFVKRAESAGWRLCRSLYHSKMVMYA  449 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  449 (513)
                      +...|...|++++|...|++..+.  .|.+..++..+..++ ...|+  .++|.+++++..+.... +...+..+...+.
T Consensus        79 Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~  155 (198)
T PRK10370         79 LGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAF  155 (198)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH
Confidence            445555555555555555555542  233344444444432 34344  35555555555544422 3444444555555


Q ss_pred             hcCCHHHHHHHHHHHHhCC
Q 010292          450 SQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~~  468 (513)
                      +.|++++|+..|+++.+..
T Consensus       156 ~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        156 MQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HcCCHHHHHHHHHHHHhhC
Confidence            5555555555555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.26  E-value=0.00065  Score=69.51  Aligned_cols=179  Identities=9%  Similarity=-0.028  Sum_probs=134.9

Q ss_pred             chhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ++.....-+..-.+..+.|..+++...+.    .|-+......+..++.+.+++++|+..+++.....+.+....+.+..
T Consensus        87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         87 LFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            33333344444467889999999988764    23456667888999999999999999999999988889999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010292          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (513)
                      ++.+.|++++|.++|+++...  ..-+..++..+..++-+.|+.++|...|++..+.- .+....|+..+.      ++.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~  233 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLN  233 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHH
Confidence            999999999999999999963  23347899999999999999999999999998642 245566666553      345


Q ss_pred             HHHHHHHHHHcCC----CCCCHHHHHHHHHHHHhcC
Q 010292          279 KVEEIYQMMKAGP----VMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       279 ~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~g  310 (513)
                      .-..+++.+.-++    ......+...+|.-+.+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (694)
T PRK15179        234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR  269 (694)
T ss_pred             HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence            5566677765543    3333455556666665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.24  E-value=7.9e-05  Score=64.09  Aligned_cols=135  Identities=16%  Similarity=-0.030  Sum_probs=116.6

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      .+-|....+..+....+.|++..|...|.+.....++|...|+.+.-+|.+.|+.++|..-|.+..+-  ..-+...+|.
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nN  173 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANN  173 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhh
Confidence            44577777889999999999999999999999988889999999999999999999999999999874  2334567888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      |...+.-.|+.+.|..++......+. -|..+-..+.-.....|++++|.++...-..
T Consensus       174 lgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         174 LGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            99999999999999999999987654 3777777788888999999999998766544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.24  E-value=9.6e-05  Score=59.98  Aligned_cols=90  Identities=11%  Similarity=-0.177  Sum_probs=36.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|++++|...|+.....  -+.+...|..+..++.+.|++++|...|++..+... .+...+..+..++.+.|+
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence            33334444444444444444321  122333444444444444444444444444443321 233344444444444444


Q ss_pred             HHHHHHHHHHHHc
Q 010292          277 WGKVEEIYQMMKA  289 (513)
Q Consensus       277 ~~~a~~~~~~m~~  289 (513)
                      +++|...|+....
T Consensus       108 ~~eAi~~~~~Al~  120 (144)
T PRK15359        108 PGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.20  E-value=9.5e-05  Score=59.52  Aligned_cols=95  Identities=12%  Similarity=-0.047  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      ....+...+...|++++|.+.|+.+...  .+.+...|..+...+.+.|++++|...+++..+.+. .+...+..+...+
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~   95 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence            3333444444444444444444444332  122333444444444444444444444444433321 1333333344444


Q ss_pred             HHccCHHHHHHHHHHHHc
Q 010292          272 MTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~  289 (513)
                      ...|++++|.+.|+...+
T Consensus        96 ~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        96 LALGEPESALKALDLAIE  113 (135)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            444444444444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.20  E-value=9.9e-05  Score=59.91  Aligned_cols=97  Identities=9%  Similarity=-0.126  Sum_probs=86.5

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+...|++++|...|+......+.+...|..+...+.+.|++++|+..|+.....  .+.+...+..+..++.
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~  103 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence            45567778899999999999999999988779999999999999999999999999999963  3557789999999999


Q ss_pred             hcCChhHHHHHHHHHHHCC
Q 010292          238 RLLLVDHMEAAFQEIKDSN  256 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g  256 (513)
                      ..|+.++|+..|+...+..
T Consensus       104 ~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999998754

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.17  E-value=0.00091  Score=67.96  Aligned_cols=110  Identities=6%  Similarity=-0.005  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      +.|+..+++.++  ...++..+||+|.-. ...|++.-+..-|-.-..... -...+|..+-..+.+..+++.|...|..
T Consensus       800 ~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~  875 (1238)
T KOG1127|consen  800 CTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSS  875 (1238)
T ss_pred             HHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHh
Confidence            456666666555  223345566655433 444555555544444333221 2344565566666777888888888888


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292          464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       464 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      .+..+ +.|...|--........|+.-++..+|..
T Consensus       876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            77765 44555565555555566666666665554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0012  Score=57.06  Aligned_cols=50  Identities=6%  Similarity=0.067  Sum_probs=23.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010292          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  431 (513)
                      .+.+..|.-+|++|-++  .+++..+.+....++...|++++|..+++....
T Consensus       186 gek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             chhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            34455555555554442  122333444444444455555555555554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0017  Score=56.19  Aligned_cols=251  Identities=10%  Similarity=0.040  Sum_probs=135.6

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010292          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH  244 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~  244 (513)
                      -+.-.|++..++..-+...... .++..-..+-++|...|.+...   ..+++.  |-.|.......+.......++.+.
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~---~~eI~~--~~~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIV---ISEIKE--GKATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccc---cccccc--ccCChHHHHHHHHHHhhCcchhHH
Confidence            3344566666555444433321 1333444455666666665433   333432  224444555545454444555444


Q ss_pred             HHH-HHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          245 MEA-AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       245 A~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      -+. +.+.+......-+......-...|+..|++++|++......      +......=...+.+..+++-|.+.++.|.
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq  164 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ  164 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333 34444443333333333333456778888888888776621      33334444455667777888888888887


Q ss_pred             hccCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCcccc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010292          324 HHVDGKEFPLIRAMICAYSKC-SVTDRIKKIEALMRLIPEKEYRPW-LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT  401 (513)
Q Consensus       324 ~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (513)
                      +.   .+..+.+-|..++.+. +.-+++..++-+|+++.++-...+ +-+-+..++...|++++|..++++.+.+.... 
T Consensus       165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-  240 (299)
T KOG3081|consen  165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-  240 (299)
T ss_pred             cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-
Confidence            74   2455566666666542 112346677777777777544444 21124455666788888888888887754433 


Q ss_pred             hHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhc
Q 010292          402 TVRIMRCIVSSYFRCNAV-DKLANFVKRAESA  432 (513)
Q Consensus       402 ~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~  432 (513)
                       +.++..++-.-...|.. +...+.+..++..
T Consensus       241 -petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  241 -PETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             -HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence             34444455444444543 3344555555543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.14  E-value=0.0048  Score=58.74  Aligned_cols=210  Identities=17%  Similarity=0.121  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010292          172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYN---GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA  247 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  247 (513)
                      .+++..+++.....-.. +.-.|..+..---..   .+.+...++++++.....+.|+. +|..+|+...+..-++.|..
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~  387 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK  387 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH
Confidence            45666666665543222 444444443321111   23777888888888765556664 78888999999999999999


Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          248 AFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       248 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      +|.+..+.+..+ ++.+++++|..||. ++.+-|.++|+.=.+ .|  -+..-...-+.-+...|+-..+..+|++....
T Consensus       388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            999999988777 89999999998876 688999999987443 33  23344456677778889999999999999998


Q ss_pred             cCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHH
Q 010292          326 VDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       326 ~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~  385 (513)
                      +..++  ...|..+++--..-|++..+.++.+.....-+.+..  ......+++-|.-.+.+..
T Consensus       465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c  528 (656)
T KOG1914|consen  465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC  528 (656)
T ss_pred             cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence            66665  468999999999999998877775544333331111  1112245666665554433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.13  E-value=0.00042  Score=65.03  Aligned_cols=161  Identities=15%  Similarity=0.041  Sum_probs=103.0

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 010292          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNT  231 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~  231 (513)
                      .|+...+...+........-..+..++.+-.+.+. ...-|..- ..+...|++++|+..++.+.+.   .||.. -+..
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~  345 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRGG-LAAQYGRA-LQTYLAGQYDEALKLLQPLIAA---QPDNPYYLEL  345 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCccc-hHHHHHHH-HHHHHhcccchHHHHHHHHHHh---CCCCHHHHHH
Confidence            35556666666655444444444444433333111 22233333 3445678888888888888764   45444 4445


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      ....+.+.++.++|.+.++.+...  .|+ ...+-.+-.+|.+.|++.+|+.+++...... +-|...|..|.++|...|
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g  422 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG  422 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence            567788888888888888888765  354 4455556678888888888888888776653 346778888888888888


Q ss_pred             ChHHHHHHHHH
Q 010292          311 NLPRMEKIYEL  321 (513)
Q Consensus       311 ~~~~a~~~~~~  321 (513)
                      +..++.....+
T Consensus       423 ~~~~a~~A~AE  433 (484)
T COG4783         423 NRAEALLARAE  433 (484)
T ss_pred             chHHHHHHHHH
Confidence            87777665544

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.13  E-value=5.4e-05  Score=56.06  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=49.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHH
Q 010292          194 NALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLL--------VDHMEAAFQEIKDSNLSPNVFTY  264 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~g~~p~~~~~  264 (513)
                      ...|..+...+++.....+|+.+++. |+ .|+..+|+.++.+.++..-        +-..+.++++|...+++|+..+|
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34455555667777777777777764 77 7777777777777665532        23344555666655666666666


Q ss_pred             HHHHHHHHH
Q 010292          265 NYLIAGYMT  273 (513)
Q Consensus       265 ~~li~~~~~  273 (513)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            666555543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0046  Score=53.16  Aligned_cols=190  Identities=11%  Similarity=0.000  Sum_probs=133.6

Q ss_pred             CChHHHHHHHHHHHHcCCCC-CCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010292          132 SRPRLALEVLNWRRRQAGYG-TPMTKEE-YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC  209 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A  209 (513)
                      +++++.++++..+......| ..++..+ |..++-+....|+.+.|..+++.+..+-+.+...--.-.-.+-..|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            46777778777776655555 4455543 456666777889999999999998876543333222222334556899999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +++++.+..+  -+-|.++|--=+-..-..|.--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++|.-
T Consensus       106 ~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  106 IEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            9999999975  3566777766666666667777888777777654 446999999999999999999999999999887


Q ss_pred             CCCCCCHH-HHHHHHHHHHh---cCChHHHHHHHHHHHhcc
Q 010292          290 GPVMPDTN-TYLLLLRGYAH---SGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       290 ~g~~p~~~-t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~  326 (513)
                        +.|-.. .+..+...+.-   ..+++.+.++|.+..+..
T Consensus       183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence              456443 33444444433   336777888888887753

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.10  E-value=6.9e-05  Score=71.00  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=102.8

Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010292          140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--K-TIGTYNALLGAYMYNGLSDKCQSLFRDL  216 (513)
Q Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m  216 (513)
                      ++..|.+.-..+.+-+......+++.+....+++.+.+++-+.....-  . -..+.+++|+.|.+.|..++++++++.=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            334443332333455777778888888888888889888888876522  1 2456678999999999999999999887


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292          217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       217 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .. +|+-||..++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus       130 ~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            76 5999999999999999999999999999998888777666777777777766665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.09  E-value=6.2e-05  Score=55.72  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHcCCCCCCHHHH
Q 010292          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPNVFTYNYLIAGYMTAWM--------WGKVEEIYQMMKAGPVMPDTNTY  299 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~t~  299 (513)
                      -...|..|...+++.....+|+.++..|+ .|++.+|+.++.+.++..-        .-+.+.+|+.|...+++|+..||
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34556666666888888888888888888 8888888888887776432        23456677888888888888888


Q ss_pred             HHHHHHHHh
Q 010292          300 LLLLRGYAH  308 (513)
Q Consensus       300 ~~ll~~~~~  308 (513)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            888777654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.06  E-value=0.00017  Score=57.99  Aligned_cols=107  Identities=10%  Similarity=-0.109  Sum_probs=89.2

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +......+...+.+.|++++|.+.|+.....++.+...|..+...+.+.|++++|..+|+...+.  .+.+..++..+..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~   93 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAE   93 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence            44556677788889999999999999998877768899999999999999999999999998763  3556788888889


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN  265 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  265 (513)
                      .+...|+++.|...|+...+..  |+...+.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~  122 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEIC--GENPEYS  122 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence            9999999999999999988753  5544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.05  E-value=4.1e-06  Score=47.59  Aligned_cols=29  Identities=31%  Similarity=0.525  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      +||.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            34555555555555555555555554444

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.05  E-value=0.0056  Score=61.86  Aligned_cols=138  Identities=13%  Similarity=0.117  Sum_probs=95.4

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010292          198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW  275 (513)
Q Consensus       198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  275 (513)
                      -.....+++.+|+....++.++   .||. .|..+++++  .+.|..++|..+++.....+.. |..|...+-.+|...|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~   91 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG   91 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence            3445677888888888888876   4554 344444443  5778888888888887766654 8888888888888888


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010292          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK  343 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (513)
                      +.++|..+|+...+.  -|+..-...+..+|.+.+++.+-.++=-++.+. .+.+...+-+++..+..
T Consensus        92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq  156 (932)
T KOG2053|consen   92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ  156 (932)
T ss_pred             hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence            888888888888773  477777778888888888776644444344332 33345555555555443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.04  E-value=7.8e-05  Score=70.65  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +......++..+....+.+.+..++.+.+.... ...-..|..++|+.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            777888888888888889999999998886411 1112235579999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010292          268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS  309 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  309 (513)
                      |+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999998877777888888888888776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.03  E-value=0.00012  Score=61.50  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  311 (513)
                      -+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus       119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            35567777777777777777777777777765554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.03  E-value=0.00028  Score=66.68  Aligned_cols=120  Identities=15%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .|+..+...++++.|+++|+++.+.   .|+.  ...++..+...++-.+|.+++++..+... -|......-...+.+.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence            3334444444455555555554432   2332  22244444444444445555444443221 2333344444444455


Q ss_pred             cCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010292          275 WMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      ++++.|+++.+++.+  ..|+ -.+|..|..+|...|+++.|+..++.+
T Consensus       248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            555555555555544  2333 235555555555555555555555443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.03  E-value=0.02  Score=57.16  Aligned_cols=325  Identities=11%  Similarity=0.019  Sum_probs=200.8

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc-ccCCHHHHHHHHHHHHh--ccCC---CHhHHHHHHHHHHHc----
Q 010292          134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG-RINNVDLAADLFAEAAN--KHLK---TIGTYNALLGAYMYN----  203 (513)
Q Consensus       134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~--~~~~---~~~~~~~li~~~~~~----  203 (513)
                      ...|+.+++.-...  ...++|...+-..-..|. +.+.+++++++-.+...  .+..   ....|..+.-+|...    
T Consensus       373 ~s~Av~ll~~~~~~--~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a  450 (799)
T KOG4162|consen  373 DSKAVNLLRESLKK--SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA  450 (799)
T ss_pred             chHHHHHHHhhccc--ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence            33455555533221  112445555555555554 44777777777766665  2221   345555555555432    


Q ss_pred             -------CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          204 -------GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       204 -------g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                             ....+++..+++..+..+-.|++..|-++-  |+..++++.|.....+..+.+-.-+...|..|.-.+...++
T Consensus       451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr  528 (799)
T KOG4162|consen  451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR  528 (799)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence                   225677888888876545556555555444  55667899999999999887666788899999888888999


Q ss_pred             HHHHHHHHHHHHc-CCC------------------CCCHHHHHHHHHHHHhc---------C--------------ChHH
Q 010292          277 WGKVEEIYQMMKA-GPV------------------MPDTNTYLLLLRGYAHS---------G--------------NLPR  314 (513)
Q Consensus       277 ~~~a~~~~~~m~~-~g~------------------~p~~~t~~~ll~~~~~~---------g--------------~~~~  314 (513)
                      +.+|+.+.+.... .|.                  .--..|+..++...-..         |              +..+
T Consensus       529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~  608 (799)
T KOG4162|consen  529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD  608 (799)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence            9999998877544 221                  00123333333333200         0              1111


Q ss_pred             HHHHHHHH--------HhccC-----------CCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010292          315 MEKIYELV--------KHHVD-----------GKE------FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL  369 (513)
Q Consensus       315 a~~~~~~~--------~~~~~-----------~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  369 (513)
                      +.+....+        +..+.           .|+      ...|......+.+.++.+++..++.....+..  ..++.
T Consensus       609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~--l~~~~  686 (799)
T KOG4162|consen  609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP--LSASV  686 (799)
T ss_pred             cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch--hhHHH
Confidence            11111110        00110           111      11333444556666666666555444444332  22333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH--HHHHHHhcCCcccHhhHHHHHHH
Q 010292          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN--FVKRAESAGWRLCRSLYHSKMVM  447 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~m~~~~~~~~~~~~~~li~~  447 (513)
                      +......+...|++++|.+.|.....  ..|..+....++...+...|+..-|..  ++.++.+.+.. +...|-.+...
T Consensus       687 ~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v  763 (799)
T KOG4162|consen  687 YYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEV  763 (799)
T ss_pred             HHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            33455667778999999999988777  445566678899999999998888888  99999988754 78899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 010292          448 YASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       448 ~~~~g~~~~A~~~~~~m~~~  467 (513)
                      +-+.|+.++|.+.|.-..+.
T Consensus       764 ~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  764 FKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHccchHHHHHHHHHHHhh
Confidence            99999999999999877654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.02  E-value=0.0098  Score=53.46  Aligned_cols=257  Identities=8%  Similarity=-0.054  Sum_probs=150.7

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHH---HHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----H---------
Q 010292          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNAL---LGAYMYNGLSDKCQSLFRDLKKEANISPSIV----T---------  228 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----~---------  228 (513)
                      .|...|+...|+.=++...+..+.   .+.+-   ...+.+.|.+++|..=|+...+.   .|+..    .         
T Consensus        81 ~yLAmGksk~al~Dl~rVlelKpD---F~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e  154 (504)
T KOG0624|consen   81 VYLAMGKSKAALQDLSRVLELKPD---FMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQE  154 (504)
T ss_pred             HHhhhcCCccchhhHHHHHhcCcc---HHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHH
Confidence            455566666666666666554221   11111   23456677777777777777653   23211    1         


Q ss_pred             ---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292          229 ---YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       229 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                         ....+..+.-.|+...|+.....+++..+ -|...|..-..+|...|++..|+.=++...+.. .-+..++--+-..
T Consensus       155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L  232 (504)
T KOG0624|consen  155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQL  232 (504)
T ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence               12234445566788888888888887643 477777777888888888888877665554422 2245666666777


Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH-------------HHHhcCChhHHHHHHHHHHhCCCCCc--ccchH
Q 010292          306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC-------------AYSKCSVTDRIKKIEALMRLIPEKEY--RPWLN  370 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~  370 (513)
                      +...|+.+.++....+..+.  .||-..+-..-.             .....+++-+..+..+...+..+...  .-...
T Consensus       233 ~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~  310 (504)
T KOG0624|consen  233 LYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF  310 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence            77788888887777777664  344332211111             11122333333333222222222111  11112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  433 (513)
                      ..+-.++...+++.+|++...+.+.  ..|.+..++.--..+|.-..++|.|+.=|+...+.+
T Consensus       311 r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  311 RVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             heeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            2355566677888888888888777  556677777777778888888888888888776554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.00  E-value=7.6e-06  Score=46.46  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292          475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            455666666666666666666666655553

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.97  E-value=0.00048  Score=56.10  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=66.1

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYN  230 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~  230 (513)
                      .|..++..+ ..++...+.+.++.+...+..+   ....-.+...+...|++++|...|+..... .  ||.    ....
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l   89 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHH
Confidence            444444444 3566666666666666654433   222233345566666666666666666653 2  332    1233


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      .|...+...|++++|+..++......  .....+......|.+.|+.++|...|+.
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34555666666666666665533222  2334455555666666666666666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0054  Score=52.75  Aligned_cols=51  Identities=8%  Similarity=-0.015  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHHHHHc---CC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          275 WMWGKVEEIYQMMKA---GP-VMPDTN-TYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       275 g~~~~a~~~~~~m~~---~g-~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      .+.+++.+++.+|+.   .| ..++.. .|..++-+....|+.+.|..+++.+...
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~   81 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR   81 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            355666666666553   23 334432 2334444445556666666666655554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.95  E-value=0.00038  Score=65.76  Aligned_cols=125  Identities=10%  Similarity=0.007  Sum_probs=93.4

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292          159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      -..|+..+...++++.|.++|+++.+..   +.....+++.+...++..+|.+++++..+.  .+-|......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence            3455666667788888888888888764   345556777777788888888888888864  34466667777777888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .++.+.|+.+.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+-.
T Consensus       247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            8888888888888887532 2445888888888888888888888877654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.91  E-value=0.00057  Score=55.68  Aligned_cols=126  Identities=17%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHH
Q 010292          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--FTY  264 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~  264 (513)
                      ..|..++..+ ..++...+.+.++.+....   |+.    ...-.+...+...|++++|...|+........++.  ...
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            3455555555 4788888888888888752   332    23334557778888888888888888876533322  234


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010292          265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      -.|...+...|++++|+..++......  .....+......+.+.|+.++|...|+..
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            445677778888888888886644333  23445667778888888888888887653

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.87  E-value=0.00037  Score=58.58  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHhc-----ccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010292          155 TKEEYTKGIKFAG-----RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       155 ~~~~~~~ll~~~~-----~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      |..+|..+++.|.     +.|.++-....+..|.+-|+. |..+|+.|+..+=+ |.+- -..+|+.+-..         
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h---------  114 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH---------  114 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence            6666666666664     235556666666666666664 66666666665554 2221 12222222211         


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                               .-.+.+-|+.++++|...|+.||..++..+++.+.+.+.
T Consensus       115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                     012356788999999999999999999999999877654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.84  E-value=0.051  Score=55.94  Aligned_cols=180  Identities=8%  Similarity=-0.071  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                      .|...++..++. ...+..+|+.|--. ...|++.-+...+-.-....+.....|.|  +...+.++.+++.|...|...
T Consensus       801 ~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N--lgvL~l~n~d~E~A~~af~~~  876 (1238)
T KOG1127|consen  801 TAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN--LGVLVLENQDFEHAEPAFSSV  876 (1238)
T ss_pred             HHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec--cceeEEecccHHHhhHHHHhh
Confidence            444555544443 12234444444333 44454444444433333344445555543  444566777888888888776


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 010292          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA----ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN---  466 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---  466 (513)
                      ..  ..|.+...|-.....-...|+.-+...+|..-    ...|-.++..-|-+...-....|+.++-+...+.+-.   
T Consensus       877 qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~  954 (1238)
T KOG1127|consen  877 QS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL  954 (1238)
T ss_pred             hh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence            55  44555555554444445567777777777652    1233344444444444445566666655444333322   


Q ss_pred             ------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          467 ------YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       467 ------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                            .+.+-+...|.+.....-+.+.++.|.++..+.
T Consensus       955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                  244556667777777777777777777766654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.79  E-value=0.00068  Score=61.91  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA-YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      .+|..+++..-+.+..+.|..+|.+..+.+.-+..+|-..... |...++.+.|..+|+...+.  +..+...|..-++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence            3567777777777778888888888775443344444444444 22345666688888887765  45566777777777


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +.+.|+.+.|..+|++.... + +..    ..|...+..=.+.|+.+.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888888888887754 2 333    3777777777777777777777777766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.78  E-value=0.0012  Score=51.64  Aligned_cols=96  Identities=17%  Similarity=0.058  Sum_probs=43.4

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010292          160 TKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISV  235 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~  235 (513)
                      -.+...+.+.|++++|.+.|+.+......+   ...+..+...+.+.|++++|...|+.+.....-.+ ....+..+..+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            334444445555555555555554433211   23344445555555555555555555543210000 12334444444


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 010292          236 FGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~  255 (513)
                      +.+.|+.++|...++++.+.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHH
Confidence            45555555555555555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.76  E-value=0.00054  Score=50.70  Aligned_cols=93  Identities=14%  Similarity=0.110  Sum_probs=43.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010292          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT  273 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (513)
                      ..+...+...|++++|...|++..+.  .+.+...+..+...+...|++++|...|+....... .+..++..+...+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence            33444444455555555555554432  122223444444555555555555555555444322 122344445555555


Q ss_pred             ccCHHHHHHHHHHHHc
Q 010292          274 AWMWGKVEEIYQMMKA  289 (513)
Q Consensus       274 ~g~~~~a~~~~~~m~~  289 (513)
                      .|++++|...++...+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            5555555555555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.70  E-value=0.046  Score=51.30  Aligned_cols=373  Identities=10%  Similarity=0.033  Sum_probs=178.3

Q ss_pred             HHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh--cccCCHHHHHHHHHHHHhc--cC--C--CHhHH-
Q 010292          124 VELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFA--GRINNVDLAADLFAEAANK--HL--K--TIGTY-  193 (513)
Q Consensus       124 ~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~--~~--~--~~~~~-  193 (513)
                      +.++.++ ..+.+.-.......++..  |..    .|-.+..++  -+.+.+++|.+.+..-..+  +.  +  +...+ 
T Consensus        50 grilnAffl~nld~Me~~l~~l~~~~--~~s----~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~  123 (549)
T PF07079_consen   50 GRILNAFFLNNLDLMEKQLMELRQQF--GKS----AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ  123 (549)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHhc--CCc----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence            3444444 345555555555555532  222    344444443  4678888888877765543  21  1  32221 


Q ss_pred             --------HHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---------------hhHHHH
Q 010292          194 --------NALLGAYMYNGLSDKCQSLFRDLKKEA---NISPSIVTYNTLISVFGRLLL---------------VDHMEA  247 (513)
Q Consensus       194 --------~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~p~~~~~~~li~~~~~~g~---------------~~~A~~  247 (513)
                              +..+..+...|++.++..++++|..+.   ...-|..+||.++-.+++.=-               ++.+.-
T Consensus       124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilf  203 (549)
T PF07079_consen  124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILF  203 (549)
T ss_pred             HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence                    445667788889999988888887641   122577888876665554311               122222


Q ss_pred             HHHHHHHC------CCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 010292          248 AFQEIKDS------NLSPNVFTYNYLIAGYMTAW--MWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       248 ~~~~m~~~------g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      ..++|...      .+.|.......++....-..  +..--.++++.-...-+.|+. -....|+..+..  +.+++..+
T Consensus       204 Y~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~  281 (549)
T PF07079_consen  204 YLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF  281 (549)
T ss_pred             HHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence            22222211      12233333333332222111  111112222222222334442 122222222222  33333333


Q ss_pred             HHHHHhccCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------------------------
Q 010292          319 YELVKHHVDGK----EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE------------------------------  364 (513)
Q Consensus       319 ~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------------------------  364 (513)
                      -+.+....+.+    =..++..++....+.++...|.+.+.++.-..+..                              
T Consensus       282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y  361 (549)
T PF07079_consen  282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY  361 (549)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence            33222211100    12345555555555555555555555554443322                              


Q ss_pred             -----------cccch-HHHHH---HHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHH----HHHHhc---CcHHH
Q 010292          365 -----------YRPWL-NVLLI---RVYAKEDC-LEEMEKSINDAFEHKTSVTTVRIMRCIV----SSYFRC---NAVDK  421 (513)
Q Consensus       365 -----------~~~~~-~~~li---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---~~~~~  421 (513)
                                 +...- ...|+   .-+-+.|. -++|+++++.+++  ..+.+...-|.+.    .+|...   ..+..
T Consensus       362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r  439 (549)
T PF07079_consen  362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPR  439 (549)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence                       11110 00011   11222333 5667777766665  2233333222222    222221   12223


Q ss_pred             HHHHHHHHHhcCCcccH----hhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010292          422 LANFVKRAESAGWRLCR----SLYHSKMV--MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV  495 (513)
Q Consensus       422 a~~~~~~m~~~~~~~~~----~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  495 (513)
                      -..+-+-+.+.|+.|-.    ..-|.|-+  .+...|++.++.-.-.-+.+  +.|++.+|..+.-+.....++++|..+
T Consensus       440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~  517 (549)
T PF07079_consen  440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY  517 (549)
T ss_pred             HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33333344566766532    33344433  33468888888765554444  679999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCC
Q 010292          496 LGLMCKNGYDVPVNAFPS  513 (513)
Q Consensus       496 ~~~m~~~g~~p~~~t~~S  513 (513)
                      +.+     ++|+..+++|
T Consensus       518 l~~-----LP~n~~~~ds  530 (549)
T PF07079_consen  518 LQK-----LPPNERMRDS  530 (549)
T ss_pred             HHh-----CCCchhhHHH
Confidence            985     3556555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.63  E-value=0.0047  Score=56.70  Aligned_cols=200  Identities=12%  Similarity=0.084  Sum_probs=107.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292          268 IAGYMTAWMWGKVEEIYQMMKA----GPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                      ...|-..|++++|.+.|.+...    .|-.. -...|......|.+. ++++|.+.++               ..+..|.
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~A~~~y~  105 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------KAIEIYR  105 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------HHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------HHHHHHH
Confidence            3455666777777776666432    11000 122233333333222 5555555444               3445677


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcC
Q 010292          343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-DCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCN  417 (513)
Q Consensus       343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~  417 (513)
                      ..|++..+-++..                -+...|-.. |++++|.+.|++..+    .+....-..++..+...+.+.|
T Consensus       106 ~~G~~~~aA~~~~----------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~  169 (282)
T PF14938_consen  106 EAGRFSQAAKCLK----------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG  169 (282)
T ss_dssp             HCT-HHHHHHHHH----------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred             hcCcHHHHHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence            7777776655533                356666666 788888888776554    2221222345667778888899


Q ss_pred             cHHHHHHHHHHHHhcCC-----cccHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhc-
Q 010292          418 AVDKLANFVKRAESAGW-----RLCRS-LYHSKMVMYASQRRVEEMESVLKEMENYK--IDCS--KKTFWIMYYAYATC-  486 (513)
Q Consensus       418 ~~~~a~~~~~~m~~~~~-----~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~-  486 (513)
                      ++++|.++|++......     +.+.. .|-..+-++...|++-.|.+.+++.....  +..+  ......|+.+|-.. 
T Consensus       170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D  249 (282)
T PF14938_consen  170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD  249 (282)
T ss_dssp             -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            99999999988765332     22222 22233445566788999999999887653  3222  34455666666542 


Q ss_pred             -CCHhHHHHHHHHH
Q 010292          487 -GQRRKVNQVLGLM  499 (513)
Q Consensus       487 -g~~~~A~~~~~~m  499 (513)
                       ..++.|+.-|+.+
T Consensus       250 ~e~f~~av~~~d~~  263 (282)
T PF14938_consen  250 VEAFTEAVAEYDSI  263 (282)
T ss_dssp             CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHHccc
Confidence             2345555444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.62  E-value=0.00017  Score=52.38  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHH
Q 010292          381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV  460 (513)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  460 (513)
                      |+++.|+.+++++.+.....++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            455555555555555332111222233345555555555555555544 111111 112222334444555555555555


Q ss_pred             HH
Q 010292          461 LK  462 (513)
Q Consensus       461 ~~  462 (513)
                      ++
T Consensus        81 l~   82 (84)
T PF12895_consen   81 LE   82 (84)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.61  E-value=0.0013  Score=48.62  Aligned_cols=91  Identities=12%  Similarity=0.142  Sum_probs=47.8

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       409 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      +...+...|++++|..+++.+.+.... +...+..+...+...|++++|.+.++.....+ +.+..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence            344444555555555555555433211 22334445555555566666666666555443 2233455556666666666


Q ss_pred             HhHHHHHHHHHHH
Q 010292          489 RRKVNQVLGLMCK  501 (513)
Q Consensus       489 ~~~A~~~~~~m~~  501 (513)
                      ++.|...+++..+
T Consensus        84 ~~~a~~~~~~~~~   96 (100)
T cd00189          84 YEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHHHHHc
Confidence            6666666655543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.61  E-value=0.0019  Score=59.02  Aligned_cols=127  Identities=10%  Similarity=0.099  Sum_probs=78.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS-YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      .++...-+.+..+.|..+|.+..+.+......  |-..... |...++.+.|..+|+...+. +.-+...|...++.+.+
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence            45666666667777777877776543333333  3333333 33356666688888876643 33456667777777777


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          451 QRRVEEMESVLKEMENYKIDCSK---KTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .|+.+.|..+|+..... +.++.   ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus        83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888877754 33222   47777777777788888777777777653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.60  E-value=0.0015  Score=59.87  Aligned_cols=132  Identities=12%  Similarity=0.027  Sum_probs=85.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcCCc-ccHhhHH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE----SAGWR-LCRSLYH  442 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~  442 (513)
                      .|...|.-.|+++.|+..-+.-++    -|.....-..+..+.+++.-.|+++.|.+.|+...    +.|-+ .......
T Consensus       200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY  279 (639)
T KOG1130|consen  200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY  279 (639)
T ss_pred             ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            355555566788888866543222    23333334457778888888999999999888643    33321 1223344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          443 SKMVMYASQRRVEEMESVLKEMEN----Y-KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      +|...|.-..+++.|+.++.+-..    . +..-....|++|..+|...|..++|+.+.+.-.+..
T Consensus       280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            566677777788888887764322    1 122356789999999999999999998877665443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.60  E-value=0.0037  Score=48.76  Aligned_cols=96  Identities=11%  Similarity=-0.076  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYN  265 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~  265 (513)
                      ++..+...+.+.|++++|.+.|+.+...   .|+    ...+..+..++.+.|+++.|...|+++......  ....++.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKK---YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            4555566666677777777777777653   122    234555666666777777777777766653211  1134455


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          266 YLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      .+..++.+.|+.++|.+.++++.+.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHH
Confidence            5556666666666776666666654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.59  E-value=0.0039  Score=61.91  Aligned_cols=64  Identities=13%  Similarity=-0.014  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      +...|.++.-.+...|++++|...+++....  .|+...|..+...+...|+.++|.+.+++..+.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4455665555555567777777777776663  356666777777777777777777777666654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.56  E-value=0.0003  Score=51.06  Aligned_cols=81  Identities=9%  Similarity=0.076  Sum_probs=61.0

Q ss_pred             cCcHHHHHHHHHHHHhcCCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010292          416 CNAVDKLANFVKRAESAGWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ  494 (513)
Q Consensus       416 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  494 (513)
                      .|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|+.+++. ...+ ..+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            57899999999999876542 3455566688999999999999999988 3332 1233555567899999999999999


Q ss_pred             HHHH
Q 010292          495 VLGL  498 (513)
Q Consensus       495 ~~~~  498 (513)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9886

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.51  E-value=0.0055  Score=49.27  Aligned_cols=92  Identities=7%  Similarity=-0.155  Sum_probs=71.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      +..-+...|++++|.++|+-...  ..|.+..-|..|.-+|-..|++++|++.|........ -|...+-.+..++...|
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence            66667788899999998888777  4455566677788888888899999999888877664 36667777788888889


Q ss_pred             CHHHHHHHHHHHHhC
Q 010292          453 RVEEMESVLKEMENY  467 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~  467 (513)
                      +.+.|.+.|+.....
T Consensus       118 ~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        118 NVCYAIKALKAVVRI  132 (157)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999998888876653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.51  E-value=0.00042  Score=47.89  Aligned_cols=62  Identities=23%  Similarity=0.343  Sum_probs=39.9

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      +.|++++|.++|+.+....+.+...+..+..+|.+.|++++|.++++.+...   .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence            4567777777777776665556666667777777777777777777777654   4554444433

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.49  E-value=0.0044  Score=52.13  Aligned_cols=84  Identities=13%  Similarity=0.052  Sum_probs=49.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      .+...+...|++++|...|++.+.....++ ....+..+...+.+.|++++|...+.+..+.... +...+..+...|..
T Consensus        40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~  118 (172)
T PRK02603         40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYHK  118 (172)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence            455566667777777777777665433222 2345666666777777777777777766654322 34445555555655


Q ss_pred             cCCHHH
Q 010292          451 QRRVEE  456 (513)
Q Consensus       451 ~g~~~~  456 (513)
                      .|+...
T Consensus       119 ~g~~~~  124 (172)
T PRK02603        119 RGEKAE  124 (172)
T ss_pred             cCChHh
Confidence            555433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.45  E-value=0.17  Score=51.64  Aligned_cols=199  Identities=12%  Similarity=-0.001  Sum_probs=132.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 010292          122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM  201 (513)
Q Consensus       122 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  201 (513)
                      .+.++...-.+++++|..+++.....+.    -|..+...+-..|...++.++|..+|++.....+. ......+..+|+
T Consensus        47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayv  121 (932)
T KOG2053|consen   47 VLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYV  121 (932)
T ss_pred             HHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence            3344444446788889888876655432    28889999999999999999999999999886554 777777888899


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 010292          202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----------LVDHMEAAFQEIKDSN-LSPNVFTYNYLIAG  270 (513)
Q Consensus       202 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~  270 (513)
                      +.+.+.+-.++=-+|-+.  .+-+...+=++++.....-          -+.-|.+.++.+.+.+ -.-+..-.-.-...
T Consensus       122 R~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i  199 (932)
T KOG2053|consen  122 REKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI  199 (932)
T ss_pred             HHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence            988887766666666653  3334455555555544321          1345777788777654 21122222222334


Q ss_pred             HHHccCHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010292          271 YMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD  327 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  327 (513)
                      +-..|.+++|+.++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus       200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            456788999999983 344433333455555667777888888888888888877654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.43  E-value=0.014  Score=49.11  Aligned_cols=86  Identities=9%  Similarity=-0.057  Sum_probs=43.8

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-S-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      ...|..+...+...|++++|...|++..+. .-.+ + ...+..+...+.+.|++++|...+++..+... -+...+..+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  112 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence            444555555555666666666666655532 1111 1 23455555556666666666666665554321 133444444


Q ss_pred             HHHHHHccCH
Q 010292          268 IAGYMTAWMW  277 (513)
Q Consensus       268 i~~~~~~g~~  277 (513)
                      ...+...|+.
T Consensus       113 g~~~~~~g~~  122 (172)
T PRK02603        113 AVIYHKRGEK  122 (172)
T ss_pred             HHHHHHcCCh
Confidence            4555555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.42  E-value=0.0049  Score=58.48  Aligned_cols=100  Identities=16%  Similarity=0.037  Sum_probs=72.9

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..+...|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..+++....  -+.+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence            44556788888888888888776667778888888888888888888888888753  2335667777778888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHH
Q 010292          244 HMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +|+..|++..+..  |+......+
T Consensus        88 eA~~~~~~al~l~--P~~~~~~~~  109 (356)
T PLN03088         88 TAKAALEKGASLA--PGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHH
Confidence            8888888877643  444333333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.35  E-value=0.0075  Score=57.26  Aligned_cols=104  Identities=8%  Similarity=-0.053  Sum_probs=83.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|++++|++.|++..+.  -+-+...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence            45567889999999999999874  244667888889999999999999999999988653 367788888999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                      +++|...|++..+.  .|+......++..
T Consensus        86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~  112 (356)
T PLN03088         86 YQTAKAALEKGASL--APGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            99999999999873  4665444444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.34  E-value=0.0011  Score=45.22  Aligned_cols=57  Identities=12%  Similarity=0.077  Sum_probs=39.3

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      ...+.+.|++++|.+.|+++.+..+.+...|..+..++...|++++|...|+++.+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345566777777777777777766556777777777777777777777777777653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.30  E-value=0.0086  Score=50.16  Aligned_cols=96  Identities=5%  Similarity=-0.192  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY  480 (513)
Q Consensus       403 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  480 (513)
                      ...|..+...+...|++++|...+++.......+  ...+|..+...|...|++++|+..++...... +....++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            4455666667777788888888888776543222  23456677777888888888888888777653 33345555666


Q ss_pred             HHHH-------hcCCHhHHHHHHHHH
Q 010292          481 YAYA-------TCGQRRKVNQVLGLM  499 (513)
Q Consensus       481 ~~~~-------~~g~~~~A~~~~~~m  499 (513)
                      ..+.       ..|+++.|...+++.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            6665       777777665555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.28  E-value=0.049  Score=50.02  Aligned_cols=114  Identities=17%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh----cCCc-ccHhhHHHHHH
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES----AGWR-LCRSLYHSKMV  446 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~  446 (513)
                      .+..|...|++..|-+.                +..+...|... |++++|.+.|.+..+    .+.. --...+..+..
T Consensus       100 A~~~y~~~G~~~~aA~~----------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~  163 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKC----------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD  163 (282)
T ss_dssp             HHHHHHHCT-HHHHHHH----------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence            55666666666665544                44455567777 899999999887643    2311 11344677788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          447 MYASQRRVEEMESVLKEMENYKID-----CSKK-TFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       447 ~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+.+.|++++|.++|++....-..     .+.. .|-..+-++...|+...|.+.+++....
T Consensus       164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            899999999999999998765322     2222 3344555777889999999999988754

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.28  E-value=0.0076  Score=50.49  Aligned_cols=96  Identities=6%  Similarity=-0.193  Sum_probs=56.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      ....|..+...+...|++++|+..|++......-.+ ...+|..+...+...|++++|+..+++...... ....+++.+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence            355666677777777788888887777764311111 124666777777777777777777777765422 233445555


Q ss_pred             HHHHH-------HccCHHHHHHHHH
Q 010292          268 IAGYM-------TAWMWGKVEEIYQ  285 (513)
Q Consensus       268 i~~~~-------~~g~~~~a~~~~~  285 (513)
                      ...+.       +.|++++|...++
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHH
Confidence            55555       4455554444333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.26  E-value=0.13  Score=45.90  Aligned_cols=177  Identities=13%  Similarity=0.050  Sum_probs=99.9

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTY---NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .....+.+.|++++|.+.|+.+....+.+...-   -.+..++.+.+++++|...|++..+...-.|+. -|...+.+.+
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~  115 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHh
Confidence            344445678999999999999988655443333   455677888999999999999998764333433 3333333332


Q ss_pred             h--cC---------------C---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHH
Q 010292          238 R--LL---------------L---VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN  297 (513)
Q Consensus       238 ~--~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  297 (513)
                      .  .+               |   ...|...|+++++.               |-...-..+|...+..+...   .- .
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---la-~  176 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---LA-K  176 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---HH-H
Confidence            1  11               1   12344444444433               22222234444433333220   00 0


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          298 TYLLLLRGYAHSGNLPRMEKIYELVKHH--VDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      ---.+.+-|.+.|++..|..-++.+.+.  +.+........++.+|.+.|..+.+..+..++
T Consensus       177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1124556677778888888777777764  22223344556666777777776666655544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.21  E-value=0.016  Score=46.66  Aligned_cols=96  Identities=8%  Similarity=0.009  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      ..-.+...+...|++++|..+|+-+...... +..-|-.|..++-..|++++|+..|......+ +-|+..+-.+..++.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L  114 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            3445666778899999999999988766543 55667778888889999999999999999887 568899999999999


Q ss_pred             hcCCHhHHHHHHHHHHHC
Q 010292          485 TCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       485 ~~g~~~~A~~~~~~m~~~  502 (513)
                      ..|+.+.|.+.|+..+..
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999977654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.034  Score=49.54  Aligned_cols=127  Identities=12%  Similarity=0.085  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHH
Q 010292          173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR---LLLVDHMEAAF  249 (513)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~  249 (513)
                      +....-++.-...++.|...|-.|..+|...|+.+.|..-|.+..+..|  +|...+..+..++..   ..+-.++..+|
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            3334444444555555889999999999999999999999998887543  444444444444332   23456788888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      +++..... -|+.+-..|-..+...|++.+|...++.|.+..  |....+..+|.
T Consensus       217 ~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         217 RQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            88887543 366667777778888888888888888888743  33334444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.02  E-value=0.28  Score=45.52  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=61.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      .|.-+...|+...|.++-++     ...++...|-.-+.+++..++|++-.++-..    .  -++..|..++.+|.+.|
T Consensus       183 Ti~~li~~~~~k~A~kl~k~-----Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  183 TIRKLIEMGQEKQAEKLKKE-----FKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYG  251 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHH-----cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCC
Confidence            35555666666666665443     2344566666777777777777766655332    1  13456777777777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010292          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV  495 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  495 (513)
                      +..+|..++..+.          +..-+..|.+.|++.+|.+.
T Consensus       252 ~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  252 NKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             CHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence            7777777766621          23455666666666666544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.02  E-value=0.078  Score=52.83  Aligned_cols=59  Identities=7%  Similarity=-0.110  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      ..|..+.-.....|++++|...+++..+..  |+...|..+...+...|+.++|.+.++..
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444333344455555555555555433  34445555555555555555444444333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.01  E-value=0.0043  Score=42.29  Aligned_cols=56  Identities=5%  Similarity=-0.002  Sum_probs=34.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ...+.+.|++++|...|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345566666666666666666655 33555666666666666666666666666654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.99  E-value=0.013  Score=51.92  Aligned_cols=101  Identities=14%  Similarity=0.082  Sum_probs=74.4

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010292          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  456 (513)
                      +.+.+++++|+..|.+.++  ..|.+...|..=..+|++.|.++.|.+=-+........ ...+|..|-.+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            4566788888888888887  55666767777788888888888888777776654422 35678888888888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          457 MESVLKEMENYKIDCSKKTFWIMYYA  482 (513)
Q Consensus       457 A~~~~~~m~~~~~~p~~~~~~~li~~  482 (513)
                      |++.|++..+  +.|+..+|..=+..
T Consensus       168 A~~aykKaLe--ldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence            8888888776  44666666654443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.94  E-value=0.0047  Score=42.68  Aligned_cols=63  Identities=19%  Similarity=0.122  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKK  218 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  218 (513)
                      ...|..+...+.+.|++++|+..|++..+.++.+...|..+..+|...| ++++|++.|++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3445555555555555555555555555554445555555555555555 45555555555443

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.92  E-value=0.0057  Score=42.11  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=37.5

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292          201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      ...|++++|+++|+++...  .+-|...+..+..+|.+.|++++|..+++++...  .|+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            3556677777777776654  2335556666667777777777777777766654  2444444433

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.92  E-value=0.027  Score=50.66  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTY  229 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~  229 (513)
                      ..|...+..+.+.|++++|...|+.+.+..+.+   ...+-.+...|...|++++|...|+.+.+.+   |+    ...+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl  220 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHH
Confidence            344454544455566666666666666654432   3455566666666666666666666666431   22    2333


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292          230 NTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      -.+...+...|+.+.|..+|+++.+.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33444555566666666666666553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.91  E-value=0.0051  Score=42.50  Aligned_cols=63  Identities=13%  Similarity=0.132  Sum_probs=37.3

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 010292          438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG-QRRKVNQVLGLMCK  501 (513)
Q Consensus       438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  501 (513)
                      ...|..+...+...|++++|+..|++..+.+ +-+...|..+..+|...| ++++|++.+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3445555556666666666666666666554 335555666666666666 46666666665543

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.88  E-value=0.057  Score=52.86  Aligned_cols=262  Identities=11%  Similarity=0.064  Sum_probs=140.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHcCC
Q 010292          223 SPSIVTYNTLISVFGRLLLVDHMEAA---------FQEIKDSNLSPNVFTYNYLIAGYMTAWMW--GKVEEIYQMMKAGP  291 (513)
Q Consensus       223 ~p~~~~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g  291 (513)
                      .|..+.+.+=+-.|...|.+++|.++         ++.+-..  ..+...+++.=.+|.+-.+.  -+...-+++|+++|
T Consensus       553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg  630 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG  630 (1081)
T ss_pred             ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence            44455566666667777777776543         2222211  12344455566677665543  34555567788888


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010292          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD----GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP  367 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  367 (513)
                      -.|+...   +...|+-.|++.+|-++|.+--...-    -.|...| .+.+-|.+.|..++-....+.-.+....--.|
T Consensus       631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP  706 (1081)
T KOG1538|consen  631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP  706 (1081)
T ss_pred             CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence            8888643   44556677888888888865322110    0111111 12333444444332222211111100001111


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHH-----H-H--hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010292          368 WLNVLLIRVYAKEDCLEEMEKSIND-----A-F--EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS  439 (513)
Q Consensus       368 ~~~~~li~~~~~~~~~~~a~~~~~~-----~-~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  439 (513)
                      .   +....+...|+.++|..+.-+     | .  .+.....+..+...+..-+-+...+..|-++|..|-+.       
T Consensus       707 k---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------  776 (1081)
T KOG1538|consen  707 K---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------  776 (1081)
T ss_pred             H---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence            1   233344445555555544211     0 0  11122223334444444455566667777787776432       


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292          440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK-----------KTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                        ..+++.....++|.+|..+-+...+.  .||.           .-|.-.=++|.++|+..+|..+++++....+
T Consensus       777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav  848 (1081)
T KOG1538|consen  777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV  848 (1081)
T ss_pred             --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence              35677888899999999998877652  3332           2244455789999999999999998866544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.88  E-value=0.37  Score=44.59  Aligned_cols=284  Identities=11%  Similarity=0.046  Sum_probs=171.8

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhccCCCHhH----HHHHHHHH
Q 010292          127 MKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT----YNALLGAY  200 (513)
Q Consensus       127 l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~----~~~li~~~  200 (513)
                      |.+-+++...|..+-..-.+.    +.-|....-.++.+-.  -.|+.+.|.+-|+.|..    +.++    ...|.-.-
T Consensus        93 iAagAGda~lARkmt~~~~~l----lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleA  164 (531)
T COG3898          93 IAAGAGDASLARKMTARASKL----LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEA  164 (531)
T ss_pred             hhhccCchHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHH
Confidence            333356777776655544322    3345555555655543  46899999999999886    3333    23333334


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHH---
Q 010292          201 MYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVF--TYNYLIAGYMT---  273 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---  273 (513)
                      -+.|..+.|...-++.-..   .|. ...+...+...|..|+|+.|+++++.-++.. +.+++.  .-..|+.+-..   
T Consensus       165 qr~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         165 QRLGAREAARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HhcccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            5678888888888777643   344 3577888888999999999999988776542 344432  22333333221   


Q ss_pred             ccCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh--hHH
Q 010292          274 AWMWGKVEEIYQMMKAGPVMPDTN-TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT--DRI  350 (513)
Q Consensus       274 ~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a  350 (513)
                      .-+...|...-.+..+  +.||-. .-..-..++.+.|++.++-.+++.+-+....|++.    .+..+.+.|+.  +.+
T Consensus       242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRl  315 (531)
T COG3898         242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRL  315 (531)
T ss_pred             cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHH
Confidence            2244455555444443  456632 33445677889999999999999998876655543    23345566653  232


Q ss_pred             HHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Q 010292          351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-CNAVDKLANFVKRA  429 (513)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m  429 (513)
                      .. .+.+..|.+++..+..  .+..+-...|++..|..--+....  . .|....|..|.+.-.. .|+-.++.+.+.+.
T Consensus       316 kR-a~~L~slk~nnaes~~--~va~aAlda~e~~~ARa~Aeaa~r--~-~pres~~lLlAdIeeAetGDqg~vR~wlAqa  389 (531)
T COG3898         316 KR-AKKLESLKPNNAESSL--AVAEAALDAGEFSAARAKAEAAAR--E-APRESAYLLLADIEEAETGDQGKVRQWLAQA  389 (531)
T ss_pred             HH-HHHHHhcCccchHHHH--HHHHHHHhccchHHHHHHHHHHhh--h-CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence            22 2345666666665553  466777777888777655444333  2 2234556555544333 48888888888877


Q ss_pred             HhcC
Q 010292          430 ESAG  433 (513)
Q Consensus       430 ~~~~  433 (513)
                      .+.-
T Consensus       390 v~AP  393 (531)
T COG3898         390 VKAP  393 (531)
T ss_pred             hcCC
Confidence            6543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.85  E-value=0.036  Score=43.40  Aligned_cols=83  Identities=16%  Similarity=0.072  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc----------------CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKH----------------LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      |..++..+|.++++.|+++....+++..-.-+                .|+..+..+++.+|+.+|++..|+++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            45567778888888888887777776542111                02445555555555555555555555555555


Q ss_pred             hCCCCCCHHHHHHHHHHHH
Q 010292          219 EANISPSIVTYNTLISVFG  237 (513)
Q Consensus       219 ~~g~~p~~~~~~~li~~~~  237 (513)
                      .++++-+..+|..|+.-+.
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHH
Confidence            5555555555555555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.81  E-value=0.34  Score=43.21  Aligned_cols=56  Identities=11%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          444 KMVMYASQRRVEEMESVLKEMENY--KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       444 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      +...|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|.++...+
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            445566667777777777666653  22334445556667777777777776665544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.81  E-value=0.019  Score=46.79  Aligned_cols=69  Identities=13%  Similarity=0.122  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----HCCCCCCCC
Q 010292          440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-----KNGYDVPVN  509 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~  509 (513)
                      ....++..+...|++++|..+.+.+...+ +.|...|..+|.+|...|+...|.++|+++.     +.|+.|+..
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            35566777888999999999999999877 6788899999999999999999999998763     458888753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.80  E-value=0.099  Score=40.50  Aligned_cols=103  Identities=16%  Similarity=0.041  Sum_probs=58.4

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 010292          163 IKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISV  235 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~  235 (513)
                      -.++-..|+.++|+.+|++....|...   ...+-.+...+...|++++|+.+|++...+   .|+    ......+..+
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHH
Confidence            344555677777777777777766542   334445556666777777777777776654   233    1122223345


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM  272 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (513)
                      +...|+.++|.+.+-....    ++...|.--|..|.
T Consensus        85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            5666777777766655443    33334554444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.80  E-value=0.0093  Score=48.61  Aligned_cols=71  Identities=17%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVT  228 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~  228 (513)
                      +...++..+...|++++|..+.+.+....+-+...|..+|.+|...|+..+|++.|+.+.+    +.|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            4455566666677777777777777766655677777777777777777777777766532    2366666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.32  Score=42.46  Aligned_cols=128  Identities=11%  Similarity=-0.023  Sum_probs=61.1

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 010292          160 TKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI-----  233 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li-----  233 (513)
                      +.++..+.-.|.+.-...++.+..+.+.+ ++..-..|++.-.+.|+.+.|...|+...+.. -+.|..+++.++     
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhh
Confidence            44455555555555556666665555544 55555555555566666666666666554431 122333332222     


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..|.-.+++..|...|++...... .|...-|.=.-+..-.|+..+|++..+.|++
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             hheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            223333445555555555544322 1333333333333334455555555555554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.77  E-value=0.46  Score=44.15  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010292          333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS  412 (513)
Q Consensus       333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  412 (513)
                      +.+..|.-+...|+...|.++.+.|   .-++-.-|.  ..+.+|+..++|++..++...    ...|  . -|..++.+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~--lki~aLa~~~~w~eL~~fa~s----kKsP--I-GyepFv~~  246 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWW--LKIKALAENKDWDELEKFAKS----KKSP--I-GYEPFVEA  246 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHH--HHHHHHHhcCCHHHHHHHHhC----CCCC--C-ChHHHHHH
Confidence            3455566677788777666655444   333333342  689999999999998876432    1222  2 37888999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       413 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      |.+.|+..+|..++.++          .+..-+..|.++|++.+|.+.--+..
T Consensus       247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            99999999999998872          23456788999999999988765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.76  E-value=0.012  Score=51.49  Aligned_cols=116  Identities=12%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             CHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010292          189 TIGTYNALLGAYMYN-----GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT  263 (513)
Q Consensus       189 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  263 (513)
                      +..+|-+.+..+...     +.++-.-..++.|.+ +|+.-|..+|+.||+.+-+..                +.|... 
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk----------------fiP~nv-  127 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK----------------FIPQNV-  127 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence            677777777777653     455555666677775 588888888888887764432                112211 


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 010292          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL-PRMEKIYELVKH  324 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~  324 (513)
                      +..+.-.|-+  +-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-+
T Consensus       128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            1111111222  2345789999999999999999999999999888753 334444444433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.70  E-value=0.14  Score=39.66  Aligned_cols=88  Identities=16%  Similarity=0.021  Sum_probs=46.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 010292          198 GAYMYNGLSDKCQSLFRDLKKEANISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN----VFTYNYLIAGY  271 (513)
Q Consensus       198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~  271 (513)
                      .++-..|+.++|+.+|++.... |+...  ...+-.+...+...|++++|..+|++.....  |+    ......+.-++
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence            4445566666666666666653 54433  2244455566666666666666666665432  22    11112222344


Q ss_pred             HHccCHHHHHHHHHHHH
Q 010292          272 MTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~  288 (513)
                      ...|+.++|++.+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            55666666666554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.68  E-value=0.013  Score=40.90  Aligned_cols=56  Identities=5%  Similarity=-0.045  Sum_probs=40.7

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      .+|.+.+++++|.++++.+...++.+...|.....++.+.|++++|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45667777777777777777766667777777777777777777777777777754

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.41  Score=41.84  Aligned_cols=132  Identities=7%  Similarity=-0.050  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA--  269 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--  269 (513)
                      +.+.++..+.-.|.+.-....+++..+. .-+.+......|++.-.+.||.+.|...|++..+..-+.|..+++.++.  
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            4556666666667777777777777764 3345566666677777777777777777776664433344444444432  


Q ss_pred             ---HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          270 ---GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       270 ---~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                         .|.-.+++..|...|.+.....- -|....|.-.-+..-.|+..+|.+.++.|.+.
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               33445566667777766655431 13334443333334456677777777777664

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.57  E-value=0.75  Score=45.91  Aligned_cols=241  Identities=11%  Similarity=0.067  Sum_probs=138.3

Q ss_pred             CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010292          188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP  259 (513)
Q Consensus       188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  259 (513)
                      |.+..|..|.......-.++-|...|-+...-.|++.-.        ..-.+=|.+  --|.+++|++++-+|..+.   
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD---  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD---  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence            456788888877777667777777776554322332111        111111222  2478888888888776543   


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010292          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM  337 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  337 (513)
                            ..|..+.+.|++-.+.++++.=-. +.  +--...|+.+...++....+++|.+.+..-...         ...
T Consensus       765 ------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~  828 (1189)
T KOG2041|consen  765 ------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ  828 (1189)
T ss_pred             ------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence                  246667788888887777654211 11  112457788888888888888888887654331         234


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010292          338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN  417 (513)
Q Consensus       338 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  417 (513)
                      +++|.+...+++.+   ...+.++++...--   .|...+...|..++|.+.|-+-     ..|     .+.+..|...+
T Consensus       829 ~ecly~le~f~~LE---~la~~Lpe~s~llp---~~a~mf~svGMC~qAV~a~Lr~-----s~p-----kaAv~tCv~Ln  892 (1189)
T KOG2041|consen  829 IECLYRLELFGELE---VLARTLPEDSELLP---VMADMFTSVGMCDQAVEAYLRR-----SLP-----KAAVHTCVELN  892 (1189)
T ss_pred             HHHHHHHHhhhhHH---HHHHhcCcccchHH---HHHHHHHhhchHHHHHHHHHhc-----cCc-----HHHHHHHHHHH
Confidence            55666555554333   23334444332222   4778888888888888776331     111     13466788888


Q ss_pred             cHHHHHHHHHHHHhcCCc-----------ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          418 AVDKLANFVKRAESAGWR-----------LCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       418 ~~~~a~~~~~~m~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ++.+|.++-++..-..+.           -+..+ .--|..+-+.|+.-+|.+++.+|.+
T Consensus       893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence            888887776643211110           00011 1124456677777777777777754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.56  E-value=0.98  Score=45.16  Aligned_cols=49  Identities=6%  Similarity=-0.075  Sum_probs=30.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHhH
Q 010292          443 SKMVMYASQRRVEEMESVLKEMEN-YKIDCSKKTFWIMYYAYATCGQRRK  491 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~  491 (513)
                      .|..--...|.++.|.+.--.+.+ .++-|....|..|.-+.+....+..
T Consensus      1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGt 1075 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGT 1075 (1189)
T ss_pred             HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhh
Confidence            333444567888888876554443 2466778888877766555444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.55  E-value=0.051  Score=50.29  Aligned_cols=264  Identities=10%  Similarity=-0.030  Sum_probs=136.4

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHH--HH-hCCCCC-CHHHHHHHHHHHH
Q 010292          166 AGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDL--KK-EANISP-SIVTYNTLISVFG  237 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m--~~-~~g~~p-~~~~~~~li~~~~  237 (513)
                      +++.|+....+.+|+...+-|-.|    ..+|..|..+|.-.+++++|+++...=  .. ..|-+. ...+...|.+.+-
T Consensus        27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK  106 (639)
T KOG1130|consen   27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK  106 (639)
T ss_pred             HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence            577777777778887777766544    234666667777777777777764311  00 001110 1112222333333


Q ss_pred             hcCChhHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHH----H
Q 010292          238 RLLLVDHMEAAFQE----IKDSNL-SPNVFTYNYLIAGYMTAWM--------------------WGKVEEIYQMM----K  288 (513)
Q Consensus       238 ~~g~~~~A~~~~~~----m~~~g~-~p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m----~  288 (513)
                      -.|.+++|...-.+    ..+.|- ......+-.+...|...|+                    ++.|.++|.+=    .
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~  186 (639)
T KOG1130|consen  107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE  186 (639)
T ss_pred             hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444322111    011110 0112222234444444332                    23344444331    1


Q ss_pred             cCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hccCCC-cHHHHHHHHHHHHhcCChhHHHHHHH----HHH
Q 010292          289 AGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVK----HHVDGK-EFPLIRAMICAYSKCSVTDRIKKIEA----LMR  358 (513)
Q Consensus       289 ~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~----~~~  358 (513)
                      +.|-. .-...|..|-+.|.-.|+++.|+..++.-.    +.|-.. ....+..+-+++.-.|+++.|.+-++    +..
T Consensus       187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi  266 (639)
T KOG1130|consen  187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI  266 (639)
T ss_pred             HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence            11111 123456666666677788888887776422    222211 23456677777777888877766543    233


Q ss_pred             hCCCCCcccch-HHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292          359 LIPEKEYRPWL-NVLLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       359 ~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  430 (513)
                      ++..+.+.... | .|...|.-...+++|+.++.+-+.    .+...-....+-+|..+|...|..++|+.+.+.-.
T Consensus       267 elg~r~vEAQscY-SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  267 ELGNRTVEAQSCY-SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HhcchhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44444333221 3 477777777788888887765332    11222233445578888888888888888776543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.54  E-value=0.039  Score=48.95  Aligned_cols=101  Identities=14%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010292          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (513)
                      -+.+.+++++|+..|.+..+-  .+-|.+-|..-..+|++.|.++.|++-.+..+.... --..+|..|-.+|...|+++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence            345667777777777777752  233455566666777777777777776666655321 12456777777777777777


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292          279 KVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      +|++.|++.++  +.|+-.+|-.=++
T Consensus       167 ~A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  167 EAIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence            77777777766  5676666554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.53  E-value=0.055  Score=48.64  Aligned_cols=97  Identities=13%  Similarity=-0.008  Sum_probs=61.1

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFT  263 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~  263 (513)
                      ...|+..+..+.+.|++++|+..|+.+.+.   .|+.    ..+-.+..+|...|++++|...|+.+.+.-..  .....
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            345666665556678888888888888765   3543    35666777777777777777777777653211  11233


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          264 YNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +-.+...+...|+.++|.++|++..+
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33344555566677777777766665

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.087  Score=48.90  Aligned_cols=158  Identities=9%  Similarity=0.013  Sum_probs=96.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH------
Q 010292          340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR--VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS------  411 (513)
Q Consensus       340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~------  411 (513)
                      ++.-.|+.+.+...--...++...+...    ..+.  ++--.++.+.|...|.+.+..+....+..+......      
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~a----l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEA----LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHH----HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence            4555677777766654444554444322    2332  233457788888888887775544333332222222      


Q ss_pred             ----HHHhcCcHHHHHHHHHHHHhc---CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          412 ----SYFRCNAVDKLANFVKRAESA---GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       412 ----~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                          -..+.|++..|.+.+.+.+..   +.+++...|.-...+..+.|+.++|+.--++....+ .-=...|..-..++.
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l  332 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL  332 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence                334678999999999987643   345566667666777788999999998888777543 101112222234455


Q ss_pred             hcCCHhHHHHHHHHHHHC
Q 010292          485 TCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       485 ~~g~~~~A~~~~~~m~~~  502 (513)
                      -.++|++|.+-+++..+.
T Consensus       333 ~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            677888888888876554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.44  E-value=0.82  Score=43.02  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=23.3

Q ss_pred             cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292          365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      ..-|..+.++.++.-.|++++|.+..++|.+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            33455566777888888888888888887764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.18  Score=45.04  Aligned_cols=114  Identities=17%  Similarity=0.028  Sum_probs=92.7

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCCHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      .|-|...|-.|-.+|.+.|+++.|..-|.+..+...+|...+..+..++....   ...++..+|+++.+.  -+-|+.+
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira  229 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA  229 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence            45599999999999999999999999999999987788888888887766543   367899999999964  3455667


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|...+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            7777888999999999999999999864  33444555554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=1.2  Score=44.92  Aligned_cols=326  Identities=9%  Similarity=0.026  Sum_probs=183.0

Q ss_pred             cCCCCCCCCHHHHHHH-----HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010292          147 QAGYGTPMTKEEYTKG-----IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN  221 (513)
Q Consensus       147 ~~~~g~~~~~~~~~~l-----l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g  221 (513)
                      ....|++.+..-|..+     |.-+...+.+..|.++-..+...-..+..+|.....-+.+..+.. -.++++.+.++.+
T Consensus       423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls  501 (829)
T KOG2280|consen  423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLS  501 (829)
T ss_pred             ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhc
Confidence            3458899988888754     666778889999999888775432223466777777777664321 1233333333322


Q ss_pred             C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-----
Q 010292          222 I-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL----SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-----  291 (513)
Q Consensus       222 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----  291 (513)
                      . --...+|..+..-.-.+|+.+.|..+++.=...+-    -.+..-+...+.-+.+.|+.+-...++-.|.++-     
T Consensus       502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l  581 (829)
T KOG2280|consen  502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL  581 (829)
T ss_pred             ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            2 12345777777777788999999888764332211    0122335556666777888887777776665421     


Q ss_pred             -----CCC-CHHHHHHHHH--------HHHhcCChHHHHHHHH--HHH----hccCCCcHHHHHHHHHHHHhcCChhH--
Q 010292          292 -----VMP-DTNTYLLLLR--------GYAHSGNLPRMEKIYE--LVK----HHVDGKEFPLIRAMICAYSKCSVTDR--  349 (513)
Q Consensus       292 -----~~p-~~~t~~~ll~--------~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~li~~~~~~g~~~~--  349 (513)
                           ..| ....|.-+++        .+.+.++-.++...|.  ...    ..+..|+..   ...+.+.+......  
T Consensus       582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~  658 (829)
T KOG2280|consen  582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEA  658 (829)
T ss_pred             HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHH
Confidence                 011 1122222221        1111222222222111  100    012223322   23333443332111  


Q ss_pred             -----HHHHHHHHHhCCCC-C--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH
Q 010292          350 -----IKKIEALMRLIPEK-E--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK  421 (513)
Q Consensus       350 -----a~~~~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  421 (513)
                           -.+.+++.+.+... +  .....-.--+.-+...|+..+|.++-.+     ...++...|-.=+.+++..+++++
T Consensus       659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~-----FkipdKr~~wLk~~aLa~~~kwee  733 (829)
T KOG2280|consen  659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD-----FKIPDKRLWWLKLTALADIKKWEE  733 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh-----cCCcchhhHHHHHHHHHhhhhHHH
Confidence                 11122222222211 1  1111111245666778888998887554     344566667667888999999998


Q ss_pred             HHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010292          422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       422 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                      -+++-+.++      .+.-|..++.+|.+.|+.++|.+++.+...         +.-...+|.+.|++.+|.++-
T Consensus       734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence            777766543      245677889999999999999999876542         115678888889988887654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.40  E-value=0.061  Score=42.11  Aligned_cols=47  Identities=9%  Similarity=0.179  Sum_probs=21.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCCcHHHHHHHHH
Q 010292          293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIRAMIC  339 (513)
Q Consensus       293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~  339 (513)
                      .|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|++
T Consensus        49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            34444444555555444555555544444333 233334444444444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.40  E-value=0.88  Score=42.82  Aligned_cols=168  Identities=13%  Similarity=0.046  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc---CC-CHhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCCCHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKH---LK-TIGTYNALLGAYMY---NGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      +..+...++-.|-...+++..+++.+.+....   +. +...-....-++-+   .|+.++|++++..+... .-.++..
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d  218 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPD  218 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChH
Confidence            44455566667888999999999999988752   11 33333344455666   78999999999885543 4567888


Q ss_pred             HHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HH---HHHHHH---H-HHHcC
Q 010292          228 TYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WG---KVEEIY---Q-MMKAG  290 (513)
Q Consensus       228 ~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~a~~~~---~-~m~~~  290 (513)
                      +|..+...|-..         ..++.|+..|.+--+.  .||.++=-.+...+...|. .+   +..++-   . ...++
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k  296 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK  296 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence            888877776321         1345566655554432  2333221111111112221 11   122222   1 11122


Q ss_pred             CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          291 PV---MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       291 g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      |.   ..|-.-+.+++.++.-.|+.+.|.+..+.|.+.
T Consensus       297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            21   234455555666666666666666666666654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.33  E-value=0.33  Score=39.05  Aligned_cols=43  Identities=9%  Similarity=0.060  Sum_probs=22.6

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN  203 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  203 (513)
                      .++..+.+.+.......+++.+...+..+...+|.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            4444444455555555555555554433455555555555544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.30  E-value=0.019  Score=40.10  Aligned_cols=55  Identities=15%  Similarity=0.091  Sum_probs=28.5

Q ss_pred             HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       412 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      .|.+.+++++|.++++.+...+.. +...+......+.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            445555555555555555544322 3444444555555555555555555555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.24  E-value=0.29  Score=48.23  Aligned_cols=79  Identities=11%  Similarity=0.095  Sum_probs=49.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh-----------HHHHHH
Q 010292          378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL-----------YHSKMV  446 (513)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-----------~~~li~  446 (513)
                      .+...+..|-++|.+|-.          ..++++.....+++++|..+-+..-+.  .||+..           |.-.-.
T Consensus       758 k~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqk  825 (1081)
T KOG1538|consen  758 KKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQK  825 (1081)
T ss_pred             hhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHH
Confidence            344556667777766532          234666677778888888777654321  222211           333446


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC
Q 010292          447 MYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       447 ~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      +|.+.|+-.+|..+++++....
T Consensus       826 AfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  826 AFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             HHHHhcchHHHHHHHHHhhhhh
Confidence            7888888889998888876643

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.15  E-value=0.051  Score=47.69  Aligned_cols=116  Identities=9%  Similarity=0.163  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010292          153 PMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      .-|..+|-..+..+..     .+.++-....+..|.+.|+. |..+|+.||..+-+..-.-.  .+|+..          
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~----------  131 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV----------  131 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH----------
Confidence            3488888888888753     46778888888899999985 99999998887755432211  112111          


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHH
Q 010292          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW-GKVEEIYQMMK  288 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~  288 (513)
                           .+ -|-  .+-+-++.++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-
T Consensus       132 -----F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  132 -----FL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             -----Hh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                 11 111  12244778888888888888888888888888776643 34444444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.12  E-value=0.8  Score=39.62  Aligned_cols=51  Identities=10%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKL  422 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a  422 (513)
                      .+...|.+.|.+..|..-++.+++.-... ........++.+|.+.|..+.+
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            36777888888888888888888753222 2223455667777777776644

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.08  E-value=0.39  Score=37.16  Aligned_cols=121  Identities=10%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C----------------CcccHhhHH
Q 010292          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-G----------------WRLCRSLYH  442 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----------------~~~~~~~~~  442 (513)
                      .|.+++..++..+.....    +..-+|-+|--....-+-+-..+.++.+-+. .                ...+...+.
T Consensus        15 dG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD   90 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVD   90 (161)
T ss_dssp             TT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHH
T ss_pred             hchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHH
Confidence            466666677776665532    1222444443333333333344444433110 0                012334456


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292          443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  505 (513)
                      ..++.+..+|+-+.-.++++++...+ .+++...-.+..+|.+-|+..++.+++.+.-+.|++
T Consensus        91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            67788889999999999999987644 788888999999999999999999999999999974

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.08  E-value=1.1  Score=41.04  Aligned_cols=130  Identities=14%  Similarity=0.235  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccC
Q 010292          206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGR--LL----LVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~  276 (513)
                      +++.+.+++.|.+. |+.-+..+|-+.......  ..    ....|..+|+.|++...   .++..++..|+..  ..++
T Consensus        78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            44556667777764 677776666553333322  22    24567777777776542   3455666666554  2223


Q ss_pred             H----HHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcC-C--hHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292          277 W----GKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSG-N--LPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       277 ~----~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~--~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      .    +.++++|+.+...|+..+ ..-+.+-+-+++... .  ...+.++++.+.+.|++.....|..+.
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence            2    456677777777776654 222222232332222 1  335677777777777777666655443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.05  E-value=0.093  Score=46.24  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNT  231 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~  231 (513)
                      ...|+.-+.. .+.|++..|...|....+..+.   ....+-.|...+...|++++|..+|..+.++++-.|-. ..+--
T Consensus       142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            4467777766 4667799999999999987764   46778889999999999999999999999875544444 67888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC
Q 010292          232 LISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      |..+..+.|+.+.|..+|+++.+.
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            888889999999999999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.03  E-value=0.36  Score=47.05  Aligned_cols=108  Identities=15%  Similarity=0.125  Sum_probs=57.2

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ....+.++..+-+.|..+.|+++-.+-..+             .....+.|+++.|.++-++.      .+...|..|..
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~  355 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGD  355 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHH
Confidence            334566666666666666666655443322             23344566666666554332      24556666666


Q ss_pred             HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ...+.|+++-|++.|++...         |..|+-.|.-.|+.+.-.++.+.....
T Consensus       356 ~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  356 EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            66666666666666665443         445555555566655555555554444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.93  E-value=0.78  Score=37.94  Aligned_cols=97  Identities=10%  Similarity=-0.009  Sum_probs=49.3

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCCcHHHHH
Q 010292          259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIR  335 (513)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~  335 (513)
                      |++..--.|..++.+.|+..+|...|++....-+--|......+.++....+++..|...++.+.+.   +-.||..  -
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--L  164 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--L  164 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--H
Confidence            4555555555555566666666666665555433445555555555555556666665555555442   1222222  2


Q ss_pred             HHHHHHHhcCChhHHHHHHHHH
Q 010292          336 AMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       336 ~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      .+...|...|...+|+.+++..
T Consensus       165 l~aR~laa~g~~a~Aesafe~a  186 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVA  186 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHH
Confidence            3334444455555555554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.93  E-value=0.021  Score=40.49  Aligned_cols=61  Identities=11%  Similarity=0.052  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc-cc-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          404 RIMRCIVSSYFRCNAVDKLANFVKRAESA----GWR-LC-RSLYHSKMVMYASQRRVEEMESVLKEM  464 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m  464 (513)
                      .+|+.+...|...|++++|++.+++..+.    |-. |+ ..+++.+...|...|++++|++++++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555555555666666666555554321    111 11 333444555555555555555555543

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.93  E-value=1.1  Score=39.42  Aligned_cols=183  Identities=17%  Similarity=0.149  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      ...|+..+.- .+.|++++|.+.|+.+..+.+-   ...+.-.++.++-+.+++++|+..+++..+..+-.||. -|..-
T Consensus        35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y  112 (254)
T COG4105          35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY  112 (254)
T ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence            3445544443 5778899999999988876652   45666677778888899999999999888776656665 34444


Q ss_pred             HHHHHhc-------CChhHHH---HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292          233 ISVFGRL-------LLVDHME---AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL  302 (513)
Q Consensus       233 i~~~~~~-------g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  302 (513)
                      |.+++.-       .|...+.   .-|++++++  -||.             .-...|..-.......    =..-=..+
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~I  173 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA----LAGHEMAI  173 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH----HHHHHHHH
Confidence            4444322       2223333   333333332  1221             1111111111111100    00000234


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010292          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLI  360 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~  360 (513)
                      .+-|.+.|.+..|..-++.|.+. .+.+.   ...-.+..+|.+.|-.+.|.++.+++..-
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            45566777777777777777665 22222   23344555666666666666666555543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.90  E-value=0.031  Score=39.63  Aligned_cols=61  Identities=21%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPD-TNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      +|+.+...|...|++++|+..|++..+.    |- .|+ ..++..+...+...|++++|++.+++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555555666666666655554421    11 122 4455566666666666666666665543

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.87  E-value=1.1  Score=42.48  Aligned_cols=132  Identities=14%  Similarity=0.149  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHH
Q 010292          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLR  304 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~  304 (513)
                      .+|...|+...+...++.|..+|-+..+.| +.+++..++++|..++. |+...|.++|+.=...  -||...| ...+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            456777888788888889999999988887 67888888998887765 6788888888764332  2454433 34566


Q ss_pred             HHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010292          305 GYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPE  362 (513)
Q Consensus       305 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  362 (513)
                      -+...++-+.|..+|+..++. +..+  ...|..+|+--...|++..+....+.|.+..+
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p  533 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP  533 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence            667788888888888865443 1112  45788888888888888777666666655433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.85  E-value=0.15  Score=48.53  Aligned_cols=68  Identities=15%  Similarity=0.004  Sum_probs=58.7

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      .+.+...++.+..+|.+.|++++|+..|++..+.++.+.   .+|..+..+|...|+.++|++.+++..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455788888999999999999999999999888776555   45999999999999999999999999863

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.84  E-value=0.054  Score=48.43  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=46.9

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVTYNTLI  233 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~~~~li  233 (513)
                      ++..+++.+...|+++.+.+.++++....+.+...|..+|.+|.+.|+...|+..|+.+.+    ..|+.|...+.....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            4455566666666666666666666665555666666666666666666666666666543    235555555544444


Q ss_pred             HH
Q 010292          234 SV  235 (513)
Q Consensus       234 ~~  235 (513)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            44

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.84  E-value=1.1  Score=38.80  Aligned_cols=57  Identities=11%  Similarity=0.094  Sum_probs=33.7

Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ..+.+.|++++|.+.|+.+....-  .--....-.+..++.+.|+++.|...++...+.
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344566777777777777765321  111344556667777777777777777776654

>PRK15331 chaperone protein SicA; Provisional

Probab=95.76  E-value=0.42  Score=38.87  Aligned_cols=91  Identities=7%  Similarity=-0.121  Sum_probs=64.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      ...-+-..|++++|..+|.-+..-+  +.+..-+..|..+|-..+++++|...|......+. -|+..+-....+|...|
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence            3444556788999999988777633  33455577788888888889999888887654443 23333445667788888


Q ss_pred             CHHHHHHHHHHHHh
Q 010292          453 RVEEMESVLKEMEN  466 (513)
Q Consensus       453 ~~~~A~~~~~~m~~  466 (513)
                      +.+.|...|+...+
T Consensus       120 ~~~~A~~~f~~a~~  133 (165)
T PRK15331        120 KAAKARQCFELVNE  133 (165)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999988888876

>PRK15331 chaperone protein SicA; Provisional

Probab=95.64  E-value=0.97  Score=36.85  Aligned_cols=90  Identities=9%  Similarity=0.031  Sum_probs=70.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC  382 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  382 (513)
                      ..-+...|++++|..+|.-+.-.+. -+...+..|..++-..++++.|...+...-.+...+..|..  .+..+|...|+
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l~l~~  120 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHHHhCC
Confidence            3344578999999999988776533 35566777888888888888888888877777777777764  37889999999


Q ss_pred             HHHHHHHHHHHHh
Q 010292          383 LEEMEKSINDAFE  395 (513)
Q Consensus       383 ~~~a~~~~~~~~~  395 (513)
                      .+.|...|...+.
T Consensus       121 ~~~A~~~f~~a~~  133 (165)
T PRK15331        121 AAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887776

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.60  E-value=0.37  Score=46.05  Aligned_cols=65  Identities=11%  Similarity=0.012  Sum_probs=58.3

Q ss_pred             CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292          188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      .+...|+.+..+|.+.|++++|+..|++..+.   .|+.    .+|..+..+|.+.|+.++|+..+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            37899999999999999999999999998864   6774    35899999999999999999999999874

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.54  E-value=2.1  Score=39.95  Aligned_cols=283  Identities=11%  Similarity=0.037  Sum_probs=145.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHccCHHH
Q 010292          204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG--RLLLVDHMEAAFQEIKDSNLSPNVFT--YNYLIAGYMTAWMWGK  279 (513)
Q Consensus       204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~  279 (513)
                      |+-..|.++-.+-.+.  +.-|......|+.+-.  -.|++++|.+-|+-|...   |....  ...|.-.--+.|+.+.
T Consensus        98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence            4445555444443321  2334444444443322  345566666666666541   22211  1122222234555555


Q ss_pred             HHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcHH--HHHHHHHHHHhc---CChhHHHH
Q 010292          280 VEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEFP--LIRAMICAYSKC---SVTDRIKK  352 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~~~~~---g~~~~a~~  352 (513)
                      |.++-+..-..  -|. ...+...+...|..|+++.|+++++.-... -+.++..  .-..|+.+-...   .+...+..
T Consensus       173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            55555554332  222 345555666666666666666666554432 1222221  111122111100   01111111


Q ss_pred             HHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Q 010292          353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-  431 (513)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-  431 (513)
                      .-..-.+ ..++..|-. ..-..++.+.|+..++-.+++.+.+....|.-   +  .+..+.+.|+.  +..-+++.++ 
T Consensus       251 ~A~~a~K-L~pdlvPaa-v~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---a--~lY~~ar~gdt--a~dRlkRa~~L  321 (531)
T COG3898         251 DALEANK-LAPDLVPAA-VVAARALFRDGNLRKGSKILETAWKAEPHPDI---A--LLYVRARSGDT--ALDRLKRAKKL  321 (531)
T ss_pred             HHHHHhh-cCCccchHH-HHHHHHHHhccchhhhhhHHHHHHhcCCChHH---H--HHHHHhcCCCc--HHHHHHHHHHH
Confidence            1111111 234555542 24567889999999999999999986555432   2  33345555653  3333333321 


Q ss_pred             cCCcc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCC
Q 010292          432 AGWRL-CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       432 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~  504 (513)
                      ...+| +.+.--.+..+-...|++..|..--+....  ..|....|..|.+.-... |+-.++..++-+..+.--
T Consensus       322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr  394 (531)
T COG3898         322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR  394 (531)
T ss_pred             HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence            11233 345555667777788888888776666654  468888898888887655 999999998887766533

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.52  E-value=1.2  Score=36.97  Aligned_cols=130  Identities=9%  Similarity=0.016  Sum_probs=87.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                      +-|++.--..|..++.+.|+..+|...|++....-+-.|....-.+.++....+++..+...++.+-+.....-.+...-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            45777777889999999999999999999988866666777777777888877877776666666655555444444333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN  424 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  424 (513)
                      .+...|...|+++.|+.-|+.....-+.+.-...|..+   +.+.|+.+++..
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~~ea~a  214 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcchhHHHH
Confidence            56667777777777777777766644433323233333   344555554443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=1.5  Score=38.10  Aligned_cols=205  Identities=9%  Similarity=0.087  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010292          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK  343 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (513)
                      |.---.+|....++++|...+.+..+. .+-+...|       -..+.++.|.-+.+++.+.  +--+..|+.-...|..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            344445566666777766655554421 11111111       1122344444455554442  1123345566667777


Q ss_pred             cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcH
Q 010292          344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAV  419 (513)
Q Consensus       344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~  419 (513)
                      +|..+-|-.+++...++                 ..+.+.++|+++|++...-    +...--...+..+-+.+.+...+
T Consensus       104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf  166 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF  166 (308)
T ss_pred             hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence            77776655554433322                 2234455555555543321    11111122345555566666666


Q ss_pred             HHHHHHHHHHHh----cCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHhH
Q 010292          420 DKLANFVKRAES----AGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENY---KIDCSKKTFWIMYYAYATCGQRRK  491 (513)
Q Consensus       420 ~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~  491 (513)
                      ++|-..+.+-..    ..--++ -..|-..|-.|.-..++..|.+.+++--+.   .-.-+..+...|+.+|- .|+.++
T Consensus       167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~  245 (308)
T KOG1585|consen  167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE  245 (308)
T ss_pred             hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence            665544433211    111111 122444555566677888888888774332   22335667777777774 466666


Q ss_pred             HHHHH
Q 010292          492 VNQVL  496 (513)
Q Consensus       492 A~~~~  496 (513)
                      +.+++
T Consensus       246 ~~kvl  250 (308)
T KOG1585|consen  246 IKKVL  250 (308)
T ss_pred             HHHHH
Confidence            65554

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.49  E-value=1  Score=36.14  Aligned_cols=127  Identities=11%  Similarity=0.099  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      ....++..+...+..+....+++.+... + ..+...+|.++..|++.+ .+.....++.      ..+......++..|
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c   79 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC   79 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence            3456777777778888888888888865 4 366778888888888764 3444444442      12334455577778


Q ss_pred             HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292          272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                      .+.+.++++.-++.++..         |...+..+... ++++.|.+++...      .+...|..++..+.
T Consensus        80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            888888888888877643         22233333333 6777777766541      24456666665554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=1.6  Score=39.15  Aligned_cols=46  Identities=4%  Similarity=-0.047  Sum_probs=25.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN  417 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  417 (513)
                      .+...+...|+.++|.+.+-.++++...-.+...-..|+..+.-.|
T Consensus       241 ~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         241 ALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            3566666777777777766666655433333333444555444444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.33  E-value=1  Score=35.01  Aligned_cols=60  Identities=13%  Similarity=0.233  Sum_probs=25.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  434 (513)
                      .+..+...|+-+.-.+++.++.+.+..  ++..+-.+..+|.+.|+..++.+++++.-+.|+
T Consensus        92 ALd~lv~~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   92 ALDILVKQGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            444445555555555555554432111  223344455555555555555555555544443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=2.1  Score=38.44  Aligned_cols=142  Identities=13%  Similarity=0.042  Sum_probs=88.0

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ......|++.+|..+|+........+...--.+..+|...|+.+.|..++..+..+. -.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence            345678888888888888887766677777788888888999999999988887541 1111122223344455555555


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcC
Q 010292          244 HMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g  310 (513)
                      +...+-.+.-..   | |...--.+-..+...|+.++|.+.+-.+...  |.. |...-..++..+.-.|
T Consensus       221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence            444444444432   4 5555556667777777777777765555442  333 4445555555555555

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.12  E-value=0.94  Score=35.03  Aligned_cols=92  Identities=15%  Similarity=0.089  Sum_probs=68.3

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCh
Q 010292          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--VTYNTLISVFGRLLLV  242 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~  242 (513)
                      +++..|+++.|++.|.+....-+.+...||.-.+++--.|+.++|++=+++..+..|-+--.  ..|.--...|...|+.
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            45778999999999998887655688899999999999999999999888887765533111  2333344556677888


Q ss_pred             hHHHHHHHHHHHCC
Q 010292          243 DHMEAAFQEIKDSN  256 (513)
Q Consensus       243 ~~A~~~~~~m~~~g  256 (513)
                      +.|..=|+..-+.|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            88888877776655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.03  E-value=2.6  Score=40.81  Aligned_cols=63  Identities=5%  Similarity=-0.048  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      .+-..+-.++-+.|+.++|.+.|++|.+..-. -+......|+.++...+.+.++..++.+-.+
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            33344555666777778888877777653211 1234566777777777777777777776544

The molecular function of this protein is uncertain.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.87  E-value=1.8  Score=35.45  Aligned_cols=134  Identities=10%  Similarity=0.083  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC--HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT--IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNT  231 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~  231 (513)
                      +...|..-++. ++.+..++|+.-|..+.+.|..+  +-.--.+.......|+...|...|+++-.. .-.|-.. -..-
T Consensus        58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~AR  135 (221)
T COG4649          58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLAR  135 (221)
T ss_pred             chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHH
Confidence            33445444443 56667777777777777776542  222222334456677777777777777654 2222221 0011


Q ss_pred             H--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          232 L--ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       232 l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      |  .-.+...|.++++..-.+-+-..|-..-...-..|--+-.+.|++.+|.++|..+...
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            1  1123455666666666555544333333344445555555666666666666666553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.84  E-value=3.1  Score=38.06  Aligned_cols=166  Identities=12%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010292          332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV  410 (513)
Q Consensus       332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  410 (513)
                      .+...++.+|...+..+...++.+.++.+.... ..+..+..-+..+.+.++.+++.+++.+|+..-..+  ...+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~--e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS--ESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc--cchHHHHH
Confidence            467788888988888887777777666653322 222223345677777889999999999999864422  12244445


Q ss_pred             HHHHh--cCcHHHHHHHHHHHHhcCCcccHh-hHHH-HHH---HHHhcC------CHHHHHHHHHHHHh-CCCCCCHHHH
Q 010292          411 SSYFR--CNAVDKLANFVKRAESAGWRLCRS-LYHS-KMV---MYASQR------RVEEMESVLKEMEN-YKIDCSKKTF  476 (513)
Q Consensus       411 ~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~-~~~~-li~---~~~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~  476 (513)
                      ..+..  ......+...+..+....+.|... .... ++.   ...+.+      +++...+++....+ .+.+.+..+-
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            44422  123345666666665444444443 1111 111   111221      24555555554332 2223333332


Q ss_pred             H---HHH----HHHHhcCCHhHHHHHHHHH
Q 010292          477 W---IMY----YAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       477 ~---~li----~~~~~~g~~~~A~~~~~~m  499 (513)
                      .   +++    ..+.++++|+.|.++|+--
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            2   333    3456799999999999854

It is also involved in sporulation [].

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.82  E-value=3.2  Score=38.15  Aligned_cols=130  Identities=17%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhccCC-CHhHHHHHHHHHHH--c----CChHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC-
Q 010292          172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMY--N----GLSDKCQSLFRDLKKEANI--SPSIVTYNTLISVFGRLLL-  241 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~-  241 (513)
                      +++..++++.|.+.|+. +..+|-+.......  .    -...+|.++|+.|++....  .++-.++..|+..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            56677889999999986 65666554333333  2    2367899999999986321  2445566666554  3333 


Q ss_pred             ---hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292          242 ---VDHMEAAFQEIKDSNLSPNVF--TYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNTYLLLL  303 (513)
Q Consensus       242 ---~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll  303 (513)
                         .+.++.+|+.+.+.|+..+..  ....++..+-....  ..++.++++.+.+.|+++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence               356788899998888766443  33333333222222  457889999999999998877766553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.66  E-value=0.11  Score=31.88  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=21.4

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL  196 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  196 (513)
                      ++..+...|.+.|++++|.++|++..+..+.|...|..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            344555555566666666666666555544455555444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.50  E-value=4.7  Score=38.55  Aligned_cols=72  Identities=10%  Similarity=0.057  Sum_probs=42.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccCC----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 010292          300 LLLLRGYAHSGNLPRMEKIYELVKHHVDG----KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR  375 (513)
Q Consensus       300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  375 (513)
                      +..+.++...|++.++..+++++...-.+    .+..+|+.++-.++++        .+-.+.+....++.+..|. |+.
T Consensus       132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYe-mil  202 (549)
T PF07079_consen  132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYE-MIL  202 (549)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHH-HHH
Confidence            45566677788888888887777664333    6777777777666653        1222233334445555453 555


Q ss_pred             HHHhc
Q 010292          376 VYAKE  380 (513)
Q Consensus       376 ~~~~~  380 (513)
                      .|.+.
T Consensus       203 fY~kk  207 (549)
T PF07079_consen  203 FYLKK  207 (549)
T ss_pred             HHHHH
Confidence            55443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.49  E-value=4.6  Score=38.49  Aligned_cols=125  Identities=11%  Similarity=0.051  Sum_probs=89.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhH-HHHHHHHHhc
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY-HSKMVMYASQ  451 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~  451 (513)
                      .+..-.+..-++.|..+|-+..+.+...+++.++++++..++ .|+...|..+|+.-...-  ||.-.| +-.+..+...
T Consensus       403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~i  479 (660)
T COG5107         403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRI  479 (660)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHh
Confidence            555556667789999999999888866677888999988655 578888899988543222  333333 5567777888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          452 RRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ++-+.|..+|+...++ +..+  ...|..+|.--..-|+...|..+-++|.+
T Consensus       480 nde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         480 NDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             CcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            9999999999854432 1222  45788899888888988777776666643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.42  E-value=0.73  Score=44.96  Aligned_cols=133  Identities=13%  Similarity=0.118  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ....+.++..+-+.|..+.|+++-..-.           .-.....+.|+++.|.++.++.       .+...|..|.+.
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~  356 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence            4557888888999999999988766532           2235567789998888765433       367799999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      ..+.|+++-|++.|++..+         |..|+-.|.-.|+.+...++.+.....|      -++....++.-.|++++.
T Consensus       357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c  421 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC  421 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred             HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence            9999999999999988764         6777778888888888888887777766      256666667777888887


Q ss_pred             HHHHHH
Q 010292          316 EKIYEL  321 (513)
Q Consensus       316 ~~~~~~  321 (513)
                      .+++..
T Consensus       422 v~lL~~  427 (443)
T PF04053_consen  422 VDLLIE  427 (443)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=4.7  Score=41.57  Aligned_cols=175  Identities=7%  Similarity=0.041  Sum_probs=92.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292          230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI----AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                      -.-|+..++...++.|+.+-+.   .+  .|..+...++    +-+.+.|++++|...|-+-... +.|     ..+|.-
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k  406 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK  406 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence            3445555556666666555432   22  2333333333    3344677888877776554431 222     233444


Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010292          306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  385 (513)
                      |....++..-..+++.+.+.|.. +...-+.|+.+|.+.++.++..+.   .+... .+..-......+..+.+.+-.++
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef---I~~~~-~g~~~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF---ISKCD-KGEWFFDVETALEILRKSNYLDE  481 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH---HhcCC-CcceeeeHHHHHHHHHHhChHHH
Confidence            55555556666667777777664 334446778888888766643333   33222 22222112246677777777777


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292          386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  429 (513)
                      |..+-.....      .......+   +...+++++|++++..+
T Consensus       482 a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  482 AELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            7765433221      12223333   34567788888877754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.21  E-value=6.5  Score=39.06  Aligned_cols=176  Identities=14%  Similarity=0.173  Sum_probs=116.1

Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc-CCC------HhHHHHHHHHHHH----cCCh
Q 010292          138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKT------IGTYNALLGAYMY----NGLS  206 (513)
Q Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~------~~~~~~li~~~~~----~g~~  206 (513)
                      .-+|..+...    +||   .+..+++..+=.|+-+.+++.+.+..+.+ +..      .-.|+.++..++.    ....
T Consensus       177 ~G~f~L~lSl----LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~  249 (468)
T PF10300_consen  177 FGLFNLVLSL----LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL  249 (468)
T ss_pred             HHHHHHHHHh----CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence            3455555443    333   45678888888899999999998876633 222      2345555555544    4567


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccCHHHHHH
Q 010292          207 DKCQSLFRDLKKEANISPSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWMWGKVEE  282 (513)
Q Consensus       207 ~~A~~~~~~m~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~  282 (513)
                      +.|.++++.+.++   -|+...|...- +.+...|++++|++.|++......   ......+--+.-++.-.++|++|.+
T Consensus       250 ~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  250 EEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            8999999999976   57876665433 556778999999999997653110   1123344455666778889999999


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHHh
Q 010292          283 IYQMMKAGPVMPDTNTYLLLLRGY-AHSGNL-------PRMEKIYELVKH  324 (513)
Q Consensus       283 ~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~-------~~a~~~~~~~~~  324 (513)
                      .|..+.+.. .-+..+|.-+..+| ...|+.       ++|.++|.++..
T Consensus       327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            999998753 22444555444433 446666       777778776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=94.20  E-value=4  Score=36.68  Aligned_cols=116  Identities=8%  Similarity=-0.041  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHHhc--cCCCHhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010292          171 NVDLAADLFAEAANK--HLKTIGTYNALLGAYMYN-G-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~--~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      .+.+|+.+|+.....  =+.|..+...+++..... + ....--++.+-+....|-.++..+...+|..+++.+++..-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            344555555522211  112555556666555541 1 222233333334433344566666666666666666666666


Q ss_pred             HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292          247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      ++++..... +..-|...|..+|......|+..-..++.++
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            666655543 4445666666666666666666555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.20  E-value=7.9  Score=40.03  Aligned_cols=150  Identities=11%  Similarity=0.068  Sum_probs=78.3

Q ss_pred             CHHHHHHHHHHh----cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292          155 TKEEYTKGIKFA----GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       155 ~~~~~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      |......+...|    .+.|++++|...|-+-...  -+   =..+|.-|....++.+-..+++.+.+. |+ .+...-.
T Consensus       363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le---~s~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhtt  435 (933)
T KOG2114|consen  363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LE---PSEVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTT  435 (933)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CC---hHHHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHH
Confidence            444444444443    3567777776666544321  11   123455555556666666666666654 54 3444556


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      .|+.+|.+.++.+.-.++.+... .|..  ..-....+..+.+.+-.++|..+-.....     .......++   -..+
T Consensus       436 lLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~  504 (933)
T KOG2114|consen  436 LLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLH  504 (933)
T ss_pred             HHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhc
Confidence            67777777777777666655543 2221  00123344555555555555555444332     222333333   3456


Q ss_pred             ChHHHHHHHHHH
Q 010292          311 NLPRMEKIYELV  322 (513)
Q Consensus       311 ~~~~a~~~~~~~  322 (513)
                      ++++|.+++..+
T Consensus       505 ny~eAl~yi~sl  516 (933)
T KOG2114|consen  505 NYEEALRYISSL  516 (933)
T ss_pred             CHHHHHHHHhcC
Confidence            777777776543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.14  E-value=1.7  Score=34.55  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=51.9

Q ss_pred             cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010292          117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~  194 (513)
                      .|....|......+ .++++.|.+.|+.+..+--.| +....+.-.++.+|.+.+++++|...+++..+.++. ....|-
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            34455666666666 346777777777776653222 234555666777777777777777777777776664 334455


Q ss_pred             HHHHHHHH
Q 010292          195 ALLGAYMY  202 (513)
Q Consensus       195 ~li~~~~~  202 (513)
                      ..+.+++.
T Consensus        87 ~Y~~gL~~   94 (142)
T PF13512_consen   87 YYMRGLSY   94 (142)
T ss_pred             HHHHHHHH
Confidence            55555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.13  E-value=4.5  Score=36.98  Aligned_cols=163  Identities=9%  Similarity=-0.033  Sum_probs=116.5

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCC
Q 010292          166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLL  241 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~  241 (513)
                      +-..|+..+|-..++++.+..+.|..+++..=.+|.-.|+.+.-...++++...+  .+|.    .......-++..+|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence            3456888888889999998766699999999999999999999999999988642  3444    333445556678899


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDTNTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      +++|++.-++..+.+. -|...-.++.+.+-..|++.++.+...+-...   +--.-.+-|-...-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            9999999988887553 36667777778888899999999877664331   1111123344444455667899999999


Q ss_pred             HHH-HHhccCCCcH
Q 010292          319 YEL-VKHHVDGKEF  331 (513)
Q Consensus       319 ~~~-~~~~~~~~~~  331 (513)
                      |+. |.+.-...|.
T Consensus       270 yD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  270 YDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHhhccch
Confidence            985 4443333344

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.07  E-value=8.4  Score=39.87  Aligned_cols=185  Identities=15%  Similarity=0.111  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHcCCCCCCC--CHHHHHHHHHHhc-ccCCHHHHHHHHHHHHhccC-C---C--HhHHHHHHHHHHHcCChH
Q 010292          137 ALEVLNWRRRQAGYGTPM--TKEEYTKGIKFAG-RINNVDLAADLFAEAANKHL-K---T--IGTYNALLGAYMYNGLSD  207 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~-~---~--~~~~~~li~~~~~~g~~~  207 (513)
                      |+..++.+.+.  ...+|  +..++-.+...+. ...+++.|+..+++.....- +   +  -..-..++..+.+.+...
T Consensus        40 ai~CL~~~~~~--~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   40 AIKCLEAVLKQ--FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            44555555432  22343  3344455566665 56789999998886643221 1   1  123345566677766655


Q ss_pred             HHHHHHHHHHHhCCC---CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--HccCHH
Q 010292          208 KCQSLFRDLKKEANI---SPSIVTYNTL-ISVFGRLLLVDHMEAAFQEIKDSN---LSPNVFTYNYLIAGYM--TAWMWG  278 (513)
Q Consensus       208 ~A~~~~~~m~~~~g~---~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~  278 (513)
                       |....++..+...-   .+-...|..+ +..+...++...|.+.++.+...-   ..|-..++-.++.+..  +.+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             88888887654211   1112233333 233333478888988888877532   2344555555555544  345566


Q ss_pred             HHHHHHHHHHcCC---------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 010292          279 KVEEIYQMMKAGP---------VMPDTNTYLLLLRGYA--HSGNLPRMEKIYELVKH  324 (513)
Q Consensus       279 ~a~~~~~~m~~~g---------~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~  324 (513)
                      ++.+.++++....         -.|-..+|..+++.++  ..|+++.+...++++.+
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~  253 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ  253 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777776663321         1345667777776665  46666677666665543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.04  E-value=2.5  Score=34.35  Aligned_cols=52  Identities=17%  Similarity=0.001  Sum_probs=26.4

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      .+.++.+++..+++.+.-..+.....-..-...+.+.|++.+|+.+|+++..
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            3455666666666665554443222222222334555666666666666554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.96  E-value=4.9  Score=37.20  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=25.4

Q ss_pred             cccCCHHHHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCChHHHHHH
Q 010292          167 GRINNVDLAADLFAEAANKHL--K-TIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      ....+.++|+..|.+...+--  . ...+|..+..+.++.|.+++++..
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~   65 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF   65 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence            345566666666665554211  1 234566666666666666655543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=8.8  Score=39.16  Aligned_cols=304  Identities=11%  Similarity=0.052  Sum_probs=165.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH--HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV--DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC  209 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A  209 (513)
                      +.+..|.++-.|+......    ...+|.....-+.+..+.  +++.+..++=.........+|..+..-...+|+.+.|
T Consensus       451 ~~Y~vaIQva~~l~~p~~~----~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA  526 (829)
T KOG2280|consen  451 HLYSVAIQVAKLLNLPESQ----GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELA  526 (829)
T ss_pred             chhHHHHHHHHHhCCcccc----ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHH
Confidence            4556677777776432211    145666666666655322  2233333322221123567888888888899999999


Q ss_pred             HHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCCHHHHHHHHH-----
Q 010292          210 QSLFRDLKKEANIS----PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-----------LSPNVFTYNYLIA-----  269 (513)
Q Consensus       210 ~~~~~~m~~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~li~-----  269 (513)
                      ..+++.=... +.+    .+..-+...+.-+.+.|+.+....++-+|.+.-           .+-....|.-++.     
T Consensus       527 ~kLle~E~~~-~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~  605 (829)
T KOG2280|consen  527 RKLLELEPRS-GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRA  605 (829)
T ss_pred             HHHHhcCCCc-cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchh
Confidence            9887643221 110    122345566777788888888887777766431           0111122222222     


Q ss_pred             ---HHHHccCHHHHHHHH--HHHH----cCCCCCCHHHHHHHHHHHHhcCChHHHH----------HHHHHHHh-ccCCC
Q 010292          270 ---GYMTAWMWGKVEEIY--QMMK----AGPVMPDTNTYLLLLRGYAHSGNLPRME----------KIYELVKH-HVDGK  329 (513)
Q Consensus       270 ---~~~~~g~~~~a~~~~--~~m~----~~g~~p~~~t~~~ll~~~~~~g~~~~a~----------~~~~~~~~-~~~~~  329 (513)
                         .+.+.++-.++..-|  +...    ..|..|+   .....++|.+.....-..          ++.+.+.. .|...
T Consensus       606 ~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f  682 (829)
T KOG2280|consen  606 TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF  682 (829)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence               011111111221111  1100    1122333   233344444444322111          12222222 23333


Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010292          330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI  409 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  409 (513)
                      ...+.+..+.-+...|+..+|.++...|   .-++-.-|-  .-+.+++..+++++-+++-+.+..    |  . -|.-+
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~w--Lk~~aLa~~~kweeLekfAkskks----P--I-Gy~PF  750 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWW--LKLTALADIKKWEELEKFAKSKKS----P--I-GYLPF  750 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHH--HHHHHHHhhhhHHHHHHHHhccCC----C--C-CchhH
Confidence            3344566666777788777666665444   333333332  468889999999998876544322    2  2 27778


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM  464 (513)
Q Consensus       410 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  464 (513)
                      +.+|.+.|+.++|.+++.+...     .    .-.+.+|.+.|++.+|.++--+-
T Consensus       751 Ve~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  751 VEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             HHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHHh
Confidence            8999999999999999886431     1    14677899999999998875543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.79  E-value=7.8  Score=38.49  Aligned_cols=117  Identities=13%  Similarity=0.101  Sum_probs=67.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHHHhcCcHHHHHHHHHHHHhc--CCc-ccHhhHHHHHHHHHhcCCHH
Q 010292          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKRAESA--GWR-LCRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~--~~~-~~~~~~~~li~~~~~~g~~~  455 (513)
                      ....+.|.+++..+..+-  |. ...|.. -.+.+...|++++|.+.+++....  .++ .....+--+.-.+.-..+|+
T Consensus       246 ~~~~~~a~~lL~~~~~~y--P~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRY--PN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            346777777777777642  22 222322 234555677888888888865421  111 11222333445566788888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH-------hHHHHHHHHHH
Q 010292          456 EMESVLKEMENYKIDCSKKTFWIMYY-AYATCGQR-------RKVNQVLGLMC  500 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~  500 (513)
                      +|.+.|..+.+.+ .-+..+|..+.- ++...|+.       ++|.++|.+..
T Consensus       323 ~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  323 EAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            8888888888765 334445553333 33456666       77777777653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.66  E-value=3.8  Score=37.88  Aligned_cols=128  Identities=10%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccHhhHH-
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCRSLYH-  442 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~-  442 (513)
                      .|..+....+.++++++.|+...+-.    ...-...++-+|-..|.+..++++|.-+..+..+    .++.--..-|. 
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            46666667778888888887766522    2222344677788888888899988877776532    22221111122 


Q ss_pred             ----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          443 ----SKMVMYASQRRVEEMESVLKEMEN----YKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       443 ----~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                          .+..++-..|+.-+|.+.-+|..+    .|-.+ -......+.+.|...|+.|.|+.-|++.
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence                233455567777777776665443    23222 2334446778888889988887766653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.65  E-value=5.6  Score=36.39  Aligned_cols=19  Identities=21%  Similarity=0.440  Sum_probs=11.4

Q ss_pred             cccCCHHHHHHHHHHHHhc
Q 010292          167 GRINNVDLAADLFAEAANK  185 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~  185 (513)
                      .+.|+++.|..++.+....
T Consensus         4 ~~~~~~~~A~~~~~K~~~~   22 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDL   22 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhH
Confidence            3556666666666665543

It is also involved in sporulation [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.57  E-value=1.9  Score=40.44  Aligned_cols=90  Identities=10%  Similarity=-0.013  Sum_probs=45.3

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhc-c----CC----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292          163 IKFAGRINNVDLAADLFAEAANK-H----LK----------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~-~----~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      -+.|.+.|++..|...|+..... +    .+          -..+++.|..+|.+.+++.+|++.-+.....  -++|+-
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~K  292 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVK  292 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchh
Confidence            34567888888888888875431 0    00          0223444444445555555555555444432  133333


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292          228 TYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      ..---..++...|+++.|+..|+++.+
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            444444444444455555555554444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.56  E-value=1  Score=40.58  Aligned_cols=78  Identities=12%  Similarity=0.050  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010292          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL  301 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~  301 (513)
                      .++..++..+...|+.+.+...++++..... -|...|..+|.+|.+.|+...|+..|+.+.+     -|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            3566677778888888888888888887654 3778888888888888888888888887765     477777766655


Q ss_pred             HHHH
Q 010292          302 LLRG  305 (513)
Q Consensus       302 ll~~  305 (513)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=2.5  Score=39.68  Aligned_cols=92  Identities=3%  Similarity=-0.072  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010292          334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY  413 (513)
Q Consensus       334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  413 (513)
                      +..+.-+|.+.+++..|.+.-...-.+.+.+.... | --..+|...|+++.|...|+++++  ..|.+..+-+.++..-
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL-y-RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL-Y-RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK  335 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH-H-HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence            33444445555555544444444444444444443 2 244555555566666666655555  3333443334444333


Q ss_pred             HhcCcHHH-HHHHHHHH
Q 010292          414 FRCNAVDK-LANFVKRA  429 (513)
Q Consensus       414 ~~~~~~~~-a~~~~~~m  429 (513)
                      .+...... ..++|..|
T Consensus       336 ~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333222 23444444

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.43  E-value=11  Score=39.00  Aligned_cols=43  Identities=23%  Similarity=0.244  Sum_probs=26.3

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN  203 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  203 (513)
                      .+|-.|.|+|++++|.++..+....-......+-..+..|+..
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence            3556667888888888888554443223455666667776664

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.19  E-value=5.7  Score=35.06  Aligned_cols=184  Identities=11%  Similarity=0.049  Sum_probs=118.9

Q ss_pred             cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010292          117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~  194 (513)
                      .|-...|...+..+ .++++.|...|+.+..+.- +-+....+.-.++.++-+.+++++|+..+++.....+. ....|-
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            46677899999988 5699999999999987643 34556777788888999999999999999999987764 445566


Q ss_pred             HHHHHHHHc-------CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-
Q 010292          195 ALLGAYMYN-------GLS---DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT-  263 (513)
Q Consensus       195 ~li~~~~~~-------g~~---~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-  263 (513)
                      .-|.+++.-       ++.   .+|+.-|+++.++   -||..             -..+|..-...+..      ... 
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~d------~LA~  168 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLND------ALAG  168 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHHH------HHHH
Confidence            666666542       233   3444555555544   24431             11222222222211      001 


Q ss_pred             H-HHHHHHHHHccCHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          264 Y-NYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       264 ~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      + -.+...|.+.|.+..|..-+++|.+. .+-   .....-.+..+|...|-.++|...-+-+..
T Consensus       169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            1 12446677888888888888888775 211   234455667778888888877776655554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.11  E-value=8  Score=36.56  Aligned_cols=177  Identities=11%  Similarity=-0.009  Sum_probs=100.0

Q ss_pred             CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292          224 PSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM--TAWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       224 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      |...+|-.+- .++...|+.++|..+--..++..   .+..+...+++.+  -.++.+.+...|++-+..+  |+...-.
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk  240 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK  240 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence            3334444332 44566788888887766665532   2344555555443  4667888888888877643  4432222


Q ss_pred             H---H----------HHHHHhcCChHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010292          301 L---L----------LRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE  364 (513)
Q Consensus       301 ~---l----------l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  364 (513)
                      .   .          -+-..+.|++..|.+.+.+.+..   ...+++..|........+.|+.+++..--.....+...-
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence            1   1          12345788999999999888763   345566667666677777887776544333222221111


Q ss_pred             cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010292          365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR  407 (513)
Q Consensus       365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  407 (513)
                      +...  ..-..++...++|++|.+-|++..+....+....++.
T Consensus       321 ikal--l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~  361 (486)
T KOG0550|consen  321 IKAL--LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR  361 (486)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            1111  1122334445778888888887776544433333333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.07  E-value=3.4  Score=32.13  Aligned_cols=91  Identities=9%  Similarity=-0.133  Sum_probs=66.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHH---HHHHHHHHHH
Q 010292          198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPNVFT---YNYLIAGYMT  273 (513)
Q Consensus       198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~---~~~li~~~~~  273 (513)
                      -+.+..|+.+.|++.|.+....  .+-+...||.-..++.-.|+.++|+.=+++..+. |.. +...   |.--...|..
T Consensus        51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence            4567889999999999998863  4567788999999999999999999888888764 322 2222   2223344666


Q ss_pred             ccCHHHHHHHHHHHHcCC
Q 010292          274 AWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       274 ~g~~~~a~~~~~~m~~~g  291 (513)
                      .|+.+.|..=|+..-+-|
T Consensus       128 ~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hCchHHHHHhHHHHHHhC
Confidence            778888877777665544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.07  E-value=3.4  Score=36.68  Aligned_cols=102  Identities=13%  Similarity=-0.008  Sum_probs=82.3

Q ss_pred             HHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHH
Q 010292          122 AFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALL  197 (513)
Q Consensus       122 ~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li  197 (513)
                      .|...+..+ .++...|.+.|....+.--. -......+--|...+...|+++.|..+|..+.+..+.   -...+--|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            688888888 56788899888877665321 2345667778999999999999999999999987653   467888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292          198 GAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      .+..+.|+.++|..+|+++.+++   |+..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~Y---P~t~  249 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRY---PGTD  249 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHC---CCCH
Confidence            89999999999999999999873   5543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.06  E-value=8.3  Score=36.61  Aligned_cols=65  Identities=11%  Similarity=0.007  Sum_probs=37.2

Q ss_pred             cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC---SKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ...+|..+...+-+.|+++.|...+..+...+...   .....-.-.+.....|+.++|+..+++..+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455666666666666666666666666533111   223344445556666666666666666655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.61  E-value=0.5  Score=28.93  Aligned_cols=27  Identities=15%  Similarity=0.199  Sum_probs=15.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          441 YHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      +..+...|.+.|++++|+++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444555555556666666666555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.26  E-value=0.36  Score=28.03  Aligned_cols=26  Identities=12%  Similarity=-0.000  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          475 TFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677788888888888888888744

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.89  E-value=8.6  Score=34.05  Aligned_cols=230  Identities=11%  Similarity=0.077  Sum_probs=143.7

Q ss_pred             cccCchhHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc---cC-
Q 010292          115 RRHSNGYAFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK---HL-  187 (513)
Q Consensus       115 ~~~p~~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~-  187 (513)
                      +..||+..=+..-.+-   ...|+.|+.-|+.+.++.+-.-..--.+...+|..+.+.|++++..+.+.++...   .+ 
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            3466766655555433   2478899999998887754333334456778899999999999999999887632   11 


Q ss_pred             C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010292          188 K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV----TYNTLISVFGRLLLVDHMEAAFQEIKDSNLS---  258 (513)
Q Consensus       188 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---  258 (513)
                      .  +..+.|+++.....+.+.+.-.++|+.-.....-.-|..    |-+-|.+.|...|++....++++++.+..-.   
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence            1  456788888888888887777777765332101111222    3345777788888888888888888743211   


Q ss_pred             --------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-----HhcCChHHHHH-HHHHHH
Q 010292          259 --------PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGY-----AHSGNLPRMEK-IYELVK  323 (513)
Q Consensus       259 --------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~-~~~~~~  323 (513)
                              .=...|..=|..|....+-.+...+|++... ..-.|..... .+|+-|     .+.|++++|.. +|+..+
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFK  259 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFK  259 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHh
Confidence                    1135677778888888888888888887654 2233444333 334433     46678877643 444444


Q ss_pred             h---ccCCCcHH--HHHHHHHHHHhcC
Q 010292          324 H---HVDGKEFP--LIRAMICAYSKCS  345 (513)
Q Consensus       324 ~---~~~~~~~~--~~~~li~~~~~~g  345 (513)
                      .   .|.+....  -|-.|.+++.+.|
T Consensus       260 NYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  260 NYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             cccccCCcchhHHHHHHHHHHHHHHcC
Confidence            3   34332222  3445556666654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.86  E-value=17  Score=37.42  Aligned_cols=104  Identities=10%  Similarity=0.158  Sum_probs=71.2

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL  239 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~  239 (513)
                      -|+.+.+.+.+++|+++-+.....-..  ....+...|..+.-.|++++|-...-.|...     +..-|--.+.-+...
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAEL  436 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccc
Confidence            467778888899998887766543222  3567888889999999999999988888753     666777777777766


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010292          240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT  273 (513)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (513)
                      ++....   +.-+.......+...|..++..+..
T Consensus       437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence            665543   2233332223456677777777665

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.82  E-value=0.23  Score=28.40  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=20.0

Q ss_pred             HHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       179 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      |++..+..+.+..+|+.+...|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34444444446777777777777777777664

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.58  E-value=8.4  Score=33.31  Aligned_cols=226  Identities=8%  Similarity=-0.063  Sum_probs=107.7

Q ss_pred             cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292          239 LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      .+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            34555555665555543221 12456666666777777777777777666542 22334555666666666666677777


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          317 KIYELVKHHVDGKEFPLIRAMIC-AYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAF  394 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  394 (513)
                      +.+.........+. ........ .+...|+++.+...+......... .............+...++.+.+...+.+..
T Consensus       116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            77766665433321 11111222 455556555555554443221111 0000001112222344555666666655555


Q ss_pred             hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      ...... ....+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+....
T Consensus       195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         195 KLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            532211 2233444555555555555555555555433221 1222222222333444555555555555443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.38  E-value=3.2  Score=34.89  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLK  217 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~  217 (513)
                      .+..+...|++.|+.++|++.|.++.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~   63 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRAR   63 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            34444444444444444444444444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.22  E-value=5.9  Score=31.59  Aligned_cols=74  Identities=9%  Similarity=-0.078  Sum_probs=37.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          377 YAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      ..+.|++++|.+.|+.+..+-... -....--.++.+|.+.+++++|...+++..+.....-..-|...+.+++.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            345566666666666655532211 11222334566666666666666666666554433223334545555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.03  E-value=0.6  Score=27.07  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHH
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRD  215 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~  215 (513)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45556666666666666666665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.66  E-value=8.2  Score=32.45  Aligned_cols=59  Identities=7%  Similarity=0.032  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEM  464 (513)
Q Consensus       406 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m  464 (513)
                      +..+...|++.|+.+.|.+.+.++.+....+.  ...+-.+|......+++..+...+.+.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44455555555555555555555544332222  223344455555555555555555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.51  E-value=18  Score=35.30  Aligned_cols=155  Identities=10%  Similarity=0.084  Sum_probs=88.0

Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292          273 TAWMWGKVEEIYQMMKAGPVMPDTN-TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      +..+...-.++-++..+  +.||-. .|..|.  --....+.++++++++..+.|-..  .-......   ..|.     
T Consensus       180 RERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~-----  245 (539)
T PF04184_consen  180 RERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH-----  245 (539)
T ss_pred             hcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc-----
Confidence            44455555555555555  345533 332222  123445788888888877653210  00000111   1110     


Q ss_pred             HHHHHHHhCCCCCccc--chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292          352 KIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       352 ~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  429 (513)
                       ..   +....++..+  +.-..+..++-+.|+.++|++.++++++.....+...+...|+.++...+.+.++..++.+-
T Consensus       246 -~~---e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  246 -FW---EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             -hh---hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence             01   1111222222  21224777778889999999999999876544456667888999999999999999999987


Q ss_pred             HhcCCcc-cHhhHHHHH
Q 010292          430 ESAGWRL-CRSLYHSKM  445 (513)
Q Consensus       430 ~~~~~~~-~~~~~~~li  445 (513)
                      .+...+. -...|+..+
T Consensus       322 dDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  322 DDISLPKSATICYTAAL  338 (539)
T ss_pred             ccccCCchHHHHHHHHH
Confidence            5443222 234465544

The molecular function of this protein is uncertain.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.46  E-value=8.9  Score=31.61  Aligned_cols=124  Identities=9%  Similarity=-0.005  Sum_probs=55.8

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHhcCcHH
Q 010292          343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI--VSSYFRCNAVD  420 (513)
Q Consensus       343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~  420 (513)
                      +.+..+++..++..+++..-.++.......+.......|+-..|...|+++-.....|.-..-...|  ...+..+|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3444555555544444433333222211123334455566666666666665543333211111111  11233455565


Q ss_pred             HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ....-++-+...+-..-...-..|--+-.+.|++.+|.+.|..+.+
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5555555444333332233334444444456666666666666554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.42  E-value=8  Score=31.01  Aligned_cols=52  Identities=12%  Similarity=-0.049  Sum_probs=33.2

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      ..++.+++..+++.|.-..+.....-..-...+...|++++|+.+|+++...
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            4677777777777777655533322222333456778888888888887754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.96  E-value=3.8  Score=37.08  Aligned_cols=99  Identities=11%  Similarity=0.106  Sum_probs=57.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      ...+-..++..-....+++.+...+-+++....  ..|+.. -.+++..+. .-+.+.++.++..=++.|+-||..+++.
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence            444555555555555667777777766654210  112211 122233322 2355677777777677777777777777


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHc
Q 010292          267 LIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +|+.+.+.+++.+|.++.-.|..
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHH
Confidence            77777777777777776666544

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.53  E-value=6.9  Score=28.95  Aligned_cols=70  Identities=10%  Similarity=0.102  Sum_probs=41.9

Q ss_pred             HHHHHccCHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292          269 AGYMTAWMWG--KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       269 ~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      ..|....+.|  +..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++..-. +....|..+++
T Consensus        16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq   87 (108)
T PF02284_consen   16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ   87 (108)
T ss_dssp             HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred             HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence            3444434333  5666666677777888888888888888888888888888887776422 22225655543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK11906 transcriptional regulator; Provisional

Probab=89.48  E-value=20  Score=34.86  Aligned_cols=111  Identities=7%  Similarity=-0.025  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292          383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      ..+|.++-+...+.  .+.|......+..+....++++.|...|++....+.. ...+|......+.-.|+.++|.+.++
T Consensus       320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45566666666663  3445555555666667777899999999988765522 23444444445566889999999998


Q ss_pred             HHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010292          463 EMENYK-IDCSKKTFWIMYYAYATCGQRRKVNQVLG  497 (513)
Q Consensus       463 ~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~  497 (513)
                      +..+.. .+--.......++.|+..+ .+.|.+++-
T Consensus       397 ~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  431 (458)
T PRK11906        397 KSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY  431 (458)
T ss_pred             HHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence            866543 1112233334444666654 456666554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.29  E-value=14  Score=32.32  Aligned_cols=53  Identities=15%  Similarity=0.238  Sum_probs=25.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRCIVSSYFRCNAVDKLANFV  426 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~  426 (513)
                      .|-.+....++..|.+.+++-.+-+  ..+.+..+...|+.+| ..|+.+++.+++
T Consensus       196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            3444445556666666665432221  2233445555555554 345555554443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.21  E-value=37  Score=36.97  Aligned_cols=82  Identities=15%  Similarity=0.070  Sum_probs=42.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      -+.+|..+|+|.+|..+..++......  ...+-..|+.-+...++.-+|-+++.+...   .     +.-.+..|++..
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~~~de--~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSEGKDE--LVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAK 1040 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcCCHHH--HHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHh
Confidence            456666667777777666554332111  111123455566666666666666555432   1     122344566666


Q ss_pred             CHHHHHHHHHHH
Q 010292          453 RVEEMESVLKEM  464 (513)
Q Consensus       453 ~~~~A~~~~~~m  464 (513)
                      .|++|..+...-
T Consensus      1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHHhc
Confidence            677776665443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.19  E-value=2.1  Score=38.69  Aligned_cols=94  Identities=11%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      ++..-....+++.++..+-++......  .++...+ .+++.| -.-+.++++.++..=...|+-||..+++.+|+.+.+
T Consensus        70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk  147 (418)
T KOG4570|consen   70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK  147 (418)
T ss_pred             hhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence            333334456677777766665543211  1112112 233333 334667888888888889999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 010292          451 QRRVEEMESVLKEMENYK  468 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~  468 (513)
                      .+++.+|..+.-.|..+.
T Consensus       148 ~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  148 KENYKDAASVVTEVMMQE  165 (418)
T ss_pred             cccHHHHHHHHHHHHHHH
Confidence            999999999888777654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.17  E-value=11  Score=31.03  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=9.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q 010292          373 LIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~  392 (513)
                      ++..+...|++-+|.++.+.
T Consensus        95 iievLL~~g~vl~ALr~ar~  114 (167)
T PF07035_consen   95 IIEVLLSKGQVLEALRYARQ  114 (167)
T ss_pred             HHHHHHhCCCHHHHHHHHHH
Confidence            44444455555555554433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.99  E-value=13  Score=31.38  Aligned_cols=95  Identities=7%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      .+...+...+++++|+..++..+.......- ..+=-.|.+.....|.+|+|+..++.....++.+  .....-.+.+..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~  171 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHH
Confidence            3567788889999999998877653222111 1111234556677889999999998877666543  222344577888


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 010292          451 QRRVEEMESVLKEMENYK  468 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~  468 (513)
                      .|+-++|..-|++..+.+
T Consensus       172 kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         172 KGDKQEARAAYEKALESD  189 (207)
T ss_pred             cCchHHHHHHHHHHHHcc
Confidence            999999999999888775

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.58  E-value=13  Score=30.78  Aligned_cols=21  Identities=29%  Similarity=0.194  Sum_probs=9.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC
Q 010292          221 NISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~  241 (513)
                      |++|+...|..+++.+.+.|+
T Consensus        24 ~i~~~~~L~~lli~lLi~~~~   44 (167)
T PF07035_consen   24 NIPVQHELYELLIDLLIRNGQ   44 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHcCC
Confidence            444444444444444444443

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=88.52  E-value=14  Score=32.19  Aligned_cols=69  Identities=10%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             HHhcCcHHHHHHHHHHHHh-cC-----------CcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          413 YFRCNAVDKLANFVKRAES-AG-----------WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY  480 (513)
Q Consensus       413 ~~~~~~~~~a~~~~~~m~~-~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  480 (513)
                      +...|++..|+.-+..-.. .|           -.|.+.....++..|. .+++++|.+++.++-+.|+.|.- ..+.+.
T Consensus       202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~F  279 (333)
T KOG0991|consen  202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLF  279 (333)
T ss_pred             hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence            4567888888777765421 11           1355555555555443 56788888888888888876643 233444


Q ss_pred             HHH
Q 010292          481 YAY  483 (513)
Q Consensus       481 ~~~  483 (513)
                      +.+
T Consensus       280 Rv~  282 (333)
T KOG0991|consen  280 RVV  282 (333)
T ss_pred             HHH
Confidence            444

>PRK11906 transcriptional regulator; Provisional

Probab=88.05  E-value=27  Score=33.95  Aligned_cols=159  Identities=11%  Similarity=-0.002  Sum_probs=87.7

Q ss_pred             HHH--HHHHHHhccc-----CCHHHHHHHHHHHH---hccCCCHhHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 010292          157 EEY--TKGIKFAGRI-----NNVDLAADLFAEAA---NKHLKTIGTYNALLGAYMY---------NGLSDKCQSLFRDLK  217 (513)
Q Consensus       157 ~~~--~~ll~~~~~~-----g~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~  217 (513)
                      ..|  ...+.+....     -..+.|+.+|++..   +..+.....|..+..++..         .....+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5555554432     24567788888877   4333234455444433322         223455666666666


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-CCCC
Q 010292          218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPD  295 (513)
Q Consensus       218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~  295 (513)
                      +.  -.-|......+..+..-.++++.|..+|++....+  || ..+|...-..+.-.|+.++|.+.+++..+.. .+.-
T Consensus       332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            43  14466666666666677777888888888877643  33 3444444445556777888888877755421 1112


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHH
Q 010292          296 TNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       296 ~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .......++.|+.. .++.|.+++-
T Consensus       408 ~~~~~~~~~~~~~~-~~~~~~~~~~  431 (458)
T PRK11906        408 AVVIKECVDMYVPN-PLKNNIKLYY  431 (458)
T ss_pred             HHHHHHHHHHHcCC-chhhhHHHHh
Confidence            23333334455443 3555555553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.01  E-value=34  Score=34.98  Aligned_cols=87  Identities=14%  Similarity=0.053  Sum_probs=41.4

Q ss_pred             HhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292          237 GRLLLVDHMEAAFQEIKD-------SNLSPNVFTYNYLIAGYMTAW-----MWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      ....|.+.|...|+...+       .|   +....+-+-.+|.+..     +.+.|..+|.+.-+.|. |+.......+.
T Consensus       260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~  335 (552)
T KOG1550|consen  260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY  335 (552)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence            344566666666666544       33   2223344444444422     44556666666555552 34333322222


Q ss_pred             HHHh-cCChHHHHHHHHHHHhccC
Q 010292          305 GYAH-SGNLPRMEKIYELVKHHVD  327 (513)
Q Consensus       305 ~~~~-~g~~~~a~~~~~~~~~~~~  327 (513)
                      -... ..+...|.++|...-+.|.
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~~G~  359 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAKAGH  359 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHHcCC
Confidence            2222 2345566666666655543

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.82  E-value=8.8  Score=28.08  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=36.5

Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      .++-..|...-+....|++.+..+.+++|-+.+++..|.++|+.++.+...+...|..+++
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq   84 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence            3444444444445567777777777777777777777777777666432223335555443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.29  E-value=0.34  Score=39.13  Aligned_cols=85  Identities=9%  Similarity=0.119  Sum_probs=47.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .++..+.+.+..+....+++.+... +..-+....+.++..|++.++.+...++++..       +..-...++..|.+.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~   83 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKH   83 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhc
Confidence            3455555666666666666666653 33445666666777777766666666665521       112234455556666


Q ss_pred             cCHHHHHHHHHHH
Q 010292          275 WMWGKVEEIYQMM  287 (513)
Q Consensus       275 g~~~~a~~~~~~m  287 (513)
                      |.++++.-++.++
T Consensus        84 ~l~~~a~~Ly~~~   96 (143)
T PF00637_consen   84 GLYEEAVYLYSKL   96 (143)
T ss_dssp             TSHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHc
Confidence            6666666665554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.94  E-value=15  Score=29.93  Aligned_cols=52  Identities=13%  Similarity=0.088  Sum_probs=27.0

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHcC
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      .+.++.+++..+++-|.-.  .|.......+ ...+.+.|++.+|.++|+++...
T Consensus        21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            4455666666666666542  2332222111 12244566677777777766554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=86.65  E-value=20  Score=30.89  Aligned_cols=161  Identities=15%  Similarity=0.150  Sum_probs=95.1

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      -+.+||-+--.+...|+++.|.+.|+...+.++.... ..|.-|. +--.|+++.|.+=|...-+.   .|+..--...+
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LWL  173 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD---DPNDPFRSLWL  173 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc---CCCChHHHHHH
Confidence            4567888888888999999999999999887654222 2232222 33468899998888877764   23322222222


Q ss_pred             HHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHH
Q 010292          234 SVFGRLLLVDHMEAAF-QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV------MPDTNTYLLLLRGY  306 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~p~~~t~~~ll~~~  306 (513)
                      -.--..-+..+|..-+ ++..+    .|..-|...|-.|--. ++ ....+++..+...-      +.=..||--|.+-+
T Consensus       174 Yl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLg-ki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         174 YLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLG-KI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHh-hc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            2223344566666544 33332    3544555444433221 11 11223333333111      01246788888889


Q ss_pred             HhcCChHHHHHHHHHHHhc
Q 010292          307 AHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~  325 (513)
                      ...|+.++|..+|+-.+..
T Consensus       248 l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         248 LSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hccccHHHHHHHHHHHHHH
Confidence            9999999999999987765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.51  E-value=0.97  Score=25.81  Aligned_cols=24  Identities=8%  Similarity=0.083  Sum_probs=15.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHhHHH
Q 010292          470 DCSKKTFWIMYYAYATCGQRRKVN  493 (513)
Q Consensus       470 ~p~~~~~~~li~~~~~~g~~~~A~  493 (513)
                      +-|...|..+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            445666666666666666666664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.32  E-value=2  Score=25.52  Aligned_cols=27  Identities=15%  Similarity=0.126  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          474 KTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      .+++.|...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            466777777777777777777777654

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=85.94  E-value=27  Score=31.68  Aligned_cols=132  Identities=12%  Similarity=0.064  Sum_probs=82.2

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL-L-LVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                      +..+.+|+.+|+....+..+--|..+...+++..... + ....-.++.+-+. +.|-.++..+...++..+++.+++.+
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            3445667777763321113455666777777666552 2 2222233333333 23456777888888888888888888


Q ss_pred             HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhccCCCcHHHH
Q 010292          280 VEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL-----VKHHVDGKEFPLI  334 (513)
Q Consensus       280 a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~  334 (513)
                      -.++++.-... +..-|...|..+|+.....|+..-..++.++     +++.++..+...-
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~  281 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELR  281 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHH
Confidence            88888876654 4556788888888888888887766666654     3344444444443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.83  E-value=8.7  Score=28.12  Aligned_cols=46  Identities=13%  Similarity=0.186  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4555555666666777777777777777777777777777776663

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=85.79  E-value=47  Score=34.42  Aligned_cols=64  Identities=9%  Similarity=0.107  Sum_probs=41.3

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHC
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-------VDHMEAAFQEIKDS  255 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~  255 (513)
                      +...| .+|--|.|+|++++|.++..+...  +.......+-..+..|....+       -+....-|++....
T Consensus       111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~  181 (613)
T PF04097_consen  111 GDPIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN  181 (613)
T ss_dssp             TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred             CCccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            34455 456778899999999999977765  345566677778888876532       23445555555543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.74  E-value=2.5  Score=23.78  Aligned_cols=29  Identities=10%  Similarity=0.115  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+|..+..+|...|++++|++.|++.++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46777788888888888888888877653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=85.57  E-value=11  Score=27.94  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=33.8

Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ++-..|...-+....|++.+..+.+++|-+.+++..|.++|+.++.+-......|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            333444444445567777777777777777777777777777766543222225655554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.04  E-value=3.5  Score=23.15  Aligned_cols=27  Identities=19%  Similarity=0.269  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      +|..+...|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455555566666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11619 lytic murein transglycosylase; Provisional

Probab=85.00  E-value=52  Score=34.25  Aligned_cols=116  Identities=9%  Similarity=0.044  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010292          381 DCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME  458 (513)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~  458 (513)
                      .+.+.|..++...........  ...+...+.......+...++.+.+.......  .+......-+....+.++++.+.
T Consensus       255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~  332 (644)
T PRK11619        255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN  332 (644)
T ss_pred             hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence            355777777776544322211  12223333333333322445555555433222  23344455555556788888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..+..|.... .-...-.--+.+++...|+.++|..+|++.
T Consensus       333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8887775432 223333335667767788888888888775

>PF14669 Asp_Glu_race_2: Putative aspartate racemase

Probab=84.89  E-value=22  Score=29.86  Aligned_cols=55  Identities=9%  Similarity=0.094  Sum_probs=32.4

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCc--------------ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292          408 CIVSSYFRCNAVDKLANFVKRAESAGWR--------------LCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       408 ~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      +++..|-+..++.++.++++.|.+..+.              +--...|.....|.+.|.+|.|..+++
T Consensus       137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr  205 (233)
T PF14669_consen  137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR  205 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence            4566677777777777777777554322              222234455555566666666666655

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.88  E-value=19  Score=28.99  Aligned_cols=54  Identities=4%  Similarity=0.003  Sum_probs=35.4

Q ss_pred             cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010292          344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS  399 (513)
Q Consensus       344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  399 (513)
                      .++.++++.++..++-+.++.....+  .-.-.+...|++++|.++|+++.+.+..
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~   76 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGA   76 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence            56667777777777776665554443  2344456778888888888887775544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=84.56  E-value=32  Score=35.41  Aligned_cols=93  Identities=11%  Similarity=0.026  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CC-------HhHHHHHHHHHHHcCC
Q 010292          134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KT-------IGTYNALLGAYMYNGL  205 (513)
Q Consensus       134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~-------~~~~~~li~~~~~~g~  205 (513)
                      +++-...++.|+++-.....++..+-..++-.|-...+++...++.+.++...- -+       ...|...+.---+-|+
T Consensus       179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD  258 (1226)
T KOG4279|consen  179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD  258 (1226)
T ss_pred             cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence            344445566666654444445556666666666677777777777776655310 00       1123333333333456


Q ss_pred             hHHHHHHHHHHHHh-CCCCCCH
Q 010292          206 SDKCQSLFRDLKKE-ANISPSI  226 (513)
Q Consensus       206 ~~~A~~~~~~m~~~-~g~~p~~  226 (513)
                      -++|+++.-.|.+. +.+.||.
T Consensus       259 RakAL~~~l~lve~eg~vapDm  280 (1226)
T KOG4279|consen  259 RAKALNTVLPLVEKEGPVAPDM  280 (1226)
T ss_pred             HHHHHHHHHHHHHhcCCCCCce
Confidence            66666666555443 2344553

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.52  E-value=6.3  Score=39.09  Aligned_cols=27  Identities=11%  Similarity=-0.013  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010292          261 VFTYNYLIAGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m  287 (513)
                      ..-|..|-++....|++..|.+.|...
T Consensus       666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  666 EVKWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence            334555555555555555555544443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.88  E-value=3.4  Score=23.09  Aligned_cols=29  Identities=10%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      ..|..+...|...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35667777888888888888888877653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.75  E-value=4.2  Score=22.66  Aligned_cols=27  Identities=19%  Similarity=0.189  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      .|..+...+...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            445555556666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.43  E-value=3.2  Score=24.55  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLK  217 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~  217 (513)
                      +++.|...|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            45555555555555555555555543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.32  E-value=36  Score=30.35  Aligned_cols=202  Identities=14%  Similarity=0.094  Sum_probs=112.7

Q ss_pred             CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHc---CCCC
Q 010292          221 NISPSIVTYNTLISVF-GRLLLVDHMEAAFQEIKDSNLSPNV---FTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVM  293 (513)
Q Consensus       221 g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~  293 (513)
                      +-.||+..=|..-.+- .+..+.++|+.-|++..+..-+...   ...-.+|..+.+.|++++..+.|.+|..   ..+.
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            4467765444322221 2344788899999988875333333   3345567888889999999998888864   1121


Q ss_pred             --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010292          294 --PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEFP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR  366 (513)
Q Consensus       294 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  366 (513)
                        -+..+.++++.-.....+.+.-.++++.-.+. .-..+..    |-+.|-..|...|.+.+..++++.+......+-.
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence              23556677777776666666655555432221 0001111    2234556666667666666666665544322111


Q ss_pred             c----------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-----hcCcHHHHH
Q 010292          367 P----------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-----RCNAVDKLA  423 (513)
Q Consensus       367 ~----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~  423 (513)
                      .          -+|++-|..|....+-.....++++.+.-....|.+.+ ..+|+-|.     +.|.+++|.
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~Ah  251 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAH  251 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHH
Confidence            1          12445566666666667777777766654444444432 34454443     345566553

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=82.11  E-value=25  Score=28.28  Aligned_cols=81  Identities=6%  Similarity=0.082  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNL-----SPNVFTYNYLIAGYMTAWM-WGKVEEIYQMMKAGPVMPDTNTYLLL  302 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~l  302 (513)
                      .|.++.-....+++.....+++.+.-...     ..+..+|++++.+..+... --.+..+|..|++.+.+++..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            45566666666666666666666532100     1244566777776655544 33456667777766667777777777


Q ss_pred             HHHHHhc
Q 010292          303 LRGYAHS  309 (513)
Q Consensus       303 l~~~~~~  309 (513)
                      |.++.+.
T Consensus       122 i~~~l~g  128 (145)
T PF13762_consen  122 IKAALRG  128 (145)
T ss_pred             HHHHHcC
Confidence            7776554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.99  E-value=25  Score=35.18  Aligned_cols=132  Identities=15%  Similarity=0.031  Sum_probs=89.0

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .-+.+.+.+.+.|-.++|+++--.       +..    -.....+.|+++.|.++..+..       +..-|..|.++..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s~D-------~d~----rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al  677 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELSTD-------PDQ----RFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAAL  677 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcCCC-------hhh----hhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHh
Confidence            345555555666666555544221       111    1123345677777776655442       5678999999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010292          238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      +.|++..|.+.|.....         |..|+-.+...|+.+....+-...++.|..      |...-++...|+++++.+
T Consensus       678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~  742 (794)
T KOG0276|consen  678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE  742 (794)
T ss_pred             hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence            99999999999987764         566777788888888777777777777632      334455677899999888


Q ss_pred             HHHHH
Q 010292          318 IYELV  322 (513)
Q Consensus       318 ~~~~~  322 (513)
                      ++..-
T Consensus       743 lLi~t  747 (794)
T KOG0276|consen  743 LLIST  747 (794)
T ss_pred             HHHhc
Confidence            87543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.85  E-value=0.31  Score=39.40  Aligned_cols=119  Identities=12%  Similarity=0.173  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      ++..+.+.+..+....+++.+...+.. .+....+.++..|++.++.++..++++...  +     .-...++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence            788888888888888888888865433 346678888888888887777777777211  1     12245677778888


Q ss_pred             CHHHHHHHHHHHHhCC--CC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          453 RVEEMESVLKEMENYK--ID--CSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~--~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      .+++|.-++.++....  +.  -....|...+..+.+.++.+-...+.+..
T Consensus        85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~  135 (143)
T PF00637_consen   85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYC  135 (143)
T ss_dssp             SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            8888888887765322  11  12233344444455555544444444333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.58  E-value=72  Score=32.65  Aligned_cols=149  Identities=11%  Similarity=-0.016  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHH--HH-HHHcCChHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHhcC-
Q 010292          172 VDLAADLFAEAANKHLKTIGTYNALL--GA-YMYNGLSDKCQSLFRDLKK-------EANISPSIVTYNTLISVFGRLL-  240 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~~~~~m~~-------~~g~~p~~~~~~~li~~~~~~g-  240 (513)
                      ...|.++++...+.|.......-.++  .+ +....+.+.|+.+|+...+       + |   +....+-+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCC
Confidence            56788888888887653222222222  22 4567789999999998876       3 3   3335566666776643 


Q ss_pred             ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--hcCChH
Q 010292          241 ----LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA--HSGNLP  313 (513)
Q Consensus       241 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~  313 (513)
                          +.+.|..++.+.-+.|. |+....-..+.-... ..+...|.++|...-+.|.. +..-+..++....  -..+..
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence                56779999988888775 454433322222222 24577999999998888743 2222222222221  233677


Q ss_pred             HHHHHHHHHHhcc
Q 010292          314 RMEKIYELVKHHV  326 (513)
Q Consensus       314 ~a~~~~~~~~~~~  326 (513)
                      .|..++++..+.|
T Consensus       382 ~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  382 LAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHHHcc
Confidence            8888888888776

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.55  E-value=5.2  Score=22.35  Aligned_cols=27  Identities=7%  Similarity=0.154  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          475 TFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566677777777777777777776654

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.51  E-value=49  Score=30.67  Aligned_cols=162  Identities=6%  Similarity=-0.071  Sum_probs=109.6

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcc
Q 010292          200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY----NYLIAGYMTAW  275 (513)
Q Consensus       200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g  275 (513)
                      ..-.|+..+|-..++++.++  .+-|...++..=.+|.-.|+.+.-...++++... -.+|...|    ....-++...|
T Consensus       113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence            44568888999999999974  5778889999999999999999999999888743 12343332    33344556789


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC---cHHHHHHHHHHHHhcCChhHHHH
Q 010292          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK---EFPLIRAMICAYSKCSVTDRIKK  352 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~  352 (513)
                      -+++|++.-++..+-+ +-|...-.++...+-..|+..++.++..+-...-...   -..-|-...-.+...+.++.|.+
T Consensus       190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            9999999999888744 2366677777778888899999988876544321111   11112222334555677887777


Q ss_pred             HHH--HHHhCCCCCc
Q 010292          353 IEA--LMRLIPEKEY  365 (513)
Q Consensus       353 ~~~--~~~~~~~~~~  365 (513)
                      ++.  +..+....+.
T Consensus       269 IyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  269 IYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHHhhccch
Confidence            743  4455555444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=80.47  E-value=36  Score=29.14  Aligned_cols=58  Identities=14%  Similarity=0.096  Sum_probs=30.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA  432 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  432 (513)
                      +...+...+.++.|...+.........  ....+..+...+...+..+.+...+......
T Consensus       208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         208 LGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445555555666666666666553222  1222333333444555677777666665543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=80.26  E-value=68  Score=32.21  Aligned_cols=130  Identities=15%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .|..+|.---.....+.+..+++.+...-+---.-|-.....=.+-|..+.+.++|++-.+  |++-+...|...+..++
T Consensus        47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~  124 (577)
T KOG1258|consen   47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLK  124 (577)
T ss_pred             chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHh
Confidence            3334443333333334444444444432111222333333333444555555555555553  44444444444333322


Q ss_pred             -hcCChhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          238 -RLLLVDHMEAAFQEIKDS-NLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       238 -~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                       ..|+.+.....|+..+.. |.. .....|...|..-...+++..+.++|++.++
T Consensus       125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile  179 (577)
T KOG1258|consen  125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE  179 (577)
T ss_pred             ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence             234444444444444431 110 1233444444444445555555555555544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.17  E-value=13  Score=31.89  Aligned_cols=57  Identities=14%  Similarity=0.010  Sum_probs=33.7

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010292          160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL  216 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  216 (513)
                      +..++.+.+.+.+.+|+...++-.+..+.+...-..+++.+|-.|++++|..-++..
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            344555556666666666666555554445555566666666666666666555544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.06  E-value=3.6  Score=25.17  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=14.1

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          479 MYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       479 li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      |..+|...|+.+.|.+++++....
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            445666666666666666665543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	513
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.8 bits (161), Expect = 9e-12
 Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 15/244 (6%)

Query: 134 PRLALEVLNWRRRQAGYGTPMTK-------EEYTKGIKFAGRINNVDLAADLFAEAANKH 186
             L  +    + R       +         +  T+ ++   R+ +  +A  L        
Sbjct: 28  KILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAP 87

Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVD 243
                   A L       LS   +        +A +S                 +L L  
Sbjct: 88  ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147

Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
           H+       +       +  YN ++ G+     + ++  +  M+K   + PD  +Y   L
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207

Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
           +            +            +  L    +      S  DR   ++A+ ++ P  
Sbjct: 208 QCMGRQDQDAGTIERC-----LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262

Query: 364 EYRP 367
              P
Sbjct: 263 SLPP 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 70/510 (13%), Positives = 147/510 (28%), Gaps = 115/510 (22%)

Query: 76  RVRKDLTQTVSALRDELLANVDDLDK--VFRV--LDEKGSCLFRRHSNGYAFVELMKQLG 131
           R    +T+     RD L  +     K  V R+    +    L          ++ +   G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI-----NNVDLAADLFAEAANKH 186
            +  +AL+V    + Q                K   +I      N +    +        
Sbjct: 163 -KTWVALDVCLSYKVQ---------------CKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 187 LKTIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSI-----VTYNTLISVFG--- 237
            +    + +    +          Q+  R L K       +     V      + F    
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 238 RLLL-------VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKA 289
           ++LL        D + AA       +      T + +    +  ++  + +++  +++  
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTT 325

Query: 290 GPV-----------MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
            P               T         + H       +K+  +++  ++  E    R M 
Sbjct: 326 NPRRLSIIAESIRDGLATWDN------WKHVNC----DKLTTIIESSLNVLEPAEYRKM- 374

Query: 339 CAYSKCSVTDRIKKIEA--LMRL---IPEKEYRPWLNVL----LIRVYAKE------DC- 382
             + + SV      I    L  +   + + +    +N L    L+    KE         
Sbjct: 375 --FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK-LANFV----KRAESAG-WRL 436
           LE   K  N+   H++ V    I +   S       +D+   + +    K  E      L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 437 CRSLY-----------HSKMVMYASQRRVEEMESVLKEMENYK--IDCSKKTFWIMYYAY 483
            R ++           H      AS      + + L++++ YK  I  +   +  +  A 
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASG----SILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 484 ----ATCGQ---RRKVNQVL--GLMCKNGY 504
                   +     K   +L   LM ++  
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.84
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.75
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.56
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.56
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.51
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.49
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.48
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.43
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.37
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.34
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.29
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.29
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.26
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.22
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.16
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.16
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.15
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.06
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.0
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.97
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.96
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.95
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.92
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.92
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.85
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.84
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.84
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.83
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.74
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.73
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.71
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.69
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.68
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.67
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.65
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.58
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.57
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.57
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.54
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.52
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.5
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.49
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.49
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.48
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.46
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.41
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.4
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.38
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.32
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.32
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.31
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.27
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.25
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.2
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.17
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.16
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.15
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.1
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.03
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.03
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.0
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.0
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.96
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.95
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.92
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.89
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.83
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.79
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.74
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.73
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.69
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.67
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.66
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.64
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.55
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.52
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.5
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.48
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.45
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.41
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.26
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.16
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.81
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.7
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.52
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.4
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.39
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.19
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.16
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.12
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.87
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.64
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.38
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.34
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.16
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.16
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.7
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.67
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.4
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.28
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.85
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.7
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.56
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.43
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.26
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.82
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.75
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.51
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.83
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.21
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.1
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	88.59
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.58
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.47
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.16
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.9
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	83.16
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	82.51
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	81.67
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.32
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	80.01

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-33  Score=286.63  Aligned_cols=401  Identities=9%  Similarity=-0.066  Sum_probs=297.0

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010292           84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTK  161 (513)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  161 (513)
                      .+..++..+.. .++..++...+.++.    +..|+..++..+...+  .++.+.|..+|+.+..     .+++..+++.
T Consensus        86 ~~~~~~~~~~~-~g~~~~A~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~  155 (597)
T 2xpi_A           86 YLRLWRHDALM-QQQYKCAAFVGEKVL----DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-----YNRSSACRYL  155 (597)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-----GGTCHHHHHH
T ss_pred             HHHHHHHHHHH-ccCchHHHHHHHHHH----hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-----cccchhHHHH
Confidence            34455555433 345566666665543    3356667777666666  4577788888876533     3567888888


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhc---------------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----
Q 010292          162 GIKFAGRINNVDLAADLFAEAANK---------------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN----  221 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~---------------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g----  221 (513)
                      ++.+|.+.|++++|.++|+++...               +.+ +..+|+.++.+|.+.|++++|+++|++|.+...    
T Consensus       156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  235 (597)
T 2xpi_A          156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE  235 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence            888888888888888888843222               122 477888888888888888888888888765410    


Q ss_pred             -----------------------------------------------------------------CCCCHHHHHHHHHHH
Q 010292          222 -----------------------------------------------------------------ISPSIVTYNTLISVF  236 (513)
Q Consensus       222 -----------------------------------------------------------------~~p~~~~~~~li~~~  236 (513)
                                                                                       ..++..+|+.++.+|
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence                                                                             025666677777777


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      .+.|++++|..+|+++.+.+. .+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.++..|.+.|++++|.
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence            777777777777777776543 256667777777777777777777777776432 346788888888888888888888


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292          317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      ++|+++.+.. +.+..+|+.++.+|.+.|++++|.+.++.+.+..+.+...+.  .++.+|.+.|++++|.++|+++.+.
T Consensus       394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL--FLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH--HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH--HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8888887752 346778888888888888888888887777666655554442  5888888888999999888888874


Q ss_pred             CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010292          397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKID  470 (513)
Q Consensus       397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  470 (513)
                      .  +.+..+|+.++..|.+.|++++|.++++++.+.    +..|+  ..+|..++.+|.+.|++++|.++|+++.+.+ +
T Consensus       471 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p  547 (597)
T 2xpi_A          471 F--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T  547 (597)
T ss_dssp             C--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred             C--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence            3  445677888888888999999999888888765    55676  6788888888999999999999998888766 5


Q ss_pred             CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       471 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+..+|..+..+|.+.|++++|.++|+++.+.
T Consensus       548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          548 NDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            57888888889999999999999988888764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-33  Score=283.07  Aligned_cols=373  Identities=9%  Similarity=-0.088  Sum_probs=300.8

Q ss_pred             CchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010292          118 SNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA  195 (513)
Q Consensus       118 p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (513)
                      ++...|..++..+  .++++.|..+|+.+..     ..|+..++..++.+|.+.|++++|..+|+.+... .++..+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~  155 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYL  155 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHH
Confidence            5777888998887  4688999999999875     4468899999999999999999999999998643 248899999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010292          196 LLGAYMYNGLSDKCQSLFRDLKKEA--------------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS---  258 (513)
Q Consensus       196 li~~~~~~g~~~~A~~~~~~m~~~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---  258 (513)
                      ++.+|.+.|++++|+++|+++....              |..++..+|+.++.+|.+.|++++|.++|++|.+.+..   
T Consensus       156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  235 (597)
T 2xpi_A          156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE  235 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence            9999999999999999999643321              23446899999999999999999999999999765421   


Q ss_pred             -------------------------------------------------------------------CCHHHHHHHHHHH
Q 010292          259 -------------------------------------------------------------------PNVFTYNYLIAGY  271 (513)
Q Consensus       259 -------------------------------------------------------------------p~~~~~~~li~~~  271 (513)
                                                                                         ++..+|+.++.+|
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence                                                                               4566667777777


Q ss_pred             HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292          272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      .+.|++++|.++|++|.+.+. .+..++..++.++.+.|++++|.++++.+.+. .+.+..+++.++.+|.+.|++++|.
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHH
Confidence            777777777777777765442 25566777777777777777777777777654 3457788888999999999998888


Q ss_pred             HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010292          352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  431 (513)
                      +.++.+.++.+.+...|.  .++.+|.+.|++++|+++|+++.+..  +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus       394 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          394 RYFSKSSTMDPQFGPAWI--GFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            887777666655555553  58889999999999999999988743  44566788899999999999999999999887


Q ss_pred             cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY----KIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       432 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ... .+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus       470 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          470 LFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            653 36788999999999999999999999998776    66777  7889999999999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.1e-32  Score=271.21  Aligned_cols=204  Identities=13%  Similarity=0.136  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCC---------
Q 010292          137 ALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGL---------  205 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~---------  205 (513)
                      +..+...+++..   .... ...++.+|.+|++.|++++|+++|++|.+.|++ |..+||+||.+|++.+.         
T Consensus         9 ~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            9 SENLSRKAKKKA---IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             HHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            334444444332   3333 346889999999999999999999999999994 99999999999998765         


Q ss_pred             hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010292          206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ  285 (513)
Q Consensus       206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  285 (513)
                      +++|.++|++|... |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|+
T Consensus        86 l~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           86 LSRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            68899999999986 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292          286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (513)
                      +|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=1e-30  Score=257.19  Aligned_cols=206  Identities=15%  Similarity=0.118  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 010292          173 DLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL---------  241 (513)
Q Consensus       173 ~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~---------  241 (513)
                      ..+..+.+++.+++..  +...++.+|.+|++.|++++|+++|++|.+. |++||..|||+||.+|++.+.         
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            4456666777777764  3457899999999999999999999999987 999999999999999998765         


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL  321 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  321 (513)
                      ++.|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc
Q 010292          322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE  380 (513)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  380 (513)
                      |.+.|+.||..+|++||.+|++.|++++|.++++.|++........ ++..++..|+..
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~-T~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS-TFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH-HHHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHHhcC
Confidence            9999999999999999999999998887777666665543332222 345677777654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=2.5e-25  Score=214.77  Aligned_cols=357  Identities=10%  Similarity=-0.063  Sum_probs=301.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|.+.+..+.+.    .|.+...+..+...+.+.|++++|...++...+..+.+..+|..+...|.+.|++++|+
T Consensus        12 ~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~   87 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            56888899988877664    34467777888888899999999999999988877668999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      +.|+++.+.  .+.+..+|..+..++.+.|++++|...|+++.+... -+...+..+...+...|++++|.++|+++.+.
T Consensus        88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            999999874  234466899999999999999999999999988643 24566777888888999999999999999874


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010292          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      . +-+..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++......+.....+  
T Consensus       165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--  240 (388)
T 1w3b_A          165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH--  240 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH--
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH--
Confidence            3 2247899999999999999999999999998864 34677888999999999999998888776666655544444  


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      ..+...|...|++++|.+.|+++++.  .|.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+++.+...+.+
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence            25888999999999999999999884  34556678999999999999999999999998764 3467889999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .|++++|...++++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.
T Consensus       318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999998764 556888999999999999999999999999864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=9.9e-24  Score=203.51  Aligned_cols=341  Identities=11%  Similarity=0.035  Sum_probs=293.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|..+++...+.    .+.+..+|..+..+|.+.|++++|.+.|+++.+..+.+..+|..+..++.+.|++++|+
T Consensus        46 ~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  121 (388)
T 1w3b_A           46 CRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV  121 (388)
T ss_dssp             TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred             cCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            67889999999877764    45688999999999999999999999999999887668889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          211 SLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +.|+++.+.   .|+ ...+..+...+...|++++|...|+++.+... -+..+|+.+...+.+.|++++|.+.|+++.+
T Consensus       122 ~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  197 (388)
T 1w3b_A          122 QAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             HHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999975   354 56777888999999999999999999998643 3678999999999999999999999999988


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010292          290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL  369 (513)
Q Consensus       290 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  369 (513)
                      .+ +-+...|..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.++...+..+.....+ 
T Consensus       198 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-  274 (388)
T 1w3b_A          198 LD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY-  274 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH-
T ss_pred             cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-
Confidence            54 2247889999999999999999999999988763 34678899999999999999999988887777665544444 


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH
Q 010292          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA  449 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  449 (513)
                       ..+...+.+.|++++|.+.|+++++.  .|.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|.
T Consensus       275 -~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  350 (388)
T 1w3b_A          275 -CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ  350 (388)
T ss_dssp             -HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence             35889999999999999999999985  45567789999999999999999999999998654 335778999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292          450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG  487 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  487 (513)
                      +.|++++|...|+++.+.. +-+...|..+...+...|
T Consensus       351 ~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          351 QQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence            9999999999999999764 446677777777776655

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.8e-21  Score=191.60  Aligned_cols=339  Identities=9%  Similarity=0.001  Sum_probs=249.0

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      +.+...+..+...+.+.|++++|.++|+++.+..+.+..+|..+..+|...|++++|++.|+++.+.  -+.+..++..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence            3456677777778888888888888888887766557778888888888888888888888888764  23456777888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHH------------HHHHHccCHHHHHHHHHHHHcCCCCCCH
Q 010292          233 ISVFGRLLLVDHMEAAFQEIKDSNLSPN-V---FTYNYLI------------AGYMTAWMWGKVEEIYQMMKAGPVMPDT  296 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~  296 (513)
                      ..++.+.|++++|...|+++.+..  |+ .   ..+..+.            ..+.+.|++++|.++|+++.+.. ..+.
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~  177 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA  177 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence            888888888888888888887653  33 3   4555443            33777888888888888877643 2357


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH------
Q 010292          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN------  370 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------  370 (513)
                      .++..+..++.+.|++++|.++|+.+.+.. +.+..++..+...|...|++++|...++......+.....+..      
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            778888888888888888888888877653 3466777888888888888887777776666554444333210      


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHH
Q 010292          371 ----VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK  444 (513)
Q Consensus       371 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  444 (513)
                          ..+...|...|++++|.+.|+++++.....+.  ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                01378889999999999999999885433222  3468888999999999999999999987654 2367889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CHhHHHHHHHHH
Q 010292          445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA------------YATCG-----QRRKVNQVLGLM  499 (513)
Q Consensus       445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m  499 (513)
                      ..+|...|++++|...|+++.+.. +-+...+..+..+            |...|     +.+++.+.++++
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~  406 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL  406 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999998754 3355666666633            33344     556667777763

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.5e-21  Score=195.54  Aligned_cols=358  Identities=8%  Similarity=-0.078  Sum_probs=294.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++++.|...|+.+.+..     |+...|..+..++.+.|++++|.+.|+++.+.++.+..+|..+..+|.+.|++++|+
T Consensus        19 ~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   93 (514)
T 2gw1_A           19 NKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM   93 (514)
T ss_dssp             TSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hccHHHHHHHHHHHHhcC-----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH
Confidence            568889999999888743     588999999999999999999999999999887668889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-----------------------------------------------------------------
Q 010292          211 SLFRDLKKEANISPS-----------------------------------------------------------------  225 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~-----------------------------------------------------------------  225 (513)
                      ..|+++... + +++                                                                 
T Consensus        94 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
T 2gw1_A           94 FDLSVLSLN-G-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF  171 (514)
T ss_dssp             HHHHHHHHS-S-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred             HHHHHHHhc-C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence            999988754 2 111                                                                 


Q ss_pred             --------------HHHHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHHcc
Q 010292          226 --------------IVTYNTLISVFGR---LLLVDHMEAAFQEIKD-----SNLS--------PNVFTYNYLIAGYMTAW  275 (513)
Q Consensus       226 --------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~li~~~~~~g  275 (513)
                                    ...+......+..   .|++++|..+|+++.+     ..-.        .+..+|..+...+...|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (514)
T 2gw1_A          172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN  251 (514)
T ss_dssp             CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence                          2333333333443   8999999999999987     3111        23567888899999999


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      ++++|.++|+++.+..  |+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...++
T Consensus       252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999998754  448889999999999999999999999998863 3467788999999999999999999888


Q ss_pred             HHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Q 010292          356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR  435 (513)
Q Consensus       356 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  435 (513)
                      ......+.....+  ..+...+...|++++|...++++.+..  +.+..++..+...+...|++++|...++++.+....
T Consensus       329 ~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          329 KAKELDPENIFPY--IQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHTCSSCSHHH--HHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhChhhHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            8777766655444  258889999999999999999998854  334456888999999999999999999988754321


Q ss_pred             -cc----HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          436 -LC----RSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       436 -~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                       ++    ...+..+...+..   .|++++|...++++.+.+ +.+..++..+...|.+.|++++|.+.|++..+..
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence             11    3378889999999   999999999999998865 5577889999999999999999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=3.1e-21  Score=189.81  Aligned_cols=318  Identities=8%  Similarity=-0.062  Sum_probs=258.4

Q ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292          174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      .+...+.+.....+.+...|..+...+.+.|++++|+.+|+++.+.  .+.+..+|..+..++...|++++|...|+++.
T Consensus        10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444555555554558899999999999999999999999999975  35678999999999999999999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH----HHHHHH------------HHHHHhcCChHHHHH
Q 010292          254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT----NTYLLL------------LRGYAHSGNLPRMEK  317 (513)
Q Consensus       254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~  317 (513)
                      +.+. .+..+|..+..+|.+.|++++|.+.|+++.+.  .|+.    ..+..+            ...+...|++++|.+
T Consensus        88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A           88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8754 36889999999999999999999999999984  3553    555555            444889999999999


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      +++.+.+.. +.+..++..+..+|.+.|++++|.+.++...+..+.....+  ..+...|...|++++|.+.|+++....
T Consensus       165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999998863 45788899999999999999999888887766655554444  268899999999999999999998753


Q ss_pred             CCCchHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCc-cc--HhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292          398 TSVTTVRIMRCI------------VSSYFRCNAVDKLANFVKRAESAGWR-LC--RSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       398 ~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                        |.+...+..+            ...|.+.|++++|..+++.+.+.... +.  ...|..+...+.+.|++++|...++
T Consensus       242 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 --QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             --CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence              3344445444            88999999999999999999875422 11  4578889999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      ++.+.. +.+...|..+..+|...|++++|.+.++++.+.
T Consensus       320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            998765 457899999999999999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-19  Score=181.78  Aligned_cols=337  Identities=7%  Similarity=-0.144  Sum_probs=276.3

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...+......+.+.|++++|.+.|+++.+.+ |+...|..+..+|.+.|++++|++.|+++.+.  .+.+..+|..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHH
Confidence            4466777888999999999999999999876 48899999999999999999999999999975  24567899999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCC--------------------------------------------------------
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSP--------------------------------------------------------  259 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p--------------------------------------------------------  259 (513)
                      +.+.|++++|...|+++.+.+...                                                        
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999998764210                                                        


Q ss_pred             ----------------------CHHHHHHHHHHHHH---ccCHHHHHHHHHHHHc-----CCCC--------CCHHHHHH
Q 010292          260 ----------------------NVFTYNYLIAGYMT---AWMWGKVEEIYQMMKA-----GPVM--------PDTNTYLL  301 (513)
Q Consensus       260 ----------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~t~~~  301 (513)
                                            +...+......+..   .|++++|..+|+++.+     ..-.        .+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                  12333333333443   7999999999999887     3111        23578888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010292          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED  381 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  381 (513)
                      +...+...|++++|.++++.+.+....  ...+..+...|...|+++.|...++......+.....+  ..+...+...|
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~  318 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--YHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH--HHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH--HHHHHHHHHhC
Confidence            999999999999999999999887543  88889999999999999998888877776665554444  35888999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010292          382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL  461 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  461 (513)
                      ++++|...|++..+..  +.+...+..+...+...|++++|..+++.+.+... .+...+..+...|.+.|++++|...+
T Consensus       319 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             CTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998854  33455788899999999999999999999887543 25677888999999999999999999


Q ss_pred             HHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHC
Q 010292          462 KEMENYKID-CS----KKTFWIMYYAYAT---CGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       462 ~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~  502 (513)
                      +++.+..-. ++    ...|..+...|..   .|++++|.+.++++.+.
T Consensus       396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            998764311 11    3489999999999   99999999999998765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=4.8e-19  Score=178.31  Aligned_cols=360  Identities=11%  Similarity=-0.009  Sum_probs=277.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|...|+.+.+..    |.+..+|..+..+|.+.|++++|.+.|+++.+.++.+..+|..+..++...|++++|+
T Consensus        38 ~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  113 (537)
T 3fp2_A           38 AKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM  113 (537)
T ss_dssp             TTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            567788888888877653    4578888888999999999999999999988877668888889999999999999999


Q ss_pred             HHHHHHHHhC-----------------------------------CCCCCHHH---------------------------
Q 010292          211 SLFRDLKKEA-----------------------------------NISPSIVT---------------------------  228 (513)
Q Consensus       211 ~~~~~m~~~~-----------------------------------g~~p~~~~---------------------------  228 (513)
                      +.|+.+....                                   ...|+...                           
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (537)
T 3fp2_A          114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY  193 (537)
T ss_dssp             HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence            8886432110                                   00111111                           


Q ss_pred             ---HHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          229 ---YNTLISVFG--------RLLLVDHMEAAFQEIKDSNLSPN-------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       229 ---~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                         ...+...+.        ..|++++|..+|+++.+.... +       ..+|..+...+...|++++|.+.|++..+.
T Consensus       194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~  272 (537)
T 3fp2_A          194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL  272 (537)
T ss_dssp             HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence               111111111        124788999999999875432 2       335777778888999999999999999884


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010292          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                        .|+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|+++.|...++...+..+.....+. 
T Consensus       273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-  348 (537)
T 3fp2_A          273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI-  348 (537)
T ss_dssp             --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH-
T ss_pred             --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence              4678889999999999999999999999998864 456788999999999999999999988877776666554442 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----cHhhHHHHH
Q 010292          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----CRSLYHSKM  445 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li  445 (513)
                       .+...+...|++++|.+.++++.+..  |.+..++..+...+...|++++|.+.++++.+.....     ....+....
T Consensus       349 -~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a  425 (537)
T 3fp2_A          349 -QLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA  425 (537)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence             58899999999999999999998854  4445678889999999999999999999986543211     111233445


Q ss_pred             HHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          446 VMYASQ----------RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       446 ~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..+.+.          |++++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+..
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            667777          99999999999998875 5577889999999999999999999999987653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=2.1e-18  Score=163.86  Aligned_cols=324  Identities=8%  Similarity=-0.040  Sum_probs=222.5

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      |...+..+...+.+.|++++|.+.|+++.+..+.+...|..+...+...|++++|+..|+++.+.  .+-+...|..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence            34556667777777777777777777777766556777777777777777777777777777754  1335567777777


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYL------------IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      .+...|++++|...|++..+....  .+...+..+            ...+...|++++|.++|+++.+.. +.+...+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            777777777777777777764320  133334333            466677777777777777776643 23566777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch----------H
Q 010292          301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL----------N  370 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~  370 (513)
                      .+...+...|++++|.+.++.+.+. .+.+...+..+...|...|++++|...++...+..+.....+.          .
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence            7777777777777777777777765 2345666777777777777777777666655555444433221          0


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV--RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY  448 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  448 (513)
                      ..+...+...|++++|.+.+++..+.....+..  ..+..+...+...|++++|.+.+++..+.. +.+...+..+...|
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            023566888899999999998888754332211  235557778888999999999999887754 22567788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      .+.|++++|...|++..+.+ +-+...+..+..+..
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            89999999999999988765 334555655555544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=1.3e-17  Score=158.41  Aligned_cols=303  Identities=7%  Similarity=-0.049  Sum_probs=251.1

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ++..|..+...+...|++++|++.|+++.+.  .+.+..++..+...+...|++++|...|+++.+... -+...|..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence            4567888899999999999999999999875  345688999999999999999999999999998643 3678999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMP----DTNTYLLL------------LRGYAHSGNLPRMEKIYELVKHHVDGKEFP  332 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  332 (513)
                      ..+...|++++|.+.|++..+.  .|    +...+..+            ...+...|++++|.++++.+.+.. +.+..
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  155 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE  155 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence            9999999999999999999884  35    34444444            578899999999999999998863 45778


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH-----
Q 010292          333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR-----  407 (513)
Q Consensus       333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----  407 (513)
                      .+..+...+...|+++.|...++...+..+.....+  ..+...+...|++++|.+.|++..+.....  ...+.     
T Consensus       156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~  231 (359)
T 3ieg_A          156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQV  231 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCccc--hHHHHHHHHH
Confidence            899999999999999999888887777665555444  258889999999999999999998854433  33232     


Q ss_pred             -------HHHHHHHhcCcHHHHHHHHHHHHhcCCcccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010292          408 -------CIVSSYFRCNAVDKLANFVKRAESAGWRLCR----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF  476 (513)
Q Consensus       408 -------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  476 (513)
                             .+...+...|++++|...++++.+.... +.    ..+..+...+.+.|++++|...+++..+.+ +.+..+|
T Consensus       232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  309 (359)
T 3ieg_A          232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL  309 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence                   2366788999999999999998875533 22    235567788999999999999999998865 4578899


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          477 WIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       477 ~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..+...|...|++++|.+.|++..+..
T Consensus       310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          310 KDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999998753

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.84  E-value=4.5e-21  Score=193.79  Aligned_cols=152  Identities=13%  Similarity=0.081  Sum_probs=123.6

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE--ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      -..+||+||.+||+.|++++|.++|++|.+.  .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            3568999999999999999999999887631  27899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc------HHHHHHHHH
Q 010292          267 LIAGYMTAWMW-GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE------FPLIRAMIC  339 (513)
Q Consensus       267 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~  339 (513)
                      ||+++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+    +++..+++ ..+..|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999999974 789999999999999999999999987766543    33333333 2233333      445566777


Q ss_pred             HHHhcC
Q 010292          340 AYSKCS  345 (513)
Q Consensus       340 ~~~~~g  345 (513)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            777655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=1.2e-17  Score=167.96  Aligned_cols=336  Identities=7%  Similarity=-0.069  Sum_probs=259.7

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...|..+...+.+.|++++|.+.|+++.+..+.+..+|..+..+|.+.|++++|++.|+++.+.  -+.+..++..+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence            4567778888999999999999999999988779999999999999999999999999999975  24567899999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCC------------------------------------CCCHH-----------------
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNL------------------------------------SPNVF-----------------  262 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~------------------------------------~p~~~-----------------  262 (513)
                      +...|++++|...|+.+....-                                    .|+..                 
T Consensus       103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            9999999999999964421100                                    01111                 


Q ss_pred             -------------HHHHHHHHHH--------HccCHHHHHHHHHHHHcCCCCCC--------HHHHHHHHHHHHhcCChH
Q 010292          263 -------------TYNYLIAGYM--------TAWMWGKVEEIYQMMKAGPVMPD--------TNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       263 -------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~~  313 (513)
                                   ....+...+.        ..|++++|..+|+++.+..  |+        ..++..+...+...|+++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~  260 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL  260 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence                         1111111111        1247889999999988743  44        335777778888999999


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                      +|.+.++.+.+..  |+...+..+...|...|+++.|.+.++...+..+.....+  ..+...+...|++++|.+.|++.
T Consensus       261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTY--YHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999998864  4477888899999999999999888877776665554444  25888899999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 010292          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK-----  468 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----  468 (513)
                      .+...  .+...+..+...+...|++++|.++++++.+... .+...+..+...|...|++++|...|+++.+.+     
T Consensus       337 ~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          337 QSLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHCT--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            88543  3445688899999999999999999999887653 356678888999999999999999999887642     


Q ss_pred             CCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHC
Q 010292          469 IDCSKKTFWIMYYAYATC----------GQRRKVNQVLGLMCKN  502 (513)
Q Consensus       469 ~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~  502 (513)
                      .......+..+...+...          |++++|...+++..+.
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence            112233345556777787          9999999999998765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=5.2e-21  Score=193.30  Aligned_cols=160  Identities=11%  Similarity=0.096  Sum_probs=132.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010292          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKD---SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL  301 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  301 (513)
                      -..|||+||++||+.|++++|.++|++|.+   .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            456999999999999999999999988764   58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--------cchHHH
Q 010292          302 LLRGYAHSGNL-PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--------PWLNVL  372 (513)
Q Consensus       302 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~  372 (513)
                      ||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+       +++.++++.+ +..        ..+..+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~-------vL~~Vrkv~P-~f~p~~~~~~~~~t~~L  277 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-------VLKAVHKVKP-TFSLPPQLPPPVNTSKL  277 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH-------HHHHHGGGCC-CCCCCCCCCCCCCCCTT
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH-------HHHHHHHhCc-ccCCCCCCcccccchHH
Confidence            99999999985 789999999999999999999999998776643       4444555432 111        112235


Q ss_pred             HHHHHHhcC---------CHHHHHHHHHH
Q 010292          373 LIRVYAKED---------CLEEMEKSIND  392 (513)
Q Consensus       373 li~~~~~~~---------~~~~a~~~~~~  392 (513)
                      |.+.|.+.+         ..++-.+.|++
T Consensus       278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~  306 (1134)
T 3spa_A          278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEK  306 (1134)
T ss_dssp             THHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred             HHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence            677777655         24566666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=3.7e-17  Score=153.39  Aligned_cols=295  Identities=8%  Similarity=-0.058  Sum_probs=206.7

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      .+.+...+..+...+...|++++|.++|+++.+..+.+...+..++..+...|++++|..+++++.+.  .+.+...|..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence            34456677778888888899999999999888877667778888888888889999999999988875  2445678888


Q ss_pred             HHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292          232 LISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       232 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      +...+...| ++++|...|++..+... .+...|..+...+...|++++|.+.|++..+..- .+...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence            888888888 88889998888887543 3567788888888888888888888888876431 23566667888888888


Q ss_pred             ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010292          311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI  390 (513)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  390 (513)
                      ++++|.+.++...+.. +.+...+..+...|...|++++                                    |...+
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~------------------------------------A~~~~  216 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKT------------------------------------AEKWF  216 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH------------------------------------HHHHH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHH------------------------------------HHHHH
Confidence            8888888888877753 2344455555555555555554                                    44444


Q ss_pred             HHHHhcC-------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292          391 NDAFEHK-------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       391 ~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      ++.....       ..+....++..+...+...|++++|...+++..+.... +...+..+...|.+.|++++|...|++
T Consensus       217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (330)
T 3hym_B          217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHT  295 (330)
T ss_dssp             HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4433311       01223345666777777777777777777777655422 456667777777778888888888877


Q ss_pred             HHhCCCCCCHHHHHHHHHHH-HhcCCH
Q 010292          464 MENYKIDCSKKTFWIMYYAY-ATCGQR  489 (513)
Q Consensus       464 m~~~~~~p~~~~~~~li~~~-~~~g~~  489 (513)
                      ..+.. +.+...+..+..++ ...|+.
T Consensus       296 al~~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          296 ALGLR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             TTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHccC-CCchHHHHHHHHHHHHHhCch
Confidence            77654 34566666666666 344443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=9.9e-18  Score=160.04  Aligned_cols=306  Identities=10%  Similarity=-0.044  Sum_probs=186.5

Q ss_pred             HhcccCCHHHHHH-HHHHHHhccCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010292          165 FAGRINNVDLAAD-LFAEAANKHLK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL  239 (513)
Q Consensus       165 ~~~~~g~~~~a~~-~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~  239 (513)
                      .+.-.|++++|.+ .|++.......    +...+..+...+.+.|++++|+..|+++.+.  .+.+..+|..+..++.+.
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~  111 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAEN  111 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence            3445567777776 66654433221    2455667777777777777777777777753  244566777777777777


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 010292          240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      |++++|...|+++.+... .+..+|..+...+...|++++|.+.|+++....  |+. ..+..+...       ...   
T Consensus       112 g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~---  178 (368)
T 1fch_A          112 EQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AGG---  178 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------
T ss_pred             cCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hhh---
Confidence            777777777777766543 356677777777777777777777777776633  221 111111000       000   


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292          319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                              ..+ ...+. .+..+...|++++|...++...+..+....+..+..+...|...|++++|...|++++..  
T Consensus       179 --------~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  246 (368)
T 1fch_A          179 --------AGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--  246 (368)
T ss_dssp             ----------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             --------hcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence                    000 00000 111122445555555544444443333212222234677777888888888888887774  


Q ss_pred             CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------
Q 010292          399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID--------  470 (513)
Q Consensus       399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------  470 (513)
                      .|.+..++..+...+...|++++|...++++.+... .+...+..+...|.+.|++++|...|+++.+..-.        
T Consensus       247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  325 (368)
T 1fch_A          247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  325 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence            344566788888899999999999999998876542 35677888889999999999999999888764311        


Q ss_pred             --CCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292          471 --CSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       471 --p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                        ....+|..+..+|...|++++|..++++
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence              1267899999999999999999888763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.78  E-value=7.5e-16  Score=144.38  Aligned_cols=267  Identities=9%  Similarity=-0.032  Sum_probs=197.8

Q ss_pred             chhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      +............++.+.|..+++.+.+..    +.+...+..++..+.+.|++++|..+++++.+..+.+...|..+..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   98 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC   98 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            333333333333679999999999887753    3456677778889999999999999999999987778899999999


Q ss_pred             HHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292          199 AYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW  277 (513)
Q Consensus       199 ~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  277 (513)
                      .+...| ++++|.+.|++..+.  .+.+...|..+...+...|++++|...|++..+.... +...+..+...|...|++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence            999999 999999999999864  2445788999999999999999999999999986543 467777799999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC--------CCcHHHHHHHHHHHHhcCChhH
Q 010292          278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD--------GKEFPLIRAMICAYSKCSVTDR  349 (513)
Q Consensus       278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~  349 (513)
                      ++|.+.|++..+.. ..+...+..+...+...|++++|.+.++...+...        +....++..+...|.+.|++++
T Consensus       176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999998854 33578999999999999999999999998876421        2233455555555555555555


Q ss_pred             HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE  395 (513)
Q Consensus       350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  395 (513)
                      |...++...+..+.....+.  .+...|...|++++|.+.|++..+
T Consensus       255 A~~~~~~a~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYS--AIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHH--HHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhhCccchHHHH--HHHHHHHHhccHHHHHHHHHHHHc
Confidence            55544444433333222221  344444555555555555544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.77  E-value=3.7e-17  Score=156.02  Aligned_cols=289  Identities=10%  Similarity=-0.012  Sum_probs=188.7

Q ss_pred             CChHHHHH-HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          132 SRPRLALE-VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       132 ~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      ++.+.|.. .++...+........+...+..+...+.+.|++++|...|+++.+..+.+..+|..+...+...|++++|+
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  118 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI  118 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            45555665 55533222111111135667888999999999999999999999987778999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHcc
Q 010292          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY---------------LIAGYMTAW  275 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g  275 (513)
                      +.|+++.+.  .+.+..++..+...+...|++++|...|+++.+.... +...+..               .+..+...|
T Consensus       119 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (368)
T 1fch_A          119 SALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS  195 (368)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred             HHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence            999999975  2557889999999999999999999999999986532 2222211               233333777


Q ss_pred             CHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010292          276 MWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE  354 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  354 (513)
                      ++++|.++|+++.+.... ++..++..+...+...|++++|.+.++.+.+.. +.+...+..                  
T Consensus       196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~------------------  256 (368)
T 1fch_A          196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK------------------  256 (368)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH------------------
T ss_pred             cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH------------------
Confidence            777777777777663211 136677777777777777777777777766642 223334444                  


Q ss_pred             HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292          355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  434 (513)
                                        +...+...|++++|...|+++++.  .|.+...+..+...|...|++++|...++++.+...
T Consensus       257 ------------------l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          257 ------------------LGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             ------------------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                              444455555555555555555543  233444566666666666666666666666543221


Q ss_pred             cc----------cHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292          435 RL----------CRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       435 ~~----------~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      ..          ....|..+..+|...|++++|..+++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            10          14556666667777777777666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=1.2e-13  Score=137.21  Aligned_cols=339  Identities=10%  Similarity=-0.033  Sum_probs=272.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----  202 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----  202 (513)
                      .++.+.|...|+...+.+      +...+..|-..|..    .++.++|.+.|++..+.|  +...+..|...|..    
T Consensus        56 ~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~  127 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGV  127 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC
Confidence            457888988888877643      67788888888888    899999999999988765  66778888888888    


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 010292          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----A  274 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~  274 (513)
                      .+++++|++.|++.... |   +...+..|...|..    .++.++|...|++..+.|   +...+..+...|..    .
T Consensus       128 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~  200 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE  200 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC
Confidence            78999999999999864 3   67788888888887    789999999999998864   78888888888888    8


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCC
Q 010292          275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSV  346 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~  346 (513)
                      ++.++|.++|++..+.|   +...+..+...|..    .+++++|.+.|+...+.+   +...+..+-..|..    .++
T Consensus       201 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d  274 (490)
T 2xm6_A          201 RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKE  274 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCC
T ss_pred             cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCC
Confidence            99999999999998865   67788888888886    789999999999988864   45566667777776    777


Q ss_pred             hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---c
Q 010292          347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-----DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---A  418 (513)
Q Consensus       347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~  418 (513)
                      .++|.+.++...+.   +.... ...+...|...     +++++|.+.|++..+.+.    ...+..+...|...|   +
T Consensus       275 ~~~A~~~~~~a~~~---~~~~a-~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          275 PLKALEWYRKSAEQ---GNSDG-QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----ATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             HHHHHHHHHHHHTT---TCHHH-HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHSCCHHH
T ss_pred             HHHHHHHHHHHHHc---CCHHH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCccc
Confidence            77666655544332   22222 22466677766     899999999999888642    334666777777756   8


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHh
Q 010292          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRR  490 (513)
Q Consensus       419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~  490 (513)
                      .++|.+++++..+.|   +...+..+...|..    .+++++|...|++..+.|   +...+..|...|.+    .++++
T Consensus       347 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~  420 (490)
T 2xm6_A          347 HKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYV  420 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            899999999998775   56677788888888    899999999999999876   46778889999988    89999


Q ss_pred             HHHHHHHHHHHCCC
Q 010292          491 KVNQVLGLMCKNGY  504 (513)
Q Consensus       491 ~A~~~~~~m~~~g~  504 (513)
                      +|.++|++..+.|.
T Consensus       421 ~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          421 QAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999887763

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.75  E-value=1.9e-16  Score=151.04  Aligned_cols=235  Identities=9%  Similarity=-0.066  Sum_probs=152.9

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +...+..+...+.+.|++++|.++|+++.+..+.+..+|..+...|...|++++|++.|+++.+.  .+.+..+|..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence            44557888888899999999999999998877668889999999999999999999999998875  2445788899999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLS---------PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLR  304 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~  304 (513)
                      ++...|++++|...|+++.+....         .....+..+...+.+.|++++|.++|+++.+..-. .+..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            999999999999999988864211         01223344567778888888888888888774311 25777888888


Q ss_pred             HHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHH
Q 010292          305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE  384 (513)
Q Consensus       305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  384 (513)
                      .+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...++...+..+.....+  ..+..+|...|+++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR--YNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH--HHHHHHHHHCCCHH
Confidence            8888888888888888877652 23455555555555555555544444443333322222222  12344444444444


Q ss_pred             HHHHHHHHHH
Q 010292          385 EMEKSINDAF  394 (513)
Q Consensus       385 ~a~~~~~~~~  394 (513)
                      +|...|++.+
T Consensus       299 ~A~~~~~~al  308 (365)
T 4eqf_A          299 EAVSNFLTAL  308 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.75  E-value=8e-17  Score=153.63  Aligned_cols=266  Identities=9%  Similarity=-0.077  Sum_probs=179.4

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...|..+...+.+.|++++|+++|+++.+.  .+.+..+|..+...+.+.|++++|+..|+++.+... .+..+|..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence            5566899999999999999999999999975  355788999999999999999999999999988643 3688999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHH
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMPD-----------TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRA  336 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~  336 (513)
                      ..|.+.|++++|.+.|+++.+..  |+           ...+..+...+...|++++|.++++++.+..... +..++..
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            99999999999999999987632  22           2233445667777777777777777776653211 3444443


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010292          337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC  416 (513)
Q Consensus       337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  416 (513)
                                                          +...|...|++++|.+.|++.++..  |.+..+|..+...|...
T Consensus       219 ------------------------------------l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~  260 (365)
T 4eqf_A          219 ------------------------------------LGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANG  260 (365)
T ss_dssp             ------------------------------------HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred             ------------------------------------HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence                                                4445555566666666666655532  33455566666667777


Q ss_pred             CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHh
Q 010292          417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI-----------DCSKKTFWIMYYAYAT  485 (513)
Q Consensus       417 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~  485 (513)
                      |++++|...++++.+... .+...|..+...|.+.|++++|...|+++.+..-           ..+...|..+..++..
T Consensus       261 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (365)
T 4eqf_A          261 DRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL  339 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence            777777777766665432 2355666666677777777777777766654320           0135677777777777


Q ss_pred             cCCHhHHHHHHHH
Q 010292          486 CGQRRKVNQVLGL  498 (513)
Q Consensus       486 ~g~~~~A~~~~~~  498 (513)
                      .|+.+.+.++.++
T Consensus       340 ~g~~~~a~~~~~~  352 (365)
T 4eqf_A          340 MDQPELFQAANLG  352 (365)
T ss_dssp             HTCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHh
Confidence            7777777666543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.73  E-value=1.1e-15  Score=143.13  Aligned_cols=96  Identities=10%  Similarity=-0.084  Sum_probs=53.1

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+.+.|++++|..+|+++.+..+.+...|..+...+...|++++|.+.|+++.+.  .+.+..++..+...+.
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT  100 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHH
Confidence            34444555555566666666666655544445555555555566666666666666655543  1234455555555555


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 010292          238 RLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~  255 (513)
                      ..|++++|...++++.+.
T Consensus       101 ~~~~~~~A~~~~~~~~~~  118 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLS  118 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            555555555555555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.73  E-value=1.7e-15  Score=141.73  Aligned_cols=263  Identities=11%  Similarity=-0.017  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      ..|..+...+...|++++|+.+|+++.+.  .+.+...+..+..++...|++++|...|+++.+... .+..+|..+...
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~   98 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS   98 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence            34444555555555555555555555543  123444555555555555555555555555554322 244555555555


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhccCCCcHHHH
Q 010292          271 YMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLL--------------LR-GYAHSGNLPRMEKIYELVKHHVDGKEFPLI  334 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  334 (513)
                      +...|++++|.+.++++.+..  |+ ...+..+              .. .+...|++++|.++++.+.+.. +.+...+
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  175 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH  175 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence            555555555555555554421  11 1111111              11 2444555555555555555442 2244555


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010292          335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF  414 (513)
Q Consensus       335 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  414 (513)
                      ..+...|...|++++|...++...+..+.....+  ..+...+...|++++|.+.|++..+..  +.+...+..+...|.
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW--NKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            5555555555555555555444444333332222  245666666677777777776666532  334455666677777


Q ss_pred             hcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292          415 RCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       415 ~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      ..|++++|.+.++++.+.....           +...|..+..++.+.|++++|..++++
T Consensus       252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            7777777777777665433221           355666777777777777777777653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=3.1e-13  Score=135.56  Aligned_cols=217  Identities=7%  Similarity=-0.004  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292          279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-------SGNLP-------RMEKIYELVKHHVDGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (513)
                      +|..+|++..... .-+...|......+.+       .|+++       +|.+++++..+.-.+.+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            4455555555421 1245566666665554       57766       7777777777532344567777777777777


Q ss_pred             CChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHhcCcHHHH
Q 010292          345 SVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS-YFRCNAVDKL  422 (513)
Q Consensus       345 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a  422 (513)
                      |++++|..+++...+..+.+. ..|.  .++..+.+.|++++|.++|++.++....  ....|...... +...|+.++|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYI--QYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHH--HHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHH
Confidence            877777777766666544432 2332  4556666777788888888777764322  22222222211 2357778888


Q ss_pred             HHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK-IDCS--KKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       423 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...+......|+.+.+.++++++
T Consensus       411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888887765431 245667777777777788888888888777653 1222  336767777777778888887777776


Q ss_pred             HH
Q 010292          500 CK  501 (513)
Q Consensus       500 ~~  501 (513)
                      .+
T Consensus       490 ~~  491 (530)
T 2ooe_A          490 FT  491 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.72  E-value=4.4e-13  Score=133.05  Aligned_cols=320  Identities=8%  Similarity=-0.054  Sum_probs=261.4

Q ss_pred             CHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCH
Q 010292          155 TKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       155 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      +...+..+-..|..    .+++++|.+.|++..+.|  +...+..|...|..    .++.++|++.|++.... |   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence            77788888888877    899999999999988764  67788899999999    89999999999999874 3   77


Q ss_pred             HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292          227 VTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       227 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                      ..+..|...|..    .+++++|...|++..+.|   +...+..|...|..    .+++++|.++|++..+.|   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            788888888888    889999999999999875   67788888888887    789999999999998865   7888


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcccchH
Q 010292          299 YLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       299 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      +..+...|..    .++.++|.+.|+...+.+   +...+..+...|..    .++.++|...++...+.   +.... .
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a-~  258 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---GNSIA-Q  258 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---TCHHH-H
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHH-H
Confidence            8899999988    899999999999988864   55667778888875    67777666665544332   22222 2


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCCcccHhhH
Q 010292          371 VLLIRVYAK----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-----NAVDKLANFVKRAESAGWRLCRSLY  441 (513)
Q Consensus       371 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~  441 (513)
                      ..+...|..    .++.++|.+.|++..+.+    +...+..+...|...     ++.++|...+++..+.+   +...+
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~  331 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ  331 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence            235566666    789999999999988754    234566677788877     89999999999998876   34566


Q ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010292          442 HSKMVMYASQR---RVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       442 ~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  503 (513)
                      ..+...|...|   ++++|++.|++..+.|   +...+..|...|..    .+++++|.++|++..+.|
T Consensus       332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            77777777756   8899999999999875   56788889999998    899999999999998876

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.72  E-value=8.3e-18  Score=157.92  Aligned_cols=305  Identities=11%  Similarity=0.040  Sum_probs=139.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++.+.|.++++.+         ++..+|..+..++.+.|++++|++.|.+.     +|...|..++.++...|++++|+.
T Consensus        17 ~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           17 GNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            3567787777643         24569999999999999999999999653     367799999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      .++..++.   .++..+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|.+++|..+|..+    
T Consensus        83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            77776653   4667889999999999999999988885       277789999999999999999999999987    


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                           ..|..+..++.+.|++++|.+.+..+      .+..+|..++.+|...|+++.|..+..   .+.   ..+....
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l---~L~---~~ad~l~  211 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL---HIV---VHADELE  211 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT---TTT---TCHHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH---HHH---hCHhhHH
Confidence                 36999999999999999999999887      378899999999999999998855422   111   1122122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCcc------cHhhHHH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC--NAVDKLANFVKRAESAGWRL------CRSLYHS  443 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~------~~~~~~~  443 (513)
                      .++..|.+.|++++|..+++..+...  +....+|+-+.-+|++-  +++.+.++.|.  .+.+++|      +...|.-
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence            58889999999999999999888643  44567777777777764  34444444444  2334444      4667888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010292          444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR  490 (513)
Q Consensus       444 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  490 (513)
                      ++-.|...++++.|...   |.+.  +++.---..+.....+..+.+
T Consensus       288 ~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~e  329 (449)
T 1b89_A          288 LVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVE  329 (449)
T ss_dssp             HHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred             HHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHH
Confidence            88899999999988763   4433  233222333444445555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=2.1e-15  Score=138.39  Aligned_cols=278  Identities=8%  Similarity=0.003  Sum_probs=186.5

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          163 IKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      |+-....|++..|+..++......+.+ ....-.+.++|...|++++|+..++..     -.|+..++..+...+...|+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence            344456688888888777655433222 345566677888888888887755431     24566777777788888888


Q ss_pred             hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .++|++.++++...+..| +...+..+...+.+.|++++|++.+++      ..+...+..+...+.+.|++++|.+.++
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888888888887766445 445555566777788888888888776      3466777777788888888888888888


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010292          321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV  400 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  400 (513)
                      .+.+..  |+... ..+..                                ..+..+...|++++|..+|+++.+.  .|
T Consensus       155 ~~~~~~--p~~~~-~~l~~--------------------------------a~~~l~~~~~~~~eA~~~~~~~l~~--~p  197 (291)
T 3mkr_A          155 KMQDQD--EDATL-TQLAT--------------------------------AWVSLAAGGEKLQDAYYIFQEMADK--CS  197 (291)
T ss_dssp             HHHHHC--TTCHH-HHHHH--------------------------------HHHHHHHCTTHHHHHHHHHHHHHHH--SC
T ss_pred             HHHhhC--cCcHH-HHHHH--------------------------------HHHHHHhCchHHHHHHHHHHHHHHh--CC
Confidence            777653  33211 11111                                1222333457888888888888875  35


Q ss_pred             chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 010292          401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE-MESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                      .+..+++.+..++.+.|++++|...++++.+.... +..++..++..+...|+.++ +.++++++.+.+  |+..   .+
T Consensus       198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~---~~  271 (291)
T 3mkr_A          198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHP---FI  271 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCH---HH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCh---HH
Confidence            56777888888888888888888888888765532 56777778888888888865 567888887654  3322   23


Q ss_pred             HHHHHhcCCHhHHHH
Q 010292          480 YYAYATCGQRRKVNQ  494 (513)
Q Consensus       480 i~~~~~~g~~~~A~~  494 (513)
                      .+...+.+.++++..
T Consensus       272 ~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          272 KEYRAKENDFDRLVL  286 (291)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344455555555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.72  E-value=5.9e-17  Score=152.20  Aligned_cols=327  Identities=8%  Similarity=-0.030  Sum_probs=151.3

Q ss_pred             CchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010292          118 SNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA  195 (513)
Q Consensus       118 p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (513)
                      ++..+|..+.++..  ++.+.|.+.|..         .+|..+|..++..+...|++++|+..++...+ ..+++.+.+.
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~   99 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETE   99 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHH
Confidence            44457888877774  467778888853         24777999999999999999999997776665 3556788999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010292          196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW  275 (513)
Q Consensus       196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  275 (513)
                      ++.+|.+.|+++++.++++        .|+..+|+.+...|...|.+++|...|..+         ..|..+..++.+.|
T Consensus       100 Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg  162 (449)
T 1b89_A          100 LIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG  162 (449)
T ss_dssp             ---------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred             HHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence            9999999999999887773        377789999999999999999999999987         36999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      ++++|.+.++++      .++.+|..++.+|...|+++.|......+.     .++.-...++..|.+.|.++++...++
T Consensus       163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe  231 (449)
T 1b89_A          163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLE  231 (449)
T ss_dssp             CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999998      278899999999999999999966554322     233435578899999999998777766


Q ss_pred             HHHhCCCCCcccchHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010292          356 LMRLIPEKEYRPWLNVLLIRVYAKE--DCLEEMEKSINDAFEHKTSVT------TVRIMRCIVSSYFRCNAVDKLANFVK  427 (513)
Q Consensus       356 ~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~  427 (513)
                      .--.+.+.....++  -+.-.|++-  +++.+.++.|.   .+-..|+      ...+|..+.-.|.+.++++.|.... 
T Consensus       232 ~aL~le~ah~~~ft--el~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm-  305 (449)
T 1b89_A          232 AALGLERAHMGMFT--ELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM-  305 (449)
T ss_dssp             HHTTSTTCCHHHHH--HHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH-
T ss_pred             HHhCCcHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH-
Confidence            66555544444443  344444443  45555555553   2212221      3456777777888888888776632 


Q ss_pred             HHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010292          428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       428 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                        .++  .++..--..+.+...+-.+.+--.+...=..+  -.|..  .+-|+.++...=++..+.++|
T Consensus       306 --~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~r~v~~~  366 (449)
T 1b89_A          306 --MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHTRAVNYF  366 (449)
T ss_dssp             --HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHHHHHHHH
T ss_pred             --HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcHHHHHHH
Confidence              222  12222233445555666665544444333332  23432  555555554444444444444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.71  E-value=1.8e-13  Score=137.30  Aligned_cols=373  Identities=9%  Similarity=-0.004  Sum_probs=263.5

Q ss_pred             chhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHH
Q 010292          119 NGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL  197 (513)
Q Consensus       119 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li  197 (513)
                      +...|..++... .++.+.|..+|+.+.+.    .|.+...|..++..+.+.|++++|..+|++..... |+...|...+
T Consensus        12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIREAQNQPIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence            455777777654 46888999999988764    56688899999999999999999999999999875 4777888777


Q ss_pred             HHH-HHcCChHHHHH----HHHHHHHhCCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHH
Q 010292          198 GAY-MYNGLSDKCQS----LFRDLKKEANISP-SIVTYNTLISVFGR---------LLLVDHMEAAFQEIKDSNLSPNVF  262 (513)
Q Consensus       198 ~~~-~~~g~~~~A~~----~~~~m~~~~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~  262 (513)
                      ... ...|+.++|.+    +|+......|..| +...|...+....+         .|+++.|..+|++..+........
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            533 45678777765    7777766546554 46678877776654         688999999999998731111124


Q ss_pred             HHHHHHHHHH-------------HccCHHHHHHHHHHHH------cCC---CCCC--------HHHHHHHHHHHHhc---
Q 010292          263 TYNYLIAGYM-------------TAWMWGKVEEIYQMMK------AGP---VMPD--------TNTYLLLLRGYAHS---  309 (513)
Q Consensus       263 ~~~~li~~~~-------------~~g~~~~a~~~~~~m~------~~g---~~p~--------~~t~~~ll~~~~~~---  309 (513)
                      .|.......-             +.+++++|..+++++.      +..   +.|+        ...|...+......   
T Consensus       167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~  246 (530)
T 2ooe_A          167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR  246 (530)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence            4444333211             2345677777777632      221   3444        24555555433322   


Q ss_pred             -CCh----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHh-CCCCCcccch
Q 010292          310 -GNL----PRMEKIYELVKHHVDGKEFPLIRAMICAYSK-------CSVTD-------RIKKIEALMRL-IPEKEYRPWL  369 (513)
Q Consensus       310 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~  369 (513)
                       ++.    ..+..+|++.... .+.+...|..+...+.+       .|+++       .|..+++...+ ..+.....|.
T Consensus       247 ~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~  325 (530)
T 2ooe_A          247 TEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF  325 (530)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence             232    3677889888876 34577888888888775       68876       55665554443 3333343442


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH-H
Q 010292          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV-M  447 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~  447 (513)
                        .++..+...|++++|..+|+++++..  |.+ ..+|...+..+.+.|++++|.++|++..+.... +...|..... .
T Consensus       326 --~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~  400 (530)
T 2ooe_A          326 --AYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME  400 (530)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred             --HHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence              57888889999999999999999853  333 347888888899999999999999999865321 2233322222 2


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       448 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      +...|++++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            346899999999999988764 4468899999999999999999999999998874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=6.9e-15  Score=134.94  Aligned_cols=223  Identities=12%  Similarity=0.074  Sum_probs=137.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHhcC
Q 010292          267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKEFPLIRAMICAYSKCS  345 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g  345 (513)
                      +..+|...|++++|...++..    -.|+..++..+...+...++.++|.+.++++...+. +.+...+..+...|...|
T Consensus        40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g  115 (291)
T 3mkr_A           40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ  115 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence            334444444444444433221    123344444444444444444444444444443332 223333333444444444


Q ss_pred             ChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHH
Q 010292          346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF  425 (513)
Q Consensus       346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  425 (513)
                      ++++|.+.++   +  +.+...  ...++..|.+.|++++|.+.|+++.+............+.+..+...|++++|..+
T Consensus       116 ~~~~Al~~l~---~--~~~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~  188 (291)
T 3mkr_A          116 NPDAALRTLH---Q--GDSLEC--MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI  188 (291)
T ss_dssp             CHHHHHHHHT---T--CCSHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             CHHHHHHHHh---C--CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            4443333322   1  111111  22467778888888888888888887543221122223344445566999999999


Q ss_pred             HHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHHC
Q 010292          426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK-VNQVLGLMCKN  502 (513)
Q Consensus       426 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~  502 (513)
                      |+++.+.. +.+...++.+..++.+.|++++|...|++..+.+ +-+..++..++..+...|+.++ +.++++++.+.
T Consensus       189 ~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          189 FQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99998774 4578889999999999999999999999998876 5688899999999999999976 57888888754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=5.9e-14  Score=138.69  Aligned_cols=366  Identities=9%  Similarity=0.008  Sum_probs=184.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc-----C---CCHhH
Q 010292          126 LMKQLGSRPRLALEVLNWRRRQ-----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-----L---KTIGT  192 (513)
Q Consensus       126 ~l~~~~~~~~~a~~~~~~~~~~-----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~---~~~~~  192 (513)
                      .+....++.+.|++.|+...+.     .....+-...+|+.+..+|...|++++|...+++..+..     .   ....+
T Consensus        59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~  138 (472)
T 4g1t_A           59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL  138 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence            3444456777777777766553     111122345567777777777777777777777665421     1   12455


Q ss_pred             HHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010292          193 YNALLGAYMYN--GLSDKCQSLFRDLKKEANISPS-IVTYNTLISV---FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       193 ~~~li~~~~~~--g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      ++.+..++...  +++++|++.|++..+.   .|+ ...+..+..+   +...++.++|++.+++..+... .+..++..
T Consensus       139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~  214 (472)
T 4g1t_A          139 DCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVL  214 (472)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHH
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHH
Confidence            55555555543  3577777777777653   343 3344433333   3445666777777777665432 24555555


Q ss_pred             HHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292          267 LIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       267 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                      +...+..    .|++++|.+++++..... ..+...+..+...+...|++++|.+.+++..+.. +.+..++..+..+|.
T Consensus       215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            5444443    345667777777766532 2246667777777777777777777777776652 334555665555554


Q ss_pred             hcCC-------------------hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010292          343 KCSV-------------------TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV  403 (513)
Q Consensus       343 ~~g~-------------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  403 (513)
                      ..+.                   .+.+...++...+..+.....+.  .+...|...|++++|++.|++.+.....+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~  370 (472)
T 4g1t_A          293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS--ILASLHALADQYEEAEYYFQKEFSKELTPVAK  370 (472)
T ss_dssp             HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH--HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh--hHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence            3211                   12222222222333333333331  35566666666666666666665533222111


Q ss_pred             -HHHHHHHH-HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          404 -RIMRCIVS-SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY  481 (513)
Q Consensus       404 -~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~  481 (513)
                       .++..+.. .....|+.++|+..+++..+..  |+....         .+..+.+.++++.....+ +.+..+|..+..
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~  438 (472)
T 4g1t_A          371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSKN-GADSEALHVLAF  438 (472)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHHC-C-CTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence             11122211 1234566666666666655433  221111         111233344444444444 556789999999


Q ss_pred             HHHhcCCHhHHHHHHHHHHHCCC-CCCCCCC
Q 010292          482 AYATCGQRRKVNQVLGLMCKNGY-DVPVNAF  511 (513)
Q Consensus       482 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~  511 (513)
                      .|...|++++|++.|++..+.|- .|+..++
T Consensus       439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          439 LQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHCC----------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            99999999999999999988753 3555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.1e-13  Score=124.52  Aligned_cols=225  Identities=9%  Similarity=-0.025  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CCCC----HHHH
Q 010292          226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VMPD----TNTY  299 (513)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~  299 (513)
                      ...|..+...+...|++++|...|++..+..  .+..+|..+..++...|++++|.+.+++..+..  ..++    ..+|
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3566777777777888888888887777765  567777777777888888888888777766522  1112    4667


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHh
Q 010292          300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK  379 (513)
Q Consensus       300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  379 (513)
                      ..+...+...|++++|.+.++...+..  |+..       .+.                                    .
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~------------------------------------~  117 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILT------------------------------------K  117 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHH------------------------------------H
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHH------------------------------------H
Confidence            777777777777777777777766642  2321       222                                    3


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010292          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES  459 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  459 (513)
                      .|++++|.+.++++..  ..+.+...+..+...+...|++++|...++++.+.... +...|..+...|.+.|++++|..
T Consensus       118 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~  194 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA  194 (258)
T ss_dssp             HHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence            3444455555544444  22333444555555555555555555555555443321 34445555555555555555555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .+++..+.+ +.+...|..+..+|.+.|++++|.+.+++..+
T Consensus       195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            555555443 23345555555555555555555555555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=1.6e-13  Score=120.09  Aligned_cols=196  Identities=13%  Similarity=0.003  Sum_probs=150.0

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      |++...+..+...+.+.|++++|...|++..+..+.+...|..+...+.+.|++++|+..|++..+.  -+-+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            4577788888888999999999999999998887778889999999999999999999999998875  24456788888


Q ss_pred             HHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010292          233 ISVFGRL-----------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL  301 (513)
Q Consensus       233 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  301 (513)
                      ..++.+.           |++++|+..|++..+... -+...|..+...+...|++++|+..|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            8888888           888888888888887543 256778888888888888888888888887765  57788888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010292          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE  354 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  354 (513)
                      +..++...|++++|...|+...+.. +.+...+..+...+...|++++|...+
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~  208 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAA  208 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            8888888888888888888887753 345666777777777777766655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.61  E-value=1.3e-11  Score=129.48  Aligned_cols=323  Identities=11%  Similarity=0.067  Sum_probs=194.9

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL  196 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  196 (513)
                      .|+.+.+..-.-...+.+.+|+++++.+.... ..+.-+...-+.++....+. +..+..+..+.....      ...-+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~eI 1055 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPDI 1055 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHHH
Confidence            44554444444445677777888887776332 11223445555566655555 445555555544321      12335


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|.+++|.++|++...      .....+.++.   ..+++++|.++.++..      +..+|..+..++.+.|+
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence            6667777888888888877521      2223333433   5667788877777552      46677788888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  356 (513)
                      +++|.+.|.+.      -|...|..++.+|.+.|++++|.+.+....+...  +....+.++.+|.+.++++..+..   
T Consensus      1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A         1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred             HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH---
Confidence            88888888553      3667777788888888888888888877666542  222233477778887766643322   


Q ss_pred             HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010292          357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL  436 (513)
Q Consensus       357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  436 (513)
                      .   ...+...+ . .+...|...|++++|..+|...          ..|..+...+++.|++++|.+.+++..      
T Consensus      1190 I---~~~n~ad~-~-~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A         1190 I---NGPNNAHI-Q-QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred             H---hCCCHHHH-H-HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence            1   12222222 2 3777777778888888887663          247777888888888888888777652      


Q ss_pred             cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      +..+|..+-.+|...|++..|......     +..+...+..++..|.+.|.+++|+.+++..
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            335555555555555555555554432     2223344555555566666666666555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.7e-13  Score=121.91  Aligned_cols=225  Identities=13%  Similarity=0.034  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYN  230 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~  230 (513)
                      ...+..+...+...|++++|.+.|++..+.. .+...|..+...+...|++++|++.|++..+.. ...++    ..+|.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3456667777777788888888888777766 677777777777888888888888877776531 01112    46677


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      .+...+.+.|++++|...|++..+..  |+.       ..+.+.|++++|.+.++++.... ..+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence            77777777777777777777777642  342       33555667777777777776632 113556666777777777


Q ss_pred             ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010292          311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI  390 (513)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  390 (513)
                      ++++|.+.++.+.+.. +.+..++..+...                                    |...|++++|.+.|
T Consensus       154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~------------------------------------~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAA------------------------------------LAKLMSFPEAIADC  196 (258)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------------------------------------HHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-cccHHHHHHHHHH------------------------------------HHHhCCHHHHHHHH
Confidence            7777777777766642 2234444444444                                    44445555555555


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292          391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  430 (513)
                      ++.++..  |.+...+..+...+...|++++|.+.+++..
T Consensus       197 ~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          197 NKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5544422  2234445555555555555555555555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.59  E-value=2.5e-11  Score=127.48  Aligned_cols=349  Identities=11%  Similarity=0.074  Sum_probs=240.3

Q ss_pred             HHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010292           90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI  169 (513)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~  169 (513)
                      ..++-..+...+++..+++.+.       .......++. -.+.++.|.++.+.+         -+..+|..+..++.+.
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie-~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIE-HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH-HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Confidence            3444555667777777777542       1122233333 234677777776633         1577888888889999


Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010292          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF  249 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  249 (513)
                      |++++|.+.|.+.     .+...|..++.+|.+.|++++|.+.|...++.   .++....+.++.+|++.+++++...+.
T Consensus      1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred             CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH
Confidence            9999998888653     37778888888999999999999998877653   244444445888888888887544332


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                          +   .++...|..+...|...|++++|..+|...         ..|..+...+++.|++++|.+.+++.      .
T Consensus      1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A         1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred             ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence                2   256677777888888899999999999884         37888899999999999998888766      3


Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010292          330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI  409 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  409 (513)
                      +..+|..+-.+|...|++..|..+..-+.      ..+.....++..|.+.|.+++|+.+++..+...  +....+|+-+
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftEL 1320 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTEL 1320 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHH
Confidence            55778888888888887777666532110      111112358889999999999999998877643  4456677666


Q ss_pred             HHHHHhc--CcHHHHHHHHHHHHhcCCc------ccHhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCC
Q 010292          410 VSSYFRC--NAVDKLANFVKRAESAGWR------LCRSLYHSKMVMYASQRRVEEMESV-------------LKEMENYK  468 (513)
Q Consensus       410 i~~~~~~--~~~~~a~~~~~~m~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~~  468 (513)
                      ...|++.  +++.++.++|..-  .++.      -+...|.-++-.|.+.|+++.|...             |.+...  
T Consensus      1321 aiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A         1321 AILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence            6666664  4555555555532  2222      2466789999999999999999832             222221  


Q ss_pred             CCCCHHHHHHHHHHHHhcC---------------CHhHHHHHHH
Q 010292          469 IDCSKKTFWIMYYAYATCG---------------QRRKVNQVLG  497 (513)
Q Consensus       469 ~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~  497 (513)
                      -..|...|...+..|...+               +++.+.++|.
T Consensus      1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            1356777777777777666               6666666665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=2.5e-12  Score=112.91  Aligned_cols=200  Identities=14%  Similarity=-0.026  Sum_probs=139.9

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +...+..+...+...|++++|.+.|++..+..+.+...|..+...|...|++++|.+.|+++.+.  .+.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence            45667777777888888888888888877766557778888888888888888888888887764  2446677777888


Q ss_pred             HHHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292          235 VFGRL-LLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       235 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~  312 (513)
                      .+... |++++|...|+++.+.+..|+ ...|..+...+.+.|++++|.+.|+++.+.. ..+...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            88888 888888888888776322233 5667777777888888888888888776643 12467777777778888888


Q ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      ++|.++++.+.+.....+...+..+...+...|+.+.+...++.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            888888877766532134444555555555555555554444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.56  E-value=1.9e-12  Score=116.14  Aligned_cols=165  Identities=10%  Similarity=-0.020  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+...|++++|.+.|+++.+....+...|..+...|...|++++|++.|+++.+.  .+.+...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHH
Confidence            344455555555666666666666655544445555556666666666666666666665543  123445555555555


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      ...|++++|...|+++.+.+..| +...|..+...+.+.|++++|.+.|++..+.. ..+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            56666666666665555422223 33445555555555556666665555554432 11345555555555555555555


Q ss_pred             HHHHHHHHh
Q 010292          316 EKIYELVKH  324 (513)
Q Consensus       316 ~~~~~~~~~  324 (513)
                      ..+++.+.+
T Consensus       195 ~~~~~~~~~  203 (252)
T 2ho1_A          195 RQYYDLFAQ  203 (252)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            555555554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.56  E-value=1.3e-11  Score=121.84  Aligned_cols=359  Identities=9%  Similarity=-0.103  Sum_probs=229.2

Q ss_pred             HHhhcCCChhHHHHHHhhhCCc-----cccccCc-hhHHHHHHHHH--cCChHHHHHHHHHHHHcCC----CCCCCCHHH
Q 010292           91 ELLANVDDLDKVFRVLDEKGSC-----LFRRHSN-GYAFVELMKQL--GSRPRLALEVLNWRRRQAG----YGTPMTKEE  158 (513)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~-~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~----~g~~~~~~~  158 (513)
                      .+....++-.+++..+.+...-     .....|+ ..+|..+-..+  .++.+.|...++...+...    ........+
T Consensus        59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~  138 (472)
T 4g1t_A           59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL  138 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence            3334456677777777664211     0111232 33454443333  5789999999998876421    111224566


Q ss_pred             HHHHHHHhcc--cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHH---HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          159 YTKGIKFAGR--INNVDLAADLFAEAANKHLKTIGTYNALLGAY---MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       159 ~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      +..+..++.+  .+++++|++.|++..+..+.+...+..+..++   ...++.++|++.|++..+.  -+.+...+..+.
T Consensus       139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~  216 (472)
T 4g1t_A          139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHH
Confidence            7666555554  45799999999999988776777777666553   4567889999999998864  244566776666


Q ss_pred             HHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHh
Q 010292          234 SVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAH  308 (513)
Q Consensus       234 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~  308 (513)
                      ..+..    .|++++|.+.+++...... .+..++..+...|.+.|++++|.+.|++..+.  .| +..++..+...|..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence            65554    4678899999999887654 47788999999999999999999999998874  34 46677777766643


Q ss_pred             c-------------------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc-
Q 010292          309 S-------------------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW-  368 (513)
Q Consensus       309 ~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-  368 (513)
                      .                   +..+.|...++...+.. +.+...+..+...|...|++++|.+.++....+........ 
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~  372 (472)
T 4g1t_A          294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL  372 (472)
T ss_dssp             HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence            2                   23566777777776653 34556678889999999999999888776665544332211 


Q ss_pred             hHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHH
Q 010292          369 LNVLLIR-VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM  447 (513)
Q Consensus       369 ~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  447 (513)
                      .+..+.. .+...|+.++|+..|.+.++-..  ....          ..+..+.+.++++...+.. +.+..+|..+...
T Consensus       373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~----------~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~  439 (472)
T 4g1t_A          373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSRE----------KEKMKDKLQKIAKMRLSKN-GADSEALHVLAFL  439 (472)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHH----------HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHH----------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            1111222 33467899999999999887433  2221          1122334455666555444 3367789999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCC
Q 010292          448 YASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       448 ~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      |...|++++|++.|++..+.|
T Consensus       440 ~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          440 QELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHCC-------------
T ss_pred             HHHcCCHHHHHHHHHHHHhcC
Confidence            999999999999999988765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.56  E-value=2.5e-12  Score=116.75  Aligned_cols=236  Identities=9%  Similarity=-0.025  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--IVTYNTLI  233 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li  233 (513)
                      ...+......+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|++.|++.... +-.++  ...|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHH
Confidence            3455667778889999999999999999877667888999999999999999999999999863 22222  34588899


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      ..+...|++++|+..|++..+... .+..+|..+...|...|++++|.+.|++..+.. .-+...|..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987643 366789999999999999999999999988752 224667777763555566999


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCccc------chHHHHHHHHHhcCCHH
Q 010292          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV---TDRIKKIEALMRLIPEKEYRP------WLNVLLIRVYAKEDCLE  384 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~  384 (513)
                      +|.+.|+.+.+.. +.+...+..+...+...|+   .+.|...++...++......+      ..+..+...|...|+++
T Consensus       160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999988863 3345666666666666665   444444433332221111100      11223444455555555


Q ss_pred             HHHHHHHHHHh
Q 010292          385 EMEKSINDAFE  395 (513)
Q Consensus       385 ~a~~~~~~~~~  395 (513)
                      +|.+.|++.++
T Consensus       239 ~A~~~~~~al~  249 (272)
T 3u4t_A          239 KADAAWKNILA  249 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            55555555554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.56  E-value=3.6e-13  Score=117.93  Aligned_cols=210  Identities=12%  Similarity=-0.029  Sum_probs=152.9

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292          259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      ++...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            566778888888999999999999999988743 2257888888889999999999999999888763 33555666665


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292          339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      .+|.+.+            .. ...            .+...|++++|+..|++.++.  .|.+...+..+...+...|+
T Consensus        81 ~~~~~~~------------~~-~~~------------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~  133 (217)
T 2pl2_A           81 EAYVALY------------RQ-AED------------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGE  133 (217)
T ss_dssp             HHHHHHH------------HT-CSS------------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhh------------hh-hhh------------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC
Confidence            5555431            00 000            112348899999999998884  35566778888999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      +++|...+++..+..  .+...+..+...|...|++++|+..|++..+.+ +-+...+..+...+...|++++|.+.+++
T Consensus       134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred             hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999998877  578888889999999999999999999998865 55778888999999999999999999887


Q ss_pred             HH
Q 010292          499 MC  500 (513)
Q Consensus       499 m~  500 (513)
                      ..
T Consensus       211 ~~  212 (217)
T 2pl2_A          211 EH  212 (217)
T ss_dssp             --
T ss_pred             Hh
Confidence            54

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=5.8e-12  Score=119.47  Aligned_cols=185  Identities=8%  Similarity=-0.051  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      ..+|..+..++.+.|++++|++.|++..+..+.+...|+.+..++...|+ +++|+..|++..+.  -+-+...|+.+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            34566667777788889999999998888777788888888888888886 99999999888875  2346678888888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCChH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-SGNLP  313 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~  313 (513)
                      ++...|++++|+..|+++++... -+..+|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            88888999999999988887654 37788888888888888888999888888874422 57788888888888 55557


Q ss_pred             HH-----HHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010292          314 RM-----EKIYELVKHHVDGKEFPLIRAMICAYSKCS  345 (513)
Q Consensus       314 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  345 (513)
                      +|     ++.++..++.. +.+...|+.+...+.+.|
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccC
Confidence            76     46777766652 335666666666666655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=4.3e-12  Score=113.79  Aligned_cols=201  Identities=6%  Similarity=-0.046  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010292          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA  340 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  340 (513)
                      ...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4667777777778888888888888776643 2256677777777778888888888877776652 2234444444444


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010292          341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD  420 (513)
Q Consensus       341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  420 (513)
                      |..                                    .|++++|.+.++++...+..+.+...+..+...+...|+++
T Consensus       115 ~~~------------------------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  158 (252)
T 2ho1_A          115 LYE------------------------------------QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA  158 (252)
T ss_dssp             HHH------------------------------------TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HHH------------------------------------HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence            444                                    45555555555544442222333444555555555555555


Q ss_pred             HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|.+.++++.+... .+...+..+...|...|++++|..+++++.+.. +.+...+..+...+...|++++|.++++++.
T Consensus       159 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          159 QAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             HHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            55555555544332 134445555555555555555555555555433 3344455555555555555555555555554


Q ss_pred             H
Q 010292          501 K  501 (513)
Q Consensus       501 ~  501 (513)
                      +
T Consensus       237 ~  237 (252)
T 2ho1_A          237 R  237 (252)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.52  E-value=2.7e-12  Score=116.53  Aligned_cols=246  Identities=11%  Similarity=-0.004  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP--NVFTYNYLIAG  270 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~  270 (513)
                      +......+...|++++|+..|++..+.  .+-+...+..+..++...|++++|+..|++..+.+..+  ...+|..+...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            334444555555555555555555542  11223345555555555555555555555555422111  12234445555


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010292          271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI  350 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  350 (513)
                      +...|++++|.+.|++..+.. .-+..++..+...+...|++++|.+.+++..+. .+.+...+..              
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~--------------  147 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYE--------------  147 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHH--------------
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHH--------------
Confidence            555555555555555544421 112344444444455555555555544444433 1112222222              


Q ss_pred             HHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc---HHHHHHHHH
Q 010292          351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA---VDKLANFVK  427 (513)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~  427 (513)
                                            +...+...+++++|.+.|++.++..  |.+...+..+...+...|+   +++|...++
T Consensus       148 ----------------------l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  203 (272)
T 3u4t_A          148 ----------------------LGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYE  203 (272)
T ss_dssp             ----------------------HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence                                  2212223347777777777776643  3334455566666666676   666777777


Q ss_pred             HHHhcC-Cccc------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          428 RAESAG-WRLC------RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY  481 (513)
Q Consensus       428 ~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~  481 (513)
                      ++.+.. -.|+      ...|..+...|...|++++|.+.|++..+.+ +-+...+..+..
T Consensus       204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~  263 (272)
T 3u4t_A          204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence            664331 1122      2456677777888888888888888887765 334444444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.52  E-value=1.3e-12  Score=118.72  Aligned_cols=249  Identities=10%  Similarity=-0.025  Sum_probs=148.9

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010292          201 MYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (513)
                      ...|++++|++.|+++.+.....+  +..+|..+...+...|++++|...|++..+... .+..+|..+...|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence            345677888888888775311111  345677777778888888888888888776543 35777777777888888888


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292          279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR  358 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  358 (513)
                      +|.+.|++..+.. ..+..++..+...+...|++++|.+.++.+.+..  |+.......+.                   
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~-------------------  152 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLY-------------------  152 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHH-------------------
Confidence            8888887777632 1246677777777777788888877777776642  22221111222                   


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--
Q 010292          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL--  436 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--  436 (513)
                                       .+...|++++|...+.+........  ...+ .++..+...++.++|.+.++...+.....  
T Consensus       153 -----------------~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  212 (275)
T 1xnf_A          153 -----------------LAEQKLDEKQAKEVLKQHFEKSDKE--QWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAE  212 (275)
T ss_dssp             -----------------HHHHHHCHHHHHHHHHHHHHHSCCC--STHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred             -----------------HHHHhcCHHHHHHHHHHHHhcCCcc--hHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence                             2233356666666665555432221  1122 24555555666666666666554322111  


Q ss_pred             -cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010292          437 -CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       437 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                       +...+..+...|.+.|++++|...|++....+  |+.  +.....++...|++++|++.+
T Consensus       213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence             14556667777777777777777777777654  321  223345566667777776655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=2.4e-12  Score=114.67  Aligned_cols=200  Identities=10%  Similarity=-0.014  Sum_probs=127.1

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      ....|..+...+.+.|++++|.+.|++..+..+.+...|..+...+...|++++|++.|+++.+.  .+.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence            45566667777778888888888888887766557778888888888888888888888887764  2346677777888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  314 (513)
                      .+...|++++|...|+++.+... .+...+..+...+.+.|++++|.+.++++.+.. ..+...+..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            88888888888888888776543 366777777788888888888888888776642 2256677777777888888888


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292          315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      |.+.++.+.+.. +.+..++..+..+|.+.|++++|.+.++...+
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            888887776652 23445555555555555555555554444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.51  E-value=6.1e-13  Score=120.95  Aligned_cols=244  Identities=9%  Similarity=-0.065  Sum_probs=115.1

Q ss_pred             ccCCHHHHHHHHHHHHhccC---C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          168 RINNVDLAADLFAEAANKHL---K-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..|++++|++.|+++.+...   + +..+|..+...+...|++++|++.|+++.+.  .+.+..+|..+...+...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence            34555555555555554321   1 3445555555555555555555555555543  1223455555555555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      +|...|++..+... .+..+|..+...|.+.|++++|.+.|+++.+.  .|+.......+..+...|++++|...++...
T Consensus        95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            55555555554322 13445555555555555555555555555442  2333333333333444455555555555444


Q ss_pred             hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292          324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR-----PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                      ... +++...+. ++..+...++.+.+...   +.+.......     +..+..+...|...|++++|...|++.+... 
T Consensus       172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  245 (275)
T 1xnf_A          172 EKS-DKEQWGWN-IVEFYLGNISEQTLMER---LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-  245 (275)
T ss_dssp             HHS-CCCSTHHH-HHHHHTTSSCHHHHHHH---HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             hcC-CcchHHHH-HHHHHHHhcCHHHHHHH---HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence            432 12222222 33344444443332222   2222221110     1112246777777788888888887777643 


Q ss_pred             CCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010292          399 SVTTVRIMRCIVSSYFRCNAVDKLANFV  426 (513)
Q Consensus       399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~  426 (513)
                       |.+...+   ..++...|++++|++-+
T Consensus       246 -p~~~~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          246 -VHNFVEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -CTTCHHH---HHHHHHHHHHHHC----
T ss_pred             -chhHHHH---HHHHHHHHHHHhhHHHH
Confidence             3222223   22455667777776654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=8.6e-12  Score=109.45  Aligned_cols=202  Identities=6%  Similarity=-0.091  Sum_probs=104.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      +...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++.+.+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            45667777788888888888888888877643 2346777778888888888888888888777652 234445555555


Q ss_pred             HHHhc-CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292          340 AYSKC-SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       340 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      .|... |++++|...++...+..........+..+...+...|++++|...++++.+..  +.+...+..+...+...|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence            55555 55554444443333310000001111124444444444444444444444422  2223334444444444444


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      +++|.++++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44444444444332211123333334444444444444444444443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.50  E-value=7.1e-11  Score=107.26  Aligned_cols=228  Identities=12%  Similarity=-0.009  Sum_probs=154.2

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      +..++..+...+.+.|++++|.+.|++..+.  .+...+..+...|..    .+++++|++.|++..+. +   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence            5666777777778888888888888877762  256677777788888    88888888888887764 3   677777


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292          231 TLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLL  302 (513)
Q Consensus       231 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  302 (513)
                      .+...|..    .+++++|+..|++..+.+   +...+..+...|..    .|++++|++.|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77778877    888888888888877764   66777777777777    788888888888877755   56666777


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010292          303 LRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA  378 (513)
Q Consensus       303 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  378 (513)
                      ...+..    .+++++|.+.|+...+.+   +...+..+...|..                                +..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~--------------------------------g~~  197 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH--------------------------------GEG  197 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--------------------------------TCS
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc--------------------------------CCC
Confidence            777776    777888888777766643   22333333333333                                000


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcC
Q 010292          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAG  433 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~  433 (513)
                      ..+++++|.+.|++..+.+.    ...+..+...|..    .+++++|.+.+++..+.+
T Consensus       198 ~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          198 ATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            05566666666665555422    2234455555665    666666666666666555

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=6.7e-12  Score=119.07  Aligned_cols=236  Identities=8%  Similarity=-0.055  Sum_probs=170.8

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +...|+.+...+.+.|++++|++.|++..+.  -+-+...|+.+..++...|+ +++|+..|++..+.... +...|+.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence            6788999999999999999999999999975  24457889999999999996 99999999999987653 78899999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-cCC
Q 010292          268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSV  346 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~  346 (513)
                      ..++.+.|++++|+..|+++.+..- -+...|..+..++...|++++|++.++++++.. +.+...|+.+..+|.+ .|.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999988542 268899999999999999999999999999874 3467788888877777 454


Q ss_pred             hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHH
Q 010292          347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLAN  424 (513)
Q Consensus       347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~  424 (513)
                      .++|.                               .+.+++.|++.+.  ..|.+...|+.+...+...|  ++++|++
T Consensus       251 ~~eA~-------------------------------~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~  297 (382)
T 2h6f_A          251 NDRAV-------------------------------LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLN  297 (382)
T ss_dssp             CSHHH-------------------------------HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred             chHHH-------------------------------HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence            35442                               1112233333333  22334444555555555555  4555555


Q ss_pred             HHHHHHhcCCcccHhhHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 010292          425 FVKRAESAGWRLCRSLYHSKMVMYASQR---------RVEEMESVLKEM  464 (513)
Q Consensus       425 ~~~~m~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m  464 (513)
                      .+.++ +.. ..+...+..+...|.+.|         .+++|+++|+++
T Consensus       298 ~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          298 QLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             HHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            55554 221 223444555555555542         235666666666

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.49  E-value=1.7e-12  Score=125.64  Aligned_cols=274  Identities=9%  Similarity=-0.051  Sum_probs=169.9

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-C
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I----VTYNTLISVFGRLLLVDHMEAAFQEIKDS----NL-S  258 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~  258 (513)
                      ....+..+...+...|++++|+..|++..+.   .|+ .    ..|..+...+...|++++|+..|++..+.    +- .
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            3555667778889999999999999999875   333 3    47888889999999999999999988753    11 1


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHH
Q 010292          259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGN-----------------LPRME  316 (513)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~  316 (513)
                      ....++..+...|...|++++|.+.|++..+.    +-.+ ...++..+...+...|+                 +++|.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~  203 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV  203 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence            23467788888899999999999999887652    1111 24577778888888888                 66676


Q ss_pred             HHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292          317 KIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       317 ~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      +.+++..+.    +..+ ...++..                                    +...|...|++++|.+.++
T Consensus       204 ~~~~~al~~~~~~~~~~~~~~~~~~------------------------------------la~~~~~~g~~~~A~~~~~  247 (411)
T 4a1s_A          204 EFYQENLKLMRDLGDRGAQGRACGN------------------------------------LGNTYYLLGDFQAAIEHHQ  247 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHH------------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH------------------------------------HHHHHHHcCChHHHHHHHH
Confidence            666654431    0000 1122333                                    4455555555555555555


Q ss_pred             HHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292          392 DAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       392 ~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      +.++..    .......++..+...|...|++++|.+.+++..+....     ....++..+...|...|++++|...++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (411)
T 4a1s_A          248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN  327 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            544321    11111224555666666666666666666655432110     113445556666666777777776666


Q ss_pred             HHHhCC-----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          463 EMENYK-----IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       463 ~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      +.....     ......+|..+...|.+.|++++|.+.+++..+
T Consensus       328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            655421     011133555666667777777777776666543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.49  E-value=3.2e-12  Score=119.55  Aligned_cols=277  Identities=10%  Similarity=-0.050  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHH
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLS-PNVFT  263 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~  263 (513)
                      +......+...|++++|+..|+++.+. . +.+    ...|..+...+...|++++|...+++..+.    +-. ....+
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhh-C-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            334445555666666666666666543 1 112    244555566666666666666666554421    111 12345


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 010292          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPRMEKI  318 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~  318 (513)
                      +..+...+...|++++|.+.+++..+..- .++    ..++..+...+...|+                    +++|.+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            66666677777777777777766543100 012    3466677777777777                    6666666


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 010292          319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH--  396 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--  396 (513)
                      +++..+.               +...++                .......+..+...+...|++++|.+.+++..+.  
T Consensus       166 ~~~a~~~---------------~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          166 YEENLSL---------------VTALGD----------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHHH---------------HHHHTC----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---------------HHhcCC----------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6544321               000010                0000111224666677778888888777776542  


Q ss_pred             --CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----Ccc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 010292          397 --KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG----WRL-CRSLYHSKMVMYASQRRVEEMESVLKEMENYK-  468 (513)
Q Consensus       397 --~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-  468 (513)
                        +.......++..+...+...|++++|.+.+++..+..    ..+ ...++..+...|...|++++|...+++..+.. 
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence              1112223367778888889999999999888765321    111 14567778888999999999999998876531 


Q ss_pred             ----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          469 ----IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       469 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                          ......++..+...|.+.|++++|.+.+++..+.
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                1112447778889999999999999999988765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.48  E-value=5.8e-12  Score=121.46  Aligned_cols=276  Identities=10%  Similarity=-0.072  Sum_probs=158.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLSP-  259 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-  259 (513)
                      ....+......+...|++++|+..|++..+. + +.+    ...|..+...+...|++++|...|++..+.    +-.| 
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            5566777888899999999999999999875 1 223    357888888999999999999999887542    2111 


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHH
Q 010292          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPR  314 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~  314 (513)
                      ...+|..+...|...|++++|...+++..+..- .++    ..++..+...+...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            245677888888899999999999988765210 012    4577788888888888                    777


Q ss_pred             HHHHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----ccchHHHHHHHHHhcCCHHH
Q 010292          315 MEKIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY----RPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       315 a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~  385 (513)
                      |.+.++...+.    +..+ ...++..+...|...|++++|...++...+......    ....+..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            77777665432    1111 123445555555555555555444333322211111    11112234445555555555


Q ss_pred             HHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCHHH
Q 010292          386 MEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       386 a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~  456 (513)
                      |...+++.+..    +.......++..+...|...|++++|.+.+++..+.    +..+ ....+..+...|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            55555554431    111111233444555555555555555555544322    1111 12334444455555555555


Q ss_pred             HHHHHHHHHh
Q 010292          457 MESVLKEMEN  466 (513)
Q Consensus       457 A~~~~~~m~~  466 (513)
                      |...+++..+
T Consensus       326 A~~~~~~al~  335 (406)
T 3sf4_A          326 AMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.48  E-value=2.1e-12  Score=125.01  Aligned_cols=275  Identities=11%  Similarity=-0.049  Sum_probs=180.1

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-CCCHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----GTYNALLGAYMYNGLSDKCQSLFRDLKKEA---NI-SPSIVT  228 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~-~p~~~~  228 (513)
                      ..+..+...+...|++++|.+.|++..+.+..+.    ..|..+...|...|++++|++.|++..+..   +. ......
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            3444566677888999999999999888765543    578888888999999999999988876421   11 123457


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHH
Q 010292          229 YNTLISVFGRLLLVDHMEAAFQEIKDS----N-LSPNVFTYNYLIAGYMTAWM-----------------WGKVEEIYQM  286 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~  286 (513)
                      +..+...+...|++++|...|++..+.    + ......+|..+...|...|+                 +++|.+.+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            788888899999999999988887653    1 11134577888888999999                 8999888887


Q ss_pred             HHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-Cc----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292          287 MKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KE----FPLIRAMICAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       287 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~  356 (513)
                      ..+.    +-.+ ...++..+...+...|++++|.+.+++..+.... .+    ...+..                    
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------------  268 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN--------------------  268 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH--------------------
Confidence            6541    1111 2457788888999999999999999887653110 01    112333                    


Q ss_pred             HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010292          357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA  432 (513)
Q Consensus       357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  432 (513)
                                      +...|...|++++|.+.+++.+...    .......++..+...|...|++++|.+.+++..+.
T Consensus       269 ----------------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          269 ----------------LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             ----------------HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                            4445555555555555555444321    11112345566666666777777777766665432


Q ss_pred             ----CC-cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          433 ----GW-RLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       433 ----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                          +. ......+..+...|.+.|++++|...+++..+.
T Consensus       333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence                11 112345666667777777777777777776653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=1.4e-10  Score=105.27  Aligned_cols=228  Identities=11%  Similarity=-0.050  Sum_probs=143.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      +..++..+...+...|++++|...|++..+.   -+..++..+...|..    .|++++|.+.|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5667777888888888888888888888873   356677778888888    888888888888887765   677777


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010292          301 LLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV  376 (513)
Q Consensus       301 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  376 (513)
                      .+...|..    .+++++|.+.|++..+.+   +...+..+...|...                                
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~--------------------------------  123 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG--------------------------------  123 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC--------------------------------
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC--------------------------------
Confidence            88888888    888888888888777653   444444444444440                                


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh--
Q 010292          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS--  450 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--  450 (513)
                      ....+++++|.+.|++..+.+    +...+..+...|..    .+++++|.+.+++..+.+   +...+..+...|..  
T Consensus       124 ~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~  196 (273)
T 1ouv_A          124 KVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE  196 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred             CCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            000445555555555555432    12234444455554    556666666666555443   23444555555555  


Q ss_pred             --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010292          451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  503 (513)
                        .+++++|...|++..+.+   +...+..+...|..    .+++++|.+.|++..+.|
T Consensus       197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence              666666666666665544   14455555566665    666666666666655544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.47  E-value=7.2e-12  Score=120.78  Aligned_cols=302  Identities=11%  Similarity=-0.062  Sum_probs=211.0

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCCC
Q 010292          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISPS  225 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p~  225 (513)
                      ......+......+.+.|++++|...|++..+.+..+    ..+|..+...|...|++++|...|++....   .+..|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            3455666777788888999999999999988876544    357888888899999999999998876532   111122


Q ss_pred             -HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHH
Q 010292          226 -IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGK  279 (513)
Q Consensus       226 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~  279 (513)
                       ..++..+...+...|++++|...+++..+... .++    ..++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence             45677888888899999999998888764210 012    4477888888888999                    888


Q ss_pred             HHHHHHHHHc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC-CCc----HHHHHHHHHHHHhcCChhH
Q 010292          280 VEEIYQMMKA----GPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKE----FPLIRAMICAYSKCSVTDR  349 (513)
Q Consensus       280 a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~  349 (513)
                      |.+.+++...    .+-.+ ...++..+...+...|++++|.+.+++..+... .++    ..++..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            8888887644    12112 245778888888999999999999988765311 111    3367788888999999988


Q ss_pred             HHHHHHHHHhCCCC----CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHH
Q 010292          350 IKKIEALMRLIPEK----EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDK  421 (513)
Q Consensus       350 a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~  421 (513)
                      |...++....+...    ......+..+...|...|++++|.+.+++....    +..+....++..+...|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            87776544433221    111222335788899999999999999887763    2222235567888899999999999


Q ss_pred             HHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCH
Q 010292          422 LANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRV  454 (513)
Q Consensus       422 a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~  454 (513)
                      |.+.+++..+.    +..+ ...++..+...+...|+.
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            99999986542    2221 234455566666665554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.47  E-value=3.2e-12  Score=113.80  Aligned_cols=201  Identities=10%  Similarity=-0.009  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292          226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                      ...|..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++|.+.|+++.+.. ..+...+..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            34555556666666666666666666665432 245556666666666666666666666655432 1245555566666


Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010292          306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  385 (513)
                      +...|++++|.++++.+.+.. +.+...+.                                    .+...+...|++++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~------------------------------------~~a~~~~~~~~~~~  143 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAG-MENGDLFY------------------------------------MLGTVLVKLEQPKL  143 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT-CCSHHHHH------------------------------------HHHHHHHHTSCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHH------------------------------------HHHHHHHHhccHHH
Confidence            666666666666666555532 12222222                                    24444555555666


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      |.+.++++.+..  +.+...+..+...+...|++++|.+.++++.+... .+...+..+...|.+.|++++|...++++.
T Consensus       144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            666665555532  22344455566666666666666666666554432 234555666666666666666666666665


Q ss_pred             hCC
Q 010292          466 NYK  468 (513)
Q Consensus       466 ~~~  468 (513)
                      +.+
T Consensus       221 ~~~  223 (243)
T 2q7f_A          221 DIQ  223 (243)
T ss_dssp             HHC
T ss_pred             ccC
Confidence            543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.46  E-value=7.5e-12  Score=117.06  Aligned_cols=279  Identities=11%  Similarity=-0.045  Sum_probs=194.1

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTY  229 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~  229 (513)
                      .+......+...|++++|...|++..+....+    ...|..+...+...|++++|++.+++....   .+..| ...++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            34455667788999999999999998876544    467888999999999999999999886542   11112 24577


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHHHHHHH
Q 010292          230 NTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGKVEEIY  284 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~  284 (513)
                      ..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            8888999999999999999988764211 122    3478888889999999                    89999888


Q ss_pred             HHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292          285 QMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       285 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      ++....    +-.+ ...++..+...+...|++++|.+.++...+...               +.++...          
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~----------  221 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK---------------EFGDKAA----------  221 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------HHTCHHH----------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------------hcCChHH----------
Confidence            876531    1111 245677788888888999999888887654210               0000000          


Q ss_pred             CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---
Q 010292          360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA---  432 (513)
Q Consensus       360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---  432 (513)
                            ....+..+...+...|++++|.+.+++....    +.......++..+...+...|++++|...+++..+.   
T Consensus       222 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          222 ------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence                  0001223566667777777777777766542    111122456777888888999999999988877543   


Q ss_pred             -CCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          433 -GWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       433 -~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                       +.. ....++..+...|.+.|++++|...+++..+.
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             111 12446777888899999999999999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.45  E-value=2.4e-11  Score=116.39  Aligned_cols=235  Identities=6%  Similarity=-0.105  Sum_probs=137.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCC-CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CC-CHHHHHHH
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSN-LSP----NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MP-DTNTYLLL  302 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g-~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p-~~~t~~~l  302 (513)
                      ..+...|++++|...|++..+.- -.+    ...+|..+...|...|++++|.+.+++..+.    +- .+ ...++..+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            34455556666666555554320 001    1234555555555555555555555554331    10 00 12344445


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC  382 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  382 (513)
                      ...|...|++++|.+.++...+.                               .............+..+...|...|+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~lg~~y~~~g~  239 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSM-------------------------------AEAEKQPQLMGRTLYNIGLCKNSQSQ  239 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH-------------------------------HHHcCChHHHHHHHHHHHHHHHHCCC
Confidence            55555555555555555444331                               11111111111112247777788888


Q ss_pred             HHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcccHhhHHHHHHHHHhcCC-
Q 010292          383 LEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLCRSLYHSKMVMYASQRR-  453 (513)
Q Consensus       383 ~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~-  453 (513)
                      +++|.+.+++.++.    +..+....++..+...|...|++++|.+.+++..+.    +-......+..+...|...|+ 
T Consensus       240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~  319 (383)
T 3ulq_A          240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE  319 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence            88888888877662    222445667888889999999999999998877543    222223335667777888888 


Q ss_pred             --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          454 --VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       454 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                        +++|+.++++..  ........+..+...|...|++++|.+.+++..+
T Consensus       320 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          320 EAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              777777777662  1122345677888999999999999999998754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.43  E-value=1.8e-12  Score=120.10  Aligned_cols=246  Identities=11%  Similarity=-0.001  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CC
Q 010292          226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PV  292 (513)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~  292 (513)
                      ..++..+...+...|++++|..+|+++.+.       .......++..+...|...|++++|.+.|++....      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456777777888888888888888877752       12224456777777777788888888877776542      11


Q ss_pred             CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292          293 MP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       293 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                      .| ...++..+...+...|++++|.+.++++.+....            ...                 .........+.
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------~~~-----------------~~~~~~~~~~~  157 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------VLG-----------------KDHPDVAKQLN  157 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------HHC-----------------TTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------hcC-----------------CCChHHHHHHH
Confidence            12 3556667777777777777777777766543100            000                 00000011122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------CcccH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG-------WRLCR  438 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~  438 (513)
                      .+...+...|++++|.+++++....      +..+....++..+...|...|++++|.++++++.+..       ..+..
T Consensus       158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  237 (311)
T 3nf1_A          158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN  237 (311)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence            3566666677777777777766553      2234445567777888888888888888888776421       11111


Q ss_pred             -------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          439 -------SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       439 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                             ..+..+...+...+.+.+|...++...... +.+..+|..+..+|.+.|++++|.+++++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   112222333344555555666666665433 34567788899999999999999999998765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.42  E-value=7.2e-11  Score=100.16  Aligned_cols=167  Identities=16%  Similarity=0.019  Sum_probs=147.2

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +..+|..+...|.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|++.+......  .+-+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence            67889999999999999999999999999988778999999999999999999999999999875  3456778888888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  314 (513)
                      .+...++++.|...+++..+... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            99999999999999999887643 367889999999999999999999999988743 2357889999999999999999


Q ss_pred             HHHHHHHHHhc
Q 010292          315 MEKIYELVKHH  325 (513)
Q Consensus       315 a~~~~~~~~~~  325 (513)
                      |.+.|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999998874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.37  E-value=1e-10  Score=114.26  Aligned_cols=274  Identities=12%  Similarity=-0.004  Sum_probs=120.8

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010292          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK---CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA  247 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  247 (513)
                      +.++|.+.|++..+.|.++  .+..|...|...+..++   +.+.+...... |   +...+..|...|...+.++.+..
T Consensus        89 ~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           89 EHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCHH
Confidence            4555666666555544322  45555555555443322   23333333322 1   23344445555555553333332


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHH
Q 010292          248 AFQEIKDSNLSPNVFTYNYLIAGYMTAW---MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS----GNLPRMEKIYE  320 (513)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~  320 (513)
                      ....+.+.-...+...+..|...|.+.|   +.++|++.|++..+.| .++...+..|...|...    +++++|.+.|+
T Consensus       163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~  241 (452)
T 3e4b_A          163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE  241 (452)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            2222211111112225555555555566   5566666666655554 22344334444444333    45666666666


Q ss_pred             HHHhccCCCcHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC-----CHHHHHHHHHH
Q 010292          321 LVKHHVDGKEFPLIRAMICA-Y--SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED-----CLEEMEKSIND  392 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~  392 (513)
                      ... .|   +...+..+-.. |  ...++.++|.+.++...+.   +...-.+ .+...|. .|     ++++|.+.|++
T Consensus       242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g~~~A~~-~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---DQPRAEL-LLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---TCHHHHH-HHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---CCHHHHH-HHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence            555 22   33333444444 2  2344444443333332221   1111111 2333333 33     56666666655


Q ss_pred             HHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010292          393 AFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEM  464 (513)
Q Consensus       393 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m  464 (513)
                      .. .+    +...+..|...|..    ..+.++|..+|++..+.|.   ......|...|..    ..+.++|...|+..
T Consensus       313 Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          313 AV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             TT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             Hh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            44 11    22233344444443    2256666666666555442   2233334444432    34566666666666


Q ss_pred             HhCC
Q 010292          465 ENYK  468 (513)
Q Consensus       465 ~~~~  468 (513)
                      .+.|
T Consensus       385 ~~~g  388 (452)
T 3e4b_A          385 KAQD  388 (452)
T ss_dssp             HTTC
T ss_pred             HHCC
Confidence            6555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=1.8e-09  Score=99.85  Aligned_cols=179  Identities=9%  Similarity=-0.005  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhccCCCHhHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010292          173 DLAADLFAEAANKHLKTIGTYNALLGAYMY-------NGLS-------DKCQSLFRDLKKEANISP-SIVTYNTLISVFG  237 (513)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~  237 (513)
                      ++|..+|++.....+.+...|..++..+..       .|++       ++|..+|++..+  .+.| +...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHHH
Confidence            678888888888766688888888877763       4776       888999988885  2345 4557888888888


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-hcCChHH
Q 010292          238 RLLLVDHMEAAFQEIKDSNLSPN-VF-TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPR  314 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~  314 (513)
                      +.|++++|..+|++..+.  .|+ .. +|..+...+.+.|++++|.++|++..+.+- .+...|........ ..|++++
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence            889999999999888874  343 33 788888888888888889888888887432 23444443333322 2688888


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      |.++|+...+.. +.+...|..++..+.+.|+.++|..+++..
T Consensus       188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            888888877652 234555555555555555555444444333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.37  E-value=6.8e-11  Score=116.36  Aligned_cols=207  Identities=10%  Similarity=-0.043  Sum_probs=173.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH-HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292          134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      .+.++..++.....    .+.+...+..+...+...|++ ++|++.|++..+..+.+...|..+...|.+.|++++|++.
T Consensus        84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            44555666554432    344788899999999999999 9999999999988777899999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------c
Q 010292          213 FRDLKKEANISPSIVTYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA--------W  275 (513)
Q Consensus       213 ~~~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g  275 (513)
                      |++..+.   .|+...+..+...+...         |++++|+..|++..+... -+...|..+..+|...        |
T Consensus       160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccc
Confidence            9999863   68888999999999999         999999999999988654 3688899999999998        9


Q ss_pred             CHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292          276 MWGKVEEIYQMMKAGPVMP----DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      ++++|++.|++..+.  .|    +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.
T Consensus       236 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          236 ISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998874  34    78899999999999999999999999988863 345666777777777777555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=2.7e-11  Score=112.04  Aligned_cols=242  Identities=14%  Similarity=0.055  Sum_probs=165.0

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA---  220 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---  220 (513)
                      .+.+..++..+...+...|++++|..+|+++.+.       ..+ ...++..+...|...|++++|++.|++.....   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4445677888889999999999999999988773       233 67788999999999999999999999887531   


Q ss_pred             --C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          221 --N-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS------NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       221 --g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                        + ......++..+...+...|++++|...|++..+.      +-.| ...++..+...+...|++++|.++|+++.+.
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              1 1223567888999999999999999999988764      2222 3466888889999999999999999998763


Q ss_pred             ------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------CCCcH-------HHHHHHHHHHHhcCChhH
Q 010292          291 ------PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-------DGKEF-------PLIRAMICAYSKCSVTDR  349 (513)
Q Consensus       291 ------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~  349 (513)
                            +-.| ...++..+...+...|++++|.+.++++.+..       ..+..       ..+..+...+...+.+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE  262 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence                  2123 35678888999999999999999999887531       11111       111122222222233332


Q ss_pred             HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE  395 (513)
Q Consensus       350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  395 (513)
                      +...++......  ......+..+...|...|++++|.+.|++.++
T Consensus       263 a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          263 YGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            222222221111  11122233688999999999999999998776

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.35  E-value=1.3e-09  Score=100.84  Aligned_cols=236  Identities=8%  Similarity=0.022  Sum_probs=150.7

Q ss_pred             CHhHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHH
Q 010292          189 TIGTYNALLGAYMYN----GLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------LLLV-------DHME  246 (513)
Q Consensus       189 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~  246 (513)
                      +...|...+...-+.    ++.    ++|..+|++....  .+-+...|..++..+..       .|++       ++|.
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~   84 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA   84 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence            355677777664443    232    6777888887764  24466677777776653       4665       7777


Q ss_pred             HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TN-TYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .+|++..+. .. -+...|..+...+.+.|++++|.++|++..+  +.|+ .. .|..+...+.+.|++++|.++|++..
T Consensus        85 ~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A           85 NIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            777777762 22 2455777777777777777777777777776  3343 22 67777777777777777777777776


Q ss_pred             hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010292          324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV  403 (513)
Q Consensus       324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  403 (513)
                      +... .+...|......                                   .+...|++++|.++|++.++..  |.+.
T Consensus       162 ~~~p-~~~~~~~~~a~~-----------------------------------~~~~~~~~~~A~~~~~~al~~~--p~~~  203 (308)
T 2ond_A          162 EDAR-TRHHVYVTAALM-----------------------------------EYYCSKDKSVAFKIFELGLKKY--GDIP  203 (308)
T ss_dssp             TSTT-CCTHHHHHHHHH-----------------------------------HHHTSCCHHHHHHHHHHHHHHH--TTCH
T ss_pred             hcCC-CCHHHHHHHHHH-----------------------------------HHHHcCCHHHHHHHHHHHHHhC--CCcH
Confidence            6422 222222111000                                   0112477777777777776632  3455


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-WRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      ..|..++..+.+.|++++|..+|++..+.. ..|  ....|..++..+.+.|+.++|..+++++.+.
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            667777777777788888888888777652 343  3456777777777778888888887777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.34  E-value=6.9e-11  Score=115.53  Aligned_cols=340  Identities=9%  Similarity=-0.023  Sum_probs=217.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH---HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV---DLAADLFAEAANKHLKTIGTYNALLGAYMYNG---  204 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---  204 (513)
                      .++.+.|.+.|+...+.+      +...+..|-..|...|+.   ++|.+.|++..+.   +...+..|...+...+   
T Consensus        16 ~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~   86 (452)
T 3e4b_A           16 RGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGAT   86 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHT------CCTGGGTCC-------------------------------CHHHHHHHHHTC--CC
T ss_pred             CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCC
Confidence            468889999999887764      344566677777778888   8999999988865   6667777777565655   


Q ss_pred             --ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292          205 --LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD---HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       205 --~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                        +.++|++.|++.... |. ++  .+..|...|...+..+   .+.+.+......|   +...+..|...|...+.+++
T Consensus        87 ~~~~~~A~~~~~~Aa~~-g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           87 EAEHHEAESLLKKAFAN-GE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             HHHHHHHHHHHHHHHHT-TC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred             CcCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence              788999999999874 42 23  6677777777766544   3455555555544   34566677788888775555


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc----CChhHHHH
Q 010292          280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC----SVTDRIKK  352 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~  352 (513)
                      +......+.+.-...+...+..|...|...|   +.++|.+.|+...+.|. ++...+..+...|...    ++.++|.+
T Consensus       160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            4444333322111123338888888999999   89999999999988864 4555556677777654    56665555


Q ss_pred             HHHHHHhCCCCCcccchHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-----cHHHHHH
Q 010292          353 IEALMRLIPEKEYRPWLNVLLIRV-Y--AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-----AVDKLAN  424 (513)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~  424 (513)
                      .++..   . ++...-.+ .+... |  ...+++++|.+.|++..+.+    +...+..|...|. .|     ++++|.+
T Consensus       239 ~~~~a---a-~g~~~a~~-~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          239 LLEKI---A-PGYPASWV-SLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHH---G-GGSTHHHH-HHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHH---c-CCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            54443   3 33333223 35544 3  46899999999999998865    3444666777776 55     9999999


Q ss_pred             HHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 010292          425 FVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVL  496 (513)
Q Consensus       425 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~  496 (513)
                      .|++.. .|   +...+..|...|..    ..++++|...|++..+.|.   ......|...|..    ..+.++|..+|
T Consensus       309 ~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~  381 (452)
T 3e4b_A          309 HFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFS  381 (452)
T ss_dssp             HHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred             HHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            999877 44   45666667777765    4599999999999998884   3355666677764    56899999999


Q ss_pred             HHHHHCCC
Q 010292          497 GLMCKNGY  504 (513)
Q Consensus       497 ~~m~~~g~  504 (513)
                      +...+.|.
T Consensus       382 ~~A~~~g~  389 (452)
T 3e4b_A          382 QLAKAQDT  389 (452)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHCCC
Confidence            99988875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.34  E-value=1.8e-10  Score=110.19  Aligned_cols=232  Identities=10%  Similarity=0.021  Sum_probs=115.7

Q ss_pred             HHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHHH
Q 010292          164 KFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNTL  232 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~l  232 (513)
                      ..+...|++++|.+.|++..+.-  .+    ...+|..+...|...|++++|++.+++......-.++     ..+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            34455666666666666655421  11    2345666666666666666666666655432111111     2345555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHHH
Q 010292          233 ISVFGRLLLVDHMEAAFQEIKDSNLS-PN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLLL  302 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~l  302 (513)
                      ...|...|++++|+..|++..+.... .+    ..+|+.+...|...|++++|.+.|++..+.    +. .....++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            66666666666666666555432100 11    134555556666666666666666555441    21 2224555556


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC  382 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  382 (513)
                      ...+.+.|++++|.+.+++..+..                               .....+..... ...+...|...|+
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~-~~~l~~~~~~~~~  318 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYS-------------------------------QKAGDVIYLSE-FEFLKSLYLSGPD  318 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHH-HHHHHHHHTSSCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHH-HHHHHHHHhCCCc
Confidence            666666666666666665544321                               00001111111 1124444445555


Q ss_pred             ---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292          383 ---LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       383 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  430 (513)
                         +++|+.++++.   +..+.....+..+...|...|++++|.+.+++..
T Consensus       319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence               45555554443   2222233445566666677777777777766654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.32  E-value=7.8e-11  Score=115.91  Aligned_cols=148  Identities=10%  Similarity=-0.022  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292          172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS-DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ  250 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  250 (513)
                      ++++.+.+++.......+...|..+...+...|++ ++|++.|++..+.  -+-+...|..+..+|.+.|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555555444333566666666666666666 6666666666653  12235566666666666666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------CChH
Q 010292          251 EIKDSNLSPNVFTYNYLIAGYMTA---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--------GNLP  313 (513)
Q Consensus       251 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~  313 (513)
                      +..+..  |+...|..+...|...         |++++|++.|++..+.. .-+...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            665542  4455555566666655         66666666666555422 11345555555555555        5555


Q ss_pred             HHHHHHHHHHh
Q 010292          314 RMEKIYELVKH  324 (513)
Q Consensus       314 ~a~~~~~~~~~  324 (513)
                      +|.+.|++..+
T Consensus       239 ~A~~~~~~al~  249 (474)
T 4abn_A          239 QALSAYAQAEK  249 (474)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=3.4e-10  Score=95.92  Aligned_cols=166  Identities=11%  Similarity=0.034  Sum_probs=93.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010292          295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI  374 (513)
Q Consensus       295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  374 (513)
                      +...|..+...+...|++++|++.|++..+.. +.+...+..+..+|.+.|+++++...+.............+.  .+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY--ILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH--HHH
Confidence            56677778888888888888888888777653 335566666666666666666655555544444333332221  244


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH
Q 010292          375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV  454 (513)
Q Consensus       375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  454 (513)
                      ..+...++++.|.+.+.+.....  |.+...+..+...|...|++++|++.+++..+... -+...|..+...|.+.|++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCH
Confidence            44555555555555555555422  23344455555555555555555555555544332 1344455555555555555


Q ss_pred             HHHHHHHHHHHh
Q 010292          455 EEMESVLKEMEN  466 (513)
Q Consensus       455 ~~A~~~~~~m~~  466 (513)
                      ++|++.|++..+
T Consensus       158 ~~A~~~~~~al~  169 (184)
T 3vtx_A          158 DEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555555555544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=3.8e-10  Score=95.36  Aligned_cols=166  Identities=10%  Similarity=0.020  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...|..+...+...|++++|.+.|+++.+....+...|..+...+...|++++|.+.++++.+.  .+.+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence            3456667777888888888888888887765557788888888888888888888888888764  24467778888888


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      +...|++++|...|+++.+... .+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            8888888888888888876543 367778888888888888888888888877643 23567788888888888888888


Q ss_pred             HHHHHHHHhc
Q 010292          316 EKIYELVKHH  325 (513)
Q Consensus       316 ~~~~~~~~~~  325 (513)
                      .+.++...+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            8888877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.30  E-value=7.3e-10  Score=105.78  Aligned_cols=316  Identities=8%  Similarity=-0.035  Sum_probs=169.0

Q ss_pred             CCCCHHHHHHHHHHh--cccCCHHHHHHHHHHHHhcc--CC---CHhHHHHHHHH--HHHcCChHHHH---------HHH
Q 010292          152 TPMTKEEYTKGIKFA--GRINNVDLAADLFAEAANKH--LK---TIGTYNALLGA--YMYNGLSDKCQ---------SLF  213 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~--~~---~~~~~~~li~~--~~~~g~~~~A~---------~~~  213 (513)
                      +.|+..+-+.|-.+|  .+.+++++|.++++++.+..  ..   +...|-.++..  ..-.+..+.+.         +.+
T Consensus         6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A            6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            445666667777777  77788888888888775532  11   23333444332  11122333333         444


Q ss_pred             HHHHHhCCCCCCH-H---HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccCHHHHHHHH
Q 010292          214 RDLKKEANISPSI-V---TYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWMWGKVEEIY  284 (513)
Q Consensus       214 ~~m~~~~g~~p~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~  284 (513)
                      +.+... ....+. .   .|......+...|++++|+..|++..+.-. .++    ..++..+...|...|++++|.+.+
T Consensus        86 ~~i~~~-~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~  164 (378)
T 3q15_A           86 ETIETP-QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI  164 (378)
T ss_dssp             HHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcc-CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            444321 000010 0   112223334455666666666665553210 011    234555555555566666666655


Q ss_pred             HHHHcC----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292          285 QMMKAG----P-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR  358 (513)
Q Consensus       285 ~~m~~~----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  358 (513)
                      ++..+.    + ..+ ...+++.+...|...|++++|.+.+++..+.                               ..
T Consensus       165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-------------------------------~~  213 (378)
T 3q15_A          165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL-------------------------------AM  213 (378)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HH
T ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------------------HH
Confidence            554431    1 011 1334455555555555555555555544331                               11


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-
Q 010292          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-  434 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-  434 (513)
                      ...........+..+...|...|++++|.+.|++.+..   ...+....++..+...|.+.|++++|...+++..+... 
T Consensus       214 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            11111111111223667777778888888888776651   12233456677888888889999999988888765322 


Q ss_pred             ---cccHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          435 ---RLCRSLYHSKMVMYASQRR---VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       435 ---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                         ......+..+...|...++   +++|+.++++..  ........+..+...|...|++++|.+.|++..+
T Consensus       294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               1123345555556667777   777777777622  1122234566788889999999999988887754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.29  E-value=4.1e-09  Score=100.32  Aligned_cols=303  Identities=9%  Similarity=-0.027  Sum_probs=201.9

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----
Q 010292          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IV----TYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----  260 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----  260 (513)
                      ..+......+...|++++|...+++.....  +++ ..    .++.+...+...|++++|...+++..+... ..+    
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            344555566778999999999999988642  222 22    566777888899999999999998774211 112    


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC----C
Q 010292          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVM--PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG----K  329 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~  329 (513)
                      ..+++.+...+...|++++|.+.+++....    +..  |. ...+..+...+...|++++|...+++..+....    .
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            234566778888999999999999987652    222  32 456677888889999999999999987764322    1


Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcc-cchHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ch
Q 010292          330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEKEYR-PWLNV---LLIRVYAKEDCLEEMEKSINDAFEHKTSV--TT  402 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~  402 (513)
                      ....+..+...+...|++++|...++..... ...+.. .+...   ..+..+...|++++|...+++........  ..
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  252 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  252 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence            2456777788888889988888777665544 222222 22111   12234678899999999888876543221  11


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292          403 VRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCR-SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW  477 (513)
Q Consensus       403 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  477 (513)
                      ...+..+...+...|++++|...++....    .|..++. ..+..+...+...|+.++|...+++.....-  .    .
T Consensus       253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~  326 (373)
T 1hz4_A          253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----T  326 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----c
Confidence            22456677888888999999888887643    2322222 2556667778888999999998888876421  0    1


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          478 IMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       478 ~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      -.+..+...|  +....+++.+....
T Consensus       327 g~~~~~~~~g--~~~~~ll~~~~~~~  350 (373)
T 1hz4_A          327 GFISHFVIEG--EAMAQQLRQLIQLN  350 (373)
T ss_dssp             CCCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred             cHHHHHHHcc--HHHHHHHHHHHhCC
Confidence            1224444444  56667777766543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.29  E-value=6.2e-08  Score=98.19  Aligned_cols=375  Identities=8%  Similarity=0.041  Sum_probs=215.3

Q ss_pred             chhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccC--CCHh
Q 010292          119 NGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHL--KTIG  191 (513)
Q Consensus       119 ~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~--~~~~  191 (513)
                      |...|..++..+.  +..+.+..+|+.+...    .|.+...|...+..-.+.|+   ++.+.++|++.....+  +++.
T Consensus        65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~  140 (679)
T 4e6h_A           65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS  140 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence            6667777777662  3566677777777654    56677777777777777777   8888888888777653  5677


Q ss_pred             HHHHHHHHHHHcCCh--------HHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLS--------DKCQSLFRDLKKEANI-SPS-IVTYNTLISVFGR---------LLLVDHMEAAFQEI  252 (513)
Q Consensus       192 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m  252 (513)
                      .|..-+....+.++.        +.+.++|+......|. .++ ...|...+.....         .++++.+..+|++.
T Consensus       141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra  220 (679)
T 4e6h_A          141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL  220 (679)
T ss_dssp             HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence            777777665554443        3344677776655566 453 4566666654332         23456677777776


Q ss_pred             HHCCCCCCHHHHHH---HHHHH----------HHccCHHHHHHH------------------------------------
Q 010292          253 KDSNLSPNVFTYNY---LIAGY----------MTAWMWGKVEEI------------------------------------  283 (513)
Q Consensus       253 ~~~g~~p~~~~~~~---li~~~----------~~~g~~~~a~~~------------------------------------  283 (513)
                      +......-..+|..   +...+          -...+++.|...                                    
T Consensus       221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~  300 (679)
T 4e6h_A          221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ  300 (679)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred             HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence            64211111122211   11110          000112222223                                    


Q ss_pred             -------------------------------HHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhccCCCcH
Q 010292          284 -------------------------------YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME-KIYELVKHHVDGKEF  331 (513)
Q Consensus       284 -------------------------------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~  331 (513)
                                                     |++.... +.-+...|...+.-+...|+.++|. ++|++.... .+.+.
T Consensus       301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~  378 (679)
T 4e6h_A          301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA  378 (679)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred             HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence                                           3332221 1112334444444455567777775 777777654 44566


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------CC----------cccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292          332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPE----------KE----------YRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      ..|-..+...-+.|++++|.++++.+.....          +.          ..+..+...+....+.|..+.|..+|.
T Consensus       379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6666777777777877777777655543210          10          011112245555566677888888888


Q ss_pred             HHHhc-CCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010292          392 DAFEH-KTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI  469 (513)
Q Consensus       392 ~~~~~-~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  469 (513)
                      +..+. +.....  +|...+..-.+. ++.+.|..+|+...+. +.-+...+...++.....|+.+.|..+|+.......
T Consensus       459 ~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          459 KCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            77765 222222  232222222233 4478888888877654 223455566777777778888888888888776542


Q ss_pred             CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          470 DC--SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       470 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+  ....|...+..-.+.|+.+.+.++.++|.+.
T Consensus       536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            11  3456777777777888888888888888765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.26  E-value=1.8e-08  Score=95.87  Aligned_cols=302  Identities=10%  Similarity=-0.024  Sum_probs=204.9

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccCC-CH----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHH
Q 010292          159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TI----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTY  229 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~  229 (513)
                      +......+...|++++|...+++....... +.    .+++.+...+...|++++|.+.+++......-..+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            344455667899999999999998775443 32    256777788999999999999999876531112233    346


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC----CCCHHH
Q 010292          230 NTLISVFGRLLLVDHMEAAFQEIKDS----NLS--P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV----MPDTNT  298 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t  298 (513)
                      +.+...+...|++++|...+++..+.    +..  | ...++..+...+...|++++|...+++.....-    .....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            67788899999999999999988752    221  2 245667788889999999999999999765321    112467


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCCccc--chH
Q 010292          299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIR----AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLN  370 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~  370 (513)
                      +..+...+...|++++|...+++..+....++  .....    ..+..+...|+++.+...++............  ...
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            88888999999999999999998876422211  12111    23345778998887766654443322211111  112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292          371 VLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  446 (513)
                      ..+...+...|++++|...+++.....   ..+.. ..++..+..++...|+.++|...+++.......  .    -.+.
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~--~----g~~~  330 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR--T----GFIS  330 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--H----CCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--c----cHHH
Confidence            346788889999999999999876531   11112 235666778888999999999999988653211  1    1223


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC
Q 010292          447 MYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       447 ~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      .+...|  +....+++.+...+
T Consensus       331 ~~~~~g--~~~~~ll~~~~~~~  350 (373)
T 1hz4_A          331 HFVIEG--EAMAQQLRQLIQLN  350 (373)
T ss_dssp             HHHTTH--HHHHHHHHHHHHTT
T ss_pred             HHHHcc--HHHHHHHHHHHhCC
Confidence            344444  56677777776654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.25  E-value=3.9e-10  Score=115.62  Aligned_cols=167  Identities=10%  Similarity=0.044  Sum_probs=148.8

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      |-+..+|+.|..+|.+.|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|++.|++..+.  -+-+...|+.+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            3357789999999999999999999999999987778999999999999999999999999999875  13357899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010292          233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGN  311 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~  311 (513)
                      ..++.+.|++++|++.|++..+... -+...|+.+...|.+.|++++|++.|++..+.  .|+ ...|..+..++...|+
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc
Confidence            9999999999999999999998654 26789999999999999999999999999874  454 7899999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 010292          312 LPRMEKIYELVKH  324 (513)
Q Consensus       312 ~~~a~~~~~~~~~  324 (513)
                      +++|.+.+++..+
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.22  E-value=2.4e-09  Score=102.18  Aligned_cols=230  Identities=10%  Similarity=-0.017  Sum_probs=143.6

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 010292          163 IKFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNT  231 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~  231 (513)
                      ...+...|++++|...|++..+..  .+    ...++..+...|...|++++|+..+++......-.++     ..+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            344567899999999998877542  12    3567888888899999999999988887653111122     356778


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010292          232 LISVFGRLLLVDHMEAAFQEIKDS----NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL  301 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~  301 (513)
                      +...|...|++++|...|++..+.    +-.+ ...+++.+...|...|++++|.+.|++...     .. .....++..
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~  266 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence            888888899999998888877642    1111 235677788888888888888888888765     32 223677788


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 010292          302 LLRGYAHSGNLPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY  377 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  377 (513)
                      +...+.+.|++++|.+.+++..+..    .+.....+..+...|...|+.+...+++..+.+..........+..+...|
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            8888888888888888888876632    112223344444455555553334444444444222111111112244444


Q ss_pred             HhcCCHHHHHHHHHHH
Q 010292          378 AKEDCLEEMEKSINDA  393 (513)
Q Consensus       378 ~~~~~~~~a~~~~~~~  393 (513)
                      ...|++++|.+.|++.
T Consensus       347 ~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          347 ESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH
Confidence            4444444444444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=1e-09  Score=99.66  Aligned_cols=229  Identities=10%  Similarity=0.001  Sum_probs=151.1

Q ss_pred             HccCHHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCCC-cHHHHHHHH
Q 010292          273 TAWMWGKVEEIYQMMKA-------GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH------VDGK-EFPLIRAMI  338 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li  338 (513)
                      ..|++++|+.+|++..+       ........++..+...+...|++++|...++++.+.      +..| ...++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45677777776666544       222234678889999999999999999999988764      2222 456788899


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCC------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHH
Q 010292          339 CAYSKCSVTDRIKKIEALMRLIP------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIM  406 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~  406 (513)
                      ..|...|++++|...++......      ........+..+...|...|++++|.+.+++.++.      +..+....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            99999999998887766555442      11111222335788888999999999999988775      2345556678


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhc-------CCcccH-hhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCC
Q 010292          407 RCIVSSYFRCNAVDKLANFVKRAESA-------GWRLCR-SLYHSKMVMYASQRR------VEEMESVLKEMENYKIDCS  472 (513)
Q Consensus       407 ~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~-~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~  472 (513)
                      ..+...|...|++++|.++++++.+.       ...+.. ..|..+...+...+.      +..+...++.... ..+..
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  251 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV  251 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence            88899999999999999999987643       112222 223333333332222      2222222222211 11234


Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          473 KKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       473 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      ..++..+...|...|++++|.+++++..+.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567888999999999999999999988753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.16  E-value=3.5e-09  Score=89.33  Aligned_cols=164  Identities=10%  Similarity=-0.025  Sum_probs=126.7

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|++.|+++.+.  .+.+...+..+...+...|++++|...++++.+... .+...|..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence            456777888888999999999999888753  345677888888899999999999999998887643 36778888888


Q ss_pred             HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH
Q 010292          270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR  349 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  349 (513)
                      .+...|++++|.+.++++.+.. ..+...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            8889999999999998887643 2367788888888888999999999988887763 3455666666667777776666


Q ss_pred             HHHHHHHHH
Q 010292          350 IKKIEALMR  358 (513)
Q Consensus       350 a~~~~~~~~  358 (513)
                      |...++...
T Consensus       163 A~~~~~~~~  171 (186)
T 3as5_A          163 ALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            665554443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.16  E-value=1.8e-09  Score=98.02  Aligned_cols=229  Identities=10%  Similarity=0.007  Sum_probs=154.3

Q ss_pred             HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CCCC-CHHHHHHH
Q 010292          237 GRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PVMP-DTNTYLLL  302 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~l  302 (513)
                      ...|+++.|+..|++..+.       .......++..+...|...|++++|.+.|++..+.      +-.| ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567787777777776641       22234678899999999999999999999998753      2222 36788999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcc-------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC--CCcccch
Q 010292          303 LRGYAHSGNLPRMEKIYELVKHHV-------DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI----PE--KEYRPWL  369 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~  369 (513)
                      ...+...|++++|.+.+++..+..       .+.....+..+...|...|++++|...++.....    ..  .......
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999987641       1234667888999999999999998887666554    11  1111222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhcCCcc
Q 010292          370 NVLLIRVYAKEDCLEEMEKSINDAFEH-------KTSVTTVRIMRCIVSSYFRCNA------VDKLANFVKRAESAGWRL  436 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~~~~~  436 (513)
                      +..+...|...|++++|.+.+++.++.       ...+.....+..+...+...+.      +..+...++.... ....
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            335888999999999999999998863       1122222233333333333222      2222222222111 1122


Q ss_pred             cHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          437 CRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ....+..+...|...|++++|..+|++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455688889999999999999999998775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.15  E-value=3.3e-09  Score=108.74  Aligned_cols=165  Identities=11%  Similarity=-0.028  Sum_probs=145.2

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +..+|+.|...|.+.|++++|++.|++..+.  -+-+..+|+.+..++.+.|++++|+..|++..+.... +...|+.+.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            7889999999999999999999999999975  1335789999999999999999999999999986532 678999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                      .+|.+.|++++|++.|++..+.  .| +...|..+..++.+.|++++|++.|++..+.. +.+...+..+..+|...|++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence            9999999999999999998874  45 48899999999999999999999999998863 34678899999999999999


Q ss_pred             hHHHHHHHHHHh
Q 010292          348 DRIKKIEALMRL  359 (513)
Q Consensus       348 ~~a~~~~~~~~~  359 (513)
                      ++|.+.++...+
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998887665544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.14  E-value=1.5e-08  Score=89.10  Aligned_cols=197  Identities=10%  Similarity=-0.060  Sum_probs=130.3

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNT  231 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~  231 (513)
                      .|+..+......+.+.|++++|.+.|++..+... ++...+..+..++...|++++|++.|++..+.   .| +...|..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~   81 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG   81 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence            3567777778888888888888888888888776 56677777888888888888888888888763   34 4567778


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC---HHHHHH
Q 010292          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNV-------FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD---TNTYLL  301 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~  301 (513)
                      +..++...|++++|+..|++..+... .+.       ..|..+...+...|++++|++.|++..+.  .|+   ...|..
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~  158 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence            88888888888888888888876532 234       45677777778888888888888888773  454   456666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010292          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE  364 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  364 (513)
                      +..++...|     ..+++.+...+. .+...|.....  ...+.+++|...++...++.+.+
T Consensus       159 l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~  213 (228)
T 4i17_A          159 LGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNR  213 (228)
T ss_dssp             HHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCC
Confidence            666665444     333444444321 22333333222  22233455555555555544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.13  E-value=5.1e-07  Score=91.54  Aligned_cols=348  Identities=9%  Similarity=0.037  Sum_probs=214.0

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCCCHHH
Q 010292          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL---SDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      .+.|..+|..++..+.+.+.++.+..+|+.+...-+.....|..-+..-.+.|+   ++.+.++|++........|++..
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L  141 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL  141 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence            456999999999999999999999999999998765588899999999888898   99999999999863111489999


Q ss_pred             HHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------HccCHHHHHHHHHHHH
Q 010292          229 YNTLISVFGRLLLV--------DHMEAAFQEIKD-SNL-SP-NVFTYNYLIAGYM---------TAWMWGKVEEIYQMMK  288 (513)
Q Consensus       229 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~  288 (513)
                      |..-+....+.++.        +.+.++|+.... .|. .+ +...|...+....         ..++++.+.++|+...
T Consensus       142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence            99888877766654        334578877664 466 55 4578888876543         2345778889998887


Q ss_pred             cCCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHH----------------------------------
Q 010292          289 AGPVMPDTNTYL---LLLRGYA----------HSGNLPRMEKIYEL----------------------------------  321 (513)
Q Consensus       289 ~~g~~p~~~t~~---~ll~~~~----------~~g~~~~a~~~~~~----------------------------------  321 (513)
                      ......-..+|.   .+...+.          ...+++.|...+.+                                  
T Consensus       222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q  301 (679)
T 4e6h_A          222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ  301 (679)
T ss_dssp             TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred             hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence            522111122221   1111100          00112222222222                                  


Q ss_pred             ---------------------------------HHhccCCCcHHHHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCccc
Q 010292          322 ---------------------------------VKHHVDGKEFPLIRAMICAYSKCSVTDRIK-KIEALMRLIPEKEYRP  367 (513)
Q Consensus       322 ---------------------------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~  367 (513)
                                                       .... ++.....|-..+..+...|+.+.|. ++++......+....-
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L  380 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL  380 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence                                             2221 1122333333333344455555553 5544444333333322


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCc-----------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010292          368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK---------TSVT-----------TVRIMRCIVSSYFRCNAVDKLANFVK  427 (513)
Q Consensus       368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~  427 (513)
                      |.  ..+...-..|++++|.++|++++...         ..|+           ...+|...+....+.|+.+.|..+|.
T Consensus       381 wl--~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          381 AF--SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HH--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            32  35556666778888888888777531         0121           23356666777777788888888888


Q ss_pred             HHHhcCCcccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          428 RAESAGWRLCRSLYHSKMVMYASQ-RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       428 ~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ++.+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|...++.....|+.+.|..+|++.....
T Consensus       459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            876651111223333332223333 4478888888877765 34456666677777778888888888888877654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=8.5e-09  Score=81.71  Aligned_cols=129  Identities=13%  Similarity=0.078  Sum_probs=75.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .|..+...+...|++++|.++|+++.+.+..+...|..+...+...|++++|...|+++...  .+.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence            34555556666666666666666666554445556666666666666666666666666543  1334455555666666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..|++++|...++++.+... .+..++..+...+.+.|++++|.+.|+++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            66666666666666655432 2445555555556666666666666655543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.06  E-value=3e-08  Score=90.76  Aligned_cols=96  Identities=14%  Similarity=0.044  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010292          207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRL--L-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI  283 (513)
Q Consensus       207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  283 (513)
                      .+|.+++.+..+.  +++....| .+   + +.  + ++++|...|++.               ...|...|++++|.+.
T Consensus         2 ~~a~~~~~~a~k~--~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   59 (292)
T 1qqe_A            2 SDPVELLKRAEKK--GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDS   59 (292)
T ss_dssp             CCHHHHHHHHHHH--SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHH
T ss_pred             CcHHHHHHHHHHH--hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            3566777777664  33322222 12   1 22  2 477777777665               3356677888888888


Q ss_pred             HHHHHcC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          284 YQMMKAG----PVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       284 ~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      |++....    |-.++ ..+|+.+..+|...|++++|+..+++..+
T Consensus        60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~  105 (292)
T 1qqe_A           60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8776542    21222 46788888888888898888888887665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.03  E-value=6.4e-08  Score=84.91  Aligned_cols=213  Identities=8%  Similarity=-0.024  Sum_probs=145.0

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHH
Q 010292          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLL  302 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l  302 (513)
                      .|...+......+...|++++|+..|++..+....++...+..+..++.+.|++++|++.|++..+..  | +...|..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence            46678888888888999999999999988876654677777778888889999999999999888743  4 46778888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC  382 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  382 (513)
                      ...+...|++++|.+.++...+.. +.+...+..+...+.                             .+...+...|+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~-----------------------------~~g~~~~~~~~  132 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYL-----------------------------KEGQKFQQAGN  132 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-----------------------------HHHHHHHHTTC
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH-----------------------------HHhHHHHHhcc
Confidence            888889999999999998888753 223333333222222                             35556677788


Q ss_pred             HHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHH
Q 010292          383 LEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV  460 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  460 (513)
                      +++|++.|++.++.  .|.  +...+..+...|...|+     .+++++...+. .+...|....  ....+.+++|...
T Consensus       133 ~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~  202 (228)
T 4i17_A          133 IEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDY  202 (228)
T ss_dssp             HHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHH
Confidence            88888888888773  455  45667677766655443     34444444332 1233343333  3345668889999


Q ss_pred             HHHHHhCCCCCCHHHHHHH
Q 010292          461 LKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       461 ~~~m~~~~~~p~~~~~~~l  479 (513)
                      +++..+.+ +-+..+...+
T Consensus       203 ~~~a~~l~-p~~~~~~~~l  220 (228)
T 4i17_A          203 LGEAVTLS-PNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHhhcC-CCCHHHHHHH
Confidence            98888764 3344444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.00  E-value=3.9e-08  Score=77.78  Aligned_cols=131  Identities=14%  Similarity=0.100  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      ..|..+...+...|++++|+.+|+++.+.  .+.+...+..+...+...|++++|...|+++.+.+. .+...+..+...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~   78 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence            35778888899999999999999998865  245677888888999999999999999999887643 367788888889


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      +.+.|++++|.++++++.+.. ..+...+..+...+...|++++|.+.++.+.+.
T Consensus        79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999999999999887743 235778888888999999999999999887764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.97  E-value=5.9e-08  Score=87.15  Aligned_cols=171  Identities=13%  Similarity=0.032  Sum_probs=123.4

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTY  229 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~  229 (513)
                      .+...+-.+...+.+.|++++|.+.|+++.+..+.+   ...+..+..+|.+.|++++|+..|++..+...-.|+ ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            356677777778888899999999999988876545   678888888899999999999999998875211122 3567


Q ss_pred             HHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHH
Q 010292          230 NTLISVFGR--------LLLVDHMEAAFQEIKDSNLSPNVFTY-----------------NYLIAGYMTAWMWGKVEEIY  284 (513)
Q Consensus       230 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~  284 (513)
                      ..+..++..        .|++++|+..|++..+.... +...+                 ..+...|.+.|++++|+..|
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            777778877        88899999999988875322 22222                 34566777888888888888


Q ss_pred             HHHHcCCCC-C-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 010292          285 QMMKAGPVM-P-DTNTYLLLLRGYAHS----------GNLPRMEKIYELVKHH  325 (513)
Q Consensus       285 ~~m~~~g~~-p-~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~  325 (513)
                      +++.+..-. + ....+..+..++...          |++++|...++.+.+.
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            887763211 1 244666677777655          7778888888887765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.96  E-value=5.2e-08  Score=89.18  Aligned_cols=162  Identities=9%  Similarity=-0.049  Sum_probs=104.3

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhc----cCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 010292          163 IKFAGRINNVDLAADLFAEAANK----HLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTL  232 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~l  232 (513)
                      ...|...|++++|.+.|++..+.    |.+  ...+|+.+...|.+.|++++|+..|++......-..+    ..+|+.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44566778888888888776553    211  2567888888888888888888888776643100111    3467777


Q ss_pred             HHHHHhc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH------HHHH
Q 010292          233 ISVFGRL-LLVDHMEAAFQEIKDSNLSP-N----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT------NTYL  300 (513)
Q Consensus       233 i~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~  300 (513)
                      ...|... |++++|+..|++..+..... +    ..+|+.+...+.+.|++++|+..|++..+.......      ..|.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            7777775 88888877777766421100 1    345667777777777777777777777663322111      1456


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 010292          301 LLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      .+..++...|++++|...|++..+
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            666677777777777777777655

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.95  E-value=8.5e-08  Score=82.81  Aligned_cols=170  Identities=12%  Similarity=0.005  Sum_probs=124.5

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHhCC
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA----------------LLGAYMYNGLSDKCQSLFRDLKKEAN  221 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~g  221 (513)
                      .+-.....+.+.|++++|...|++..+..+.+...|..                +..+|.+.|++++|+..|++..+.  
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   83 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--   83 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence            34444556678899999999999888876556667777                888999999999999999999875  


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHHH
Q 010292          222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNTY  299 (513)
Q Consensus       222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~  299 (513)
                      -+-+...|..+..++...|++++|+..|++..+... -+..+|..+...|...|+  .+.+...++....  ..|....+
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~  160 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR  160 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence            244678889999999999999999999999988654 367788888888776654  3455666655543  22333344


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHH
Q 010292          300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI  334 (513)
Q Consensus       300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  334 (513)
                      .....++...|++++|...|++..+.  .|+....
T Consensus       161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~  193 (208)
T 3urz_A          161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ  193 (208)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence            44556667788999999999998875  4554433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.94  E-value=1.8e-08  Score=84.53  Aligned_cols=163  Identities=9%  Similarity=-0.068  Sum_probs=123.6

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-F  236 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~  236 (513)
                      .+..+...+.+.|++++|...|++..+..+.+...|..+...+...|++++|+..|++....   .|+...+..+... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence            45566677888999999999999988876668889999999999999999999999988754   3455443332212 2


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      ...+....|...|++..+... -+...+..+...+...|++++|...|+++.+..-.+ +...+..+...+...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            232344457888888887543 257888888899999999999999999988754322 356788888999999999999


Q ss_pred             HHHHHHHHh
Q 010292          316 EKIYELVKH  324 (513)
Q Consensus       316 ~~~~~~~~~  324 (513)
                      ...|++...
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988876554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.92  E-value=3.7e-08  Score=101.29  Aligned_cols=189  Identities=12%  Similarity=-0.038  Sum_probs=150.9

Q ss_pred             cccCCHHHHHHHHHHHH--------hccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292          167 GRINNVDLAADLFAEAA--------NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      ...|++++|++.+++..        +..+.+...|..+...+...|++++|++.|++..+.  -+-+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            78899999999999998        554557889999999999999999999999999875  24467889999999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010292          239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      .|++++|+..|++..+.... +...|..+..++.+.|++++ ++.|++..+.. .-+...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999876532 67888899999999999999 99999988743 12578899999999999999999999


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHhCC
Q 010292          319 YELVKHHVDGKEFPLIRAMICAYSKCSV-----TDRIKKIEALMRLIP  361 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~  361 (513)
                      |++..+.. +.+...+..+..++...+.     .+...++.+.+....
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99887753 2345667677777766554     345556666666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.92  E-value=2.6e-07  Score=83.28  Aligned_cols=57  Identities=9%  Similarity=0.081  Sum_probs=24.8

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLK  217 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  217 (513)
                      .+..++...|++++|++++.+....+.  .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444444444444444444433332  134444444444444444444444444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.91  E-value=8.6e-08  Score=87.40  Aligned_cols=177  Identities=10%  Similarity=-0.076  Sum_probs=130.4

Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      .+.+++...    .+.+...+..+...+.+.|++++|...|++..+..+.+...+..+...+.+.|++++|...|++...
T Consensus       104 ~l~~~l~~~----lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          104 AIRALLDXV----LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHH----SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             HHHHHHHHH----cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            444444443    2445666777778888889999999999988887777888888888888899999999998888875


Q ss_pred             hCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCH
Q 010292          219 EANISPSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDT  296 (513)
Q Consensus       219 ~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~  296 (513)
                      .   .|+........ ..+...++.+.|...|++..+... .+...+..+...+...|++++|...|+++.+..-. .+.
T Consensus       180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~  255 (287)
T 3qou_A          180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG  255 (287)
T ss_dssp             G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred             h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence            3   46654333322 335667778888888888877643 36778888888888888888888888888774311 125


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          297 NTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      ..+..+...+...|+.++|...+++..
T Consensus       256 ~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          256 QTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            678888888888888888887776644

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.89  E-value=2.8e-07  Score=83.05  Aligned_cols=184  Identities=12%  Similarity=-0.011  Sum_probs=138.1

Q ss_pred             HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292          175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      |+..|++....+.++..++..+..++...|++++|++++.+.... |- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            778888887766556666678889999999999999999998653 22 1366788899999999999999999999998


Q ss_pred             HCCCCC-----CHHHHHHHHHHH--HHcc--CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          254 DSNLSP-----NVFTYNYLIAGY--MTAW--MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       254 ~~g~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      +.  .|     +..+...|..++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            74  45     356666666663  3334  899999999999875  36644555666689999999999999998766


Q ss_pred             cc---------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 010292          325 HV---------DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY  365 (513)
Q Consensus       325 ~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  365 (513)
                      ..         -+.+..+...+|......|+  .+.+.++.+.+..+.+.
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            41         14467777566666666675  56666666666655443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.85  E-value=3.5e-06  Score=76.57  Aligned_cols=171  Identities=9%  Similarity=-0.048  Sum_probs=111.5

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHHHhccCCCHhHHHHHHHHH----HHc---
Q 010292          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN--NVDLAADLFAEAANKHLKTIGTYNALLGAY----MYN---  203 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----~~~---  203 (513)
                      ..+.|+..++.+...    .|-+..+|+.--.++...|  ++++++++++.+...++++..+|+.--..+    ...   
T Consensus        48 ~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           48 YSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             CSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence            445677777666654    2335666676666666667  888888888888877776777777665555    444   


Q ss_pred             CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-----
Q 010292          204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD--HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-----  276 (513)
Q Consensus       204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----  276 (513)
                      +++++++++++.+.+.  -+-|-.+|+.-.-.+.+.|.++  ++++.++++.+..+ -|...|+.-...+.+.|.     
T Consensus       124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence            6777888888888764  2456677777766677777777  77777777777655 367777766666666554     


Q ss_pred             -HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292          277 -WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       277 -~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  311 (513)
                       ++++++.++++...... |...|+.+-..+.+.|+
T Consensus       201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence             55566666655553322 45555555555555554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.84  E-value=4e-06  Score=76.24  Aligned_cols=221  Identities=6%  Similarity=-0.082  Sum_probs=157.7

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc--
Q 010292          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG--LSDKCQSLFRDLKKEANISPSIVTYNTLISVF----GRL--  239 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~----~~~--  239 (513)
                      +....++|+++++.+...++.+..+|+.--.++...|  ++++++++++.+...  -+-+..+|+.--..+    ...  
T Consensus        45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccc
Confidence            3344578999999999988878889999888888888  999999999999975  234455666554444    455  


Q ss_pred             -CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----
Q 010292          240 -LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG--KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----  311 (513)
Q Consensus       240 -g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----  311 (513)
                       +++++++.+++++.+... .|..+|+.-...+.+.|.++  ++++.++++.+.... |...|+.-...+...+.     
T Consensus       123 ~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred             cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence             789999999999998765 48899999998899999988  999999999986644 77788777777777666     


Q ss_pred             -hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cc-cchHHHHHHHHHhcCCHHHH
Q 010292          312 -LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE---YR-PWLNVLLIRVYAKEDCLEEM  386 (513)
Q Consensus       312 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a  386 (513)
                       ++++++.++.++... +.|...|+-+-..+.+.|.....  +.....+....+   .. +.....+...|.+.|+.++|
T Consensus       201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A  277 (306)
T 3dra_A          201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQ--LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES  277 (306)
T ss_dssp             HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGG--GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHH--HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence             788888888888763 45778888777777777753321  122222221111   11 11111355555566666666


Q ss_pred             HHHHHHHHh
Q 010292          387 EKSINDAFE  395 (513)
Q Consensus       387 ~~~~~~~~~  395 (513)
                      .++++.+.+
T Consensus       278 ~~~~~~l~~  286 (306)
T 3dra_A          278 RTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.84  E-value=4.1e-07  Score=81.59  Aligned_cols=189  Identities=10%  Similarity=0.004  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC-HHH
Q 010292          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD-TNT  298 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~t  298 (513)
                      .+...+..+...+.+.|++++|+..|+++.+.... +   ...+..+..+|.+.|++++|...|++..+..- .|. ...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            45667777888888999999999999999876432 3   56788888889999999999999999887421 122 456


Q ss_pred             HHHHHHHHHh--------cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010292          299 YLLLLRGYAH--------SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       299 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      +..+..++..        .|++++|...|+.+.+... .+......+.....          +...+..       .+ +
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~----------~~~~~~~-------~~-~  152 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRE----------LRAKLAR-------KQ-Y  152 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHH----------HHHHHHH-------HH-H
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHH----------HHHHHHH-------HH-H
Confidence            7777778888        8899999999998887532 22222222111110          0000000       01 1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcC
Q 010292          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRC----------NAVDKLANFVKRAESAG  433 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~  433 (513)
                       .+...|...|++++|+..|+++++..... .....+..+..+|...          |++++|...++.+.+..
T Consensus       153 -~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          153 -EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence             46777888888888888888887754322 2344566667777655          77777777777776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.84  E-value=2.4e-07  Score=81.12  Aligned_cols=192  Identities=10%  Similarity=-0.015  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN  230 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~  230 (513)
                      +...+-.+...+.+.|++++|...|+++.+..+.+   ...+..+..+|.+.|++++|++.|+++.+...-.+.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34455566677788899999999999888765432   4577788888888999999999999888652111221 2344


Q ss_pred             HHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010292          231 TLISVFGR------------------LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV  292 (513)
Q Consensus       231 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  292 (513)
                      .+..++.+                  .|++++|...|+++.+..+. +...+......          ..+...+     
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~-----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence            44444443                  35566666666666654211 11111111000          0000000     


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 010292          293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY  365 (513)
Q Consensus       293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  365 (513)
                         ......+...+.+.|++++|...|+.+.+......  ...+..+..+|.+.|+.+.|.+.++.+....+.+.
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence               00112445567777777777777777776532111  23566677777777777777777776666555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.83  E-value=4.3e-08  Score=79.72  Aligned_cols=144  Identities=7%  Similarity=-0.110  Sum_probs=96.5

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      |-..+...|++++|++.++......+.+...+..+...|.+.|++++|++.|++..+.  -+-+..+|..+..++.+.|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence            3445566778888888887776644335666777788888888888888888888764  23456777888888888888


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHcCCCCC-CHHHHHHHHHHHHhcC
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMP-DTNTYLLLLRGYAHSG  310 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~t~~~ll~~~~~~g  310 (513)
                      +++|+..|++..+... -+..+|..+...|.+.|++++|.+. +++..+  +.| +...|......+...|
T Consensus        81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence            8888888888776543 2567777777777777777665544 466555  234 3555655555555554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.81  E-value=4.7e-07  Score=83.41  Aligned_cols=205  Identities=8%  Similarity=-0.013  Sum_probs=110.8

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010292          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE  282 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (513)
                      .|++++|.+++++..+..  +..      +   +...++++.|...|++.               ...|...|++++|.+
T Consensus         4 ~~~~~eA~~~~~~a~k~~--~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL--KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc--ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            456677777777666531  111      0   11146666666666554               335666777777777


Q ss_pred             HHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          283 IYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       283 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      .|.+....    |-.. -..+|+.+...|...|++++|...|++..+.               +...|+...+..+    
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~a~~----  118 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVENGTPDTAAMA----  118 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTTTCHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHcCCHHHHHHH----
Confidence            77665431    1111 1346777777888888888888888776542               1122222111111    


Q ss_pred             HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 010292          358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-  432 (513)
Q Consensus       358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-  432 (513)
                                  +..+...|.. |++++|++.|++.+...    .......+++.+...|...|++++|+..+++..+. 
T Consensus       119 ------------~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  185 (307)
T 2ifu_A          119 ------------LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY  185 (307)
T ss_dssp             ------------HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                        1124444445 66666666665544311    11111345666666777777777777777765432 


Q ss_pred             ---CCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          433 ---GWRLC-RSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       433 ---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                         +..+. ...+..+...+...|++++|...|++..
T Consensus       186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence               11111 1244455555666677777777777766

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.80  E-value=1.6e-07  Score=96.62  Aligned_cols=175  Identities=12%  Similarity=-0.032  Sum_probs=144.2

Q ss_pred             cCChHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh
Q 010292          131 GSRPRLALEVLNWRRRQ----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS  206 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~  206 (513)
                      .++++.|++.++...+.    .....+.+...+..+..++.+.|++++|.+.|++..+.++.+...|..+..+|...|++
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  483 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY  483 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence            56889999999887610    00113457788999999999999999999999999998877999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292          207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      ++|++.|++..+.  -+-+...|..+..++.+.|++++ +..|++..+... -+...|..+..++.+.|++++|++.|++
T Consensus       484 ~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          484 DSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             HHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999875  23456889999999999999999 999999998654 3678899999999999999999999999


Q ss_pred             HHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010292          287 MKAGPVMPD-TNTYLLLLRGYAHSGN  311 (513)
Q Consensus       287 m~~~g~~p~-~~t~~~ll~~~~~~g~  311 (513)
                      ..+  +.|+ ...+..+..++...++
T Consensus       560 al~--l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          560 VPP--TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             SCT--TSTTHHHHHHHHHHHTC----
T ss_pred             hcc--cCcccHHHHHHHHHHHHccCC
Confidence            887  3465 5677777777766554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.78  E-value=2.6e-07  Score=93.26  Aligned_cols=152  Identities=9%  Similarity=-0.126  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010292          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF  249 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  249 (513)
                      |++++|.+.|++..+..+.+...|..+...+...|++++|++.|++..+.  .+-+...|..+..++...|++++|.+.|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34445555555544443334445555555555555555555555555432  1223444455555555555555555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 010292          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS---GNLPRMEKIYELVKHH  325 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~  325 (513)
                      ++..+... -+...|..+..+|.+.|++++|.+.|++..+.. .-+...+..+...+...   |+.++|.+.+++..+.
T Consensus        81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            55444322 134445555555555555555555555544421 11244444555555555   5555555555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.74  E-value=8e-07  Score=76.62  Aligned_cols=163  Identities=10%  Similarity=0.016  Sum_probs=121.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHH----------------HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTK----------------GIKFAGRINNVDLAADLFAEAANKHLKTIGTYN  194 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (513)
                      .++++.|...|+...+..    |-+...|..                +..+|.+.|++++|...|++..+..+.+...|.
T Consensus        17 ~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   92 (208)
T 3urz_A           17 AGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE   92 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            467788888887776532    224455555                888999999999999999999998877999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010292          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL--VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM  272 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (513)
                      .+...+...|++++|++.|++..+.  -+-+..+|..+..++...|+  .+.+...++....  ..|....+.....++.
T Consensus        93 ~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~  168 (208)
T 3urz_A           93 ACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKL  168 (208)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence            9999999999999999999999975  24467788888888866554  4455666666542  2233334444566677


Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL  303 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  303 (513)
                      ..|++++|...|++..+  +.|+......+.
T Consensus       169 ~~~~~~~A~~~~~~al~--l~P~~~~~~~l~  197 (208)
T 3urz_A          169 FTTRYEKARNSLQKVIL--RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence            78999999999999988  568865544433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.74  E-value=1.6e-05  Score=78.07  Aligned_cols=361  Identities=9%  Similarity=0.002  Sum_probs=223.4

Q ss_pred             chhHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC-HHHHHHHHHHHHhc-c--CCCHhHH
Q 010292          119 NGYAFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN-VDLAADLFAEAANK-H--LKTIGTY  193 (513)
Q Consensus       119 ~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-~--~~~~~~~  193 (513)
                      -..+|...+..+. +..+.+..+|+....     ..|+...|...+....+.+. .+....+|+..... |  +.+...|
T Consensus        14 aR~vyer~l~~~P~~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW   88 (493)
T 2uy1_A           14 PSAIMEHARRLYMSKDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY   88 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence            4567888888885 788889999987654     34699999999988877764 46677888887764 3  2377888


Q ss_pred             HHHHHHHH----HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHCC
Q 010292          194 NALLGAYM----YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------------LLLVDHMEAAFQEIKDSN  256 (513)
Q Consensus       194 ~~li~~~~----~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g  256 (513)
                      ...+..+.    ..|+.+.+.++|+..... ...--...|......-..             .+.+..|..+++++...-
T Consensus        89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~  167 (493)
T 2uy1_A           89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI  167 (493)
T ss_dssp             HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            88887654    346788999999999852 111112233322221111             112333444454444210


Q ss_pred             CCCCHHHHHHHHHHHHHcc--C-----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292          257 LSPNVFTYNYLIAGYMTAW--M-----WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       257 ~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                      ...+...|...+..--..+  -     .+.+..+|+++.... .-+...|...+.-+.+.|+++.|..++++....  +.
T Consensus       168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~  244 (493)
T 2uy1_A          168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD  244 (493)
T ss_dssp             HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred             hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence            0013445655554422211  1     345678899887743 345778888888889999999999999999987  44


Q ss_pred             cHHHHHHHHHHHHhcCChhHH-HHHHHHHHhCC-------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010292          330 EFPLIRAMICAYSKCSVTDRI-KKIEALMRLIP-------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT  401 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (513)
                      +...+..    |......+.. ..+.+.+....       ........+...+..+.+.+..+.|..+|+.. ....  .
T Consensus       245 ~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~  317 (493)
T 2uy1_A          245 GMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--V  317 (493)
T ss_dssp             SSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--C
T ss_pred             cHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--C
Confidence            4443332    2222111111 11111110000       00000011223555556678899999999988 3222  2


Q ss_pred             hHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          402 TVRIMRCIVSSYFR-CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY  480 (513)
Q Consensus       402 ~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  480 (513)
                      ...+|......-.. .++.+.|..+|+...+.... +...+...++...+.|+.+.|..+|+...     .....|...+
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~  391 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI  391 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            34445432222222 33699999999988764322 34556677888888999999999999973     2567888888


Q ss_pred             HHHHhcCCHhHHHHHHHHHHH
Q 010292          481 YAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ..-...|+.+.+.++++++.+
T Consensus       392 ~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          392 EYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            888889999999998888764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.73  E-value=2.5e-06  Score=74.55  Aligned_cols=190  Identities=11%  Similarity=-0.050  Sum_probs=123.4

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--FTYN  265 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~  265 (513)
                      +...+..+...+.+.|++++|+..|+++.+...-.|. ...+..+..++.+.|++++|+..|+++.+....-..  .++.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3456667778889999999999999999875211121 357888899999999999999999999875432111  2444


Q ss_pred             HHHHHHHH------------------ccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292          266 YLIAGYMT------------------AWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       266 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      .+..++.+                  .|++++|...|+++.+..  |+. ..+......          ..+...+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence            44444443                  466777777777777632  332 111111100          00001110   


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292          327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                           .....+...|.+.|+++.|...++.+.+..+.+. .+.....+..+|.+.|+.++|.+.++.+...+.
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence                 1123456778899999999888777666544432 222233689999999999999999998887543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.73  E-value=6.8e-06  Score=75.00  Aligned_cols=199  Identities=7%  Similarity=-0.098  Sum_probs=122.9

Q ss_pred             ccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHhcccCCHHHHHHHHHHHHhccCCCH--
Q 010292          116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY---TKGIKFAGRINNVDLAADLFAEAANKHLKTI--  190 (513)
Q Consensus       116 ~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--  190 (513)
                      ..|+..++..+...+.-.++.   ++.    ..   ...+...+   ...+..+...|++++|.+++++..+....+.  
T Consensus        42 ~~~~~~~l~~i~~~l~~~~~~---~~~----~~---~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~  111 (293)
T 3u3w_A           42 VYPSMDILQGIAAKLQIPIIH---FYE----VL---IYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF  111 (293)
T ss_dssp             CCCCHHHHHHHHHHHTCCTHH---HHH----TT---TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH
T ss_pred             CCCCHHHHHHHHHHhCcCHHH---HhC----CC---CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH
Confidence            367888888888777766542   221    11   11123322   3336667788888888888888776433221  


Q ss_pred             ----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----C-CC
Q 010292          191 ----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKD----S-NL  257 (513)
Q Consensus       191 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~  257 (513)
                          ..+..+...+...|++++|++.|++......-.++    ..+|+.+..+|...|++++|+..|++..+    . +.
T Consensus       112 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  191 (293)
T 3u3w_A          112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence                12334556666667888888888887763111222    23577788888888888888888877763    1 11


Q ss_pred             CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 010292          258 SPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMPD-TNTYLLLLRGYAHSGN-LPRMEKIYELVKH  324 (513)
Q Consensus       258 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~  324 (513)
                      .+. ..+|..+...|.+.|++++|.+.+++..+    .+..+. ..+|..+..++.+.|+ +++|.+.+++...
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            111 23667777777788888888877776543    222222 5667777777777774 5777777766543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.73  E-value=1e-06  Score=81.17  Aligned_cols=165  Identities=8%  Similarity=-0.018  Sum_probs=107.6

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccC----C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCC-CHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHL----K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA---NISP-SIV  227 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~p-~~~  227 (513)
                      .|......|...|++++|.+.|.+..+...    +  -..+|+.+...|.+.|++++|++.|++.....   |-.. -..
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344455667777888888888877655321    1  14577778888888888888888888765421   1111 134


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCCC-HH
Q 010292          228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-----NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMPD-TN  297 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~  297 (513)
                      +++.+...|.. |++++|+..|++..+.....     ...+++.+...|.+.|++++|++.|++....    +..+. ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            66777777777 88888888887766421100     1356777777888888888888888776641    21111 22


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          298 TYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       298 t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .+..+..++...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            55566666777788888888887776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.73  E-value=2.5e-05  Score=71.80  Aligned_cols=167  Identities=9%  Similarity=-0.085  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHHH
Q 010292          174 LAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL-L-LVDHMEAAFQ  250 (513)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~  250 (513)
                      +|+++++.+...++.+..+|+.--..+...| .+++++++++.+...  .+-+..+|+.-...+.+. + ++++++++++
T Consensus        72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            4444444444444434444444444444444 244444444444432  122333444433333333 3 4444444444


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-------hHHH
Q 010292          251 EIKDSNLSPNVFTYNYLIAGYMTAWMWG--------KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-------LPRM  315 (513)
Q Consensus       251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~a  315 (513)
                      ++.+... .|..+|+.-...+.+.|.++        ++++.++++.+.... |...|+.-...+.+.+.       ++++
T Consensus       150 k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eE  227 (349)
T 3q7a_A          150 GSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDE  227 (349)
T ss_dssp             HHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred             HHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHH
Confidence            4444332 24444444444443333333        555555555553322 44455554444444443       4566


Q ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010292          316 EKIYELVKHHVDGKEFPLIRAMICAYSKCS  345 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  345 (513)
                      ++.++..+.. .+.|...|+-+-..+.+.|
T Consensus       228 Le~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          228 LIYILKSIHL-IPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence            6666665554 2345666655555555444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.71  E-value=1.7e-06  Score=74.82  Aligned_cols=176  Identities=10%  Similarity=-0.119  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHH
Q 010292          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSL  212 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~  212 (513)
                      |+..|+...+.+      +...+..+-..|...+++++|.+.|++..+.|  +...+..|...|.. +    +.++|++.
T Consensus         5 A~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            5 PGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             TTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             HHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            455565555543      77888888888888999999999999988764  66778888888877 6    89999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----ccCHHHHHHH
Q 010292          213 FRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMT----AWMWGKVEEI  283 (513)
Q Consensus       213 ~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~  283 (513)
                      |++..+.    -+...+..|...|..    .+++++|...|++..+.|.. .+...+..|-..|..    .+++++|.++
T Consensus        76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            9998763    367788888888877    78999999999998876531 026788888888888    7789999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhccC
Q 010292          284 YQMMKAGPVMPDTNTYLLLLRGYAHS-G-----NLPRMEKIYELVKHHVD  327 (513)
Q Consensus       284 ~~~m~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~~  327 (513)
                      |++..+.  ..+...+..|-..|... |     ++++|.+.|+...+.|.
T Consensus       152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9998875  23455677777777653 3     88999999998888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.70  E-value=1.6e-06  Score=79.18  Aligned_cols=200  Identities=9%  Similarity=-0.052  Sum_probs=114.2

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH------
Q 010292          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI------  190 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------  190 (513)
                      .|+..++..+...++-.++.-......-.       +.....+...+..+...|++++|.+.+++..+......      
T Consensus        43 ~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~  115 (293)
T 2qfc_A           43 YPSMDILQGIAAKLQIPIIHFYEVLIYSD-------IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFL  115 (293)
T ss_dssp             CCCHHHHHHHTTTSCCCTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCcCHHHHhccccccc-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHH
Confidence            46666655555555544443222221110       11233445566677777888888877776665433211      


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-----
Q 010292          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPN-----  260 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----  260 (513)
                      ..+..+...+...|++++|++.|++......  ..+.  ..+|+.+...|...|++++|...|++..+. ...|+     
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~  195 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence            2233445556666777788777777664210  1111  346777777777777777777777776521 00111     


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010292          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRM-EKIYELVK  323 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~  323 (513)
                      ..+|+.+...|.+.|++++|.+.+++..+.    +... -..+|..+...+.+.|++++| ...++...
T Consensus       196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            146677777777777777777777765431    1111 155667777777777777777 55565544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.69  E-value=6.6e-07  Score=90.24  Aligned_cols=153  Identities=8%  Similarity=-0.094  Sum_probs=117.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++.+.|.+.++...+.    .+-+...|..+...+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|.+
T Consensus         3 g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4566777777766543    234678889999999999999999999999998877688899999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHH
Q 010292          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WMWGKVEEIYQMMK  288 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~  288 (513)
                      .|++..+.  .+.+...|..+..++.+.|++++|.+.|++..+... -+...+..+...+...   |++++|.+.+++..
T Consensus        79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999875  244578899999999999999999999999887643 3678888899999999   99999999999987


Q ss_pred             cCC
Q 010292          289 AGP  291 (513)
Q Consensus       289 ~~g  291 (513)
                      +.+
T Consensus       156 ~~~  158 (568)
T 2vsy_A          156 AQG  158 (568)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            743

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.68  E-value=6.7e-06  Score=75.01  Aligned_cols=128  Identities=7%  Similarity=-0.037  Sum_probs=95.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----c-CCccc-HhhHH
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTT----VRIMRCIVSSYFRCNAVDKLANFVKRAES----A-GWRLC-RSLYH  442 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~  442 (513)
                      +...+...|++++|+..|++.+.......+    ..+++.+...|...|++++|..+++++.+    . +..+. ..+|.
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            566667778999999999988873222222    34688899999999999999999998763    1 22222 34678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCC-HhHHHHHHHHHH
Q 010292          443 SKMVMYASQRRVEEMESVLKEMENY----KIDCS-KKTFWIMYYAYATCGQ-RRKVNQVLGLMC  500 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~  500 (513)
                      .+...|.+.|++++|...+++..+.    +..+. ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            8888999999999999999877642    22222 6788899999999995 699999888764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.68  E-value=7.2e-08  Score=78.35  Aligned_cols=113  Identities=10%  Similarity=0.039  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      .+...|.+.|++++|++.|++.++.  .|.+...|..+...|...|++++|...|++..+.... +...|..+...|.+.
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKN  112 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            4777788888888888888888774  3556667888888888888888888888888765532 466777788888888


Q ss_pred             CCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          452 RRVEEMESV-LKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       452 g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      |++++|.+. +++..+.+ +-+...|......+...|+
T Consensus       113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            888766654 46666654 4456677766666666664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.67  E-value=1.5e-06  Score=71.48  Aligned_cols=127  Identities=7%  Similarity=-0.108  Sum_probs=72.8

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|++.|++..+.  .+.+...|..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence            44455555666666666666666666655445666666666666666666666666666653  1334556666666666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHH
Q 010292          238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI--AGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m  287 (513)
                      ..|++++|...|++..+... .+...+..+.  ..+.+.|++++|.+.++..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            66666666666666655432 1333332222  2244555666666555543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.65  E-value=9.4e-07  Score=80.45  Aligned_cols=164  Identities=7%  Similarity=-0.090  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 010292          296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR  375 (513)
Q Consensus       296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  375 (513)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+...|...|+++                           
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~---------------------------  168 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSE---------------------------  168 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHH---------------------------
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHH---------------------------
Confidence            4445555556666666666666666665542 223444444555555555444                           


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010292          376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  455 (513)
                               +|...+++......  ............+...++.+.|...+++..+... -+...+..+...|...|+++
T Consensus       169 ---------~A~~~l~~~~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~  236 (287)
T 3qou_A          169 ---------DAEAVLXTIPLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNE  236 (287)
T ss_dssp             ---------HHHHHHTTSCGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             ---------HHHHHHHhCchhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHH
Confidence                     44444444333211  1111111112223334444445555554444332 13444455555555555555


Q ss_pred             HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          456 EMESVLKEMENYKID-CSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      +|...|+++.+.+-. .+...+..++..|...|+.++|...+++.
T Consensus       237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            555555555543311 11345555555555555555555555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.64  E-value=6.6e-07  Score=74.82  Aligned_cols=159  Identities=8%  Similarity=-0.056  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      ..+..+...+...|++++|+..|++..+.  -+-+...+..+...+.+.|++++|+..|++..+..  |+...+..+...
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~   82 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL   82 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence            45566777888999999999999987754  24466788889999999999999999999887653  344433332212


Q ss_pred             -HHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHhcCCh
Q 010292          271 -YMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       271 -~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~  347 (513)
                       +.+.++..+|...|++..+.  .| +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence             22333445578888887763  34 47888888899999999999999999888865432 355677777888888877


Q ss_pred             hHHHHHHH
Q 010292          348 DRIKKIEA  355 (513)
Q Consensus       348 ~~a~~~~~  355 (513)
                      +++...++
T Consensus       161 ~~A~~~y~  168 (176)
T 2r5s_A          161 NAIASKYR  168 (176)
T ss_dssp             CHHHHHHH
T ss_pred             CcHHHHHH
Confidence            76665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.62  E-value=2.4e-06  Score=66.15  Aligned_cols=98  Identities=12%  Similarity=0.065  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...+..+...+.+.|++++|.++|+++.+....+..+|..+...+.+.|++++|+.+|+++.+.  .+.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence            3455555566666666666666666666554445556666666666666666666666666543  13345555566666


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 010292          236 FGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~  255 (513)
                      +...|++++|...|+++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            66666666666666665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.58  E-value=5.2e-07  Score=75.50  Aligned_cols=122  Identities=9%  Similarity=0.077  Sum_probs=89.3

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 010292          166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-FGRLLLV--  242 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~--  242 (513)
                      +...|++++|.+.++...+..+.+...|..+...|...|++++|+..|++..+..  +.+...+..+..+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            3556788888888888777766677888888888888888888888888887641  3456677777777 6677887  


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      ++|...|++..+... -+...|..+...|...|++++|...|++..+.
T Consensus        98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            888888888877543 25677777778888888888888888887764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.57  E-value=6.6e-06  Score=70.89  Aligned_cols=128  Identities=9%  Similarity=-0.060  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM  272 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (513)
                      +..+...+...|++++|++.|++..     .|+...|..+...+.+.|++++|+..|++..+... .+...|..+..+|.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence            4445555666666666666666542     34566666666666666666666666666665432 24566666666666


Q ss_pred             HccCHHHHHHHHHHHHcCC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292          273 TAWMWGKVEEIYQMMKAGP--------------VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g--------------~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      ..|++++|.+.|++..+..              ..| ....+..+..++...|++++|.+.|+...+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            6777777777766665532              111 13566777777777777777777777777653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.57  E-value=7.2e-07  Score=76.30  Aligned_cols=158  Identities=11%  Similarity=-0.023  Sum_probs=104.9

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHHHHHHHHHHhcCCh
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTYNTLISVFGRLLLV  242 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~  242 (513)
                      ...|++++|.++++.+.........++..+...+...|++++|.+.|++....   .|..+ ...+++.+...+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45688888888555554322125677888888888888888888888877652   11111 235677777888888888


Q ss_pred             hHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCC-CCHHHHHHHHHHHHhcCC
Q 010292          243 DHMEAAFQEIKDS----NLSP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVM-PDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       243 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~-p~~~t~~~ll~~~~~~g~  311 (513)
                      ++|...+++..+.    +-.+  ...++..+...+...|++++|.+.+++...    .+-. .-..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888888876642    2111  234577777888888888888888887653    1211 113345677778888888


Q ss_pred             hHHHHHHHHHHHh
Q 010292          312 LPRMEKIYELVKH  324 (513)
Q Consensus       312 ~~~a~~~~~~~~~  324 (513)
                      +++|.+.+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=3e-06  Score=66.24  Aligned_cols=117  Identities=10%  Similarity=-0.036  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+...|++++|.+.|++.....+.+...|..+...+...|++++|++.+++....  .+.+...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence            344445555555556666666665555544445555555555555555666666555555543  122344555555555


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      .+.|++++|...|++..+... .+...+..+..++.+.|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence            555555555555555554322 134444444444444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.54  E-value=3.7e-06  Score=65.70  Aligned_cols=96  Identities=9%  Similarity=-0.063  Sum_probs=58.7

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+......|.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|++.|++..+.  -+.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence            34445555666666666666666666655556666666666666666666666666666643  1334556666666666


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 010292          238 RLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~  255 (513)
                      ..|++++|+..|++..+.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            666666666666666553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.54  E-value=1.7e-05  Score=68.37  Aligned_cols=142  Identities=9%  Similarity=-0.034  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 010292          174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----LVDHMEAAF  249 (513)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~  249 (513)
                      +|++.|++..+.|  +...+..|...|...+++++|++.|++..+. |   +...+..|...|.. +    +.++|...|
T Consensus         4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4666777766653  6777888888888888888888888888764 3   66777777777776 6    788888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 010292          250 QEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAH----SGNLPRMEKIYE  320 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~  320 (513)
                      ++..+.|   +...+..|-..|..    .+++++|+++|++..+.|.. -+...+..|-..|..    .+++++|.+.|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8887754   56677777777766    67888888888888776521 016677777777777    677888888887


Q ss_pred             HHHhc
Q 010292          321 LVKHH  325 (513)
Q Consensus       321 ~~~~~  325 (513)
                      +..+.
T Consensus       154 ~A~~~  158 (212)
T 3rjv_A          154 GSSSL  158 (212)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            77665

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.53  E-value=4.5e-05  Score=74.84  Aligned_cols=328  Identities=7%  Similarity=-0.073  Sum_probs=199.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISP-SIVTYNTLI  233 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p-~~~~~~~li  233 (513)
                      ..+|...+..+-. |+++.+..+|++.... .|++..|..-+....+.+. .+....+|+......|..| +...|...+
T Consensus        15 R~vyer~l~~~P~-~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi   92 (493)
T 2uy1_A           15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI   92 (493)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            3444555555443 8999999999998884 4688999999988877763 4678889998887656434 667888877


Q ss_pred             HHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHcCCCCCCH
Q 010292          234 SVFG----RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-------------AWMWGKVEEIYQMMKAGPVMPDT  296 (513)
Q Consensus       234 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~g~~p~~  296 (513)
                      ..+.    ..++++.+..+|++.+.....--...|......-..             .+.+..|..+++++...--..+.
T Consensus        93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~  172 (493)
T 2uy1_A           93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV  172 (493)
T ss_dssp             HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred             HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence            7654    346788999999999974221112333333221111             12233445555554431000133


Q ss_pred             HHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010292          297 NTYLLLLRGYAHSG--N-----LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL  369 (513)
Q Consensus       297 ~t~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  369 (513)
                      ..|...+.--...+  -     .+.+..+|+++... .+.....|...+.-+.+.|+.+.|..+++..... +.+..-|.
T Consensus       173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~  250 (493)
T 2uy1_A          173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL  250 (493)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred             HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence            45555444432221  1     24567788888875 3456778888888888999999998887766666 44332221


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010292          370 NVLLIRVYAKEDCLEEMEKSINDAFEHK-----------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR  438 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  438 (513)
                            .|....+.++.   ++.+...-           .......+|...+....+.++.+.|..+|+++ +.. ..+.
T Consensus       251 ------~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~  319 (493)
T 2uy1_A          251 ------YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP  319 (493)
T ss_dssp             ------HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred             ------HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence                  22222111221   22222110           00112345777777777788999999999998 321 1233


Q ss_pred             hhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          439 SLYHSKMVMYAS-QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       439 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..|......-.. .++.+.|..+|+...+.- +-+...|...++...+.|+.+.|..+|++.
T Consensus       320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344322222222 336999999999988753 334556777888888999999999998875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.52  E-value=2.2e-06  Score=67.41  Aligned_cols=99  Identities=10%  Similarity=-0.045  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      .+...+..+...+.+.|++++|.+.|++..+....+...|..+...+...|++++|++.|++..+.  .+.+...+..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence            344555555555566666666666666655544445555555556666666666666666655543  123445555555


Q ss_pred             HHHHhcCChhHHHHHHHHHHH
Q 010292          234 SVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      .++.+.|++++|...|++..+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            555555566666555555554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.50  E-value=2.9e-06  Score=68.61  Aligned_cols=101  Identities=4%  Similarity=0.013  Sum_probs=56.0

Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                      |.+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++....+ +-+...|..+
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l  110 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence            334444555555555666666666666655544321 34555555555666666666666666655544 3344555556


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHC
Q 010292          480 YYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       480 i~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      ..+|.+.|++++|.+.|++..+.
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            66666666666666666655543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.50  E-value=1.1e-05  Score=69.38  Aligned_cols=129  Identities=12%  Similarity=-0.024  Sum_probs=105.1

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+...|++++|.+.|++...   ++...|..+...|...|++++|++.|++..+.  .+.+...|..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence            345566677888999999999988742   37788999999999999999999999998875  2456788889999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292          238 RLLLVDHMEAAFQEIKDSNLSP---------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      ..|++++|...|++..+.....               ....|..+..+|.+.|++++|.+.|++..+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            9999999999999988753221               12678888899999999999999999988743

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.49  E-value=4.3e-05  Score=69.63  Aligned_cols=160  Identities=5%  Similarity=-0.132  Sum_probs=116.2

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL---SP  259 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p  259 (513)
                      ....+...+..+...|++++|.+.+.+..+..  +.+.      ..+..+...+...|++++|+..|++..+...   .+
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            44566677888999999999999999888642  2222      2344466677888999999999999875321   12


Q ss_pred             C--HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----C
Q 010292          260 N--VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMP--DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV----D  327 (513)
Q Consensus       260 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~  327 (513)
                      .  ..+|+.+...|...|++++|.+.|++..+    .+-.+  ...+|..+...|...|++++|.+.+++..+..    .
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence            2  45889999999999999999999998763    11111  12688889999999999999999998876531    1


Q ss_pred             CC-cHHHHHHHHHHHHhcCChhHH
Q 010292          328 GK-EFPLIRAMICAYSKCSVTDRI  350 (513)
Q Consensus       328 ~~-~~~~~~~li~~~~~~g~~~~a  350 (513)
                      .. -..+|..+...|.+.|+.++|
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHH
Confidence            11 145666677777777777666

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.49  E-value=6.5e-05  Score=69.05  Aligned_cols=173  Identities=10%  Similarity=-0.055  Sum_probs=129.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc-C-ChHH
Q 010292          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN-NVDLAADLFAEAANKHLKTIGTYNALLGAYMYN-G-LSDK  208 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-g-~~~~  208 (513)
                      ...+.|+++++.+...    .+-+..+|+.--.++...| .+++++++++.+...++++..+|+.-...+.+. + ++++
T Consensus        68 e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           68 EKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             CCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             CCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence            3455678888777765    2446677777777777777 599999999999988888888998888777776 7 8899


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC----
Q 010292          209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD--------HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM----  276 (513)
Q Consensus       209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----  276 (513)
                      ++++++.+.+.  -+-|-..|+.-.-.+.+.|.++        ++++.++++.+..+ -|...|+.....+.+.++    
T Consensus       144 EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          144 EIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence            99999999863  3556777877666665555565        88999999988765 488899988888888776    


Q ss_pred             ---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292          277 ---WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       277 ---~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~  312 (513)
                         ++++++.++++..... -|...|+-+-..+.+.|+.
T Consensus       221 ~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence               6788888888877432 2567777666666665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.49  E-value=8e-06  Score=67.03  Aligned_cols=130  Identities=8%  Similarity=-0.037  Sum_probs=99.2

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|...|++..+.  .+.+...+..+...+...|++++|...|++..+... .+...|..+..
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~   89 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            556778888888999999999999998865  244678888888889999999999999988887543 36778888888


Q ss_pred             HHHHccCHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 010292          270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY--LLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      ++.+.|++++|.+.|++..+..- .+...+  ..+...+...|++++|.+.++...
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            88899999999999988876431 134444  333444667788888888776654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.48  E-value=9.2e-06  Score=62.77  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=64.5

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|.+.|+++.+.  .+.+..++..+...+.+.|++++|...|+++.+... .+..++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~   85 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN   85 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence            456666777777777777777777777654  234556666677777777777777777777665432 35566666666


Q ss_pred             HHHHccCHHHHHHHHHHHHc
Q 010292          270 GYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .+.+.|++++|.+.|+++.+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHH
Confidence            66677777777777766655

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.47  E-value=2.4e-06  Score=72.98  Aligned_cols=95  Identities=4%  Similarity=-0.197  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc--ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCH
Q 010292          405 IMRCIVSSYFRCNAVDKLANFVKRAESA----GWR--LCRSLYHSKMVMYASQRRVEEMESVLKEMENY----KID-CSK  473 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~  473 (513)
                      ++..+...+...|++++|.+.+++..+.    +-.  .....+..+...+...|++++|...+++....    +-. .-.
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  147 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA  147 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence            3444455555555555555555544321    101  11223444445555555555555555544321    100 011


Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          474 KTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      .++..+...+...|++++|.+.+++.
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            22344555555555555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=2.7e-06  Score=75.56  Aligned_cols=189  Identities=6%  Similarity=-0.073  Sum_probs=117.8

Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHhcccCCHHHHHHHHHHHHhccCC------C-------
Q 010292          130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG-------IKFAGRINNVDLAADLFAEAANKHLK------T-------  189 (513)
Q Consensus       130 ~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~~~~------~-------  189 (513)
                      ..+++..|.+.|..+.+..    |-....|.-+       ...+.+.++..+++..+..-.+..+.      +       
T Consensus        18 ~~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence            3456777777777776652    3355666655       34455544455555444444331100      1       


Q ss_pred             --------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 010292          190 --------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-  260 (513)
Q Consensus       190 --------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-  260 (513)
                              ...+-.....+...|++++|.++|+.+...   .|+......+...+.+.+++++|+..|+...... .|. 
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~  169 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL  169 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence                    223344566677788888888888777642   3554455556667778888888888887554421 111 


Q ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292          261 -VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       261 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                       ...+..+-.++.+.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence             23566677778888888888888888775433243  3355666667778888888888888887753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.43  E-value=4.8e-06  Score=65.07  Aligned_cols=93  Identities=8%  Similarity=0.007  Sum_probs=53.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      ....|.+.|++++|++.|++.++.  .|.+..+|..+..+|...|++++|++.+++..+.... +...|..+..+|...|
T Consensus        19 ~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           19 KGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMR   95 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCC
Confidence            455556666666666666665553  2334455555666666666666666666665544322 3455555666666666


Q ss_pred             CHHHHHHHHHHHHhCC
Q 010292          453 RVEEMESVLKEMENYK  468 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~  468 (513)
                      ++++|.+.|++..+.+
T Consensus        96 ~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           96 EWSKAQRAYEDALQVD  111 (126)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHC
Confidence            6666666666665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.42  E-value=7e-06  Score=76.48  Aligned_cols=149  Identities=7%  Similarity=-0.035  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------HHHHHHHH
Q 010292          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----------------IVTYNTLI  233 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------------~~~~~~li  233 (513)
                      +++++|.+.|+...+..+.+...|..+...|.+.|++++|+..|++....   .|+                ...|..+.
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHH
Confidence            33444444443333222224555566666666666666666666665543   222                35666666


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      .++.+.|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+.. .-+...+..+..++.+.|+.+
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666665432 255666666666666666666666666665532 113555666666666666666


Q ss_pred             HH-HHHHHHHH
Q 010292          314 RM-EKIYELVK  323 (513)
Q Consensus       314 ~a-~~~~~~~~  323 (513)
                      ++ .++++.|.
T Consensus       282 ~a~~~~~~~~~  292 (336)
T 1p5q_A          282 AREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            65 33444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.41  E-value=2.7e-06  Score=77.13  Aligned_cols=193  Identities=6%  Similarity=-0.112  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY  306 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  306 (513)
                      ..+..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|.+.+++..+.. .-+...+..+..++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3444445555555555555555555544321 144555555555555555555555555555422 11345555555556


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010292          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM  386 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  386 (513)
                      ...|++++|...|+...+.... +...+...+....+..   ....... ......+. .+.... .+..+ ..|++++|
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~-~~~i~~-~l~~l-~~~~~~~A  154 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRWNS-IEERRIHQ-ESELHS-YLTRL-IAAERERE  154 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHHHH-HHHTCCCC-CCHHHH-HHHHH-HHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHHHH-HHHHHHhh-hHHHHH-HHHHH-HHHHHHHH
Confidence            6666666666666554442110 0000000111111110   1111111 11111111 111111 12222 25777777


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh
Q 010292          387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES  431 (513)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~  431 (513)
                      .+.+++..+  ..|.+......+...+.+. +.+++|.++|..+.+
T Consensus       155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            777766655  3344444444444444444 567778888876643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.41  E-value=4.4e-07  Score=84.67  Aligned_cols=131  Identities=8%  Similarity=-0.160  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      +...+..+...|.+.|++++|...|++..+....+               ...|..+..+|.+.|++++|+..|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34566666777777777777777777777665544               467777777777777777777777777764


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHH
Q 010292          220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV-EEIYQMMK  288 (513)
Q Consensus       220 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  288 (513)
                        .+.+...|..+..++...|++++|+..|++..+... -+...+..+..++.+.|+.++| ..+|+.|.
T Consensus       226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              234566777777777777777777777777776543 2566677777777777777766 34555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.41  E-value=2.3e-06  Score=69.18  Aligned_cols=93  Identities=9%  Similarity=-0.087  Sum_probs=67.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|+..|++.+..  .|.+...|..+..+|...|++++|...+++..+.... +...+..+..+|...
T Consensus        26 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           26 SLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence            3666777778888888888877764  3445666777777788888888888888877765432 456666777778888


Q ss_pred             CCHHHHHHHHHHHHhC
Q 010292          452 RRVEEMESVLKEMENY  467 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~  467 (513)
                      |++++|...|++..+.
T Consensus       103 g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          103 GELAEAESGLFLAQEL  118 (148)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8888888888777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.41  E-value=4.6e-06  Score=74.11  Aligned_cols=127  Identities=13%  Similarity=0.043  Sum_probs=95.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYA  449 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~  449 (513)
                      .+...+...|++++|.++|..+...+  |.+. ..-.+...+.+.+++++|+..|+...... .|.  ...+..+-.++.
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence            35677888899999999998776643  3334 45556668889999999999998554332 121  235677788899


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          450 SQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999885443253  346677888899999999999999998765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.40  E-value=1.3e-05  Score=62.41  Aligned_cols=120  Identities=5%  Similarity=-0.130  Sum_probs=80.1

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...|..+...+...|++++|++.|++....  .+.+...+..+...+...|++++|...+++..+... .+...|..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~   87 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHH
Confidence            4556777777777788888888888877754  234566777777777777777777777777776432 2466667777


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~  312 (513)
                      ..+.+.|++++|.+.|++..+.. ..+...+..+..++...|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            77777777777777777766532 12455566666666555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.40  E-value=4.4e-06  Score=67.48  Aligned_cols=95  Identities=8%  Similarity=-0.087  Sum_probs=49.5

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+.+.|++++|...|++.....+.+...|..+..+|...|++++|++.|++..+.  -+-+...|..+..++.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHH
Confidence            34444444555555555555555555554445555555555555555555555555555543  1223345555555555


Q ss_pred             hcCChhHHHHHHHHHHH
Q 010292          238 RLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~  254 (513)
                      +.|++++|...|++..+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.39  E-value=2e-06  Score=69.48  Aligned_cols=97  Identities=8%  Similarity=-0.089  Sum_probs=42.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...+..+...+...|++++|+..|++....  -+.+...|..+..++...|++++|+..|++...... -+...|..+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg   96 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence            3334444444444455555555555544432  122344444444444444444444444444443321 1233344444


Q ss_pred             HHHHHccCHHHHHHHHHHHH
Q 010292          269 AGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~  288 (513)
                      .+|...|++++|.+.|++..
T Consensus        97 ~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            44444444444444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.38  E-value=1.9e-06  Score=71.97  Aligned_cols=120  Identities=7%  Similarity=0.019  Sum_probs=60.3

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHH-HHhcCCH--H
Q 010292          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM-YASQRRV--E  455 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~  455 (513)
                      ..|++++|...+++.+...  |.+...+..+...|...|++++|...+++..+.... +...+..+... +...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence            3455555555555555432  233444555555555666666666666555443311 33444444444 4455555  6


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +|...+++..+.+ +-+...+..+...|...|++++|...|++..+.
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            6666665555543 234455555555566666666666666555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.38  E-value=2.1e-06  Score=77.80  Aligned_cols=94  Identities=6%  Similarity=-0.145  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      +...+..+...+.+.|++++|...|++....  .| +...|..+..++.+.|++++|.+.++...+.. +.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            4556666777777777777777777777663  23 56677777777777777777777777776642 23455555555


Q ss_pred             HHHHhcCChhHHHHHHHH
Q 010292          339 CAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~  356 (513)
                      .+|...|++++|...++.
T Consensus        80 ~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            556666655555554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.32  E-value=3.2e-05  Score=58.91  Aligned_cols=95  Identities=16%  Similarity=0.030  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+...|++++|.+.|+......+.+...|..+...+...|++++|...+++..+.  .+.+...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence            44445555555555555555555555544445555555555555555555555555555543  1223444555555555


Q ss_pred             hcCChhHHHHHHHHHHH
Q 010292          238 RLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~  254 (513)
                      ..|++++|...|++..+
T Consensus        84 ~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HTTCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            55555555555555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.32  E-value=9.1e-06  Score=61.44  Aligned_cols=98  Identities=13%  Similarity=-0.021  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLI  233 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li  233 (513)
                      ...+..+...+.+.|++++|...|++..+....+...|..+...+...|++++|++.|++..+.  .+.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence            3445555666666666666666666666655445666666666666666666666666666643  122  355666666


Q ss_pred             HHHHhc-CChhHHHHHHHHHHHC
Q 010292          234 SVFGRL-LLVDHMEAAFQEIKDS  255 (513)
Q Consensus       234 ~~~~~~-g~~~~A~~~~~~m~~~  255 (513)
                      .++.+. |++++|.+.|++..+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            666666 6666666666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.32  E-value=1.3e-06  Score=74.63  Aligned_cols=151  Identities=5%  Similarity=-0.085  Sum_probs=82.5

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------------HH
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------------IV  227 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------------~~  227 (513)
                      .+......|+++++.+.|+.-..........+..+...+...|++++|++.|++......-.|+              ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            3444455567777776666444332235667777788888888888888888888763111111              15


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHH
Q 010292          228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGY  306 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~  306 (513)
                      .|..+..++.+.|++++|+..+++..+... .+...|..+..+|...|++++|.+.|++..+.  .| +...+..+..++
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence            566666666666666666666666665432 24556666666666666666666666666552  22 344455555454


Q ss_pred             HhcCChHHH
Q 010292          307 AHSGNLPRM  315 (513)
Q Consensus       307 ~~~g~~~~a  315 (513)
                      ...++.+++
T Consensus       167 ~~~~~~~~~  175 (198)
T 2fbn_A          167 NKLKEARKK  175 (198)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            444444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.32  E-value=1.7e-05  Score=62.07  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=56.8

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...|..+...+...|++++|++.|++..+.  .+.+...+..+...+...|++++|...|++..+... .+...|..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la   91 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence            4555666666666666666666666666542  123455566666666666666666666666655432 2445555555


Q ss_pred             HHHHHccCHHHHHHHHHHHHc
Q 010292          269 AGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .++.+.|++++|.+.|++..+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            555566666666666655544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.31  E-value=0.0011  Score=60.47  Aligned_cols=164  Identities=7%  Similarity=-0.084  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 010292          174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL--L  241 (513)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~  241 (513)
                      +|+++++.+...++.+..+|+.--..+...+.          +++++.+++.+...  -+-+..+|+.-.-.+.+.|  +
T Consensus        48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCccc
Confidence            55555555555554444455443333322222          45555555555543  1334455555444444444  2


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-----------  309 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----------  309 (513)
                      +++++.+++++.+... .|..+|+.-...+.+.|. ++++++.++++.+..+. |...|+.....+.+.           
T Consensus       126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence            5556666666655443 255555555555555555 35556665555554322 444454444443333           


Q ss_pred             ---CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292          310 ---GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       310 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                         +.++++++.++..... .+.|...|+-+-..+.
T Consensus       204 ~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence               2355666666665554 2345555554333333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.31  E-value=1.8e-05  Score=61.63  Aligned_cols=96  Identities=8%  Similarity=-0.106  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+.+.|++++|.+.|++..+..+.+...|..+..+|.+.|++++|++.|++..+.  -+-+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            345555556666666666666666666655556666666666666666666666666666653  123455666666666


Q ss_pred             HhcCChhHHHHHHHHHHH
Q 010292          237 GRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~  254 (513)
                      ...|++++|...|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            666666666666666654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.27  E-value=2e-05  Score=67.03  Aligned_cols=132  Identities=12%  Similarity=-0.084  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----------------hHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----------------GTYNALLGAYMYNGLSDKCQSLFRDLKKEA  220 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  220 (513)
                      ..+..+...+.+.|++++|.+.|++..+....+.                ..|..+..+|.+.|++++|+..+++..+. 
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  117 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-  117 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence            3556677778889999999999998887544333                78888999999999999999999999875 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHcCC
Q 010292          221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGP  291 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g  291 (513)
                       .+.+...|..+..++...|++++|...|++..+... -+...+..+..++...++.+++. ..|..|...|
T Consensus       118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             245678899999999999999999999999887643 36777888888888877777766 5555555433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.27  E-value=4.1e-05  Score=59.54  Aligned_cols=97  Identities=8%  Similarity=0.046  Sum_probs=66.8

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+.+.|++++|++.|++..+.  .+.+...|..+..++.+.|++++|+..|++..+... -+...|..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            445666667777777777777777777754  234566777777777777777777777777776543 24666666777


Q ss_pred             HHHHccCHHHHHHHHHHHHc
Q 010292          270 GYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ++...|++++|.+.|++..+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           81 AQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHH
Confidence            77777777777777776655

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.26  E-value=6.3e-05  Score=59.31  Aligned_cols=99  Identities=12%  Similarity=-0.069  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      .+...+..+...+.+.|++++|...|+......+.+...|..+..++...|++++|+..|++..+.  .+.+...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence            466777777777788888888888888777766657777788888888888888888888877764  234566777777


Q ss_pred             HHHHhcCChhHHHHHHHHHHH
Q 010292          234 SVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      .++...|++++|...|++..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            777788888888877777764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.26  E-value=1.7e-05  Score=63.36  Aligned_cols=93  Identities=5%  Similarity=-0.126  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|...|++.+...  |.+...|..+..+|...|++++|...+++..+.... +...+..+..+|...
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence            36667778888888888888887743  445667778888888888888888888888766532 456677778888888


Q ss_pred             CCHHHHHHHHHHHHhC
Q 010292          452 RRVEEMESVLKEMENY  467 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~  467 (513)
                      |++++|...|+...+.
T Consensus       100 g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A          100 GDLDGAESGFYSARAL  115 (142)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            8888888888887764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.26  E-value=1.4e-05  Score=62.38  Aligned_cols=97  Identities=10%  Similarity=0.051  Sum_probs=53.6

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCC----HHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPS----IVTYNTL  232 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~----~~~~~~l  232 (513)
                      .+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|...|++...... ..++    ..+|..+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            4455555556666666666666666555444555666666666666666666666665554310 0111    4455555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 010292          233 ISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      ..++.+.|++++|...|++..+
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            5555555555555555555554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.25  E-value=1.5e-05  Score=60.12  Aligned_cols=98  Identities=9%  Similarity=-0.079  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 010292          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC--SKKTFWIMYY  481 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~  481 (513)
                      ..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.  +...|..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            3455566666677777777777776665442 245556666777777777777777777777654 33  4667777777


Q ss_pred             HHHhc-CCHhHHHHHHHHHHHCC
Q 010292          482 AYATC-GQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       482 ~~~~~-g~~~~A~~~~~~m~~~g  503 (513)
                      .+.+. |++++|.+.+++..+..
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcc
Confidence            77777 77777777777776553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.23  E-value=2.3e-05  Score=61.20  Aligned_cols=97  Identities=10%  Similarity=0.028  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYNTL  232 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~~l  232 (513)
                      ++..+...+.+.|++++|++.|++..+..+.+...|+.+..+|.+.|++++|++.|++..+.. ...++    ..+|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            344555556666666666666666665554456666666666666666666666666554320 00111    1234444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 010292          233 ISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      ..++...|++++|++.|++..+
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4555555555555555555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.22  E-value=2.3e-05  Score=62.59  Aligned_cols=94  Identities=11%  Similarity=-0.122  Sum_probs=52.9

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292          159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      +..+...+.+.|++++|...|+.....++.+...|..+..+|.+.|++++|+..|++....  -+-+...|..+..++..
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence            3344445555666666666666665555445556666666666666666666666665543  12334455555555666


Q ss_pred             cCChhHHHHHHHHHHH
Q 010292          239 LLLVDHMEAAFQEIKD  254 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~  254 (513)
                      .|++++|...|++..+
T Consensus        99 ~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           99 LGDLDGAESGFYSARA  114 (142)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666655554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.21  E-value=3.6e-05  Score=63.17  Aligned_cols=99  Identities=11%  Similarity=-0.037  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +...+..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..|++..+.  .+-+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            44556666666777777777777777777665556677777777777777777777777777654  1334566677777


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 010292          235 VFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      ++...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            777777777777777766653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.20  E-value=3.1e-05  Score=63.60  Aligned_cols=94  Identities=5%  Similarity=-0.095  Sum_probs=80.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|++.|++.++..  |.+...|..+..+|...|++++|+..+++..+.... +...|..+..+|...
T Consensus        16 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           16 SEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            57788889999999999999998853  456777888999999999999999999998876533 577888899999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 010292          452 RRVEEMESVLKEMENYK  468 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~  468 (513)
                      |++++|...|++..+..
T Consensus        93 g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           93 ADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC
Confidence            99999999999988754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00077  Score=64.94  Aligned_cols=188  Identities=9%  Similarity=-0.108  Sum_probs=95.7

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCC--C---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292          165 FAGRINNVDLAADLFAEAANKHLK--T---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~--~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      .+.+.|++++|.+.|..+.+....  +               ..++..+...|...|++++|.+.+..+....+..++..
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~   92 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK   92 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence            345556666666666666554321  1               11355566666666666666666666544211122221


Q ss_pred             ----HHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CC--CC
Q 010292          228 ----TYNTLISVFGRLLLVDHMEAAFQEIKD----SNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PV--MP  294 (513)
Q Consensus       228 ----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p  294 (513)
                          +.+.+-..+...|+.+.|..++++...    .+..+. ..++..+...|...|++++|..++++....  +.  .+
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  172 (434)
T 4b4t_Q           93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP  172 (434)
T ss_dssp             HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence                122222333344666666666655542    222222 345556666666667777766666665431  11  11


Q ss_pred             -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCC-C-c--HHHHHHHHHHHHhcCChhHHHH
Q 010292          295 -DTNTYLLLLRGYAHSGNLPRMEKIYELVKHH--VDG-K-E--FPLIRAMICAYSKCSVTDRIKK  352 (513)
Q Consensus       295 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~a~~  352 (513)
                       ...+|..++..|...|++++|..+++.....  ... | .  ...+..+...+...|+++.|..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence             1445666666666667777766666654431  111 1 1  2234444445555566655543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.17  E-value=4.8e-05  Score=59.36  Aligned_cols=105  Identities=8%  Similarity=-0.056  Sum_probs=69.5

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT  263 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~  263 (513)
                      ...+..+...+.+.|++++|++.|++..+.  .+-+...|+.+..+|.+.|++++|+..|++..+...  .++    ..+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            456677777888888888888888887764  234566777778888888888888888877765321  111    235


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                      |..+..++...|++++|++.|++...  ..||..+
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~  118 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL  118 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence            56666666777777777777776655  2345433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.17  E-value=0.00016  Score=54.89  Aligned_cols=98  Identities=9%  Similarity=-0.057  Sum_probs=68.2

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|...|++....  .+.+...+..+...+...|++++|...+++..+... .+...|..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~   80 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            455666777777778888888888777754  233566777777777777777777777777766532 25666677777


Q ss_pred             HHHHccCHHHHHHHHHHHHcC
Q 010292          270 GYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      ++...|++++|.+.|++..+.
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHHHHHc
Confidence            777777777777777776663

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.16  E-value=5.2e-05  Score=59.83  Aligned_cols=93  Identities=8%  Similarity=-0.101  Sum_probs=64.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|...|.+.+...  |.+...+..+...+...|++++|...++...+.... +...+..+...|...
T Consensus        14 ~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           14 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence            46667777777777777777776643  334556777777777777777777777777665432 455666777777777


Q ss_pred             CCHHHHHHHHHHHHhC
Q 010292          452 RRVEEMESVLKEMENY  467 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~  467 (513)
                      |++++|...|++..+.
T Consensus        91 ~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           91 ESYDEAIANLQRAYSL  106 (137)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            7777777777776653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=8.4e-05  Score=59.37  Aligned_cols=100  Identities=9%  Similarity=-0.067  Sum_probs=65.1

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      .+...+..+...+.+.|++++|.+.|++..+....+   ...|..+...|...|++++|++.|++..+.  .+.+...|.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~  103 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence            355666666667777777777777777766654433   566666667777777777777777776653  123455666


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      .+..++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            6666667777777777777666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.15  E-value=3e-05  Score=60.41  Aligned_cols=109  Identities=7%  Similarity=-0.037  Sum_probs=71.2

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT  263 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~  263 (513)
                      ...|..+...+...|++++|...|++....  .+.+...+..+...+...|++++|...+++..+...  .++    ..+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            456667777777788888888888877764  244566777777777777777777777777765321  112    556


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL  302 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  302 (513)
                      |..+...+.+.|++++|.+.|++..+.  .|+......+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l  118 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence            666666777777777777777776653  2444444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.14  E-value=0.00018  Score=69.38  Aligned_cols=197  Identities=11%  Similarity=-0.002  Sum_probs=105.2

Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcH
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMP-D---------------TNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEF  331 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~  331 (513)
                      ..+.+.|++++|++.|.++.+..-.. +               ...+..+...|...|++++|.+.+..+.+. +..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            45678899999999999987743221 1               124677888889999999998888876552 111222


Q ss_pred             H----HHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 010292          332 P----LIRAMICAYSKCSVTDRIKKIEALMRL----IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTS  399 (513)
Q Consensus       332 ~----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~  399 (513)
                      .    +.+.+-..+...|+.+.+.+.++....    ..........+..+...|...|++++|..++++....    +..
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence            1    122222223334555555544433322    1111111122234566666666666666666654432    222


Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      +....++..++..|...|++++|..+++.....    +..+.  ...+..+...+...|++++|...|.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            333445556666666666666666666654321    11111  2334444455555666666666655554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.10  E-value=3.9e-05  Score=59.30  Aligned_cols=92  Identities=11%  Similarity=-0.068  Sum_probs=54.2

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      .+...+.+.|++++|...|++..+..+.+...|..+..++...|++++|+..|++..+.  -+-+...+..+..++.+.|
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence            34445556666666666666666655555666666666666666666666666666543  1224455555666666666


Q ss_pred             ChhHHHHHHHHHHH
Q 010292          241 LVDHMEAAFQEIKD  254 (513)
Q Consensus       241 ~~~~A~~~~~~m~~  254 (513)
                      ++++|+..|++..+
T Consensus       100 ~~~~A~~~~~~al~  113 (121)
T 1hxi_A          100 NANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHH
Confidence            66666666666554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.09  E-value=0.0034  Score=57.32  Aligned_cols=185  Identities=10%  Similarity=-0.040  Sum_probs=128.0

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHHHH
Q 010292          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAYMY  202 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  202 (513)
                      ..+.|++.++.+...    .|-+..+|+.--.++...+.          +++++.+++.+...++++..+|+.-...+.+
T Consensus        45 ~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           45 LDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            445677777777653    23345555544333333332          6788899999988887888899888888888


Q ss_pred             cCC--hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----
Q 010292          203 NGL--SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA-----  274 (513)
Q Consensus       203 ~g~--~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----  274 (513)
                      .|+  +++++++++.+.+.  -+-|-..|+.-.-.+...|. ++++++.++++.+..+ -|..+|+.....+.+.     
T Consensus       121 l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          121 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-
T ss_pred             cCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccc
Confidence            774  78999999999875  35677888887777778887 5889999999988765 4888888887777665     


Q ss_pred             ---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhc
Q 010292          275 ---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-----------GNLPRMEKIYELVKHH  325 (513)
Q Consensus       275 ---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~  325 (513)
                               +.++++++.+++...... -|...|+-+-..+.+.           +.++++++.++++.+.
T Consensus       198 ~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          198 SGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence                     457788888888776431 2566666544444443           2345555556555553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.08  E-value=4.1e-05  Score=62.16  Aligned_cols=96  Identities=10%  Similarity=-0.026  Sum_probs=48.5

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IV  227 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~  227 (513)
                      ++..+...+...|++++|.+.+++..+....      ...++..+...+...|++++|.+.|++......-..+    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4455555666666666666666665443111      1235555666666666666666666655432100011    22


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292          228 TYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      .+..+...+...|++++|...+++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34444444555555555555554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.04  E-value=5.3e-05  Score=61.47  Aligned_cols=135  Identities=11%  Similarity=-0.063  Sum_probs=95.5

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS-PN----  260 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----  260 (513)
                      ..++..+...+...|++++|++.+++..+...-.++.    .++..+...+...|++++|...+++..+.... .+    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            4577888888999999999999998876531111221    46777888888999999999988887642100 11    


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ..++..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|.+.+++..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            456777778888888888888888876542    2111 145667777778888888888888877654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.03  E-value=9.4e-05  Score=57.10  Aligned_cols=95  Identities=4%  Similarity=-0.174  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      .+..+...+.+.|++++|+..|++..+.  -+-+...|..+..++...|++++|+..|++..+.... +...|..+..++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            4556667788889999999999988875  2446778888888888999999999999888876432 667888888888


Q ss_pred             HHccCHHHHHHHHHHHHc
Q 010292          272 MTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~  289 (513)
                      .+.|++++|...|++..+
T Consensus        96 ~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            888999999998888876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=0.00018  Score=57.38  Aligned_cols=97  Identities=7%  Similarity=-0.102  Sum_probs=68.6

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY  264 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  264 (513)
                      +...+..+...+...|++++|++.|++..+.   .|+    ...|..+..++...|++++|+..+++..+... .+...|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence            5667777777778888888888888877743   455    46667777777777777777777777766432 255666


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          265 NYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..+..++...|++++|.+.|++..+
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6677777777777777777777665

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.02  E-value=0.00029  Score=54.67  Aligned_cols=91  Identities=15%  Similarity=-0.008  Sum_probs=58.8

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLIS  234 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~  234 (513)
                      +...+.+.|++++|.+.|+...+..+.+.   ..+..+..++...|++++|+..|++..+.   .|+    ...+..+..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHH
Confidence            44555667777777777777666544333   46666667777777777777777776654   233    455666666


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 010292          235 VFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      ++.+.|++++|...|+++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            667777777777777766654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.00  E-value=0.00011  Score=71.55  Aligned_cols=123  Identities=6%  Similarity=-0.038  Sum_probs=66.8

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---------------IVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      ....|..+...|.+.|++++|+..|++..+..  +.+               ...|..+..++.+.|++++|+..|++..
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44555555555555555555555555555421  111               3555666666666666666666666665


Q ss_pred             HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010292          254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      +... .+...|..+..+|...|++++|...|++..+.  .| +...+..+..++.+.++.+++.
T Consensus       345 ~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          345 GLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5432 24555666666666666666666666666553  23 2345555555555555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.00  E-value=2.8e-05  Score=76.08  Aligned_cols=121  Identities=7%  Similarity=-0.116  Sum_probs=96.4

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      +...+.+.|++++|.+.|++..+..+.+...|..+..+|.+.|++++|++.|++..+.  -+-+...|..+..++.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            3445678899999999999999887768999999999999999999999999999874  24467889999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHccCHHHHHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAG--YMTAWMWGKVEEIYQ  285 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  285 (513)
                      +++|++.|++..+.... +...+..+..+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999875432 33455555555  888899999999998

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.96  E-value=2.4e-05  Score=76.65  Aligned_cols=121  Identities=11%  Similarity=-0.064  Sum_probs=93.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010292          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR  453 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  453 (513)
                      ...+.+.|++++|++.|++.++.  .|.+...|..+..+|.+.|++++|.+.+++..+... -+...|..+..+|.+.|+
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence            34466789999999999998885  455677889999999999999999999999987653 257788889999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHH
Q 010292          454 VEEMESVLKEMENYKIDCSKKTFWIMYYA--YATCGQRRKVNQVLGL  498 (513)
Q Consensus       454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~  498 (513)
                      +++|.+.|++..+.+ +-+...+..+..+  +.+.|++++|++++++
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999988764 3344556656555  8888999999999883

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.95  E-value=8.2e-05  Score=72.45  Aligned_cols=128  Identities=9%  Similarity=-0.010  Sum_probs=94.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-cc-cHhhH
Q 010292          375 RVYAKEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RL-CRSLY  441 (513)
Q Consensus       375 ~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~-~~~~~  441 (513)
                      ..+...|++++|+.++++.++.     | ..|....+++.|...|...|++++|..++++..+     .|. .| ...++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3456779999999988877652     1 2344567789999999999999999998887643     232 22 34568


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          442 HSKMVMYASQRRVEEMESVLKEMENY-----KI-DC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       442 ~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +.|...|...|++++|+.++++..+-     |- .| ...+.+.+-.++...|.+++|..+++++++.
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999998876541     31 12 2345566778888899999999999998763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.92  E-value=1.6e-05  Score=77.43  Aligned_cols=120  Identities=8%  Similarity=-0.144  Sum_probs=52.6

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI  222 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~  222 (513)
                      .|..+...|.+.|++++|...|++..+....+               ...|..+..+|.+.|++++|+..|++..+.  .
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~  347 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--D  347 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence            33444444444555555555555444433222               344444444455555555555555544432  1


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH
Q 010292          223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV  280 (513)
Q Consensus       223 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  280 (513)
                      +.+...|..+..+|...|++++|+..|++..+... -+...+..+..++.+.|+.+++
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            22344444444445555555555555554444321 1233444444444444444433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.91  E-value=0.00024  Score=55.15  Aligned_cols=92  Identities=13%  Similarity=0.023  Sum_probs=59.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHH
Q 010292          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I---VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNY  266 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~  266 (513)
                      ..+...+...|++++|.+.|++..+.   .|+ .   ..+..+..++.+.|++++|...|++..+.... +   ..++..
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~   81 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence            34555666777777777777777654   232 2   35666667777777777777777777654321 2   455666


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHc
Q 010292          267 LIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +..++.+.|++++|.+.|+++..
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666777777777777776665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.89  E-value=0.0014  Score=65.40  Aligned_cols=172  Identities=6%  Similarity=-0.103  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      ..++|++.++.+...++.+..+|+.--.++.+.|+          ++++++.++.+.+.  -+-+..+|+.-.-++.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence            34566777777777666666677666666665555          77777777777764  2345566766666666777


Q ss_pred             --ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------
Q 010292          241 --LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--------  309 (513)
Q Consensus       241 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------  309 (513)
                        +++++++.++++.+... -|..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              55777777777777654 36777777777777777 677777777777765433 566666666555552        


Q ss_pred             ------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292          310 ------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       310 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                            +.++++.+.++...... +.+...|.-+-..+.+.+..
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred             cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence                  45678888888877753 45777888777777776653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.86  E-value=0.00023  Score=67.06  Aligned_cols=121  Identities=6%  Similarity=-0.114  Sum_probs=76.8

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHh----------------ccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAAN----------------KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN  221 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~----------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g  221 (513)
                      .+..+...+.+.|++++|++.|++..+                ....+...|..+..+|.+.|++++|++.+++..+.  
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence            466677777888888888888887765                21124566666677777777777777777776642  


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010292          222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE  281 (513)
Q Consensus       222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  281 (513)
                      -+-+...|..+..++...|++++|+..|++..+... -+...+..+...+.+.++.+++.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            123455666666677777777777777776665432 14555555555555555555444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.83  E-value=4.5e-05  Score=58.47  Aligned_cols=89  Identities=8%  Similarity=-0.083  Sum_probs=69.8

Q ss_pred             hcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHH
Q 010292          379 KEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM  457 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A  457 (513)
                      ..|++++|+..|++.++.+. .|.+...+..+...|...|++++|...+++..+.... +...+..+..++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            46888999999999888531 3556677888999999999999999999998876643 467788888999999999999


Q ss_pred             HHHHHHHHhCC
Q 010292          458 ESVLKEMENYK  468 (513)
Q Consensus       458 ~~~~~~m~~~~  468 (513)
                      ...+++.....
T Consensus        81 ~~~~~~al~~~   91 (117)
T 3k9i_A           81 VELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999887653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.79  E-value=0.00041  Score=56.56  Aligned_cols=98  Identities=12%  Similarity=0.041  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhc------------------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANK------------------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK  217 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  217 (513)
                      ...+......+.+.|++++|++.|++....                  ...+...|..+..+|.+.|++++|+..+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666777778888888888888887664                  22234567777777777777777777777777


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292          218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      +.  -+.+...|..+..++...|++++|...|++..+.
T Consensus        91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            54  1345667777777777777777777777777664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.74  E-value=0.0005  Score=56.02  Aligned_cols=100  Identities=11%  Similarity=0.103  Sum_probs=55.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA------NI----------SPSIVTYNTLISVFGRLLLVDHMEAAFQEI  252 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------g~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (513)
                      ....+......+.+.|++++|+..|.+.....      .-          +-+...|..+..++.+.|++++|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            45677788888999999999999999887530      00          011234444444455555555555555554


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .+... .+...|..+..+|...|++++|...|++...
T Consensus        90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            44322 1344444444445555555555555444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.73  E-value=0.00046  Score=54.57  Aligned_cols=114  Identities=10%  Similarity=0.076  Sum_probs=90.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHH
Q 010292          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVE  455 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~  455 (513)
                      .+++++|.++|++..+.+...  .  .  +...|...+.+++|.++|++..+.|   +...+..|-..|..    .++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~--a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF--G--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT--H--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh--h--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence            356888999998888876332  2  2  6666777788888999999888776   45666777777877    88999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 010292          456 EMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~  505 (513)
                      +|..+|++..+.|   +...+..|...|..    .++.++|.++|++..+.|..
T Consensus        79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            9999999998876   45677788888888    88999999999998888753

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.70  E-value=8.5e-05  Score=56.89  Aligned_cols=85  Identities=12%  Similarity=0.017  Sum_probs=51.1

Q ss_pred             cCCHHHHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010292          169 INNVDLAADLFAEAANKH---LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM  245 (513)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A  245 (513)
                      .|++++|+..|++..+.+   +.+...|..+...|...|++++|++.|++..+.  .+-+...+..+..++.+.|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence            456666666666666653   225566666666666777777777777766654  133455666666666677777777


Q ss_pred             HHHHHHHHHC
Q 010292          246 EAAFQEIKDS  255 (513)
Q Consensus       246 ~~~~~~m~~~  255 (513)
                      +..|++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7766666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.69  E-value=0.0023  Score=63.76  Aligned_cols=174  Identities=11%  Similarity=-0.006  Sum_probs=138.6

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAY  200 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~  200 (513)
                      +...++|++.++.+...    .|-+..+|+.--.++.+.|+          ++++++.++.+.+..+++..+|+.-.-.+
T Consensus        42 ~~~~eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           42 GELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             TCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44566788888887765    34466777776666666666          99999999999999888999999999889


Q ss_pred             HHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 010292          201 MYNG--LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---  274 (513)
Q Consensus       201 ~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---  274 (513)
                      .+.|  +++++++.++++.+.  -+-|...|+.-..++.+.| .++++++.++++.+..+. |..+|+.....+.+.   
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred             HHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence            9999  679999999999986  2567889998888888888 899999999999987653 889999988887773   


Q ss_pred             -----------cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChH
Q 010292          275 -----------WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       275 -----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~  313 (513)
                                 +.++++++.+++.....  | |...|..+-..+.+.++.+
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence                       56788999998887633  4 5677777766676666643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.69  E-value=0.00021  Score=66.40  Aligned_cols=146  Identities=8%  Similarity=-0.068  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+.+.|++++|...|++.......+..        +...|+.+++...   +.        ...|+.+..++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~---l~--------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALA---VK--------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHH---HH--------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHH---HH--------HHHHHHHHHHH
Confidence            34556666777777777777777776654322210        0111111111111   10        02455566666


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH-HHhcCChHH
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRG-YAHSGNLPR  314 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~  314 (513)
                      .+.|++++|+..+++..+... -+...|..+..+|...|++++|...|++..+.  .|+ ...+..+... ....+..+.
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666655432 24556666666666666666666666665542  232 2233333332 122344555


Q ss_pred             HHHHHHHHHh
Q 010292          315 MEKIYELVKH  324 (513)
Q Consensus       315 a~~~~~~~~~  324 (513)
                      +.++|..|..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            5556655544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.68  E-value=0.00048  Score=64.85  Aligned_cols=120  Identities=8%  Similarity=-0.024  Sum_probs=88.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc--------------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEH--------------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR  438 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  438 (513)
                      +...+.+.|++++|++.|++.++.              ...+....+|..+..+|.+.|++++|++.+++..+... -+.
T Consensus       229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~  307 (370)
T 1ihg_A          229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNT  307 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhH
Confidence            444555556666666555555430              02234566788889999999999999999999987553 256


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010292          439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ  494 (513)
Q Consensus       439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  494 (513)
                      ..|..+..+|...|++++|...|++..+.. +-+...+..+...+...++.+++.+
T Consensus       308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          308 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888899999999999999999988765 4467777788888888887777654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.67  E-value=0.002  Score=51.56  Aligned_cols=94  Identities=9%  Similarity=-0.084  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------I-----VTYNTLISVFGRLLLVDHMEAAFQEIKDS---  255 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---  255 (513)
                      .+......+.+.|++++|++.|++..+-   .|+        .     ..|+.+..++.+.|++++|+..+++.++.   
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4445555566667777777777666643   233        1     25555555566666666666655555542   


Q ss_pred             --CCCCC-HHHH----HHHHHHHHHccCHHHHHHHHHHHH
Q 010292          256 --NLSPN-VFTY----NYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       256 --g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                        .+.|+ ...|    .....++...|++++|+..|++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence              01232 2344    555555555566666665555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.66  E-value=0.00077  Score=53.95  Aligned_cols=94  Identities=12%  Similarity=0.060  Sum_probs=55.8

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC
Q 010292          408 CIVSSYFRCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----KIDC  471 (513)
Q Consensus       408 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p  471 (513)
                      .....+...|++++|...|++..+.....           +...|..+..++.+.|++++|+..+++..+.     .+.|
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p   95 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence            34444445555555555555544322110           1225666666777777777777777776664     1123


Q ss_pred             -CHHHH----HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          472 -SKKTF----WIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       472 -~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                       +...|    .....++...|++++|+..|++..+
T Consensus        96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence             44566    6777777788888888887777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.64  E-value=5.5e-05  Score=57.06  Aligned_cols=90  Identities=9%  Similarity=-0.094  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------HHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-------IVT  228 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-------~~~  228 (513)
                      ...+..+...+.+.|++++|.+.|++..+..+.+...|..+..++.+.|++++|++.|++..+.   .|+       ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHHH
Confidence            4455566666666677777777777666655556666666666666777777777777666642   343       334


Q ss_pred             HHHHHHHHHhcCChhHHHHH
Q 010292          229 YNTLISVFGRLLLVDHMEAA  248 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~  248 (513)
                      +..+..++...|+.+.|...
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhH
Confidence            44444444444444444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.56  E-value=0.00038  Score=51.43  Aligned_cols=65  Identities=17%  Similarity=0.064  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      -+...+..+..+|.+.|++++|++.|++..+..+.+...|..+..+|...|++++|++.|++..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            36667777778888888888888888888777666777788888888888888888888877664

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.55  E-value=0.00036  Score=64.87  Aligned_cols=144  Identities=6%  Similarity=-0.037  Sum_probs=88.3

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ....|..+...+.+.|++++|+..|++....   .|+...       +...|+.+++...+   .       ...|..+.
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla  237 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIA  237 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHH
Confidence            3556778888889999999999999998864   455432       22233334433222   1       13788899


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-hcCCh
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS-KCSVT  347 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~  347 (513)
                      .+|.+.|++++|+..+++..+.. .-+...|..+..+|...|++++|.+.|+...+.. +.+...+..+..... ..+..
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988743 2368899999999999999999999999988753 224445555554423 23434


Q ss_pred             hHHHHHH
Q 010292          348 DRIKKIE  354 (513)
Q Consensus       348 ~~a~~~~  354 (513)
                      +.+...+
T Consensus       316 ~~a~~~~  322 (338)
T 2if4_A          316 QKQKEMY  322 (338)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            4444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.52  E-value=0.0014  Score=51.76  Aligned_cols=110  Identities=7%  Similarity=-0.164  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 010292          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHME  246 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~  246 (513)
                      ++++|.+.|++..+.|.+...    |...|...+.+++|++.|++..+.    -+...+..|-..|..    .++.++|.
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            445555555555554432222    444444444455555555555442    244444445555544    44555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCC
Q 010292          247 AAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  291 (513)
                      ..|++..+.|   +...+..|-..|..    .++.++|.++|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555554432   34444444444444    445555555555544433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.50  E-value=0.0012  Score=49.96  Aligned_cols=78  Identities=9%  Similarity=-0.091  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292          175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      |++.|++..+..+.+...|..+...|...|++++|+..|++..+.  .+.+...|..+..++...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555544445556666666666666666666666666543  123345555566666666666666666665543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.48  E-value=0.0013  Score=63.99  Aligned_cols=95  Identities=11%  Similarity=0.055  Sum_probs=69.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCCc-c-cH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGWR-L-CR  438 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~-~-~~  438 (513)
                      .|...|...|++++|+.++++.++-      ...|....+++.|...|...|++++|+.++++..+     .|.. | ..
T Consensus       356 nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  435 (490)
T 3n71_A          356 IASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK  435 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            4677777778888887777765541      23445566788999999999999999998887643     3322 2 34


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          439 SLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      .+.+.+-.++...+.+++|+.+|..+++
T Consensus       436 ~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          436 DLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777788888999999999998876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.45  E-value=0.0019  Score=46.21  Aligned_cols=79  Identities=13%  Similarity=0.053  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...+..+...+.+.|++++|.+.|++..+..+.+...|..+...+.+.|++++|++.|++..+.  .+-+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence            3445555555566666666666666665554445555666666666666666666666665543  12234444444444


Q ss_pred             H
Q 010292          236 F  236 (513)
Q Consensus       236 ~  236 (513)
                      +
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.41  E-value=0.0012  Score=50.06  Aligned_cols=79  Identities=11%  Similarity=-0.140  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010292          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL  216 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  216 (513)
                      |+..++...+.    .+.+...+..+...|.+.|++++|.+.|++..+..+.+...|..+..+|...|++++|...|++.
T Consensus         4 a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            4 ITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45566655543    34478889999999999999999999999999887778899999999999999999999999998


Q ss_pred             HHh
Q 010292          217 KKE  219 (513)
Q Consensus       217 ~~~  219 (513)
                      ...
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.32  E-value=0.0032  Score=44.94  Aligned_cols=82  Identities=9%  Similarity=-0.005  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292          403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA  482 (513)
Q Consensus       403 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  482 (513)
                      ...+..+...+...|++++|...+++..+... .+...+..+...+.+.|++++|...+++..+.+ +-+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            44566666777777888888887777765542 245566677777778888888888888777654 3355566666655


Q ss_pred             HHhc
Q 010292          483 YATC  486 (513)
Q Consensus       483 ~~~~  486 (513)
                      +.+.
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.0013  Score=49.17  Aligned_cols=61  Identities=11%  Similarity=0.018  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      .|..+...+...|++++|++.|++..+.  .+.+...|..+..++.+.|++++|+..|++..+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3444444444444444444444444432  122334444444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.26  E-value=0.00086  Score=53.55  Aligned_cols=94  Identities=12%  Similarity=0.048  Sum_probs=62.7

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS----------DKCQSLFRDLKKEANISP-SIVTYNTLISV  235 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~  235 (513)
                      .+.+.+++|.+.++...+..+.+...|+.+..++...+++          ++|+..|++..+.   .| +...|..+..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence            4556778888888888887777888888887777777664          4777777777754   34 45677777777


Q ss_pred             HHhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 010292          236 FGRLL-----------LVDHMEAAFQEIKDSNLSPNVFTYN  265 (513)
Q Consensus       236 ~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~  265 (513)
                      |...|           ++++|+..|++..+.  .|+...|.
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~  128 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL  128 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence            76654           566666666665553  34444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.16  E-value=0.017  Score=53.00  Aligned_cols=50  Identities=10%  Similarity=-0.040  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 010292          152 TPMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLKTIGTYNALLGAYM  201 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  201 (513)
                      .+.+...|...+++...     ..+..+|..+|++..+..+.....|..+..+|.
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~  244 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI  244 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34567777777766532     234578888888888877666666666555554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.09  E-value=0.0021  Score=51.30  Aligned_cols=99  Identities=13%  Similarity=0.006  Sum_probs=67.2

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292          201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV----------DHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      .+.+++++|++.++...+.  -+-+...|+.+..++...+++          ++|+..|++.++.... +..+|..+..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence            4556788888888888865  245677888788888777664          4788888877775432 56677777777


Q ss_pred             HHHcc-----------CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292          271 YMTAW-----------MWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       271 ~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      |...|           ++++|++.|++..+  +.|+...|...+.
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~  132 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            77664           67777777777666  4466555544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.08  E-value=0.003  Score=46.47  Aligned_cols=67  Identities=4%  Similarity=-0.007  Sum_probs=55.5

Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      |.+...+..+...|...|++++|...+++..+.... +...|..+..+|...|++++|.+.|++..+.
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            556677888999999999999999999998876533 5667888999999999999999999887653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.83  E-value=0.0061  Score=58.25  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=65.9

Q ss_pred             hcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-ccc-HhhHHHHH
Q 010292          379 KEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RLC-RSLYHSKM  445 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li  445 (513)
                      ..|++++|+.++++.++.     | ..|....+++.|..+|...|++++|+.++++..+     .|. .|+ ..+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999888876652     1 2234456788999999999999999999887643     231 233 45588888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 010292          446 VMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.81  E-value=0.052  Score=56.82  Aligned_cols=46  Identities=4%  Similarity=0.011  Sum_probs=22.3

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      ...|+++.|.++.+.+      .+...|..+...+.+.|+++.|++.|..+.
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3445555555543322      234455555555555555555555555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.73  E-value=0.0095  Score=56.97  Aligned_cols=94  Identities=6%  Similarity=-0.007  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cC-Ccc-cHh
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHK------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AG-WRL-CRS  439 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~~-~~~  439 (513)
                      .+..+...|++++|+.++++.++..      ..+....+++.+..+|...|++++|+.++++..+     .| ..| ...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3455667789999999998887632      2233466789999999999999999999997753     22 123 345


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          440 LYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      +++.|...|...|++++|+.++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            688899999999999999999987664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.70  E-value=0.076  Score=55.59  Aligned_cols=120  Identities=3%  Similarity=-0.032  Sum_probs=76.0

Q ss_pred             HHHHHcCChHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292          198 GAYMYNGLSDKCQS-LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       198 ~~~~~~g~~~~A~~-~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ......+++++|.+ ++..+       ++......++..+.+.|..+.|.++.++-.            .-.......|+
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~  667 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ  667 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred             hHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence            34456778888766 44221       112233677777888888888877653211            11234456788


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      +++|.++.+.+      .+...|..+...+.+.++++.|+++|..+.+         |..+...|...|+.+...
T Consensus       668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~  727 (814)
T 3mkq_A          668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV  727 (814)
T ss_dssp             HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence            88888876544      3567888888888888888888888887655         334555555566555433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.67  E-value=0.0078  Score=57.50  Aligned_cols=87  Identities=6%  Similarity=-0.018  Sum_probs=67.7

Q ss_pred             hcCcHHHHHHHHHHHHhc---CCc---c-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHH
Q 010292          415 RCNAVDKLANFVKRAESA---GWR---L-CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDC-SKKTFWIMY  480 (513)
Q Consensus       415 ~~~~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~li  480 (513)
                      ..|++++|+.++++..+.   -+.   | ...+++.|..+|...|++++|+.++++..+-     | -.| ...+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999876532   111   2 3467899999999999999999999887652     2 123 346788999


Q ss_pred             HHHHhcCCHhHHHHHHHHHHH
Q 010292          481 YAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ..|..+|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.52  E-value=0.013  Score=56.14  Aligned_cols=92  Identities=8%  Similarity=-0.117  Sum_probs=71.6

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhcC---Cc----ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHH
Q 010292          410 VSSYFRCNAVDKLANFVKRAESAG---WR----LCRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDC-SKKT  475 (513)
Q Consensus       410 i~~~~~~~~~~~a~~~~~~m~~~~---~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~  475 (513)
                      +..+...|++++|++++++..+..   +.    ....+++.+...|...|++++|+.++++...-     | -.| ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            455667899999999999886431   11    23566889999999999999999999877642     2 123 3467


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292          476 FWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       476 ~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ++.|...|..+|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88999999999999999999988653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.40  E-value=0.17  Score=38.52  Aligned_cols=121  Identities=12%  Similarity=0.157  Sum_probs=83.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C----------------CcccHhhHH
Q 010292          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-G----------------WRLCRSLYH  442 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----------------~~~~~~~~~  442 (513)
                      .|.+++..++..+.....    +..-||-+|--....-+-+-..++++.+-+. .                ...+...++
T Consensus        20 dG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd   95 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN   95 (172)
T ss_dssp             TTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred             hhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence            466677777777666532    2223555555444455555555555544210 0                012344567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292          443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  505 (513)
                      ..++.+..+|+-|+-.+++.++.. +.+|++...-.+..+|.+-|+..+|.+++.+.-+.|++
T Consensus        96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            778888999999999999999754 44788999999999999999999999999999999975

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.39  E-value=0.23  Score=45.61  Aligned_cols=141  Identities=11%  Similarity=0.020  Sum_probs=95.4

Q ss_pred             CCHhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--ChhHH---HHHHHHHH
Q 010292          188 KTIGTYNALLGAYMY--NG---LSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGR---LL--LVDHM---EAAFQEIK  253 (513)
Q Consensus       188 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~---~g--~~~~A---~~~~~~m~  253 (513)
                      .+...|...+++...  .+   ...+|+.+|++..+.   .|+ ...|..+.-++.-   .+  .-...   ...++...
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            388899998877543  33   358999999999975   566 3445443333321   11  11111   11222211


Q ss_pred             H-CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010292          254 D-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP  332 (513)
Q Consensus       254 ~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  332 (513)
                      . .....+..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.+++....  .|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence            1 1124578888888877777899999999999998854  78888888888889999999999999988875  35555


Q ss_pred             HHH
Q 010292          333 LIR  335 (513)
Q Consensus       333 ~~~  335 (513)
                      +|.
T Consensus       345 t~~  347 (372)
T 3ly7_A          345 TLY  347 (372)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.20  E-value=0.053  Score=39.14  Aligned_cols=58  Identities=16%  Similarity=0.047  Sum_probs=46.3

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      ....+.+.|++++|.+.|++..+..+.+.. .|..+..+|...|++++|++.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            345566778888888888888877666777 8888888888888888888888888765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.19  E-value=0.082  Score=37.94  Aligned_cols=67  Identities=7%  Similarity=-0.037  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          153 PMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      +.|...+..+..++...++   .++|..+|++..+..+.++.....+...+.+.|++++|+..|+.+.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3456666666666543333   577777777777776667777777777777777777777777777753

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.16  E-value=0.29  Score=37.23  Aligned_cols=60  Identities=10%  Similarity=0.143  Sum_probs=27.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  434 (513)
                      .+..+...|+-++..+++.++..  ..++++..+-.+..+|.+.|+..++.+++.++-+.|+
T Consensus        97 ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           97 ALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34444444555555444444322  2222233344455555555555555555555544443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.12  E-value=0.015  Score=42.24  Aligned_cols=59  Identities=10%  Similarity=0.082  Sum_probs=36.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~  433 (513)
                      ....+...|++++|.+.|++.++..  |.+.. .+..+..+|...|++++|.+.+++..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3445566677777777776666632  33444 56666666666677777777666665543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.55  Score=37.96  Aligned_cols=102  Identities=11%  Similarity=0.101  Sum_probs=56.2

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ....+.|+++.|.++.+.+     .+...|..|.......|+++-|.+.|.....          |..+.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence            3445566666666666554     2456666666666666776666666665541          223344444455555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      .-.++-+.....|-      +|....++.-.|+++++.++|.+
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            54444443333331      44444555556666666666644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.83  E-value=0.07  Score=38.33  Aligned_cols=68  Identities=7%  Similarity=-0.036  Sum_probs=46.8

Q ss_pred             CchHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010292          400 VTTVRIMRCIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      |.+...+..+..++...++   .++|..++++..+.... +......+...+.+.|++++|+..|+++.+.+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4455566666666654444   67888888887765533 45666666777778888888888888887765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.76  E-value=0.13  Score=45.37  Aligned_cols=110  Identities=6%  Similarity=-0.033  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc-CCHH
Q 010292          382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ-RRVE  455 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~  455 (513)
                      ....|...+++.++....-.+...|..+...|..     -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3566677777777744333355678888888888     489999999999988766433466677777888874 8899


Q ss_pred             HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          456 EMESVLKEMENYKID--CSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      +|.+.+++.......  |+....+.+-+        ++|..+++++
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~  295 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHh
Confidence            999999998887665  66544443332        4555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.64  E-value=0.088  Score=38.70  Aligned_cols=64  Identities=19%  Similarity=0.070  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      +...+-.+...+.+.|+++.|...|+...+.       +......+..|..++.+.|++++|+..+++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4555556666667777777777777665543       122455666666667777777777777766664

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.86  Score=36.83  Aligned_cols=45  Identities=18%  Similarity=0.123  Sum_probs=21.5

Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      +.|+++.|.++.+++      -+...|..|.......|+++-|+++|....
T Consensus        17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            344555555544443      134445555555555555555555554433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.34  E-value=0.11  Score=40.86  Aligned_cols=87  Identities=10%  Similarity=0.012  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHH
Q 010292          381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---AVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~  455 (513)
                      +.+..+.+.|.+....+.  .+..+...+..++++++   +.+++..+++...+.. .|  ....+-.+.-+|.+.|+++
T Consensus        12 ~~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~   88 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence            456677777877766544  34455556888899988   6779999999988765 23  3445555677889999999


Q ss_pred             HHHHHHHHHHhCCCCCC
Q 010292          456 EMESVLKEMENYKIDCS  472 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~  472 (513)
                      +|.+.++.+.+.  .|+
T Consensus        89 ~A~~y~~~lL~i--eP~  103 (152)
T 1pc2_A           89 KALKYVRGLLQT--EPQ  103 (152)
T ss_dssp             HHHHHHHHHHHH--CTT
T ss_pred             HHHHHHHHHHhc--CCC
Confidence            999999999885  454

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.23  E-value=0.14  Score=40.29  Aligned_cols=77  Identities=12%  Similarity=-0.091  Sum_probs=30.6

Q ss_pred             HHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292          176 ADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAAFQ  250 (513)
Q Consensus       176 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~  250 (513)
                      .+-|.+....+.++..+...+..++++++   +.++++.+|++..+. . .|  +...+-.|.-++.+.|+++.|.+.++
T Consensus        18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            33333333333334444444444444444   333444444444433 1 12  12222223333344444444444444


Q ss_pred             HHHH
Q 010292          251 EIKD  254 (513)
Q Consensus       251 ~m~~  254 (513)
                      .+.+
T Consensus        96 ~lL~   99 (152)
T 1pc2_A           96 GLLQ   99 (152)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.16  E-value=0.26  Score=43.46  Aligned_cols=94  Identities=15%  Similarity=0.085  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-C
Q 010292          171 NVDLAADLFAEAANKHLK--TIGTYNALLGAYMY-----NGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRL-L  240 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~-g  240 (513)
                      ....|..++++..+..+.  +...|..+...|.+     .|+.++|.+.|++..+.   .|  +..++......+++. |
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence            457788888888887765  67789999999999     49999999999999875   56  378888888888885 9


Q ss_pred             ChhHHHHHHHHHHHCCCC--CCHHHHHHH
Q 010292          241 LVDHMEAAFQEIKDSNLS--PNVFTYNYL  267 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~--p~~~~~~~l  267 (513)
                      +.++|.+.+++.......  |+....|.+
T Consensus       255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            999999999999987666  665544443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.16  E-value=0.17  Score=39.32  Aligned_cols=51  Identities=10%  Similarity=0.041  Sum_probs=21.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ++.++|.++|+.+.+..-+- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            44444444444443321111 3334444444444444444444444444433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.70  E-value=0.19  Score=36.88  Aligned_cols=24  Identities=13%  Similarity=0.081  Sum_probs=9.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHH
Q 010292          299 YLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      +..+..++.+.|+++.|...+++.
T Consensus        49 ~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A           49 LDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHH
Confidence            333333333333333333333333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.67  E-value=3  Score=39.82  Aligned_cols=54  Identities=15%  Similarity=0.091  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHhcc-----CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 010292          170 NNVDLAADLFAEAANKH-----LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS  223 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~  223 (513)
                      |+++.|++.+-.+.+..     .+ +......++..|...|+++...+.+..+.+..|..
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql   89 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL   89 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh
Confidence            67888888776665431     22 45667788888888899988888887776554443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.40  E-value=2.8  Score=43.71  Aligned_cols=155  Identities=10%  Similarity=0.048  Sum_probs=77.9

Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292          306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA--YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL  383 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  383 (513)
                      ++-.|+-+....++..+.+..   +..+...+.-+  +...|+.+.+..+.+.+.....+......-..+..+|+..|+.
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence            334566666666666655431   22333333333  3356777777777676665433222211111344566677777


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHH
Q 010292          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLK  462 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~  462 (513)
                      ....+++..+....  ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|+.++.
T Consensus       577 ~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          577 SAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            66666776666532  2233323333334444555555556655544433 34444444444444444443 56666777


Q ss_pred             HHHh
Q 010292          463 EMEN  466 (513)
Q Consensus       463 ~m~~  466 (513)
                      .+..
T Consensus       654 ~L~~  657 (963)
T 4ady_A          654 PLTK  657 (963)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            7653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.28  E-value=2.3  Score=44.33  Aligned_cols=260  Identities=8%  Similarity=-0.065  Sum_probs=136.9

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CC-----CCHHHHHHHHHHH
Q 010292          236 FGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VM-----PDTNTYLLLLRGY  306 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~-----p~~~t~~~ll~~~  306 (513)
                      ....|+.++++.+++.....+-..+  ...-..+.-+....|..+++..++.......  +.     +....-.++--++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4566777878777766554211122  2333444455666776667777776655421  10     1111122232233


Q ss_pred             HhcCC-hHHHHHHHHHHHhccCCCcHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292          307 AHSGN-LPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL  383 (513)
Q Consensus       307 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  383 (513)
                      +-.|. -+++.+.+..+..... .......  +|--.+...|+-+....++..+.+-...++. . ...+.-++...|+.
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vr-R-~aalgLGll~~g~~  540 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNIT-R-GLAVGLALINYGRQ  540 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHH-H-HHHHHHHHHTTTCG
T ss_pred             HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHH-H-HHHHHHHhhhCCCh
Confidence            33332 2345555555544321 1111122  2333345667766666666665543222111 1 12344445567888


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      +.+..+++.+............-.++.-+|+..|+.....+++..+.... ..++.....+.-++...|+.+.+.++++.
T Consensus       541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~  619 (963)
T 4ady_A          541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL  619 (963)
T ss_dssp             GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence            88888877776532211111112244557788889888888998887543 22344344444455556776667777776


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 010292          464 MENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMC  500 (513)
Q Consensus       464 m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~  500 (513)
                      +.+.+ .|..+--..+..+....|+. .+|.+++..+.
T Consensus       620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            66544 45555555566666666665 56777777765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.85  E-value=1.4  Score=33.26  Aligned_cols=94  Identities=11%  Similarity=0.008  Sum_probs=61.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcCCc-ccHhhHHHHHHHH
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK---LANFVKRAESAGWR-LCRSLYHSKMVMY  448 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~  448 (513)
                      ++........+..+.+-|.+....+. +. ..+--.+..++.++.+...   ++.+++.+.+.+.+ -.....-.|.-++
T Consensus         7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s-~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~   84 (126)
T 1nzn_A            7 VLNELVSVEDLLKFEKKFQSEKAAGS-VS-KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC-CC-HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHhccCC-Cc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            34444455566677777776666544 33 3333457778888876665   88888888765421 1333444566788


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 010292          449 ASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~  468 (513)
                      .+.|++++|.+.++.+.+..
T Consensus        85 yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           85 YRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhHHHHHHHHHHHHHhC
Confidence            89999999999999988753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.70  E-value=0.49  Score=44.41  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD-----SNLSPNVFTYN  265 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~  265 (513)
                      +...++..+...|++++|+..+..+...  .+-+...|..+|.++.+.|+..+|++.|+++.+     .|+.|...+-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            4556777788888888888888888764  355777888888888888888888888887653     48888876544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.56  E-value=2.4e-05  Score=73.19  Aligned_cols=264  Identities=11%  Similarity=0.085  Sum_probs=153.3

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      .+.+|..|.++..+.+++.+|++.|-+.     .|+..|..+|.+..+.|.+++-+..+.-.++.   .-+...=+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence            3446777888887777777765544221     26677888888888888888888877755543   233344457888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  314 (513)
                      +|++.+++.+-++++.       .||..-...+.+-|...|.++.|.-+|..+..         |.-|...+.+.|++..
T Consensus       125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~  188 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA  188 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred             HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence            8888888766443321       25665566677777788888877777765543         2233333445555554


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                      |.+.      .....+..||..+-.+|...+.+..|..+ +.+.   ...+-..    .++..|-..|.+++.+.+++..
T Consensus       189 AVda------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhadeL~----elv~~YE~~G~f~ELIsLlEag  255 (624)
T 3lvg_A          189 AVDG------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELE----ELINYYQDRGYFEELITMLEAA  255 (624)
T ss_dssp             STTT------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSCCS----GGGSSSSTTCCCTTSTTTHHHH
T ss_pred             HHHH------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHHHH----HHHHHHHhCCCHHHHHHHHHHH
Confidence            4322      11223555667777777777766655433 1111   1222222    2566677777777777777766


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCc------ccHhhHHHHHHHHHhcCCHHHHH
Q 010292          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWR------LCRSLYHSKMVMYASQRRVEEME  458 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~------~~~~~~~~li~~~~~~g~~~~A~  458 (513)
                      +.  .......+|+-|.-.|++- +.++.++.++..- +.+++      -....|.-++-.|++-.++|.|.
T Consensus       256 lg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          256 LG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             TT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            53  3444566777777667665 3333333333211 11111      12334666777777777777664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.43  E-value=2.4  Score=33.08  Aligned_cols=103  Identities=8%  Similarity=-0.011  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHhcccCCH------HHHHHHHHHHHhccCCC-HhHHHHHHHH------HHHcCChHHHHHHHHHHHHhCC
Q 010292          155 TKEEYTKGIKFAGRINNV------DLAADLFAEAANKHLKT-IGTYNALLGA------YMYNGLSDKCQSLFRDLKKEAN  221 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~-~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~~g  221 (513)
                      |..+|-..+...-+.|+.      ++.+++|++....-+|+ ...|..-|..      +...++.++|.++|+.+... +
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-C   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-C
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-h
Confidence            555666666666655666      66667777666543332 1111111111      12236777777777777653 2


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010292          222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP  259 (513)
Q Consensus       222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  259 (513)
                      -+- ...|......=.+.|++..|.+++......+.+|
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            121 5555555566667777777777777777666543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.26  E-value=2.8  Score=31.60  Aligned_cols=84  Identities=14%  Similarity=0.076  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc----cchHHHHHHHHHhcCCHHHHH
Q 010292          312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR----PWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~  387 (513)
                      +..+.+-+......|. ++..+-..+..++.+..+.....+.+.++.+....+..    ...| .+.-++.+.|++++|.
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY-~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF-YLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH-HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHhhhHHHHH
Confidence            3444555554444443 55666666777777777777766777777666554411    1113 3677788888888888


Q ss_pred             HHHHHHHhcC
Q 010292          388 KSINDAFEHK  397 (513)
Q Consensus       388 ~~~~~~~~~~  397 (513)
                      +.++.+++..
T Consensus        95 ~~~~~lL~~e  104 (126)
T 1nzn_A           95 KYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            8888887743

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.82  E-value=3  Score=45.38  Aligned_cols=80  Identities=10%  Similarity=0.018  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCC--CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVM--PD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      |..++..+-+.|.++.+.++-+...+..-.  ++  ...|..+.+++...|++++|...+-.+.....  -......|+.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence            566666666667666666665554432111  11  12456666777777777777666655554322  2333445555


Q ss_pred             HHHhcC
Q 010292          340 AYSKCS  345 (513)
Q Consensus       340 ~~~~~g  345 (513)
                      .+|..|
T Consensus       980 ~lce~~  985 (1139)
T 4fhn_B          980 QLTKQG  985 (1139)
T ss_dssp             HHHHHC
T ss_pred             HHHhCC
Confidence            555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.75  E-value=5  Score=43.66  Aligned_cols=130  Identities=8%  Similarity=0.051  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKT-SVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  446 (513)
                      |.-++..+.+.+.++.+.++-+..++... ..+  ....|..+..++...|++++|...+-.+.....+  ......||.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence            44567777788888888877766555322 121  1235778888888889999888888777654433  344566666


Q ss_pred             HHHhcCCHHH------------HHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHhHHHH-HHHHHHH
Q 010292          447 MYASQRRVEE------------MESVLKEMEN-Y-KIDCSKKTFWIMYYAYATCGQRRKVNQ-VLGLMCK  501 (513)
Q Consensus       447 ~~~~~g~~~~------------A~~~~~~m~~-~-~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~  501 (513)
                      .+|..|..+.            ..+++..-.+ . .+...+.-|..|-.-+...|++..|.. +|+...+
T Consensus       980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            6666655443            3334432211 1 111122346666666777888866554 4555544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.51  E-value=2  Score=43.73  Aligned_cols=125  Identities=6%  Similarity=-0.034  Sum_probs=74.2

Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhc------CCcc-cH-----
Q 010292          373 LIRVYAKEDC-LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA-VDKLANFVKRAESA------GWRL-CR-----  438 (513)
Q Consensus       373 li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~~-~~-----  438 (513)
                      ++..+...++ ++.|.++|+++....... ......+++..+...++ --+|.+++.+..+.      ...+ +.     
T Consensus       254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          254 LKSFIAITPSLVDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             HHHHHHTCGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHcccccHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            4555555555 577888888877753322 12222233333333332 22344444443211      1111 11     


Q ss_pred             -----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          439 -----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       439 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                           ...+.=.+.+...|+++-|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.|
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                 011111345567899999999999988753 456889999999999999999999888876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.83  E-value=0.92  Score=42.54  Aligned_cols=57  Identities=7%  Similarity=0.114  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM  464 (513)
Q Consensus       407 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  464 (513)
                      ..++..+...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444445555555555555444322 224445555555555555555555555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.21  E-value=3.8  Score=29.29  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ..++-..|...-+....|++.+..+.+++|-+.+++..|.++|+.++.+-.....+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            33444444444445567777777777777777777777777777766543223345555554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.10  E-value=2  Score=43.82  Aligned_cols=59  Identities=7%  Similarity=-0.064  Sum_probs=43.6

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHhHHHHHHHH
Q 010292          438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG---------QRRKVNQVLGL  498 (513)
Q Consensus       438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~  498 (513)
                      ..-|..|....-+.+++++|.+.|+.....  +-+...+.-|+..|...+         +.+..+.+.-+
T Consensus       613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ik  680 (754)
T 4gns_B          613 GLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIK  680 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHH
Confidence            334788877788888899999988888864  467788888888888776         55555554433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=88.59  E-value=21  Score=35.57  Aligned_cols=116  Identities=9%  Similarity=0.025  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010292          382 CLEEMEKSINDAFEHKTSVTTV--RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES  459 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  459 (513)
                      +.+.|...+..........+..  .....+.......+...++...+.......  .+.......+....+.|+++.|..
T Consensus       229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~  306 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT  306 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence            5677777776665433221111  112222223333342334444444433222  222233344444456677777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292          460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      .|+.|..... ....-.--+.+++...|+.++|..+|+++.
T Consensus       307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            7777765321 122223345556677777777777777654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.58  E-value=15  Score=34.06  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=53.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcccHhhHH---
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHKT----SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYH---  442 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~---  442 (513)
                      -++..|...|++.+|.+++.++.+.-.    ...-..+|..-+..|...+++.++...+......  .+.+++..-.   
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            467777777888887777776665211    1122344556667777778888777777765422  1212222211   


Q ss_pred             -HHHHHHH-hcCCHHHHHHHHHHH
Q 010292          443 -SKMVMYA-SQRRVEEMESVLKEM  464 (513)
Q Consensus       443 -~li~~~~-~~g~~~~A~~~~~~m  464 (513)
                       +-...+. ..+++..|...|-+.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHH
Confidence             1122334 677777777766554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.47  E-value=3.2  Score=29.65  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      .-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.... ....+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence            335666666666667777888888888888888888888888777665422 22334554443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.16  E-value=6.3  Score=29.91  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ..++-..|...-+....|++.+....+++|-+.+++..|..+|+-++.+-.+...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            33444444444455577777777777777777777777777777776543333445655554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.90  E-value=4  Score=32.41  Aligned_cols=115  Identities=5%  Similarity=-0.152  Sum_probs=62.4

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhcc--CCC-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKH--LKT-------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN  230 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~  230 (513)
                      .-++.+...|.++.|+-+.+.+....  .++       ..++..+..++...|++.+|...|++..+....-+.. .++.
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            34667778888888887777654321  112       2366777888999999999999999865432221211 1111


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      .+-    .......         ......+...---+-.||.+.|++++|+.+++.+.
T Consensus       105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            110    0000000         00111233333346677777888888888776653

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=83.16  E-value=7.2  Score=29.61  Aligned_cols=60  Identities=15%  Similarity=0.208  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292          279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      +..+-++.+....+.|+.......+++|-+.+|+..|.++|+-++..- .+...+|..+++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            455556666667778888888888888888888888888888776642 223344555443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=82.51  E-value=0.017  Score=54.45  Aligned_cols=180  Identities=9%  Similarity=0.079  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      |+..|..+|.+..+.|.+++-...+...++ ..++...=+.|+-+|++.++..+-.+++    .    .||..-...+.+
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~ke~~IDteLi~ayAk~~rL~elEefl----~----~~N~A~iq~VGD  152 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGD  152 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCCSTTTTHHHHHHHHTSCSSSTTTSTT----S----CCSSSCTHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HhcccccHHHHHHHHHhhCcHHHHHHHH----c----CCCcccHHHHHH
Confidence            556677788888888888777777664433 3445556677788888887765543322    1    256555566677


Q ss_pred             HHHhcCChhHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010292          235 VFGRLLLVDHMEAAFQEIKDSN--------------------LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP  294 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  294 (513)
                      -|...|.++.|.-+|..+....                    -.-++.||-.+-.+|...+++.-|.-.--.+.-.   |
T Consensus       153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a  229 (624)
T 3lvg_A          153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A  229 (624)
T ss_dssp             HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred             HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence            7777777777766665543211                    1236678888888888888877665544443321   1


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010292          295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI  350 (513)
Q Consensus       295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  350 (513)
                      |  -...++..|-..|.+++-+.+++.-... -......|+.|.-.|+|-. .++.
T Consensus       230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKl  281 (624)
T 3lvg_A          230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKM  281 (624)
T ss_dssp             S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHH
T ss_pred             H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHH
Confidence            1  1234556677888888888888876642 2347788999999999874 4433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.67  E-value=37  Score=32.25  Aligned_cols=95  Identities=9%  Similarity=0.069  Sum_probs=70.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCccc--HhhH
Q 010292          372 LLIRVYAKEDCLEEMEKSINDAFEHK-TSVT---TVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLC--RSLY  441 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~  441 (513)
                      .|...|...|++.+|.+++.++...- ...+   -...+...++.|...+++..|..+++++..    ....|+  ...|
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~  221 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY  221 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence            57888999999999999998876431 1111   245677788899999999999999998742    222232  3446


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          442 HSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       442 ~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ...+..+...+++.+|...|.+..+
T Consensus       222 ~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          222 NLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            7778888899999999988887754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.32  E-value=16  Score=27.79  Aligned_cols=60  Identities=2%  Similarity=-0.168  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          408 CIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       408 ~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      ....++.++.+   ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus        45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            35556666654   4467788887776653223455556667888888888888888888864

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=80.01  E-value=17  Score=28.91  Aligned_cols=26  Identities=12%  Similarity=0.157  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          474 KTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..---+..+|.+.|++++|+.+++.+
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            33345778889999999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.15
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.15
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.05
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.05
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.98
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.94
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.91
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.39
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.35
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.29
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.24
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.22
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.15
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.14
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.11
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.01
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.95
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.85
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.81
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.67
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.67
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.63
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.59
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.53
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.52
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.46
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.41
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.07
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.71
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.25
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.1
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.84
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.53
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.37
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.19
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.16
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.26
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.13

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-18  Score=162.28  Aligned_cols=357  Identities=10%  Similarity=-0.063  Sum_probs=280.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|.+.++.+.+.    .|-+...+..+..+|.+.|++++|.+.|++..+..+.+..+|..+..+|.+.|++++|+
T Consensus        12 ~G~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~   87 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence            46888999999888765    24478888999999999999999999999998887768899999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      +.+....+.  ...+...+..........+....+............ ................+....+...+......
T Consensus        88 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhcc
Confidence            999999875  345556666666666666777777666666655433 34455555666667777888888888777664


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010292          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      . .-+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++............+  
T Consensus       165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--  240 (388)
T d1w3ba_         165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH--  240 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH--
T ss_pred             C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH--
Confidence            3 2246778888888889999999999998887753 34667788888899999999988888776666555444433  


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  450 (513)
                      ..+...+...|++++|.+.|++.++.  .|.+..++..+...+...|++++|.+.++...... +.+...+..+...+.+
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHH
Confidence            24778888899999999999988874  45566778888899999999999999998887654 3466777888888999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus       318 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999988754 446778888999999999999999999988754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-16  Score=148.87  Aligned_cols=343  Identities=10%  Similarity=0.025  Sum_probs=282.9

Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010292          130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC  209 (513)
Q Consensus       130 ~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A  209 (513)
                      -.++++.|...++...+.    .|-+..+|..+..+|.+.|++++|.+.+....+....+...+..........+....+
T Consensus        45 ~~~~~~~A~~~~~~al~~----~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (388)
T d1w3ba_          45 QCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA  120 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred             HcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccc
Confidence            367999999999988775    2447889999999999999999999999999988776777777777777777888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..........  ..................+....+...+.+...... -+...+..+...+...|++++|...+++..+
T Consensus       121 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  197 (388)
T d1w3ba_         121 VQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             HHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cccccccccc--ccccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHH
Confidence            7777777654  345556666677777888889999988888876543 3677888888999999999999999999877


Q ss_pred             CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc
Q 010292          290 GPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW  368 (513)
Q Consensus       290 ~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  368 (513)
                      ..  | +...|..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...++...++.+.....+
T Consensus       198 ~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  274 (388)
T d1w3ba_         198 LD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             HC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             hC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            43  4 47788999999999999999999999988864 34667788889999999999999888887777766655554


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292          369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY  448 (513)
Q Consensus       369 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  448 (513)
                      .  .+...+...|++++|.+.++......  |.+...+..+...+...|++++|.+.+++..+.... +..++..+...|
T Consensus       275 ~--~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~  349 (388)
T d1w3ba_         275 C--NLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVL  349 (388)
T ss_dssp             H--HHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred             H--HHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            3  58889999999999999999988753  445667888999999999999999999998765422 467788899999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      .+.|++++|...|++..+.+ +-+...|..+..+|.+.||
T Consensus       350 ~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         350 QQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            99999999999999998765 3457789999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.5e-12  Score=116.85  Aligned_cols=273  Identities=10%  Similarity=-0.034  Sum_probs=178.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .....+.+.|++++|+..|+++.+.  -+-+..+|..+..++...|+++.|...|++..+... -+...|..+...|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence            4566788899999999999998864  234577888899999999999999999999887543 2677888888899999


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010292          275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE  354 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  354 (513)
                      |++++|.+.+++....  .|+...................                   ....+..+...+...++.+.+
T Consensus       101 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         101 SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGP-------------------SKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             TCHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHh--ccchHHHHHhhhhhhhhccccc-------------------chhhHHHHHHhhHHHHHHHHH
Confidence            9999999999888763  2321111000000000000000                   000011111222223333333


Q ss_pred             HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292          355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  434 (513)
                      ....+..+....+..+..+...+...|++++|+..|++.+...  |.+..+|..+...|...|++++|.+.+++..+...
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            3333333333333333356777888889999999988887743  44566788888889999999999999998876542


Q ss_pred             cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010292          435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENY----------KIDCSKKTFWIMYYAYATCGQRRKVNQ  494 (513)
Q Consensus       435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~A~~  494 (513)
                      . +...|..+..+|.+.|++++|+..|++..+.          ........|..+-.++...|+.+.+..
T Consensus       238 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         238 G-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             c-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            2 4667788888899999999999999887652          112233456677777777777765543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.1e-12  Score=116.39  Aligned_cols=229  Identities=10%  Similarity=-0.014  Sum_probs=150.4

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      ....+.+.|++++|.+.|++..+..+.+..+|..+..+|...|++++|+..|++..+.  .+-+...|..+...+...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccccccc
Confidence            4455678888999999998888877668888888888888889999999888888764  23356778888888888889


Q ss_pred             hhHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSP--------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGY  306 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~  306 (513)
                      +++|.+.+++........              +.......+..+...+.+.+|.+.|++..+.. -..+...+..+...+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            998888888877643110              00111112233344556667777777665421 223566677777777


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010292          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM  386 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  386 (513)
                      ...|++++|...++...+.. +.+...|..+...|.+.|++++|.+.++...++.+.....+.  .+..+|.+.|++++|
T Consensus       183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY--NLGISCINLGAHREA  259 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHH
T ss_pred             HHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH--HHHHHHHHCCCHHHH
Confidence            77777777777777766642 234556666666666666666666665555554444433332  356666666666666


Q ss_pred             HHHHHHHHh
Q 010292          387 EKSINDAFE  395 (513)
Q Consensus       387 ~~~~~~~~~  395 (513)
                      ++.|++.++
T Consensus       260 ~~~~~~al~  268 (323)
T d1fcha_         260 VEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.5e-09  Score=95.72  Aligned_cols=201  Identities=7%  Similarity=-0.061  Sum_probs=110.6

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      +|+.+-..+.+.+.+++|+++++++.+.++.+...|+....++...| ++++|++.++...+.  -+-+..+|+.+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence            33444444555566666666666666665556666666666665544 356666666666543  133455666666666


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----
Q 010292          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----  311 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----  311 (513)
                      .+.|++++|+..++++.+... -+..+|+.+...+.+.|++++|++.|+++.+.... +...|+.+...+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence            666666666666666665433 25566666666666666666666666666653211 35555555544444443     


Q ss_pred             -hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010292          312 -LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE  364 (513)
Q Consensus       312 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  364 (513)
                       +++|.+.+....+.. +.+...|+-+...+...| .+++.++++.+.++....
T Consensus       201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred             hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCc
Confidence             345666665555542 235555555544443333 344445554444444433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.3e-08  Score=93.36  Aligned_cols=164  Identities=11%  Similarity=-0.016  Sum_probs=102.4

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCC-----HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHLKT-----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNT  231 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~  231 (513)
                      .....+...|++++|.+++++..+..+.+     ...++.+...|...|++++|+..|++..+...-.++    ...+..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            34455667888888888888877654432     345667777788888888888888876542111122    234556


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCCCHHHHH
Q 010292          232 LISVFGRLLLVDHMEAAFQEIKD----SNLS--PN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMPDTNTYL  300 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~----~g~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~  300 (513)
                      +...+...|++..+...+.+...    .+..  +. ...+..+...+...|+++.+...++.....    +......++.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            66677777888888777766543    1111  11 234455566777778888888777776542    2223345556


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 010292          301 LLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      .+...+...++...+...+.....
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~  200 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLEN  200 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHH
Confidence            666667777777777776665443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=3.3e-08  Score=90.61  Aligned_cols=275  Identities=9%  Similarity=-0.057  Sum_probs=186.2

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC--
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN--  260 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--  260 (513)
                      ..........+...|++++|++++++....   .|+      ...++.+..++...|++++|...|++..+... .++  
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~---~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            344445566788899999999999998864   233      24677788899999999999999998875211 112  


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----C
Q 010292          261 --VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVM--PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHV----D  327 (513)
Q Consensus       261 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~  327 (513)
                        ..++..+...+...|++..+...+.+...    .+..  +. ...+..+...+...|+++.+...+.......    .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence              34566677788889999999999887653    2221  11 3455667788889999999999998876632    2


Q ss_pred             CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc-c----chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C
Q 010292          328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR-P----WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS--V  400 (513)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~  400 (513)
                      ......+..+...+...++...+...+............ .    .....+...+...|++++|...+.+.......  +
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  248 (366)
T d1hz4a_         169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH  248 (366)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence            223445556666777778777766655443333222111 1    11224556677788899998888776653322  2


Q ss_pred             chHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292          401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      .....+..+...+...|++++|...++....    .+..|+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus       249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2344556677788888999999888887642    344443 345677778888889999999888887753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.3e-08  Score=90.23  Aligned_cols=152  Identities=7%  Similarity=-0.090  Sum_probs=124.8

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ...|+.+...+.+.+..++|+++++++.+.  -+-+...|+....++...| ++++|+..++...+.... +..+|+.+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence            567778888888999999999999999975  2445568888888888876 589999999999876543 789999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV  346 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  346 (513)
                      ..+.+.|++++|++.++++.+.. .-+...|..+...+...|++++|++.++.+.+.. +.+...|+.+...+.+.+.
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccc
Confidence            99999999999999999998843 2258899999999999999999999999999874 3466677766555555444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=5.9e-08  Score=87.33  Aligned_cols=187  Identities=10%  Similarity=0.058  Sum_probs=94.5

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010292          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL  321 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  321 (513)
                      .+.|..+|++..+...+.+...|...+....+.|++++|..+|+++.+.........|...+..+.+.|+++.|.++|+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            34555555555543333344455555555555666666666666655432222233455555555555666666666655


Q ss_pred             HHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010292          322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT  401 (513)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (513)
                      +.+.+.. +...|....                                   ..-+...|+.+.|..+|+.++..  .|.
T Consensus       160 al~~~~~-~~~~~~~~a-----------------------------------~~e~~~~~~~~~a~~i~e~~l~~--~p~  201 (308)
T d2onda1         160 AREDART-RHHVYVTAA-----------------------------------LMEYYCSKDKSVAFKIFELGLKK--YGD  201 (308)
T ss_dssp             HHTSTTC-CTHHHHHHH-----------------------------------HHHHHTSCCHHHHHHHHHHHHHH--HTT
T ss_pred             HHHhCCC-cHHHHHHHH-----------------------------------HHHHHhccCHHHHHHHHHHHHHh--hhh
Confidence            5543211 111111110                                   00112234555555566555553  233


Q ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Cccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292          402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAG-WRLC--RSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       402 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      +...|...+..+...|+.+.|..+|++..+.. ..|.  ...|...+..-...|+.+.+.++++++.+
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44556666666666666666666666654432 2222  23455556555566666666666665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=8.8e-08  Score=86.13  Aligned_cols=149  Identities=11%  Similarity=0.064  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010292          206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ  285 (513)
Q Consensus       206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  285 (513)
                      .++|..+|++..+. ..+-+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|+.++|.++|+
T Consensus        80 ~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          80 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45666666666642 23334455666666666777777777777776654433334566677777777777777777777


Q ss_pred             HHHcCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292          286 MMKAGPVMPDTNTYLLLLRG-YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      .+.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|..+++..
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            76654322 22233322222 23346677777777766664 2334555555555555555555554444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=1.2e-08  Score=93.19  Aligned_cols=259  Identities=7%  Similarity=-0.084  Sum_probs=151.6

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHH----------HcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM----------YNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      ++....+....++|+++++...+..+.+...|+..-..+.          ..|++++|+.+++...+.  .+-+...|..
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~  112 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHH  112 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence            3333334444577777777777766556656654333322          234467788888877764  2345566666


Q ss_pred             HHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010292          232 LISVFGRLL--LVDHMEAAFQEIKDSNLSPNVFTYNYLI-AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH  308 (513)
Q Consensus       232 li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  308 (513)
                      +..++...+  ++++|...++++.+... ++...+...+ ..+...|.+++|+..+++..+... -+...|..+...+.+
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            666666655  36777778877776533 3455554433 555567778888888877776542 257777777777778


Q ss_pred             cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHH
Q 010292          309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK  388 (513)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  388 (513)
                      .|++++|...+....+..  |+   ...+...+...+..+.+...+.............+.  .+...+...++.++|..
T Consensus       191 ~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~--~l~~~~~~~~~~~~a~~  263 (334)
T d1dcea1         191 LHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCE--LSVEKSTVLQSELESCK  263 (334)
T ss_dssp             HSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCC--CCHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHH--HHHHHHHHHhhHHHHHH
Confidence            887776655444333220  00   111222333444444554444444444443333332  35556666677777777


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292          389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  433 (513)
                      .+.+...  ..|.+..++..+...+...|+.++|.+.++.+.+..
T Consensus       264 ~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         264 ELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             HHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            7776665  334455666667777777777777777777776543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.8e-08  Score=88.24  Aligned_cols=116  Identities=8%  Similarity=-0.103  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHhccCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010292          171 NVDLAADLFAEAANKHLK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      +.+.++.-+++.......    ...+|..+...|.+.|++++|++.|++..+.  -+-+..+|+.+..++.+.|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhh
Confidence            344455555555443221    2345555555666666666666666666543  1233455555555555666666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..|++..+.... +..+|..+..+|...|++++|.+.|+...+
T Consensus        92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_          92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            666555553321 334455555555555555555555555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=5e-08  Score=85.28  Aligned_cols=138  Identities=9%  Similarity=-0.093  Sum_probs=96.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010292          204 GLSDKCQSLFRDLKKEANISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE  281 (513)
Q Consensus       204 g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  281 (513)
                      .+.+.++.-+++........++  ..+|..+..+|.+.|++++|+..|++..+... -+..+|+.+..+|.+.|++++|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhh
Confidence            3456777777887754222221  23667777888888999999999988887643 36788888888888899999999


Q ss_pred             HHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010292          282 EIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS  345 (513)
Q Consensus       282 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  345 (513)
                      +.|++..+.  .| +..++..+..++...|++++|.+.|+...+... .+......+..++.+.+
T Consensus        92 ~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_          92 EAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhh
Confidence            998888873  34 366788888888888888888888888877532 33333333333334433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=6.3e-09  Score=95.16  Aligned_cols=275  Identities=8%  Similarity=-0.064  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH---H-------HhcCChhHHHHHHHHHHHCCCCCCH
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISV---F-------GRLLLVDHMEAAFQEIKDSNLSPNV  261 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~---~-------~~~g~~~~A~~~~~~m~~~g~~p~~  261 (513)
                      +..++...-..+..++|++++++..+.   .|+.. .|+..-..   .       ...|.+++|+.+++...+... -+.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~  107 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSY  107 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcH
Confidence            344444444444568999999999875   46654 45433322   2       233457889999999987654 377


Q ss_pred             HHHHHHHHHHHHcc--CHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292          262 FTYNYLIAGYMTAW--MWGKVEEIYQMMKAGPVMPDTNTYLL-LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       262 ~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      ..|..+..++...+  ++++|...++++.+.. .++...+.. ....+...+..++|...++.+.+.. +.+...|+.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~  185 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            88888887777766  4889999999988743 234555544 4466777899999999999988864 35788888888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292          339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      ..+.+.|++++|...+.....+     .+. .......+...+..+++...+........  +....+..+...+...|+
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~  257 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENV-----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGRA--EPLFRCELSVEKSTVLQS  257 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHH-----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSCC--CCSSSCCCCHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHh-----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHhh
Confidence            8999888877553322111110     011 11244455666777788888877776433  333345566777888899


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 010292          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS-KKTFWIMYYAYA  484 (513)
Q Consensus       419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~  484 (513)
                      .++|...+.+..+.... +...+..+...|.+.|++++|.+.+++..+.+  |+ ..-|..|...+.
T Consensus       258 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~  321 (334)
T d1dcea1         258 ELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence            99999999988765532 56778888899999999999999999999865  54 445555555444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=9.3e-06  Score=71.75  Aligned_cols=57  Identities=12%  Similarity=0.025  Sum_probs=39.8

Q ss_pred             HHHHHHccCHHHHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          268 IAGYMTAWMWGKVEEIYQMMKAG----PVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ...|...|++++|.+.|.+..+-    +-.++ ..+|..+..+|.+.|++++|.+.++...+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            45677788888888888776541    21122 45777888888888888888888776554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=8.4e-06  Score=72.03  Aligned_cols=167  Identities=9%  Similarity=-0.031  Sum_probs=107.4

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccC--C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHH
Q 010292          159 YTKGIKFAGRINNVDLAADLFAEAANKHL--K----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVT  228 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~  228 (513)
                      |......|...|++++|.+.|++..+...  .    -..+|+.+..+|.+.|++++|++.+++......-..+    ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            34455677888899999999888765321  1    2457888888888999999999888876542110112    344


Q ss_pred             HHHHHHHHH-hcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-----CCH-
Q 010292          229 YNTLISVFG-RLLLVDHMEAAFQEIKDS----NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-----PDT-  296 (513)
Q Consensus       229 ~~~li~~~~-~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~-  296 (513)
                      +..+...|- ..|+++.|++.+++..+.    +-.+ -..+|..+...+...|++++|.++|++.......     ... 
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            555666664 458888888888776531    1111 1345677778888888888888888887653211     111 


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ..+...+..+...|+++.|...++...+.
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            22334444566778888888888777664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1e-05  Score=66.40  Aligned_cols=126  Identities=10%  Similarity=-0.039  Sum_probs=78.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292          198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW  277 (513)
Q Consensus       198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  277 (513)
                      ..+...|++++|++.|+++.     .|+..+|..+..++...|++++|+..|++.++... -+...|..+..+|.+.|++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence            44556666666666665432     35556666666666666777777776666666543 2556666666666667777


Q ss_pred             HHHHHHHHHHHcC------------CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292          278 GKVEEIYQMMKAG------------PV--MPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       278 ~~a~~~~~~m~~~------------g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                      ++|++.|++....            |.  .++ ..++..+..++.+.|++++|.+.++...+....+
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            7776666665431            11  111 3455666777888888888888888777654433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-05  Score=64.06  Aligned_cols=93  Identities=9%  Similarity=-0.072  Sum_probs=65.7

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      ....|.+.|++++|+..|++..+.++.+...|..+..+|...|++++|+..|++..+.  -+-+..+|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcCC
Confidence            3445667777777777777777766667777777777777777777777777777754  23445677777777777777


Q ss_pred             hhHHHHHHHHHHHCC
Q 010292          242 VDHMEAAFQEIKDSN  256 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g  256 (513)
                      +++|...|++.....
T Consensus        94 ~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          94 FRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            777777777777643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.4e-05  Score=59.47  Aligned_cols=91  Identities=15%  Similarity=0.016  Sum_probs=57.6

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010292          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV  242 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~  242 (513)
                      ...+.+.|++++|+..|++..+..+.+...|..+..+|...|++++|+..++...+.  -+.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHccCH
Confidence            344556666666666666666665556666666666666666666666666666653  244555666666666666666


Q ss_pred             hHHHHHHHHHHHC
Q 010292          243 DHMEAAFQEIKDS  255 (513)
Q Consensus       243 ~~A~~~~~~m~~~  255 (513)
                      ++|+..|++..+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.8e-05  Score=64.91  Aligned_cols=125  Identities=13%  Similarity=-0.016  Sum_probs=80.9

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..+...|++++|++.|+++.   .++..+|..+..+|...|++++|++.|++..+.  -+-+...|..+..++.+.|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHH
Confidence            34456677777777776542   235666677777777777777777777777654  1344566777777777777777


Q ss_pred             HHHHHHHHHHHCC------------CC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010292          244 HMEAAFQEIKDSN------------LS--P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       244 ~A~~~~~~m~~~g------------~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                      +|...|++.....            ..  + ...++..+..++.+.|++++|.+.|+...+....
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            7777777665321            00  1 1245556677788888888888888887764433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9e-06  Score=60.60  Aligned_cols=93  Identities=10%  Similarity=-0.031  Sum_probs=76.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      -...+...|++++|+..|++.++.  .|.+...|..+..+|...|++++|+..+....+.... +...|..+..++...|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence            455677889999999999988874  4556777888888899999999999999988876643 6777888888899999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 010292          453 RVEEMESVLKEMENYK  468 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~  468 (513)
                      ++++|+..|++..+..
T Consensus        86 ~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999888754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=9.5e-06  Score=64.36  Aligned_cols=119  Identities=11%  Similarity=-0.038  Sum_probs=93.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      ....|.+.|++++|+..|.+.++.  .|.+...|..+..+|...|++++|.+.|+++.+.... +...|..+..+|...|
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            466778999999999999999985  4667788999999999999999999999999876633 5678899999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHH
Q 010292          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYA--YATCGQRRKVNQV  495 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~  495 (513)
                      ++++|...+++....+ +-+...+..+..+  ....+.+++|...
T Consensus        93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          93 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999998865 3345555554433  3344556666544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=0.001  Score=57.13  Aligned_cols=229  Identities=11%  Similarity=-0.049  Sum_probs=116.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      |+..+..|...+.+.+++++|++.|++..+.|   |...+-.|-..|..    ..+...|...++.....+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            34455566666666777777777777776654   44455555555554    446666666666665544   333333


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010292          301 LLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV  376 (513)
Q Consensus       301 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  376 (513)
                      .+...+..    ..+.+.|...++...+.|..   .....+...+..                                .
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~--------------------------------~  119 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHD--------------------------------G  119 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHH--------------------------------C
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccC--------------------------------C
Confidence            33333322    33455566666555544321   111111111111                                0


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh--
Q 010292          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS--  450 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--  450 (513)
                      .........+...+......+    +...+..+...+..    ..+...+..+++...+.|   +......+-..|..  
T Consensus       120 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~  192 (265)
T d1ouva_         120 KVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE  192 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred             CcccchhHHHHHHhhhhhccc----ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCc
Confidence            111223344444444433321    12223334444443    345555666666655544   22333333333433  


Q ss_pred             --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCC
Q 010292          451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  504 (513)
                        ..++++|+..|+...+.|   +...+..|...|.+    .++.++|.++|++..+.|.
T Consensus       193 ~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         193 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence              457778888888777776   34455556666654    3467778888877766664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=9.7e-06  Score=67.08  Aligned_cols=97  Identities=12%  Similarity=-0.044  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTL  232 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~l  232 (513)
                      |+...+......|.+.|++++|+..|++..+..+.+...|+.+..+|.+.|++++|+..|++..+   +.| +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHH
Confidence            44555555556666666666666666666655555666666666666666666666666666653   233 34455556


Q ss_pred             HHHHHhcCChhHHHHHHHHHH
Q 010292          233 ISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~  253 (513)
                      ..+|.+.|++++|+..|++..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            666666666666666665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2.1e-05  Score=64.99  Aligned_cols=98  Identities=7%  Similarity=-0.120  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHH
Q 010292          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLL  302 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l  302 (513)
                      |+...+......+.+.|++++|+..|++..+..+ -+...|+.+..+|.+.|++++|+..|++..+  +.| +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence            4444455555555666666666666655554432 2455555566666666666666666666554  233 25556666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 010292          303 LRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ..+|...|++++|...|+...+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            6666666666666666655443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.14  E-value=1.3e-05  Score=59.09  Aligned_cols=87  Identities=11%  Similarity=-0.033  Sum_probs=48.6

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..+.+.|++++|...|++.....+.+..+|..+..++.+.|++++|+..|++..+.  -+-+...|..+...|...|+++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCCHH
Confidence            34455566666666666655555445556666666666666666666666655543  1233455555555555555555


Q ss_pred             HHHHHHHHH
Q 010292          244 HMEAAFQEI  252 (513)
Q Consensus       244 ~A~~~~~~m  252 (513)
                      +|++.|++.
T Consensus       102 ~A~~~l~~~  110 (112)
T d1hxia_         102 AALASLRAW  110 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=0.0016  Score=57.45  Aligned_cols=281  Identities=10%  Similarity=0.017  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      |+..-...+...|.+.|.++.|..+|..+.        -|..++..+.+.++++.|.+++.+.       -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHH
Confidence            344444556666667777777777776442        4666667777777777776665432       1455676677


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      ..|.+......|     .+...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .+
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~  149 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ  149 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hH
Confidence            776666554433     1222223345555556677777777777777777665432 1345556666666666643 22


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                         ++.+.+......-+..   .++..|-+.+-+.                       -++..|.+.|.++.|..+.   
T Consensus       150 ---kl~e~l~~~s~~y~~~---k~~~~c~~~~l~~-----------------------elv~Ly~~~~~~~~A~~~~---  197 (336)
T d1b89a_         150 ---KMREHLELFWSRVNIP---KVLRAAEQAHLWA-----------------------ELVFLYDKYEEYDNAIITM---  197 (336)
T ss_dssp             ---HHHHHHHHHSTTSCHH---HHHHHHHTTTCHH-----------------------HHHHHHHHTTCHHHHHHHH---
T ss_pred             ---HHHHHHHhccccCCHH---HHHHHHHHcCChH-----------------------HHHHHHHhcCCHHHHHHHH---
Confidence               2333333221111221   1233333333222                       3555666667776666543   


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh-----------hHHHHHHHHHhcCCHHHHHHHHH
Q 010292          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS-----------LYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      +.......+   ...++..+.+..+.+...+++....+.  .|+..           --.-++..+-+.+++.....+++
T Consensus       198 i~~~~~~~~---~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le  272 (336)
T d1b89a_         198 MNHPTDAWK---EGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLR  272 (336)
T ss_dssp             HHSTTTTCC---HHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHH
T ss_pred             HHcchhhhh---HHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHH
Confidence            222211111   223455555666665555554443332  12110           01234455555666666666666


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010292          463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                      ...+.|   +....+++...|...++++.-.+..
T Consensus       273 ~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         273 SVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            666555   3467889999999999876544433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.06  E-value=1.9e-05  Score=58.18  Aligned_cols=88  Identities=7%  Similarity=-0.119  Sum_probs=49.3

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010292          410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR  489 (513)
Q Consensus       410 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  489 (513)
                      ...+.+.|++++|...+++..+.... +...|..+..++.+.|++++|+..|++..+.+ +-+...|..+...|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            33445555566666655555544322 34555555556666666666666666655544 33455555666666666666


Q ss_pred             hHHHHHHHHH
Q 010292          490 RKVNQVLGLM  499 (513)
Q Consensus       490 ~~A~~~~~~m  499 (513)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.2e-05  Score=58.73  Aligned_cols=40  Identities=5%  Similarity=-0.111  Sum_probs=16.5

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH
Q 010292          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY  202 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  202 (513)
                      ++.+...+++++|.+.|+.....++.+..++..+..++.+
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~   45 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR   45 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            3333344444444444444444433344444444444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.1e-05  Score=58.79  Aligned_cols=107  Identities=16%  Similarity=0.005  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL---VDHMEAAFQEIKDSNLSPN-VFTYNYLI  268 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li  268 (513)
                      ...++..+...+++++|.+.|++....  -+.+..++..+..++.+.++   +++|+.+|+++...+..|+ ..+|..+.
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            356778888899999999999999875  25677888888888887554   4569999999887654443 24677788


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL  303 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  303 (513)
                      .+|.+.|++++|.+.|++..+  +.|+..-...+.
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~  112 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence            999999999999999999988  457644443333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.85  E-value=0.0045  Score=52.82  Aligned_cols=228  Identities=9%  Similarity=-0.069  Sum_probs=133.8

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTY  264 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~  264 (513)
                      |+..+..|...+.+.+++++|++.|++..+. |   |...+..|-..|..    ..+...|...++.....+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            4567788888889999999999999999874 4   66777777777766    568899999999988765   44555


Q ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHH
Q 010292          265 NYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRA  336 (513)
Q Consensus       265 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      ..+...+..    .++.+.|...++.....|.   ......+...+..    ......+...+......   .+...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence            555554443    4577889999998887663   2233333333332    23344555555554443   23344444


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-
Q 010292          337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-  415 (513)
Q Consensus       337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-  415 (513)
                      |...|.....                                ...+...+...++...+.+.    ......+...|.. 
T Consensus       148 L~~~~~~~~~--------------------------------~~~~~~~~~~~~~~a~~~g~----~~A~~~lg~~y~~g  191 (265)
T d1ouva_         148 LGSLYDAGRG--------------------------------TPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHG  191 (265)
T ss_dssp             HHHHHHHTSS--------------------------------SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHT
T ss_pred             hhhhhccCCC--------------------------------cccccccchhhhhccccccc----cccccchhhhcccC
Confidence            4444433111                                11233334444444333321    1112223323332 


Q ss_pred             ---cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 010292          416 ---CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYK  468 (513)
Q Consensus       416 ---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~  468 (513)
                         ..++++|..+|....+.|.   ...+..|...|.+    .++.++|.+.|++..+.|
T Consensus       192 ~~~~~d~~~A~~~~~~aa~~g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         192 EGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cccccchhhhhhhHhhhhcccC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence               4567777777777766652   3344445555543    336777777777777666

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.0004  Score=55.22  Aligned_cols=113  Identities=7%  Similarity=-0.083  Sum_probs=77.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC-------------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010292          374 IRVYAKEDCLEEMEKSINDAFEHKTSV-------------TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL  440 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  440 (513)
                      ...+.+.|++++|+..|.+.+..-...             ....+|+.+..+|.+.|++++|+..++...+.... +...
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a   98 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKG   98 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhh
Confidence            344555666666666666555421110             01245667788889999999999999998876633 6778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292          441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      |..+..+|...|++++|+..|++..+.+ +-|......+-....+.+.
T Consensus        99 ~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          99 LSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999998865 3355555555555444333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00046  Score=54.86  Aligned_cols=61  Identities=5%  Similarity=-0.134  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      +|+.+..+|.+.|++++|++.++......  | +..+|..+..++...|++++|...|+...+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34445555555555555555555554422  2 3555555555555555555555555555543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.0004  Score=52.21  Aligned_cols=95  Identities=11%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHHHHH
Q 010292          160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNTLIS  234 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~li~  234 (513)
                      ..+...+.+.|++++|++.|++..+.++.+...|..+..+|.+.|++++|++.++++.+..--.++     ..+|..+..
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            345556677777777777777777766667777777777777777777777777776542000011     134555666


Q ss_pred             HHHhcCChhHHHHHHHHHHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~  254 (513)
                      .+...+++++|+..|++...
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            66666677777777666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.67  E-value=0.00098  Score=51.77  Aligned_cols=63  Identities=10%  Similarity=-0.129  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292          262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      .+|+.+..+|.+.|++++|++.+++..+.. +.+..+|..+..++...|++++|...|+...+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355556666666667777766666665532 124566666666677777777777776666664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=0.00044  Score=55.38  Aligned_cols=120  Identities=10%  Similarity=-0.026  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  452 (513)
                      ........|++++|.+.|.+.+.-...+.....         ..+.+  +...-..+..    .....+..+...+.+.|
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALVE----DKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence            445677889999999999888774221110000         00000  0000011110    01234556677777778


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----HCCCCCCC
Q 010292          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-----KNGYDVPV  508 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~  508 (513)
                      ++++|+..++.+...+ +-+...|..++.+|.+.|++++|++.|+++.     +.|+.|+.
T Consensus        82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            8888888877777765 5577777778888888888888877777763     35777754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.63  E-value=0.017  Score=50.62  Aligned_cols=283  Identities=8%  Similarity=-0.007  Sum_probs=158.5

Q ss_pred             cCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010292          117 HSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (513)
                      .|+..-...+...|  .+.++.|..+|..+            .-|..++..+.+.++++.|.+++...     .+..+|.
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~------------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k   73 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK   73 (336)
T ss_dssp             CC----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC------------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHH
Confidence            34444445555555  34677888888733            24778889999999999998887654     2678999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .+...+.+......|     .+... +...+......++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus        74 ~~~~~l~~~~e~~la-----~i~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          74 EVCFACVDGKEFRLA-----QMCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHTTCHHHH-----HHTTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcHHHHH-----HHHHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            999999988776544     22222 34456667778999999999999999999987643 246888899999999986


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHhcCC
Q 010292          275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV--------DGKEFPLIRAMICAYSKCSV  346 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~  346 (513)
                      + .++..+.++....   .-|   ...++..|-+.+-+.++.-++..+....        .++++.-...+++.+.+.++
T Consensus       147 ~-~~kl~e~l~~~s~---~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N  219 (336)
T d1b89a_         147 K-PQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN  219 (336)
T ss_dssp             C-HHHHHHHHHHHST---TSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS
T ss_pred             C-hHHHHHHHHhccc---cCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCC
Confidence            4 4444444443321   112   2334555555555555555554432210        11122112233444444444


Q ss_pred             hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010292          347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV  426 (513)
Q Consensus       347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  426 (513)
                      .+...++...+-+                    . +.+-...++..+...   .+    ...++..+.+.+++.....++
T Consensus       220 ~e~~~~~i~~yL~--------------------~-~p~~i~~lL~~v~~~---~d----~~r~V~~~~k~~~l~li~p~L  271 (336)
T d1b89a_         220 VELYYRAIQFYLE--------------------F-KPLLLNDLLMVLSPR---LD----HTRAVNYFSKVKQLPLVKPYL  271 (336)
T ss_dssp             THHHHHHHHHHHH--------------------H-CGGGHHHHHHHHGGG---CC----HHHHHHHHHHTTCTTTTHHHH
T ss_pred             hHHHHHHHHHHHH--------------------c-CHHHHHHHHHHhccC---CC----HHHHHHHHHhcCCcHHHHHHH
Confidence            4443333332221                    1 111111111111111   11    122444455556666666666


Q ss_pred             HHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010292          427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL  461 (513)
Q Consensus       427 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  461 (513)
                      +.....|   +....+++...|...++++.-....
T Consensus       272 e~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         272 RSVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            6655555   3467889999999999875544433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.0008  Score=50.43  Aligned_cols=95  Identities=8%  Similarity=-0.008  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-----HHHHHH
Q 010292          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS-PN-----VFTYNY  266 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-----~~~~~~  266 (513)
                      +..+...+.+.|++++|++.|++..+.  .+.+...|..+..+|.+.|++++|+..++++++.... +.     ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            445566677777777777777777764  2345667777777777777777777777776642110 01     134555


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHc
Q 010292          267 LIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +...+...+++++|++.|++...
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            55666666666666666665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=0.001  Score=53.09  Aligned_cols=120  Identities=9%  Similarity=-0.026  Sum_probs=69.8

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ......|++++|.+.|.+.......+..         ......+.+...-..+...     ....+..+...+.+.|+++
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l---------~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVL---------DDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTT---------GGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCccccc---------ccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCch
Confidence            4556778888888888877653211110         0001111111222222221     2345566777777777777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHH
Q 010292          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNT  298 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t  298 (513)
                      +|+..++++.+... -+...|..+|.+|.+.|+.++|++.|+++..     -|+.|+..+
T Consensus        85 ~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          85 AVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            77777777776543 3667777777777777777777777777533     477777654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.53  E-value=8.9e-05  Score=63.72  Aligned_cols=53  Identities=13%  Similarity=0.095  Sum_probs=41.0

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      .+.|++++|++.+++..+..+.+...+..+...++..|++++|.+.|+...+.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45677888888888877777667778888888888888888888888877754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.53  E-value=0.0019  Score=50.91  Aligned_cols=95  Identities=6%  Similarity=0.012  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY  483 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~  483 (513)
                      .+|+.+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|...|++....+ +.+......+-...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3466677888999999999999999887653 367788888899999999999999999998865 44555555555555


Q ss_pred             HhcCCH-hHHHHHHHHHH
Q 010292          484 ATCGQR-RKVNQVLGLMC  500 (513)
Q Consensus       484 ~~~g~~-~~A~~~~~~m~  500 (513)
                      .+.+.. +...+++..|.
T Consensus       143 ~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            444443 23445555553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.52  E-value=0.00063  Score=53.94  Aligned_cols=81  Identities=6%  Similarity=-0.072  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292          402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY  481 (513)
Q Consensus       402 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~  481 (513)
                      ....|..+..++.+.|++++|+..+....+... -+...|..+..+|.+.|++++|+..|+...+.+ +.+...+..+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            445567777788888888888888888876553 356778888888888888888888888888765 345555555554


Q ss_pred             HHH
Q 010292          482 AYA  484 (513)
Q Consensus       482 ~~~  484 (513)
                      +..
T Consensus       154 ~~~  156 (169)
T d1ihga1         154 VKQ  156 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.46  E-value=0.0016  Score=51.49  Aligned_cols=92  Identities=5%  Similarity=-0.104  Sum_probs=46.6

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccC---------------C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 010292          161 KGIKFAGRINNVDLAADLFAEAANKHL---------------K-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP  224 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~---------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p  224 (513)
                      .....+.+.|++++|++.|.+..+...               + ....|..+..++.+.|++++|+..+++..+.  -+-
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~  109 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPS  109 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhh
Confidence            344455677788888777766543100               1 2233444444455555555555555555432  123


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      +...|..+..++.+.|+++.|+..|++..+
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            344455555555555555555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.43  E-value=0.00016  Score=62.14  Aligned_cols=123  Identities=4%  Similarity=-0.069  Sum_probs=79.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010292          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  456 (513)
                      ..+.|++++|+..+++.++  ..|.+...+..+...++..|++++|.+.++...+.... +...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence            3467999999999999888  45667778889999999999999999999998865532 23333333333332322222


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292          457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       457 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +..-...-...+-+++...+......+...|+.++|.+++++..+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            2211111111111223334445567788899999999999988665

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.42  E-value=0.0035  Score=49.38  Aligned_cols=96  Identities=6%  Similarity=-0.135  Sum_probs=59.7

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccC---C------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 010292          158 EYTKGIKFAGRINNVDLAADLFAEAANKHL---K------------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI  222 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~  222 (513)
                      .+......+.+.|++++|...|+.....-.   .            ....|+.+..+|.+.|++++|+..++...+.  -
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~   94 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--D   94 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--c
Confidence            344556677888888888888877553210   0            1223445555666666666666666666653  2


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292          223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       223 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      +.+..+|..+..++...|++++|...|++..+.
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445566666666666666666666666666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.42  E-value=0.00042  Score=53.33  Aligned_cols=72  Identities=6%  Similarity=-0.069  Sum_probs=49.8

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN----------GLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      -+.+.+++|++.|+...+..+.+..+|..+..++...          +.+++|++.|++..+.  -+-+..+|..+..+|
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHHH
Confidence            4556688899999988888777888888888777654          3346677777777753  133456676666666


Q ss_pred             HhcC
Q 010292          237 GRLL  240 (513)
Q Consensus       237 ~~~g  240 (513)
                      ...|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            5543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.42  E-value=0.0049  Score=47.57  Aligned_cols=99  Identities=7%  Similarity=-0.078  Sum_probs=70.4

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---CC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS---PS-----------IVTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~---p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      ...+..-...+.+.|++++|+..|.+........   ++           ..+|+.+..+|.+.|++++|+..+++..+.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4456666777888888888888888877532111   11           235566777777888888888888887765


Q ss_pred             CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292          256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       256 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .. .+..+|..+..++...|++++|...|++..+
T Consensus        97 ~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          97 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            43 3677788888888888888888888888776

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.41  E-value=0.0006  Score=52.45  Aligned_cols=117  Identities=7%  Similarity=0.026  Sum_probs=81.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC----------NAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  446 (513)
                      |-+.+.+++|++.|+..++.  .|.+...+..+..+|...          +.+++|+..+++..+.... +..+|..+..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHH
Confidence            34556788888888888874  455666777777776643          4457788888888766533 5667777777


Q ss_pred             HHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292          447 MYASQR-----------RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       447 ~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      +|...|           .+++|.+.|++..+.  .|+...|..-+..+      ..|.+++.+..+.|+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            776544           368888999888875  46766666555444      456788888888775

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00015  Score=69.14  Aligned_cols=226  Identities=9%  Similarity=-0.080  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHccCHHHHHHHHH
Q 010292          208 KCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV-FTYNYLIAGYMTAWMWGKVEEIYQ  285 (513)
Q Consensus       208 ~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~  285 (513)
                      +|.+.|++..+.   +||. ..+..+..++...|++++|   |+++....  |+. ..++.  ....-...+..+.+.++
T Consensus         4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHH
Confidence            677888888753   5553 4566677777777777765   66666432  221 11211  11111122456777777


Q ss_pred             HHHcCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 010292          286 MMKAGPVMPDTNTYLLLLRGY--AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK  363 (513)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  363 (513)
                      ...+..-.++..-....+..+  ...+.++.++..+....+. .+++...+..+...+.+.|+.+.|...++....... 
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-  151 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-  151 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH-
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-
Confidence            776654334432222222222  2233444444444333322 123455566677777777776665544322211111 


Q ss_pred             CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHH
Q 010292          364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS  443 (513)
Q Consensus       364 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  443 (513)
                       .  .....+...+...|++++|...|++..+.  .|.+...|+.+...+...|+..+|...|.+..... .|...++..
T Consensus       152 -~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~n  225 (497)
T d1ya0a1         152 -Q--HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTN  225 (497)
T ss_dssp             -H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHH
T ss_pred             -H--HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence             0  11224777888889999999999988884  45566678889988999999999999998887655 456677777


Q ss_pred             HHHHHHhc
Q 010292          444 KMVMYASQ  451 (513)
Q Consensus       444 li~~~~~~  451 (513)
                      |...|.+.
T Consensus       226 L~~~~~~~  233 (497)
T d1ya0a1         226 LQKALSKA  233 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00034  Score=66.53  Aligned_cols=212  Identities=6%  Similarity=-0.119  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010292          136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD  215 (513)
Q Consensus       136 ~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  215 (513)
                      +|.+.|+...+...    -....+..+-.++...|++++|   |+++...++.....++..  ...-...+..+.+.++.
T Consensus         4 eA~q~~~qA~~l~p----~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVLKA----DMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE--QDLWNHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHHHG----GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH--HHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC----CCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH--HHHHHHHHHHHHHHHHH
Confidence            45566665554321    1223444455555566666654   555554422111222211  11111224556667766


Q ss_pred             HHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010292          216 LKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       216 m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                      ..+. .-.++..-....+..+  ...+.++.|+..++...+.. .++...+..+...+.+.|+.++|...++......  
T Consensus        75 ~~k~-~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          75 QAKN-RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHSC-SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred             hccc-ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            6643 2223322222221121  22334444444444333222 1345566777777778888888887776654411  


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010292          294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE  362 (513)
Q Consensus       294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  362 (513)
                       ...++..+...+...|++++|...|++..+. .+.+...|+.|...|...|+..+|...+..-.....
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence             1356677788888888888888888888776 344667788888888888887776655544443333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.07  E-value=0.0068  Score=46.91  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=30.2

Q ss_pred             HHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292          192 TYNAL--LGAYMYNGLSDKCQSLFRDLKKEANISPS----------IVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       192 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      +|..+  ...+...|++++|++.|++......-.|+          ...|+.+..+|.+.|++++|...+++..
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            44444  33445556666666666666542111121          2344445555555555555555444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.71  E-value=0.019  Score=44.17  Aligned_cols=98  Identities=10%  Similarity=-0.064  Sum_probs=66.1

Q ss_pred             HHHHHH--HHHHHhcCChhHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHcC---
Q 010292          227 VTYNTL--ISVFGRLLLVDHMEAAFQEIKDSNL-SPN----------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---  290 (513)
Q Consensus       227 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  290 (513)
                      .+|..+  ...+.+.|++++|+..|++.++... .|+          ..+|+.+..+|.+.|++++|.+.+++....   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            355555  4455677889999988888875211 111          356788888888888888888888776541   


Q ss_pred             --CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292          291 --PVMPD-----TNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       291 --g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                        ...++     ...|..+..+|...|++++|.+.|++..+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12222     22456677788888888888888877654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.023  Score=39.37  Aligned_cols=26  Identities=27%  Similarity=0.132  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292          192 TYNALLGAYMYNGLSDKCQSLFRDLK  217 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~  217 (513)
                      +++.|..++.+.|++++|++.++++.
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            34444444444444444444444444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.023  Score=39.30  Aligned_cols=78  Identities=6%  Similarity=-0.118  Sum_probs=58.6

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010292          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA----NISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT  263 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  263 (513)
                      +...+-.+...+.+.|++++|+..|++..+..    ...++ ..+++.|..++.+.|++++|+..+++..+..+. +..+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence            34455677888899999999999998876531    11222 468999999999999999999999999986532 4555


Q ss_pred             HHHH
Q 010292          264 YNYL  267 (513)
Q Consensus       264 ~~~l  267 (513)
                      ++.+
T Consensus        83 ~~Nl   86 (95)
T d1tjca_          83 NGNL   86 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.25  E-value=0.11  Score=37.01  Aligned_cols=123  Identities=12%  Similarity=0.157  Sum_probs=88.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CC----------------cccHhh
Q 010292          378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-GW----------------RLCRSL  440 (513)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~----------------~~~~~~  440 (513)
                      .-.|.+++..+++.+.....    +..-||-+|--....-+-+-..+.++.+-+. .+                .-+...
T Consensus        13 ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~   88 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH   88 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             HHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence            34577777788877776632    2233666665555566666666666654221 01                123344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292          441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  505 (513)
                      ++..++.+..+|+-+.-.++++++.+.+ ++++...-.+..+|.+-|...++-+++.+.-+.|++
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            6677888899999999999999987755 888999999999999999999999999999999975

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.10  E-value=0.12  Score=38.07  Aligned_cols=112  Identities=11%  Similarity=0.084  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHH
Q 010292          382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEM  457 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A  457 (513)
                      ++++|.++|++..+.+....    ...|.  .....+.++|.+++++..+.|.   ......|-..|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g~~~a----~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFG----CLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTH----HHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCChhh----hhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHHH
Confidence            67788888888777654321    22222  2345678889999888877773   3344445455543    5678999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 010292          458 ESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~  505 (513)
                      .++|++..+.|   +......|...|..    ..+.++|.++|++..+.|..
T Consensus        79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            99999998887   33445556566655    56889999999998888753

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.84  E-value=0.41  Score=34.03  Aligned_cols=140  Identities=8%  Similarity=-0.037  Sum_probs=87.3

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010292          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      .-.|.+++..++..+....  .+..-||.+|--....-+-+...++++.+-+-+.+              ..++++....
T Consensus        13 ildG~ve~Gveii~k~~~s--s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS--STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHccc--CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHHH
Confidence            3456777777777776653  25556666666666666666666666665432211              1233333333


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      .-+-.+-     .+...++..++.+.+.|+-++-.++++.+.+.+ +++......+..+|.+.|+..++.+++.+.-+.|
T Consensus        77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            3332221     234455666777778888888888888866643 6677777788888888888888888888777766


Q ss_pred             CC
Q 010292          327 DG  328 (513)
Q Consensus       327 ~~  328 (513)
                      ..
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            53

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.53  E-value=0.91  Score=32.98  Aligned_cols=16  Identities=13%  Similarity=0.297  Sum_probs=8.5

Q ss_pred             CHHHHHHHHHHHHhcc
Q 010292          171 NVDLAADLFAEAANKH  186 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~  186 (513)
                      ++++|+++|++..+.|
T Consensus         8 d~~~A~~~~~kaa~~g   23 (133)
T d1klxa_           8 DLKKAIQYYVKACELN   23 (133)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            4555555555555443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.37  E-value=1.7  Score=29.17  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=37.4

Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292          138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      .++-..|...-+....|++.+..+.+++|-+.+++..|.++|+.++.+.-.+...|..+++
T Consensus        23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq   83 (105)
T d1v54e_          23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3444444444445567777777777777777777777777777766543233445555543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.19  E-value=2  Score=30.48  Aligned_cols=60  Identities=3%  Similarity=-0.133  Sum_probs=37.3

Q ss_pred             HHHHHHhc---CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010292          409 IVSSYFRC---NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       409 li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      ...++.++   .+.++++.+++++.+.+..-....+-.|..+|.+.|++++|.+.++.+.+..
T Consensus        41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          41 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            44555544   3455677777777654421112444556667778888888888888877643

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=7.3  Score=34.85  Aligned_cols=122  Identities=6%  Similarity=-0.185  Sum_probs=78.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh------------cCCcccH--
Q 010292          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES------------AGWRLCR--  438 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------------~~~~~~~--  438 (513)
                      .+......+++..+...+..+-......  ..-.--+..++...|+.+.|..+|.....            .|.+++.  
T Consensus       291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~--~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~  368 (450)
T d1qsaa1         291 RVRMALGTGDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKI  368 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTGGGS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHcCChHHHHHHHHhcCcccccH--HHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCc
Confidence            3344455677888877777664322221  22223456777778888888887776532            1211100  


Q ss_pred             --------hh-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292          439 --------SL-----YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       439 --------~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                              ..     -..-+..+...|+..+|...|..+.+.   .+......+.....+.|.++.|+....+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence                    00     112355677899999999999988753   25567778888899999999998776654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.26  E-value=2.9  Score=29.60  Aligned_cols=20  Identities=5%  Similarity=-0.159  Sum_probs=8.1

Q ss_pred             HHHhcCChhHHHHHHHHHHH
Q 010292          235 VFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~  254 (513)
                      +|.+.|+++.|.+.++.+.+
T Consensus        82 ~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          82 GCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHc
Confidence            33344444444444444333

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.13  E-value=3.8  Score=27.37  Aligned_cols=61  Identities=13%  Similarity=0.141  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      .-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.... .+...|..++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yil   82 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            345666666666677778888888888888888888888888877765422 2233454443