Citrus Sinensis ID: 010325

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQGGQSKQGLPPKKAAESDSSSTRATPSDPPLDSK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEHHccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHccccHHHHccccccEEEEEcccHccHHHHHHHHHccccEEEEEccccccEEEEEEHHHHHEcccccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccHHHHHcccccccccccccHHHHccccEEEEEccHHHHHHHHHHHHcccccccccHHEEEEEccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQLLNAVMATRMLTstmkngggpssegipfgsVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILqrsgtpsekkqaaaIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSqeagkggelthdeTTIISGaldltektaeeamtpiestfsldvnsklDWEAMGKILArghsrvpvysgnpknIIGLLLVKSLltvrpetetpvsavsirriprvpsdmplyDILNEFQKGSSHMAAVVKAkgksktlppmtdgkkpklneakggdcdltapllskqdektesvvvdvdrplssgsmnrlsssqrsdsttngliyasediedgeviGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSvarapssrrligqkgaavsgypnqggqskqglppkkaaesdssstratpsdppldsk
Flexible Loop (DISEMBL)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSqeagkggelthdETTIISGALDLTEKTAEEAMTpiestfsldvnsKLDWEAMGKILarghsrvpvysgNPKNIIGLLLVKSLLtvrpetetpvsavsirriprvpsdMPLYDILNEFQKGSSHMAAVVKakgksktlppmtdgkkpklneakggdCDLTapllskqdektesvvvdvdrplssgsmnrlsssqrsdsttnGLIYasediedgeVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAaassvarapssrrliGQKGAavsgypnqggqskqglppkkaaesdssstratpsdppldsk
Low Complexity Region (SEG)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAgimsgltlglmslglveleILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPlssgsmnrlsssqrsdsttngLIYASediedgevigiiTLEDVFEELLQEEIVDETDEYVDVHKRIrvaaaaaassvarapssrrLIGQKGAAVSGYPNQGGQSKQGLPPKKAAESDSSSTRATPSDPPLDSK
Disordered region (IsUnstruct)
***************************IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQR*********AAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQE******LTHDETTIISGALDLT**********IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEF***********************************************************************************GLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAA*************************************************************
Disordered Region (DISOPRED)
********A********************FGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELE**************AAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNE***************************DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAP************VVDVDRPLSSG************STTNGLIYASEDIE*G*VIGIITLEDVFEELLQ************************************************************************************
Disordered Region (DISEMBL)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQR*********AAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSS****************NGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVA*****************IGQKGAAVSG*************************************
Disordered Region (DISPRO)
*QLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGG*****APLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAA**************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQGGQSKQGLPPKKAAESDSSSTRATPSDPPLDSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
Q67XQ0	494	DUF21 domain-containing p	yes	no	0.914	0.949	0.776	0.0
Q4V3C7	495	DUF21 domain-containing p	no	no	0.904	0.937	0.738	0.0
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.881	0.905	0.691	1e-178
Q8VZI2	424	DUF21 domain-containing p	no	no	0.771	0.933	0.535	1e-118
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.789	0.957	0.526	1e-117
Q8RY60	527	DUF21 domain-containing p	no	no	0.941	0.916	0.463	1e-115
Q9LTD8	500	DUF21 domain-containing p	no	no	0.789	0.81	0.490	1e-115
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.576	0.419	0.417	4e-61
Q9USJ3	679	Uncharacterized protein C	yes	no	0.567	0.428	0.397	1e-56
A0JPA0	769	Metal transporter CNNM4 O	yes	no	0.594	0.396	0.393	6e-56

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/487 (77%), Positives = 413/487 (84%), Gaps = 18/487 (3%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M L+NAV A R+L+   ++ G    E IPFGS  W  YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGTP+EKKQAAAIFPVVQKQHQLLVTLLLCNA +ME LPIYLDKLFN+
Sbjct: 61  SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct: 121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHN+ALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct: 181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVRPETET VSAV IRR
Sbjct: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVP+DMPLYDILNEFQKGSSHMAAVVK K     +PP T  ++   +  +  D DLTA
Sbjct: 301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVK-GKSKVPPSTLLEE---HTDESNDSDLTA 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL K++   ++V+V +D+       N  S  Q ++S  +G  + SE IEDGEVIGIITL
Sbjct: 357 PLLLKREGNHDNVIVTIDKA------NGQSFFQNNESGPHGFSHTSEAIEDGEVIGIITL 410

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQ 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASS+ARAPSSR+L+ QKG         
Sbjct: 411 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKGT-------- 462

Query: 481 GGQSKQG 487
           GGQ+KQG
Sbjct: 463 GGQNKQG 469

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/475 (73%), Positives = 392/475 (82%), Gaps = 11/475 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M  +NAV+A RML   +       SE IPFGS+ W  YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHPINAVVAARMLAG-ISQSNALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLM 59

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGTP EKKQ+AAIFPVVQKQHQLLVTLLL NA +ME LPIYLDK+FN+
Sbjct: 60  SLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNE 119

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLF GEVIPQAICTRYGLAVGAN VWLVRILM++ YPI++PI K+LDWVL
Sbjct: 120 YVAIILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVL 179

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHN+ LFRRAQLKALV+IH + AGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct: 180 GHNDPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 239

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLD EAM KI ARGHSRVPVYS NPKN+IGLLLVKSLLTVRPET T VSAV IRR
Sbjct: 240 LDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRR 299

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVP++MPLYDILNEFQKGSSHMAAVVK KGKSK  P     +    +     + +LTA
Sbjct: 300 IPRVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTA 359

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL K++   +SV+V +D+  ++G       S  S++   G  + SE+IEDG+VIGIITL
Sbjct: 360 PLLLKREGNHDSVIVRIDK--ANG------QSFISEAGRQGFSHTSEEIEDGDVIGIITL 411

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVA--AAAAASSVARAPSSRRLIGQKGAA 473
           EDVFEELLQEEIVDETDEY+DVHKRIRVA  AA A SS+ARAPS RRL+G KG+ 
Sbjct: 412 EDVFEELLQEEIVDETDEYIDVHKRIRVATVAAVAISSLARAPSGRRLLGPKGSG 466

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  623 bits (1607), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 325/470 (69%), Positives = 379/470 (80%), Gaps = 18/470 (3%)

Query: 25  SEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAA 84
           +E I FGS WWFV  G++C LVLFAGIMSGLTLGLMSLGLVELEILQ+SG+ +EKKQAAA
Sbjct: 23  AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query: 85  IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
           I PVV+KQHQLLVTLLLCNAA+MEALPI LDK+F+ +VA++LSVTFVL FGE+IPQAIC+
Sbjct: 83  ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAG 204
           RYGLAVGANF+WLVRILMIICYPIAYPIGK+LD V+GHN+ LFRRAQLKALV+IHSQEAG
Sbjct: 143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDTLFRRAQLKALVSIHSQEAG 202

Query: 205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
           KGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLDVN+KLDWE +GKIL+RGHSR+P
Sbjct: 203 KGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIP 262

Query: 265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
           VY GNPKNIIGLLLVKSLLTVR ETE PVS+VSIR+IPRVPSDMPLYDILNEFQKGSSHM
Sbjct: 263 VYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHM 322

Query: 325 AA--VVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLS 382
           AA   VK K K   +  +++G+ PK N       +LTAPLL  +   +  VVVD+D+ + 
Sbjct: 323 AAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHE---SHDVVVDIDK-VP 378

Query: 383 SGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDV 442
               NR  + Q++ + T  L    ED ED EVIGIITLEDVFEELLQ EIVDETD Y+DV
Sbjct: 379 KHVKNRGRNFQQNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQAEIVDETDVYIDV 438

Query: 443 HK--RIRVAAAAAASSVARAP----------SSRRLIGQKGAAVSGYPNQ 480
           HK  R+  AAAAA SS+ RA           + ++L+G++      Y  +
Sbjct: 439 HKRVRVAAAAAAAVSSITRASPAEIQSKVGQTVKKLVGKEARGTKNYTTK 488

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  424 bits (1090), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/422 (53%), Positives = 285/422 (67%), Gaps = 26/422 (6%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           +F++  +   LVLFAG+MSGLTLGLMSL LV+LE+L +SGTP  +K AA I PVV+ QH 
Sbjct: 12  FFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKNQHL 71

Query: 95  LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
           LLVTLL+CNAA+ME LPI+LD L   + AI++SVT +L FGE+IPQ+IC+RYGLA+GA  
Sbjct: 72  LLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIGATV 131

Query: 155 VWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDE 213
              VR+L+ IC P+A+PI K+LD++LGH  A LFRRA+LK LV  H  EAGKGGELTHDE
Sbjct: 132 APFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHDE 191

Query: 214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
           TTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + M  IL +GHSRVPVY   P NI
Sbjct: 192 TTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTNI 251

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IGL+LVK+LLT+ P+ E PV  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct: 252 IGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCDK 311

Query: 334 SKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSM--NRLSS 391
              LP     K   + EA+  D D      S+     +  ++   R L       NR SS
Sbjct: 312 IHPLP----SKNGSVKEAR-VDVD------SEGTPTPQERMLRTKRSLQKWKSFPNRASS 360

Query: 392 SQRSDSTTNGLIYASEDI------------EDGEVIGIITLEDVFEELLQEEIVDETDEY 439
            +    +         DI            E+ E +GIIT+EDV EELLQEEI DETD +
Sbjct: 361 FKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEIFDETDHH 420

Query: 440 VD 441
            +
Sbjct: 421 FE 422

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/412 (52%), Positives = 286/412 (69%), Gaps = 7/412 (1%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           +F++  +  +LVLFAG+MSGLTLGLMS+ LV+LE+L +SGTP ++  AA I PVV+ QH 
Sbjct: 12  FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query: 95  LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
           LL TLL+CNAA+MEALPI+LD L   + AI++SVT +L FGE+IPQ++C+R+GLA+GA  
Sbjct: 72  LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query: 155 VWLVRILMIICYPIAYPIGKILDWVLGHNE-ALFRRAQLKALVTIHSQEAGKGGELTHDE 213
              VR+L+ IC P+A+PI K+LD++LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct: 132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query: 214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
           TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + M  IL +GHSRVPVY     NI
Sbjct: 192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IGL+LVK+LLT+ P+ E  V  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct: 252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDK 311

Query: 334 SKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ 393
              L    D     +NE +  D D        + ++  S+      P  + S+   S   
Sbjct: 312 IHPLQS-NDAANETVNEVR-VDVDYERSPQETKLKRRRSLQKWKSFPNRANSLGSRSKRW 369

Query: 394 RSDSTTNGLIYASEDI----EDGEVIGIITLEDVFEELLQEEIVDETDEYVD 441
             D+  + L      +    E+ + +GIIT+EDV EELLQEEI DETD + +
Sbjct: 370 SKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQEEIFDETDHHFE 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  417 bits (1072), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/516 (46%), Positives = 319/516 (61%), Gaps = 33/516 (6%)

Query: 25  SEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAA 84
           S  IP     + +Y  I   LV FAG+M+GLTLGLMSLGLV+LE+L +SG P ++  A  
Sbjct: 2   SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query: 85  IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
           IFPVV+ QH LL TLL+ N+ +MEALPI+LDK+   ++AI+LSVT +L FGE++PQA+CT
Sbjct: 62  IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEA 203
           RYGL VGA     VR+L+++ +PI+YPI K+LDW+LG     L RRA+LK  V  H  EA
Sbjct: 122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query: 204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
           GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct: 182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query: 264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
           PVY  NP +IIGL+LVK+LL V    E P+  +S+R+IPRV   MPLYDILNEFQKG SH
Sbjct: 242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query: 324 MAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK---QDEKTESVVVDVDR- 379
           +A V K   + +  P  ++    +    K  D +L      K   Q E +E  V  ++  
Sbjct: 302 IAVVYKDLDEQEQSPETSENGIERRKNKKTKD-ELFKDSCRKPKAQFEVSEKEVFKIETG 360

Query: 380 PLSSGSMNRLSSSQRSDSTT----------NGLIYASEDIEDG---------EVIGIITL 420
              SG        Q S  T+           G  +   DIE+          EV+G+IT+
Sbjct: 361 DAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIPDFPTNEEVVGVITM 420

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQ 480
           EDV EELLQEEI+DETDEYV++H RIRV   A+  ++   PS    I Q  +  S  PNQ
Sbjct: 421 EDVIEELLQEEILDETDEYVNIHNRIRVNMHASPENL---PSVITSITQSSSG-STSPNQ 476

Query: 481 GGQSKQGLPPKKAAESDSSSTR----ATPSDPPLDS 512
                          S+SS TR    ++P+  P DS
Sbjct: 477 TSHMATPDSSPTTKPSNSSPTRKPSVSSPTREPSDS 512

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/434 (49%), Positives = 296/434 (68%), Gaps = 29/434 (6%)

Query: 24  SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAA 83
           ++  +P     ++VY  +   LV+FAG+MSGLTLGLMSL +VELE++ ++G P ++K A 
Sbjct: 2   AANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAE 61

Query: 84  AIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAIC 143
            I P+V+ QH LL TLL+ NA +MEALPI++D L   + AI++SVT +L FGE+IPQA+C
Sbjct: 62  KILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVC 121

Query: 144 TRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHSQE 202
           +RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  +  L  RA+LK+LV +H  E
Sbjct: 122 SRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNE 181

Query: 203 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262
           AGKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + MG I + GHSR
Sbjct: 182 AGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSR 241

Query: 263 VPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSS 322
           +P+YS NP  IIG +LVK+L+ VRPE ET +  + IRR+P+V  ++PLYDILN FQ G S
Sbjct: 242 IPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRS 301

Query: 323 HMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLS 382
           HMAAVV  K  + T  P+ + K    +  K  +  L+ P L+  +   +S +  +D    
Sbjct: 302 HMAAVVGTKNHTNTNTPVHE-KSINGSPNKDANVFLSIPALNSSETSHQSPIRYID---- 356

Query: 383 SGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDV 442
                       SD             ED EVIGIITLEDV EEL+QEEI DETD+YV++
Sbjct: 357 ----------SISD-------------EDEEVIGIITLEDVMEELIQEEIYDETDQYVEL 393

Query: 443 HKRIRVAAAAAASS 456
           HKRI +    + +S
Sbjct: 394 HKRITINMPMSGNS 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  236 bits (601), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 6/302 (1%)

Query: 38  YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQK-QHQLL 96
           Y  IS +LVL  G+ +GLTLGLM    V L+++  SG+ SEKK A  +  ++ + +H +L
Sbjct: 64  YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query: 97  VTLLLCNAASMEALPIYLDK-LFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFV 155
           VTLLL N  + E LPI LD+ L   + A++ S   ++ FGE+IPQ++C +YGL VGA F 
Sbjct: 124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query: 156 WLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDET 214
             V +LM + YP+AYPI  +LD++LG +   +++++ LK LVT+H     +   LT DE 
Sbjct: 184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query: 215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNI 273
           TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+P++  N P N 
Sbjct: 242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IG+LLV+ L++  P+   P+S   +  +P    +    +ILN FQ+G +HM  V K  G 
Sbjct: 302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGS 361

Query: 334 SK 335
           S 
Sbjct: 362 SH 363

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 187/297 (62%), Gaps = 6/297 (2%)

Query: 41  ISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQK-QHQLLVTL 99
           IS VL+L  G+ +GLT+GLM    + L++L++SG  SE+  A  +  ++++ +H +LVTL
Sbjct: 68  ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKHWVLVTL 127

Query: 100 LLCNAASMEALPIYLDKLFNQ-YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLV 158
           LL N    E LPI  D +    + A+++S   ++ FGEVIPQA C RYGL++GA    +V
Sbjct: 128 LLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGAKLEPIV 187

Query: 159 RILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDETTII 217
             +M + +PIAYP   ILD  LG +++ +++++ LK LVT+H ++ G   +L  DE TII
Sbjct: 188 LFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLH-RDLGI-DKLNQDEVTII 245

Query: 218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS-GNPKNIIGL 276
           +  LDL EK AE  MTPIE  F+L ++  LD + +G+I+  G+SR+PV+  G P + IG+
Sbjct: 246 TAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFPHDFIGM 305

Query: 277 LLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           LL K+L+   P+ + PV   ++  +P+   +    D+LN  Q+G SHM  +  + G+
Sbjct: 306 LLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILISNSPGE 362

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score =  219 bits (557), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 186/320 (58%), Gaps = 15/320 (4%)

Query: 26  EGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAI 85
           E  P   +W  + A I  VL+  +GI SGL LGLM+L  +EL ++QR GT  EK+ A+ I
Sbjct: 172 EEKPLLPIW--LQACIIAVLLTLSGIFSGLNLGLMALDPMELRVVQRCGTEKEKRYASKI 229

Query: 86  FPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIIL-SVTFVLFFGEVIPQAICT 144
            PV +K + LL +LLL N      L   LD+L    +A +L S T ++  GE++PQA+C+
Sbjct: 230 EPVRRKGNYLLCSLLLGNVLVNTTLTALLDELIGSGLAAVLASTTGIVVLGEIVPQALCS 289

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHN-EALFRRAQLKALVTIHSQEA 203
           R+GLAVGAN +WL RI M++ +P+AYP+ ++LD  LG     ++ R +L  ++ +    +
Sbjct: 290 RHGLAVGANTLWLTRIFMLLTFPVAYPVSRLLDCALGQEIGTVYNREKLLEMLKVTEPYS 349

Query: 204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
           G    +  +E  II GAL+L  KT E+ MT +E  F L  ++ LD+  M  I+  G++R+
Sbjct: 350 G----IVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRI 405

Query: 264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP-----SDMPLYDILNEFQ 318
           PVY     NI+ +L VK L  V P+  TP+S  +I R    P     SD  L  +L EF+
Sbjct: 406 PVYENERSNIVDILYVKDLAFVDPDDCTPLS--TITRFYSHPLHFVFSDTKLDAVLEEFK 463

Query: 319 KGSSHMAAVVKAKGKSKTLP 338
           KG SH+A V K   + +  P
Sbjct: 464 KGKSHLAIVQKVNSEGEGDP 483

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
255551477	502	conserved hypothetical protein [Ricinus	0.951	0.972	0.830	0.0
224102601	500	predicted protein [Populus trichocarpa]	0.949	0.974	0.838	0.0
356557879	489	PREDICTED: DUF21 domain-containing prote	0.951	0.997	0.815	0.0
224107237	502	predicted protein [Populus trichocarpa]	0.972	0.994	0.805	0.0
449465210	496	PREDICTED: DUF21 domain-containing prote	0.943	0.975	0.808	0.0
449528085	496	PREDICTED: DUF21 domain-containing prote	0.943	0.975	0.808	0.0
356521943	493	PREDICTED: DUF21 domain-containing prote	0.943	0.981	0.793	0.0
356564538	493	PREDICTED: DUF21 domain-containing prote	0.943	0.981	0.797	0.0
225432520	505	PREDICTED: DUF21 domain-containing prote	0.974	0.990	0.781	0.0
225436964	504	PREDICTED: putative DUF21 domain-contain	0.941	0.958	0.768	0.0

>gi|255551477|ref|XP_002516784.1| conserved hypothetical protein [Ricinus communis] gi|223543872|gb|EEF45398.1| conserved hypothetical protein [Ricinus communis]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/502 (83%), Positives = 447/502 (89%), Gaps = 14/502 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M L+NAVMATRMLT   ++ G   SEGIPFGS+WWF+YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLVNAVMATRMLTMLGQSNG--VSEGIPFGSIWWFIYAGISCFLVLFAGIMSGLTLGLM 58

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGT SEKKQAAAI PVVQKQHQLLVTLLLCNAA+MEALPIYLDKLFNQ
Sbjct: 59  SLGLVELEILQRSGTSSEKKQAAAILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKLFNQ 118

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLFFGEVIPQ+IC+RYGLAVGANFVWLVRILMIICYPI+YPIGKILDWVL
Sbjct: 119 YVAIILSVTFVLFFGEVIPQSICSRYGLAVGANFVWLVRILMIICYPISYPIGKILDWVL 178

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLK LV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 179 GHNEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGK+LARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 239 LDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 298

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVK+K KSK   PMT G+K + N+A  GD +LT 
Sbjct: 299 IPRVPSDMPLYDILNEFQKGSSHMAAVVKSKAKSKI--PMTTGEKQEENKATAGDSELTI 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL KQDEK ++V++D+DR +S  S N+ +SSQR D+ TNGL+ +SEDIEDGEVIGIITL
Sbjct: 357 PLLVKQDEKLDTVILDMDR-VSRLSSNKQTSSQRFDAATNGLVQSSEDIEDGEVIGIITL 415

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQ 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL   KG    G P Q
Sbjct: 416 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGTGAQGKPGQ 475

Query: 481 GGQSKQGLPPKKAAESDSSSTR 502
                      + +E+DSSS R
Sbjct: 476 A---------LRKSENDSSSPR 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102601|ref|XP_002312743.1| predicted protein [Populus trichocarpa] gi|222852563|gb|EEE90110.1| predicted protein [Populus trichocarpa]

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/502 (83%), Positives = 447/502 (89%), Gaps = 15/502 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           MQL+NAVMATRMLT   ++ G    +GIPFGSV WFVYAGISC LV+FAGIMSGLTLGLM
Sbjct: 1   MQLINAVMATRMLTVLAQSNG---EDGIPFGSVSWFVYAGISCFLVIFAGIMSGLTLGLM 57

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFNQ
Sbjct: 58  SLGLVDLEILQRSGTSTEKKQAAAILPVVQKQHQLLVTLLLCNAIAMEALPIYLDKLFNQ 117

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILMI CYP+AYPIGK+LD VL
Sbjct: 118 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMITCYPVAYPIGKVLDCVL 177

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 178 GHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 237

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 238 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 297

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK LPP  DG++ + ++  G D  LT 
Sbjct: 298 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKDLPPAIDGEEQEGSKVTGRDSQLTT 357

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLLSKQDEK++SVVVD+DR   S   +R  SSQR+D++TNGL   SEDIEDGEVIGIITL
Sbjct: 358 PLLSKQDEKSDSVVVDIDRVSRS---SRHPSSQRNDTSTNGLPQLSEDIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQ 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL   KGA        
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGA-------- 466

Query: 481 GGQSKQGLPPKKAAESDSSSTR 502
           GGQ K G   KK +E+DSS+TR
Sbjct: 467 GGQIKSGQTLKK-SENDSSATR 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557879|ref|XP_003547237.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/503 (81%), Positives = 444/503 (88%), Gaps = 15/503 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M +++A+M TR+LT      G P  EGIPFGSVWWFVYAGIS  LV+FAGIMSGLTLGLM
Sbjct: 1   MNVVSALMVTRLLTRNQL--GAP--EGIPFGSVWWFVYAGISFFLVIFAGIMSGLTLGLM 56

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSG+PSEKKQAA I PVVQKQHQLLVTLLLCNAA+MEALPIYLDK+FNQ
Sbjct: 57  SLGLVDLEILQRSGSPSEKKQAAVILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKMFNQ 116

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLFFGEVIPQAIC+RYGLAVGANFVWLVRILMIICYP+AYPIGK+LD +L
Sbjct: 117 YVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFVWLVRILMIICYPVAYPIGKVLDCLL 176

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLK LV+IHSQEAGKGGELTHDETTIISGALDLTEKTAE AMTPIESTFS
Sbjct: 177 GHNEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEAAMTPIESTFS 236

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 237 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 296

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVV+A+GK KT+P  TD +  + N+  GGD  LTA
Sbjct: 297 IPRVPSDMPLYDILNEFQKGSSHMAAVVRARGKGKTIPETTDEETYEENKGVGGDSQLTA 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL KQ+EK+ES +VD+D+   S S+N+ +  QRSDST NG    S++IEDGEVIGIITL
Sbjct: 357 PLLQKQNEKSESFIVDIDKFSRSPSINKSTGLQRSDSTRNGSF--SDNIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQ 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPS RRL  QKGA        
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSIRRLTAQKGA-------- 466

Query: 481 GGQSKQGLPPKKAAESDSSSTRA 503
           GGQSK GL  KK+AE D S+TR+
Sbjct: 467 GGQSKPGLTLKKSAE-DGSNTRS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107237|ref|XP_002314418.1| predicted protein [Populus trichocarpa] gi|222863458|gb|EEF00589.1| predicted protein [Populus trichocarpa]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/515 (80%), Positives = 443/515 (86%), Gaps = 16/515 (3%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           MQLLNAVMATRMLT     GG  + + IPFGS  WF YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MQLLNAVMATRMLTEL---GGQSNGDEIPFGSFSWFAYAGISCFLVLFAGIMSGLTLGLM 57

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ
Sbjct: 58  SLGLVDLEILQRSGTSTEKKQAAAILPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 117

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQ+ICTRYGLAVGANFVWLVRILMI+CYPI+YPIGK+LD VL
Sbjct: 118 YVAIILSVTFVLAFGEVIPQSICTRYGLAVGANFVWLVRILMILCYPISYPIGKVLDCVL 177

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLKALV+IH  EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 178 GHNEALFRRAQLKALVSIHGLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 237

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGK+LARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 238 LDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 297

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK LPP  DGK+ + N+  G +  LT 
Sbjct: 298 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKALPPTIDGKEHEGNKVTGKESQLTT 357

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLLS  +EK +SVVVD+DR       +R  S QR+D++  G+   SEDIEDGEVIGIITL
Sbjct: 358 PLLSMPNEKLDSVVVDMDR---VSRPSRQPSLQRNDASIKGMTLLSEDIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYPNQ 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL   KG+        
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGSG------- 467

Query: 481 GGQSKQGLPPKKAAESDSSSTR--ATPSDPPLDSK 513
           G QSK G   KK +E+DSS+TR   T  +P L +K
Sbjct: 468 GHQSKPGQTLKK-SENDSSATRLQGTAGEPFLGNK 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465210|ref|XP_004150321.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/497 (80%), Positives = 431/497 (86%), Gaps = 13/497 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG-IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGL 59
           M  +NAVM TRMLT   +N G  S  G IPFGS+ WF YAGISCV VLFAGIMSGLTLGL
Sbjct: 1   MHFINAVMLTRMLT---RNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGL 57

Query: 60  MSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFN 119
           MSLGLV+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFN
Sbjct: 58  MSLGLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFN 117

Query: 120 QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV 179
           QYVAIILSVTFVL FGEVIPQAICTRYGLAVGANFV LVRILM+ICYPIAYPIGKILD +
Sbjct: 118 QYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCL 177

Query: 180 LGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 239
           LGHNEALFRRAQLKALV+IHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 178 LGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237

Query: 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 299
           SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR
Sbjct: 238 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 297

Query: 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT 359
           RIPRVPSDMPLYDILNEFQKGSSHMAAVVK KGK+K LPP  DG++ + N+A G +  LT
Sbjct: 298 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLT 357

Query: 360 APLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD-STTNGLIYASEDIEDGEVIGII 418
           APLL K DE ++SVV+D+DR   +  ++R  S +R+D S+ NG  ++SEDIEDGEVIGII
Sbjct: 358 APLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGII 417

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYP 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASS+ARAPS RRL  QKG       
Sbjct: 418 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAPSIRRLTAQKGGQ----- 472

Query: 479 NQGGQSKQGLPPKKAAE 495
               Q+KQ   PKK+ E
Sbjct: 473 ---HQTKQAQTPKKSTE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528085|ref|XP_004171037.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/497 (80%), Positives = 431/497 (86%), Gaps = 13/497 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG-IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGL 59
           M  +NAVM TRMLT   +N G  S  G IPFGS+ WF YAGISCV VLFAGIMSGLTLGL
Sbjct: 1   MHFINAVMLTRMLT---RNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGL 57

Query: 60  MSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFN 119
           MSLGLV+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFN
Sbjct: 58  MSLGLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFN 117

Query: 120 QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV 179
           QYVAIILSVTFVL FGEVIPQAICTRYGLAVGANFV LVRILM+ICYPIAYPIGKILD +
Sbjct: 118 QYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCL 177

Query: 180 LGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 239
           LGHNEALFRRAQLKALV+IHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 178 LGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237

Query: 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 299
           SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR
Sbjct: 238 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 297

Query: 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT 359
           RIPRVPSDMPLYDILNEFQKGSSHMAAVVK KGK+K LPP  DG++ + N+A G +  LT
Sbjct: 298 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLT 357

Query: 360 APLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD-STTNGLIYASEDIEDGEVIGII 418
           APLL K DE ++SVV+D+DR   +  ++R  S +R+D S+ NG  ++SEDIEDGEVIGII
Sbjct: 358 APLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGII 417

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYP 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASS+ARAPS RRL  QKG       
Sbjct: 418 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAPSIRRLTAQKGGQ----- 472

Query: 479 NQGGQSKQGLPPKKAAE 495
               Q+KQ   PKK+ E
Sbjct: 473 ---HQTKQAQTPKKSTE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521943|ref|XP_003529609.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/499 (79%), Positives = 437/499 (87%), Gaps = 15/499 (3%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGP--SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           M+ ++A+M  RMLT   ++   P   +E IPFGSVWWF YAG+SC LVLFAGIMSGLTLG
Sbjct: 1   MRAVSALMVARMLT---RDHSLPVLGNESIPFGSVWWFAYAGVSCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLGLV+LEIL+RSG+P+EK QAA I PVV+KQHQLLVTLLLCNA +MEALP+YLDKLF
Sbjct: 58  LMSLGLVDLEILERSGSPAEKMQAAIILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAIILSVTFVLFFGEVIPQAIC+RYGLAVGANF WLVRILMIICYP++YP+GK+LD 
Sbjct: 118 NQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDH 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           +LGHNEALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 LLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGK+LARGHSRVPVYSGNP+NIIGLLLVKSLLTVRPETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA+GK K  P + D +K + N++ GGD  L
Sbjct: 298 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENKSIGGDSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLL KQD K+ SVVVD+ +P    S+N+LS  QRSDSTTNG   +SE+IEDGEVIGII
Sbjct: 358 TTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNG--PSSENIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYP 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL  QKGA +    
Sbjct: 416 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTSQKGAGI---- 471

Query: 479 NQGGQSKQGLPPKKAAESD 497
               QSK G  PKK+AE +
Sbjct: 472 ----QSKPGQAPKKSAEEN 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564538|ref|XP_003550510.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/499 (79%), Positives = 435/499 (87%), Gaps = 15/499 (3%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGP--SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           M+ ++A+M  RMLT   ++   P   SE IPF SVWWFVYAGISC LVLFAGIMSGLTLG
Sbjct: 1   MRAVSALMVARMLT---RDHSLPVLCSESIPFRSVWWFVYAGISCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLGLV+LEIL+RSG+P EK QAA I PVV+KQHQLLVTLLLCNA +MEALP+YLDKLF
Sbjct: 58  LMSLGLVDLEILERSGSPVEKMQAAVILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAIILSVTFVLFFGEVIPQAIC+RYGLAVGANF WLVRILMIICYP++YP+GK+LD 
Sbjct: 118 NQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDH 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           +LGHNEALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 LLGHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGK+LARGHSRVPVYSGNP+NIIGLLLVKSLLTVRPETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA+GK K  P + D +K + NE+ GGD  L
Sbjct: 298 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENESIGGDSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLL KQD K+ SVVVD+ +P    S+N+LS  QRSD TTNG   +SE+IEDGEVIGII
Sbjct: 358 TTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNG--PSSENIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYP 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL  QKGA +    
Sbjct: 416 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTNQKGAGI---- 471

Query: 479 NQGGQSKQGLPPKKAAESD 497
               QSK G   KK+AE +
Sbjct: 472 ----QSKPGQAQKKSAEEN 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432520|ref|XP_002280174.1| PREDICTED: DUF21 domain-containing protein At4g14240 [Vitis vinifera]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/517 (78%), Positives = 436/517 (84%), Gaps = 17/517 (3%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG--IPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           MQL+NAV   RM     +N G  S  G  I FGS+W+F+Y GI C LVLFAGIMSGLTLG
Sbjct: 1   MQLINAVAIARM---AARNLGAESLGGGDIAFGSLWFFIYVGICCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLG V+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA SMEALP+YLDKLF
Sbjct: 58  LMSLGRVDLEILQRSGTSDEKKQAAAILPVVQKQHQLLVTLLLCNACSMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAI+LSVTFVL FGEVIPQAIC+RYGL+VGANFVWLVRILMIICYPIAYPIGKILDW
Sbjct: 118 NQFVAIVLSVTFVLAFGEVIPQAICSRYGLSVGANFVWLVRILMIICYPIAYPIGKILDW 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           VLGHNEALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 VLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVR ETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRAETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVP+DMPLYDILNEFQKGSSHMAAVVK KG++K  P + DGK  + N+  G D  L
Sbjct: 298 RRIPRVPADMPLYDILNEFQKGSSHMAAVVKPKGRNKNAPQVMDGKITEENKITGADSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLLSKQDEK ES+VVD+++      +NR   SQ SD+ TNGL   SEDIEDGEVIGII
Sbjct: 358 TTPLLSKQDEKLESIVVDIEKASRPTIINR--QSQHSDAATNGLPRLSEDIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGYP 478
           TLEDVFEELLQEEIVDETDE+VDVHKRIRVAAAAAASS+ARAPS RRL G KGA      
Sbjct: 416 TLEDVFEELLQEEIVDETDEFVDVHKRIRVAAAAAASSIARAPSIRRLTGHKGA------ 469

Query: 479 NQGGQSKQGLPPKKAAESDSSSTR--ATPSDPPLDSK 513
             GGQ+KQ   PKK+ E DS+S R    P +  L +K
Sbjct: 470 --GGQTKQVQSPKKSIEEDSNSARLHGNPGESLLGNK 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436964|ref|XP_002276672.1| PREDICTED: putative DUF21 domain-containing protein At1g03270 [Vitis vinifera]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/501 (76%), Positives = 429/501 (85%), Gaps = 18/501 (3%)

Query: 1   MQLLNAVMATRMLTS---TMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTL 57
           M LLNA+    M T+    ++      +E I FGS+WWFVYAG+SC LVLFAGIMSGLTL
Sbjct: 1   MSLLNALTLGSMPTTGEFVLR------TEDIEFGSLWWFVYAGVSCFLVLFAGIMSGLTL 54

Query: 58  GLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKL 117
           GLMSLGLVELEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDK+
Sbjct: 55  GLMSLGLVELEILQRSGTSAEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKI 114

Query: 118 FNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILD 177
           F+ +VAI+LSVTFVL FGE+IPQAICTRYGL+VGANFVWLVRILMIICYPIA+PIGK+LD
Sbjct: 115 FHPFVAILLSVTFVLAFGEIIPQAICTRYGLSVGANFVWLVRILMIICYPIAFPIGKVLD 174

Query: 178 WVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES 237
            VLGHN+ALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES
Sbjct: 175 AVLGHNDALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES 234

Query: 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVS 297
           TFSLDVNSKLDWEA+GKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR ETETPVSAVS
Sbjct: 235 TFSLDVNSKLDWEAIGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRAETETPVSAVS 294

Query: 298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCD 357
           IR+IPRVP+DMPLYDILNEFQKGSSHMAAVVK KGK+K   P  DG++ + N+   G+  
Sbjct: 295 IRKIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKNKNPLPKGDGERFEENKVANGNSQ 354

Query: 358 LTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGI 417
            T PLL+  ++K+E+VVVD+D+     + N+ + SQ++ +TTN L +  EDIEDGEVIGI
Sbjct: 355 YTTPLLANDNDKSENVVVDIDKVPKPTNTNKQTPSQQNGATTNSLPHLPEDIEDGEVIGI 414

Query: 418 ITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAAVSGY 477
           ITLEDVFEELLQEEIVDETD YVDVHKRIRVAAAAAAS VARAPSSRRL GQK A     
Sbjct: 415 ITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAASFVARAPSSRRLTGQKPA----- 469

Query: 478 PNQGGQSKQGLPPKKAAESDS 498
              GGQS+QG  PKK+AE DS
Sbjct: 470 ---GGQSRQG-TPKKSAEDDS 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.922	0.957	0.674	2.8e-160
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.935	0.969	0.625	3.1e-147
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.686	0.705	0.719	5.5e-143
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.592	0.716	0.573	5.4e-96
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.617	0.749	0.545	3.4e-94
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.690	0.708	0.460	2.1e-92
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.619	0.603	0.501	7.1e-90
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.649	0.465	0.358	6.9e-63
SGD|S000005421	706	MAM3 "Protein required for nor	0.575	0.417	0.385	1.6e-59
POMBASE|SPCC4B3.03c	679	SPCC4B3.03c "mitochondrial mor	0.608	0.459	0.359	1.6e-57

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
 Identities = 328/486 (67%), Positives = 361/486 (74%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             M L+NAV A R+L+   ++ G    E IPFGS  W  YAGISC LVLFA           
Sbjct:     1 MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query:    61 XXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
                     ILQRSGTP+EKKQAAAIFPVVQKQHQLLVTLLLCNA +ME LPIYLDKLFN+
Sbjct:    61 SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query:   121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
             YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct:   121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query:   181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
             GHN+ALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct:   181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
             LDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVRPETET VSAV IRR
Sbjct:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query:   301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
             IPRVP+DMPLYDILNEFQKGSSHMAAVVK KGKSK +PP T  ++   +  +  D DLTA
Sbjct:   301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK-VPPSTLLEE---HTDESNDSDLTA 356

Query:   361 PLLSKQDEKTESVVVDVDRPXXXXXXXXXXXXXXXXXXXXXLIYASXXXXXXXXXXXXTL 420
             PLL K++   ++V+V +D+                        + S            TL
Sbjct:   357 PLLLKREGNHDNVIVTIDKANGQSFFQNNESGPHGFS------HTSEAIEDGEVIGIITL 410

Query:   421 EDVFEELLQEEIVDETDEYVDVHKRIXXXXXXXXXXXXXXXXXXXLIGQKGAAVSGYPNQ 480
             EDVFEELLQEEIVDETDEYVDVHKRI                   L+ QKG   +G  N+
Sbjct:   411 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKG---TGGQNK 467

Query:   481 GGQSKQ 486
              GQ+ +
Sbjct:   468 QGQTNK 473

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
 Identities = 309/494 (62%), Positives = 342/494 (69%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             M  +NAV+A RML   +       SE IPFGS+ W  YAGISC LVLFA           
Sbjct:     1 MHPINAVVAARMLAG-ISQSNALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLM 59

Query:    61 XXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
                     ILQRSGTP EKKQ+AAIFPVVQKQHQLLVTLLL NA +ME LPIYLDK+FN+
Sbjct:    60 SLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNE 119

Query:   121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
             YVAIILSVTFVLF GEVIPQAICTRYGLAVGAN VWLVRILM++ YPI++PI K+LDWVL
Sbjct:   120 YVAIILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVL 179

Query:   181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
             GHN+ LFRRAQLKALV+IH + AGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct:   180 GHNDPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 239

Query:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
             LDVNSKLD EAM KI ARGHSRVPVYS NPKN+IGLLLVKSLLTVRPET T VSAV IRR
Sbjct:   240 LDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRR 299

Query:   301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
             IPRVP++MPLYDILNEFQKGSSHMAAVVK KGKSK  P     +    +     + +LTA
Sbjct:   300 IPRVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTA 359

Query:   361 PLLSKQDEKTESVVVDVDRPXXXXXXXXXXXXXXXXXXXXXLIYASXXXXXXXXXXXXTL 420
             PLL K++   +SV+V +D+                        + S            TL
Sbjct:   360 PLLLKREGNHDSVIVRIDKANGQSFISEAGRQGFS--------HTSEEIEDGDVIGIITL 411

Query:   421 EDVFEELLQEEIVDETDEYVDVHKRIXXXXXXXXXXXXXXXXXXX--LIGQKGAAVSGYP 478
             EDVFEELLQEEIVDETDEY+DVHKRI                     L+G KG   SG P
Sbjct:   412 EDVFEELLQEEIVDETDEYIDVHKRIRVATVAAVAISSLARAPSGRRLLGPKG---SGGP 468

Query:   479 NQGGQSKQGLPPKK 492
                  S    P  K
Sbjct:   469 KTPKASSTPKPDDK 482

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1293 (460.2 bits), Expect = 5.5e-143, Sum P(2) = 5.5e-143
 Identities = 257/357 (71%), Positives = 296/357 (82%)

Query:    25 SEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAA 84
             +E I FGS WWFV  G++C LVLFA                   ILQ+SG+ +EKKQAAA
Sbjct:    23 AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query:    85 IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
             I PVV+KQHQLLVTLLLCNAA+MEALPI LDK+F+ +VA++LSVTFVL FGE+IPQAIC+
Sbjct:    83 ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query:   145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAG 204
             RYGLAVGANF+WLVRILMIICYPIAYPIGK+LD V+GHN+ LFRRAQLKALV+IHSQEAG
Sbjct:   143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDTLFRRAQLKALVSIHSQEAG 202

Query:   205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
             KGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLDVN+KLDWE +GKIL+RGHSR+P
Sbjct:   203 KGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIP 262

Query:   265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
             VY GNPKNIIGLLLVKSLLTVR ETE PVS+VSIR+IPRVPSDMPLYDILNEFQKGSSHM
Sbjct:   263 VYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHM 322

Query:   325 AAVVKAKGKSK--TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDR 379
             AAVVK K K K   +  +++G+ PK N       +LTAPLL  +   +  VVVD+D+
Sbjct:   323 AAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHE---SHDVVVDIDK 376

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 5.4e-96, Sum P(2) = 5.4e-96
 Identities = 175/305 (57%), Positives = 219/305 (71%)

Query:    35 WFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQ 94
             +F++  +   LVLFA                   +L +SGTP  +K AA I PVV+ QH 
Sbjct:    12 FFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKNQHL 71

Query:    95 LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
             LLVTLL+CNAA+ME LPI+LD L   + AI++SVT +L FGE+IPQ+IC+RYGLA+GA  
Sbjct:    72 LLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIGATV 131

Query:   155 VWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDE 213
                VR+L+ IC P+A+PI K+LD++LGH  A LFRRA+LK LV  H  EAGKGGELTHDE
Sbjct:   132 APFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHDE 191

Query:   214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
             TTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + M  IL +GHSRVPVY   P NI
Sbjct:   192 TTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTNI 251

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IGL+LVK+LLT+ P+ E PV  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct:   252 IGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCDK 311

Query:   334 SKTLP 338
                LP
Sbjct:   312 IHPLP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
 Identities = 174/319 (54%), Positives = 225/319 (70%)

Query:    35 WFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQ 94
             +F++  +  +LVLFA                   +L +SGTP ++  AA I PVV+ QH 
Sbjct:    12 FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query:    95 LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
             LL TLL+CNAA+MEALPI+LD L   + AI++SVT +L FGE+IPQ++C+R+GLA+GA  
Sbjct:    72 LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query:   155 VWLVRILMIICYPIAYPIGKILDWVLGHNE-ALFRRAQLKALVTIHSQEAGKGGELTHDE 213
                VR+L+ IC P+A+PI K+LD++LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct:   132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query:   214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
             TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + M  IL +GHSRVPVY     NI
Sbjct:   192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IGL+LVK+LLT+ P+ E  V  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct:   252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDK 311

Query:   334 SKTLPPMTDGKKPKLNEAK 352
                L    D     +NE +
Sbjct:   312 IHPLQS-NDAANETVNEVR 329

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
 Identities = 164/356 (46%), Positives = 238/356 (66%)

Query:    24 SSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAA 83
             ++  +P     ++VY  +   LV+FA                   ++ ++G P ++K A 
Sbjct:     2 AANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAE 61

Query:    84 AIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAIC 143
              I P+V+ QH LL TLL+ NA +MEALPI++D L   + AI++SVT +L FGE+IPQA+C
Sbjct:    62 KILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVC 121

Query:   144 TRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHSQE 202
             +RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  +  L  RA+LK+LV +H  E
Sbjct:   122 SRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNE 181

Query:   203 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262
             AGKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + MG I + GHSR
Sbjct:   182 AGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSR 241

Query:   263 VPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSS 322
             +P+YS NP  IIG +LVK+L+ VRPE ET +  + IRR+P+V  ++PLYDILN FQ G S
Sbjct:   242 IPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRS 301

Query:   323 HMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD 378
             HMAAVV  K  + T  P+ + K    +  K  +  L+ P L+  +   +S +  +D
Sbjct:   302 HMAAVVGTKNHTNTNTPVHE-KSINGSPNKDANVFLSIPALNSSETSHQSPIRYID 356

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 160/319 (50%), Positives = 215/319 (67%)

Query:    25 SEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAA 84
             S  IP     + +Y  I   LV FA                   +L +SG P ++  A  
Sbjct:     2 SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query:    85 IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
             IFPVV+ QH LL TLL+ N+ +MEALPI+LDK+   ++AI+LSVT +L FGE++PQA+CT
Sbjct:    62 IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query:   145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEA 203
             RYGL VGA     VR+L+++ +PI+YPI K+LDW+LG     L RRA+LK  V  H  EA
Sbjct:   122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query:   204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
             GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct:   182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query:   264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
             PVY  NP +IIGL+LVK+LL V    E P+  +S+R+IPRV   MPLYDILNEFQKG SH
Sbjct:   242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query:   324 MAAVVKAKGKSKTLPPMTD 342
             +A V K   + +  P  ++
Sbjct:   302 IAVVYKDLDEQEQSPETSE 320

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 556 (200.8 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
 Identities = 122/340 (35%), Positives = 195/340 (57%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             + L++A   ++ L    ++     +  +P      ++Y G++  LVL             
Sbjct:    29 ISLVSAAPTSQFLAP--RHDAHAETHALPANDATLWLYLGVAAALVLTGGAFAGLTIALM 86

Query:    61 XXXXXXXXILQRSG-TPSEKKQAAAIFPVVQK-QHQLLVTLLLCNAASMEALPIYLDK-L 117
                     ++Q SG +PSE+K AA++  ++++ +H +LVTLLL N  + E LPI LD+ L
Sbjct:    87 GQDEVYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSL 146

Query:   118 FNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILD 177
                + A++ S   ++ FGE++PQ+IC RYGL +GA     V  LM +  P+A+P+ K+LD
Sbjct:   147 GGGWPAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLD 206

Query:   178 WVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIE 236
              +LG +   ++++A LK LVT+H      G +L  DE TIIS  LDL EK+    MTP+E
Sbjct:   207 RLLGEDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPME 266

Query:   237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPETETPVSA 295
               F++  ++ LD   M  IL++G+SR+P++S  NP+N IG+LLVK L+T  PE   PVS 
Sbjct:   267 DVFTMSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSH 326

Query:   296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK 335
              ++  +P    +    DI+N FQ+G SHM  V +  G+ +
Sbjct:   327 FALATLPETRPETSCLDIVNFFQEGKSHMVLVSEFPGEDR 366

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

SGD|S000005421 MAM3 "Protein required for normal mitochondrial morphology" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 529 (191.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 116/301 (38%), Positives = 173/301 (57%)

Query:    38 YAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQK-QHQLL 96
             Y  IS +LVL                     ++  SG+ SEKK A  +  ++ + +H +L
Sbjct:    64 YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query:    97 VTLLLCNAASMEALPIYLDK-LFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFV 155
             VTLLL N  + E LPI LD+ L   + A++ S   ++ FGE+IPQ++C +YGL VGA F 
Sbjct:   124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query:   156 WLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDET 214
               V +LM + YP+AYPI  +LD++LG +   +++++ LK LVT+H     +   LT DE 
Sbjct:   184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query:   215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNI 273
             TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+P++  N P N 
Sbjct:   242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IG+LLV+ L++  P+   P+S   +  +P    +    +ILN FQ+G +HM  V K  G 
Sbjct:   302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGS 361

Query:   334 S 334
             S
Sbjct:   362 S 362

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0030026 "cellular manganese ion homeostasis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

POMBASE|SPCC4B3.03c SPCC4B3.03c "mitochondrial morphology protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 502 (181.8 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 115/320 (35%), Positives = 183/320 (57%)

Query:    18 KNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPS 77
             ++GG  S+E       W  +   IS VL+L                     +L++SG  S
Sbjct:    47 QDGGFVSAEKDSDFEYWMKLI--ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDAS 104

Query:    78 EKKQAAAIFPVVQK-QHQLLVTLLLCNAASMEALPIYLDKLFNQ-YVAIILSVTFVLFFG 135
             E+  A  +  ++++ +H +LVTLLL N    E LPI  D +    + A+++S   ++ FG
Sbjct:   105 ERVHARKVLKLLRRGKHWVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFG 164

Query:   136 EVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKA 194
             EVIPQA C RYGL++GA    +V  +M + +PIAYP   ILD  LG +++ +++++ LK 
Sbjct:   165 EVIPQATCVRYGLSIGAKLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKT 224

Query:   195 LVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGK 254
             LVT+H ++ G   +L  DE TII+  LDL EK AE  MTPIE  F+L ++  LD + +G+
Sbjct:   225 LVTLH-RDLGID-KLNQDEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGE 282

Query:   255 ILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI 313
             I+  G+SR+PV+  G P + IG+LL K+L+   P+ + PV   ++  +P+   +    D+
Sbjct:   283 IICAGYSRIPVHKPGFPHDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDL 342

Query:   314 LNEFQKGSSHMAAVVKAKGK 333
             LN  Q+G SHM  +  + G+
Sbjct:   343 LNYCQEGKSHMILISNSPGE 362

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q67XQ0	Y4424_ARATH	No assigned EC number	0.7761	0.9142	0.9493	yes	no
Q4V3C7	Y4423_ARATH	No assigned EC number	0.7389	0.9044	0.9373	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VIII.297.1	hypothetical protein (496 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00012610	hypothetical protein (232 aa)			•						0.442

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	3e-42
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	5e-32
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	3e-24
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	9e-23
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	4e-19
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	2e-11
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	6e-09
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	2e-05
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	9e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-04

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  155 bits (394), Expect = 3e-42
 Identities = 81/302 (26%), Positives = 131/302 (43%), Gaps = 22/302 (7%)

Query: 44  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCN 103
           +L+  +   S     L+SL    LE L   G     K+A A   ++++ ++ L T+ L  
Sbjct: 12  LLIALSAFFSAAEFALVSLRRSRLEQLAEEG----NKRAKAALKLIERLNRYLSTVQLGI 67

Query: 104 -----AASMEALPIYLDKLFNQYVAIILSVTFVLF--------FGEVIPQAICTRYGLAV 150
                       P     L     A+ LS              FGE++P++I  R    V
Sbjct: 68  TLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKV 127

Query: 151 GANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHS--QEAGKGG 207
                  +R    + YP+ + + +I + +L            L +         E+ + G
Sbjct: 128 ALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELELVSESAEEG 187

Query: 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267
            L  +E  +I+  LDL ++T  E MTP     +LD+   ++ E +  IL  GHSR+PVY 
Sbjct: 188 VLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYD 246

Query: 268 GNPKNIIGLLLVKSLLTVRPETE-TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAA 326
           G+  NIIG++ VK LL    + +      V +R    VP  + L D+L EF++  +HMA 
Sbjct: 247 GDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAI 306

Query: 327 VV 328
           VV
Sbjct: 307 VV 308

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  120 bits (304), Expect = 5e-32
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 38  YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLV 97
              I  +L+L +   S     L+SL    LE L   G     K A  +  ++    +LL 
Sbjct: 2   LLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEG----NKGARRLLKLLANPDRLLA 57

Query: 98  TLLLCNAASMEALPIYLDKLFNQY--------VAIILSVTFVLFFGEVIPQAICTRYGLA 149
           TLLL N  +   L         +         +A ++S   +L FGE++P+ +  R    
Sbjct: 58  TLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPER 117

Query: 150 VGANFVWLVRILMIICYPIAYPIGKILDWVLG-----HNEALFRRAQLKALVTIHSQEAG 204
           +       +R+LM + YP+ + + K+ + +L               +L+ALV    +E  
Sbjct: 118 IALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE-- 175

Query: 205 KGGELTHDE 213
             G +  +E
Sbjct: 176 --GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score =  104 bits (261), Expect = 3e-24
 Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 30/316 (9%)

Query: 44  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLL--- 100
           +L+L + ++SG  +   SL   +L   +   +  E+     +  ++ +  +LL T+L   
Sbjct: 3   LLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQI----VINLLDRPKKLLATILIAN 58

Query: 101 -LCNAASMEALPIYLDKLFN----QYVAIILS---VTF-VLFFGEVIPQAICTRYGLAVG 151
              N A +       D LF     + +  ++    VTF +L FGE++P+    R  L   
Sbjct: 59  NFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118

Query: 152 ANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALFRRAQLKALVTIHSQEAGKGGE 208
               + + IL  +  PI+ P+  I +++    G  ++     QL   + +  +E      
Sbjct: 119 KFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLSQALELTDEED----- 173

Query: 209 LTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG 268
            T +E  I+ G +       ++ M P    F+LD+ +    E + KI+  G+SR+PVY  
Sbjct: 174 TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKE 232

Query: 269 NPKNIIGLLLVKSLLTVRP--ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAA 326
              NI G+L +K LL   P    +       +R    VP +  L D+L +FQ+  +H+A 
Sbjct: 233 TIDNITGVLYIKDLL---PHLNKKNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAI 289

Query: 327 VVKAKGKSKTLPPMTD 342
           VV   G +  L  + D
Sbjct: 290 VVDEYGGTSGLVTLED 305

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score =  100 bits (250), Expect = 9e-23
 Identities = 105/412 (25%), Positives = 174/412 (42%), Gaps = 50/412 (12%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           W +   I  ++++ A   SG    L +L    L  L + G     + A  +  +++K  +
Sbjct: 3   WILIIAIIILIIISA-FFSGSETALTALNRYRLRHLAKQG----NRGAKRVEKLLEKPDR 57

Query: 95  LLVTLLLCN-----AASMEALPIYLDKLFNQYVAI-ILSVTFV-LFFGEVIPQAICTRYG 147
           L+ T+L+ N      AS  A  + +    +  VAI    +TFV L F EV+P+ I   Y 
Sbjct: 58  LIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYP 117

Query: 148 LAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQE----- 202
             V     +++ IL+ +  P+ + +  I   +L     L      +A+  + S+E     
Sbjct: 118 ERVALPSSFILAILVRLFGPLVWLLNAITRRLL----RLLGINLDQAVSQLSSKEELRTA 173

Query: 203 ---AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA-MGKILAR 258
              +G  G +   +  ++ G LDL   T  + M P      +D++    WE  + ++L  
Sbjct: 174 VNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDID--DPWEEIVRQLLHS 231

Query: 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDIL 314
            H+R+P+Y  +  NIIG+L V+ LL +  E     +   I R       VP   PL D L
Sbjct: 232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF-TKEDILRAADEPYFVPEGTPLSDQL 290

Query: 315 NEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE--- 371
             FQ+   H+A VV   G  + L  + D     L E  G   D T    +   E      
Sbjct: 291 VAFQRNKKHIALVVDEYGDIQGLVTLED----ILEEIVG---DFTDEHDTLAKEVIPQSD 343

Query: 372 -SVVVDVDRPLSSGSMNRLSSSQRSD---STTNGLI-YASEDI-EDGEVIGI 417
            S ++D    +    +NR       D    T NGL+    E+I E+G+ + I
Sbjct: 344 GSFIIDGSANVR--DLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRI 393

Length = 423

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 82.5 bits (205), Expect = 4e-19
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
            +LD +  L+ E +  I   GHSR PVY G+  NIIG++ VK LL    E E  +    +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 299 RR-IPRVPSDMPLYDILNEFQKGSSHMAAVV 328
            R    VP   PL D+L E +K  SHMA VV
Sbjct: 63  LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 201 QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH 260
           +++ +   +  D   ++ G +D+ +    + M P     +L  N  LD E +  I+   H
Sbjct: 42  RDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH 100

Query: 261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDILNE 316
           SR PV S +  ++ G+LL K LL   P   +      I+ + R    VP    +  +L E
Sbjct: 101 SRFPVISEDKDHVEGILLAKDLL---PFMRSDAEPFDIKELLRPAVVVPESKRVDRLLKE 157

Query: 317 FQKGSSHMAAVV 328
           F+   +HMA V+
Sbjct: 158 FRSQRNHMAIVI 169

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)

Query: 212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK 271
           D   ++ G +D+ ++   + M P     +L  N  LD E +  I+   HSR PV S +  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 272 NIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAV 327
           +I G+L+ K LL   P   +   A S+ ++ R    VP    +  +L EF+    HMA V
Sbjct: 112 HIEGILMAKDLL---PFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIV 168

Query: 328 V 328
           +
Sbjct: 169 I 169

Length = 292

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 47/325 (14%)

Query: 45  LVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCN- 103
           +V+ +   SG   G+M+L    L  + + G  S K+    +  +++K  +L+  +L+ N 
Sbjct: 1   MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKR----VEKLLRKPDRLISLVLIGNN 56

Query: 104 ----AASMEALPIYLDKLFNQYVAIILSV-TFV-LFFGEVIPQAICTRYGLAVGANFVWL 157
                AS     + +    +  VAI   V TFV L F EV+P+ I   Y   V     +L
Sbjct: 57  LVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFL 116

Query: 158 VRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDE-TTI 216
           +  L I+  P+         W+L     L  R     L+ I + +    G L+ +E  TI
Sbjct: 117 LAPLQILMMPLV--------WLLNTITRLLMR-----LMGIKT-DIVVSGALSKEELRTI 162

Query: 217 IS---------------GALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-H 260
           +                  LDL + T ++ M P      +D+N   DW+++ + L    H
Sbjct: 163 VHESRSQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDIND--DWKSILRQLTHSPH 220

Query: 261 SRVPVYSGNPKNIIGLLLVKS---LLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEF 317
            R+ +Y  +  + I +L V+    L+T + E        +   I  VP   PL   L +F
Sbjct: 221 GRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEGTPLSTQLVKF 280

Query: 318 QKGSSHMAAVVKAKGKSKTLPPMTD 342
           Q+    +  VV   G  + L  + D
Sbjct: 281 QRNKKKVGLVVDEYGDIQGLVTVED 305

Length = 413

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 410 EDGEVIGIITLEDVFEELLQEEIVDETDE 438
           E G V G++TLED+ EE++  EI DE DE
Sbjct: 310 EYGGVEGLVTLEDIIEEIVG-EIPDEHDE 337

Length = 429

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 250 EAMGKILARGHSRVPVYSGNPKNIIGLL----LVKSLLTVRPETETPVSAVSIRRIPRVP 305
           EA+  +L  G S +PV   +   ++G++    L+++L     +    V  V  R +  V 
Sbjct: 14  EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVS 72

Query: 306 SDMPLYDILNEFQKGSSHMAAVVKAKGK 333
            D  L +      +       VV  +G+
Sbjct: 73  PDTSLEEAAELMLEHGIRRLPVVDDEGR 100

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
KOG2118	498	consensus Predicted membrane protein, contains two	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	100.0
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.98
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.94
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.7
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.69
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.6
COG2524	294	Predicted transcriptional regulator, contains C-te	99.58
COG4109	432	Predicted transcriptional regulator containing CBS	99.51
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.5
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.42
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.37
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.35
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.34
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.34
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.33
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.33
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.33
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.33
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.33
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.32
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.32
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.3
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.3
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.3
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.3
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.29
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.29
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.27
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.27
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.27
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.27
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.26
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.26
COG3620	187	Predicted transcriptional regulator with C-termina	99.25
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.25
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.25
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.25
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.25
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.25
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.24
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.24
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.23
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.23
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.22
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.22
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.22
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.22
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.22
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.21
PRK11573	413	hypothetical protein; Provisional	99.21
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.21
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.21
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.2
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.2
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.2
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.2
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.2
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.2
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.19
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.19
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.19
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.19
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.19
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.18
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.18
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.18
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.17
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.17
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.17
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.17
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.17
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.16
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.16
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.16
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.16
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.16
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.15
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.15
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.14
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.12
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.1
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.1
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.09
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.08
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.06
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.06
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.05
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.03
COG0517	117	FOG: CBS domain [General function prediction only]	99.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.9
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.82
COG2905	610	Predicted signal-transduction protein containing c	98.8
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.71
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.53
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.52
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.44
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.26
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.21
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.19
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.09
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.04
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.58
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.57
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.54
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.47
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.43
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.4
COG2524	294	Predicted transcriptional regulator, contains C-te	97.4
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.37
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.36
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.33
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.32
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.31
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.22
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.18
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.16
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.15
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.12
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.07
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.07
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.07
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.06
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.06
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.05
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.02
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.02
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.01
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.01
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	96.99
COG3448	382	CBS-domain-containing membrane protein [Signal tra	96.98
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	96.98
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.97
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	96.97
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.96
COG0517	117	FOG: CBS domain [General function prediction only]	96.95
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	96.94
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	96.94
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	96.93
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	96.92
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	96.92
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.9
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	96.89
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	96.89
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	96.88
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	96.88
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.86
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	96.85
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	96.84
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	96.83
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.82
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	96.82
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.8
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	96.8
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.79
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	96.78
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.77
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	96.75
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.75
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.75
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	96.72
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.72
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	96.7
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.7
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.68
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.66
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	96.64
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	96.64
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	96.62
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.58
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	96.53
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.51
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	96.5
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.48
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.48
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	96.46
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.45
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.31
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.29
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.28
COG3620	187	Predicted transcriptional regulator with C-termina	96.22
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.18
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.16
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.11
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.08
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.06
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.05
COG2905	610	Predicted signal-transduction protein containing c	95.92
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.91
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	95.67
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	95.55
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	95.53
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	95.52
COG4109	432	Predicted transcriptional regulator containing CBS	94.11
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	93.51
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	90.73
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	90.43
PF03471	81	CorC_HlyC: Transporter associated domain; InterPro	86.64
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	86.55
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	86.28

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-66  Score=515.36  Aligned_cols=366  Identities=23%  Similarity=0.339  Sum_probs=322.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 010325           35 WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL  114 (513)
Q Consensus        35 ~~~~~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~  114 (513)
                      |. +++++++|+++||||||+|+|+++++|.|++.++++|+    |+|+++.+++++|++++.|+|+||+++|++.+.+.
T Consensus         3 ~~-l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~----~~Akrv~kLL~k~drlig~iLIGNNLvNilasala   77 (423)
T COG4536           3 WI-LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGN----RGAKRVEKLLEKPDRLIGTILIGNNLVNILASALA   77 (423)
T ss_pred             ch-HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccc----hhhHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence            44 44667789999999999999999999999999999999    47899999999999999999999999998766543


Q ss_pred             ----HHHHHH---HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCC-
Q 010325          115 ----DKLFNQ---YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW---VLGHN-  183 (513)
Q Consensus       115 ----~~~~~~---~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~---llg~~-  183 (513)
                          -++||.   .+|+.++|+++++|+|++||++|..||++++...+.++.++..+|+|++|.++++.+.   ++|.+ 
T Consensus        78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~  157 (423)
T COG4536          78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL  157 (423)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence                344543   4778889999999999999999999999999999999999999999999999988775   46754 


Q ss_pred             ----cccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          184 ----EALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       184 ----~~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                          +...+.||++.+++    +++..|...+++++|+.+++++++.+|.|||+||+++..++.|++.+ +.++.+..+.
T Consensus       158 ~~~~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~  232 (423)
T COG4536         158 DQAVSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP  232 (423)
T ss_pred             ccccccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence                25689999999998    44555777778999999999999999999999999999999999998 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEEhhhhhccCCCCc-ccccccc--cccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCccc
Q 010325          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (513)
Q Consensus       260 ~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-~~v~dim--~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~G  336 (513)
                      |+|+|+|.++.|+++|++|.||++++..+.+ ..-.+++  ..++.|||+++++.+.|..|++++.|+++||||||.+.|
T Consensus       233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~G  312 (423)
T COG4536         233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQG  312 (423)
T ss_pred             CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEe
Confidence            9999999999999999999999998776543 2222322  478899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCCCc
Q 010325          337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDGE  413 (513)
Q Consensus       337 iv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~g~  413 (513)
                      +|  |.|||+|||+|++.+.. +.-...+.+..++++.+|+..+++++|+.++|++|.+ +.|++|+++ ..|.||+-.
T Consensus       313 LV--TLEDIlEEIVGdftde~-d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~  388 (423)
T COG4536         313 LV--TLEDILEEIVGDFTDEH-DTLAKEVIPQSDGSFIIDGSANVRDLNRALDWNLPDEDARTINGLVLEELEEIPEEG  388 (423)
T ss_pred             ee--eHHHHHHHHhccccccC-cccchhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCC
Confidence            99  99999999999999543 2334468889999999999999999999999999987 999999988 777777643

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=6.9e-63  Score=521.79  Aligned_cols=356  Identities=20%  Similarity=0.289  Sum_probs=308.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHH-
Q 010325           46 VLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLFNQ-  120 (513)
Q Consensus        46 lllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~----~~~~~~-  120 (513)
                      +++||||||+|+|++|+++.+|+.++++|+    ++|+++++++++|+++|+|+++||+++|.+.+.+.    ..+++. 
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~----~~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGN----RSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCC----hhHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            468999999999999999999999999998    46889999999999999999999999987665432    233332 


Q ss_pred             --HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCc-----ccccHH
Q 010325          121 --YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNE-----ALFRRA  190 (513)
Q Consensus       121 --~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~l---lg~~~-----~~~s~e  190 (513)
                        +++++++|+++++|||++||++|.+||++++.++++++++++++|+|++|+++++.+.+   +|.+.     ..++++
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence              35666788899999999999999999999999999999999999999999998887754   56432     368999


Q ss_pred             HHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC
Q 010325          191 QLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP  270 (513)
Q Consensus       191 eL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~  270 (513)
                      ||+.+++.+    .  +.++++|++|++++++|++++|+||||||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus       158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            999999732    2  259999999999999999999999999999999999999998 999999999999999999989


Q ss_pred             CcEEEEEEhhhhhccCCCC-c---ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCc
Q 010325          271 KNIIGLLLVKSLLTVRPET-E---TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (513)
Q Consensus       271 d~ivGiV~~kDLl~~~~~~-~---~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dil  346 (513)
                      |+++|++|.||++....+. .   ..+.++ .+++.+||+++++.++|+.|++++.|+|+|+||||+++|++  |.+|++
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV--TleDil  307 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV--TVEDIL  307 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe--eHHHHH
Confidence            9999999999998643221 1   123343 68899999999999999999999999999999999999999  999999


Q ss_pred             cccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cccc
Q 010325          347 KLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GEVI  415 (513)
Q Consensus       347 e~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~li  415 (513)
                      |+++|++.++..+.......+..++.|.+|+..+++++++.++..++.+ +.|++||+. ..+++|. |+.+
T Consensus       308 EeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~  379 (413)
T PRK11573        308 EEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRV  379 (413)
T ss_pred             HHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEE
Confidence            9999999988643222345667788999999999999999999999876 899999999 8888865 5443

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=2.4e-62  Score=517.57  Aligned_cols=358  Identities=23%  Similarity=0.370  Sum_probs=310.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 010325           43 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLF  118 (513)
Q Consensus        43 ~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~----~~~~  118 (513)
                      ++|+++||||||+|+|++|+++.+++.++++|+    ++|+++++++++|+++++|+++||+++|.+++.+.    ..+|
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~----~~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNS----KKEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999987    46889999999999999999999999988766543    3334


Q ss_pred             HH--------HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCcccc
Q 010325          119 NQ--------YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALF  187 (513)
Q Consensus       119 ~~--------~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~l---lg~~~~~~  187 (513)
                      +.        .++++++|+++++|||++||++|.+||++++.++++++++++++|+|++|+++++++++   +|.+...+
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~  157 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI  157 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            31        13455667788999999999999999999999999999999999999999999988765   56555568


Q ss_pred             cHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeee
Q 010325          188 RRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS  267 (513)
Q Consensus       188 s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~  267 (513)
                      +++||+.+++.+    .++| ++++|++|++++++|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||+
T Consensus       158 t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~  231 (408)
T TIGR03520       158 SVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK  231 (408)
T ss_pred             CHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence            999999999743    3345 6899999999999999999999999999999999999998 999999999999999999


Q ss_pred             CCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcc
Q 010325          268 GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (513)
Q Consensus       268 ~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile  347 (513)
                      ++.|+++|+|+.||++....++..++.++ ++++.+||+++++.++++.|++++.|+|+|+||||+++||+  |.+|++|
T Consensus       232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV--T~eDile  308 (408)
T TIGR03520       232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV--TLEDIIE  308 (408)
T ss_pred             CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE--EHHHHHH
Confidence            88899999999999986543333456676 57889999999999999999999999999999999999999  9999999


Q ss_pred             ccccCCCCCCCCccccccccccCCceEecCCCCCcccccccccccc------CCCCccccccc-cccccCC-Ccc
Q 010325          348 LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ------RSDSTTNGLIY-ASEDIED-GEV  414 (513)
Q Consensus       348 ~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~------~~~~t~~gl~~-~~~~~e~-g~l  414 (513)
                      +++|++.++... ....+.+..++.|.+++..+++++++.++.+++      .++.|++|++. ..+++|. |+.
T Consensus       309 eivgei~de~d~-~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~  382 (408)
T TIGR03520       309 EIVGDISDEFDD-EDLIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEK  382 (408)
T ss_pred             HHhCCCCCcCCc-CccceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCE
Confidence            999999987632 233466678889999999999999999998843      24889999998 7788865 443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=3.1e-57  Score=482.15  Aligned_cols=362  Identities=26%  Similarity=0.343  Sum_probs=310.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 010325           38 YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDK-  116 (513)
Q Consensus        38 ~~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~~~-  116 (513)
                      .++++++|+++|||||++|+|++|++|.|+++++++|+    ++|..++++.++++.+++++++|+++++...+.+... 
T Consensus         6 ~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~----~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~   81 (429)
T COG1253           6 TLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGN----KRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPA   81 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccC----HhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667779999999999999999999999999999987    4788999999999999999999999987665433222 


Q ss_pred             ---HHHHHH-----H----HHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---C
Q 010325          117 ---LFNQYV-----A----IILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---G  181 (513)
Q Consensus       117 ---~~~~~~-----a----~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~ll---g  181 (513)
                         .+..+.     +    +++.|+++++|||++||++|.+||++++.++++++++++++|+|++|++++++++++   |
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~  161 (429)
T COG1253          82 LAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFG  161 (429)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               222211     1    456788899999999999999999999999999999999999999999999998764   4


Q ss_pred             CC---c--ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHH
Q 010325          182 HN---E--ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL  256 (513)
Q Consensus       182 ~~---~--~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~  256 (513)
                      .+   +  ...+.++++ +++    ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~  235 (429)
T COG1253         162 VEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL  235 (429)
T ss_pred             CCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHH
Confidence            33   2  345677777 775    56678999999999999999999999999999999999999999998 9999999


Q ss_pred             hcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc-cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 010325          257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK  335 (513)
Q Consensus       257 ~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~-~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~  335 (513)
                      +++|||+|||+++.|+++|++|.|||+.....++. .......+++++||+++++.++|++||+.+.|||+|+||||++.
T Consensus       236 ~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~  315 (429)
T COG1253         236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVE  315 (429)
T ss_pred             hCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeE
Confidence            99999999999888999999999999987654432 22222356999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC--CCccccccc-cccccCC
Q 010325          336 TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS--DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       336 Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~--~~t~~gl~~-~~~~~e~  411 (513)
                      |++  |.+|++|+|+|++.++.....+..+.+..++.|.+++..+++++++.++..++.+  +.|++|++. ...+++.
T Consensus       316 GlV--TleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~  392 (429)
T COG1253         316 GLV--TLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPK  392 (429)
T ss_pred             EEe--EHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCC
Confidence            999  9999999999999988754344455555555599999999999999999987554  999999999 7777773

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=100.00  E-value=6.7e-38  Score=336.13  Aligned_cols=427  Identities=46%  Similarity=0.611  Sum_probs=342.7

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHH-HHHHHHHHHHhhhHHHHHHHHHHH
Q 010325           26 EGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKK-QAAAIFPVVQKQHQLLVTLLLCNA  104 (513)
Q Consensus        26 ~~~~~~s~~~~~~~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk-~a~~il~l~~~~~~ll~Tll~~n~  104 (513)
                      ..+|+...+|++++.++++|++++++|||.++++++++-..++.+.+.|...+++ .++++....++.+++|+|+++||.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~   82 (498)
T KOG2118|consen    3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS   82 (498)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence            4577888888888888888999999999999999999999999999999887765 788899999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 010325          105 ASMEA-LPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHN  183 (513)
Q Consensus       105 ~~~~~-~~~~~~~~~~~~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~llg~~  183 (513)
                      +++.+ ++.++....+.|.++.++++.+++|||++||++|.+|+..+++.+.+++++++++++|+.||++++ ++.+|..
T Consensus        83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~  161 (498)
T KOG2118|consen   83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN  161 (498)
T ss_pred             hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence            99999 888877777778899999999999999999999999999999999999999999999999999998 8888987


Q ss_pred             c-ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCce
Q 010325          184 E-ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR  262 (513)
Q Consensus       184 ~-~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr  262 (513)
                      . ..+.+.+++.++..+..|+.+ |.+..+|..++.+++++.++.++++|||..+++.++.+..+.++.+..+.++||||
T Consensus       162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr  240 (498)
T KOG2118|consen  162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR  240 (498)
T ss_pred             cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence            6 567789999999999888776 89999999999999999999999999999999999999999988888999999999


Q ss_pred             eeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          263 VPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       263 ~PV~~~~~d~ivGiV~~kDLl~~~----~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                      +|||+.+..+.+|.+..+.++...    .....++.+.+.++.+.+|+++++.+.++.|++.+.|++.|+. +....+++
T Consensus       241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~  319 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL  319 (498)
T ss_pred             eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE
Confidence            999998878888888777777655    3345678888889999999999999999999999999999987 67778888


Q ss_pred             CCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCcc--ccc--------cccccccCCCCccccccc-ccc
Q 010325          339 PMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSS--GSM--------NRLSSSQRSDSTTNGLIY-ASE  407 (513)
Q Consensus       339 ~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~--~~~--------~~~~~l~~~~~t~~gl~~-~~~  407 (513)
                        |.+|+ +++.++..++....    ..+...+.++.........  ...        ...-..+..+..+.++.. ..+
T Consensus       320 --~l~~~-~~~~~ev~de~d~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
T KOG2118|consen  320 --TLEDL-EEVVKEVEDEEDKE----EIKFETGIFTLRGIGDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSRKSAFE  392 (498)
T ss_pred             --eccch-hhhcceeccccccc----cchhcccchhhcccccccccccchhhhhcccccccccCCCCCcccccccccccc
Confidence              99999 77776666654222    2222222222222211111  100        111111212222222221 111


Q ss_pred             cc-CCC-ccceecchHHHHHHHhcCccCCCCchhhhhHHHHHHHhHHHhhhhccCCCcc
Q 010325          408 DI-EDG-EVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSR  464 (513)
Q Consensus       408 ~~-e~g-~liGIITleDv~eel~~~ei~de~d~~~~~~~~~~~~~~~~~~~~~r~~~~~  464 (513)
                      +. +.+ .-.|+.|.+|++++..+++|.++.+.+...+++.+++..+  +.+++.|..+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~  449 (498)
T KOG2118|consen  393 DLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLA--SLMESLPQSP  449 (498)
T ss_pred             ccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhh--hhhccCCCCC
Confidence            12 222 2467799999999999999999999999888888876432  3444444443

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=100.00  E-value=3.5e-33  Score=283.05  Aligned_cols=225  Identities=21%  Similarity=0.271  Sum_probs=196.2

Q ss_pred             HHHhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHH
Q 010325          177 DWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL  256 (513)
Q Consensus       177 ~~llg~~~~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~  256 (513)
                      ..++|.+.  .+++||+.+++    ++.+.|.++++|+++++++|+|++++|+++|+||.++++++.+++++ ++++.+.
T Consensus        24 ~~~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~   96 (292)
T PRK15094         24 SQLFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVII   96 (292)
T ss_pred             HHHcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHH
Confidence            33456443  58999999997    45567999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCc
Q 010325          257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKS  334 (513)
Q Consensus       257 ~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~  334 (513)
                      +++|+|+|||+++.|+++|+|+.||++......  ...+.++ ++++++|++++++.++++.|++++.|++||+||||++
T Consensus        97 ~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~v  175 (292)
T PRK15094         97 ESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV  175 (292)
T ss_pred             hcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCE
Confidence            999999999987778999999999998543221  2346776 5777899999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325          335 KTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       335 ~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~  411 (513)
                      +|++  |.+|++++++|++.++........+.+...+.|.+++.++++++++.++..++.. +.|++||++ ...+++.
T Consensus       176 iGiV--TleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~  252 (292)
T PRK15094        176 SGLV--TIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPA  252 (292)
T ss_pred             EEEe--EHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCC
Confidence            9999  9999999999999987643333357778899999999999999999999998865 899999998 7777765

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.98  E-value=1.1e-33  Score=267.49  Aligned_cols=222  Identities=20%  Similarity=0.251  Sum_probs=198.9

Q ss_pred             HHHHHHHhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHH
Q 010325          173 GKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAM  252 (513)
Q Consensus       173 ~~~~~~llg~~~~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal  252 (513)
                      .++++.+|..  ..-+++||..++.    .+++.+.++++-..|++++++..+++|+|||+||++++++..+.+++ +.+
T Consensus        20 e~L~~~~f~g--Epknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l   92 (293)
T COG4535          20 ERLLSQLFHG--EPKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECL   92 (293)
T ss_pred             HHHHHHHhcC--CCcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHH
Confidence            3444444432  3446899999997    56667899999999999999999999999999999999999999999 999


Q ss_pred             HHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEec
Q 010325          253 GKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (513)
Q Consensus       253 ~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~--~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE  330 (513)
                      ..+.+++||||||+.++.|++.||++.|||+.....+.  ..+.++ .||+++|||+..+..+|+.|+.++.|||+||||
T Consensus        93 ~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDE  171 (293)
T COG4535          93 DVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE  171 (293)
T ss_pred             HHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEec
Confidence            99999999999999999999999999999998765432  456664 899999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc
Q 010325          331 KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY  404 (513)
Q Consensus       331 ~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~  404 (513)
                      ||++.|+|  |.+||+|.|+|++.++...+.+..+.+..++.|.|+.-+++.+.|..++..+..+ ..|+|||+.
T Consensus       172 fGgVsGLV--TIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTIGGLVm  244 (293)
T COG4535         172 FGGVSGLV--TIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTIGGLVM  244 (293)
T ss_pred             cCCeeeeE--EHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhhhHHHH
Confidence            99999999  9999999999999998876666679999999999999999999999999988877 999999886

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.94  E-value=1.2e-25  Score=212.42  Aligned_cols=167  Identities=27%  Similarity=0.482  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 010325           39 AGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLD---  115 (513)
Q Consensus        39 ~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~~---  115 (513)
                      +++++++++++||||++|+|++++++.+++.++++|+    ++++++.++++||+++++|++++|++++.+.+.+..   
T Consensus         3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~   78 (183)
T PF01595_consen    3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA   78 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778899999999999999999999999999988    478899999999999999999999998877664433   


Q ss_pred             -HHHHH----HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC---c
Q 010325          116 -KLFNQ----YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GHN---E  184 (513)
Q Consensus       116 -~~~~~----~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~ll---g~~---~  184 (513)
                       .+++.    +++++++++++++|||++||++|.+||++++.+.++++++++++++|++|++.++.++++   |.+   +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~  158 (183)
T PF01595_consen   79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED  158 (183)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence             22332    356667788889999999999999999999999999999999999999999999888764   433   2


Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCChhH
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELTHDE  213 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~~~E  213 (513)
                      ..+++||++.+++    +++++|.++++|
T Consensus       159 ~~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  159 PAVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            5789999999998    556679999876

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.70  E-value=1.1e-15  Score=149.91  Aligned_cols=136  Identities=15%  Similarity=0.294  Sum_probs=116.1

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhc-------CcccccccccccCccEEEEeCCCCccHHHHHHHHhc
Q 010325          186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALD-------LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR  258 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~-------l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~  258 (513)
                      .|+.+|+.+.++    +.+|.-+|+.++.+.+.+-.+       +.+.++.|||++  ++++++.+++++ ++.+++.++
T Consensus       202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            588999999886    445556788877665544433       478999999997  999999999999 999999999


Q ss_pred             CCceeeeeeCCCCcEEEEEEhhhhhccCCC---------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       259 ~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++..+||.|++ .+++|+|+.+||+.....         ....++.+|..++.+|.++++..+++..|.+.+.|..||+|
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld  353 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD  353 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence            99999999876 799999999999862211         24578899888999999999999999999999999999999

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.69  E-value=1e-16  Score=172.33  Aligned_cols=134  Identities=16%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             cccHHHHHHHHHHhhhhhccC------CCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHh--
Q 010325          186 LFRRAQLKALVTIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA--  257 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~~~------g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~--  257 (513)
                      .++.+|+..+++.    ..++      +.++++|+++++++++|++.+|+++|++  ++++++.++++. ++++.+++  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            4677888888862    2222      4799999999999999999999999996  899999999999 99999985  


Q ss_pred             -cCCc--eeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          258 -RGHS--RVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       258 -~~~s--r~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                       .+++  .++|.++ .++++|+|+.+|++...  ++.+++++|.++++++++++++.++++.|++++.+.+||||
T Consensus       162 ~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD  233 (449)
T TIGR00400       162 KTKEDIYTLYVTNE-SKHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD  233 (449)
T ss_pred             CCccceeEEEEECC-CCeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence             2333  4455554 48999999999998653  34679999888888999999999999999999999999999

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.60  E-value=5.6e-15  Score=158.71  Aligned_cols=150  Identities=15%  Similarity=0.250  Sum_probs=129.8

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCh-----hHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~~-----~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                      ...|++|+..++..    .+..|.|++     +|++++++++++++.     |++  ++++++++.++. ++++.+.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            56799999999863    334678884     899999999988765     554  778999999999 9999999999


Q ss_pred             CceeeeeeCCC--CcEEEEEEhhhhhccCCCCccccccccc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCccc
Q 010325          260 HSRVPVYSGNP--KNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (513)
Q Consensus       260 ~sr~PV~~~~~--d~ivGiV~~kDLl~~~~~~~~~v~dim~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~G  336 (513)
                      ++++||++++.  ++++|+|+.+|++... ....++.++|. .+++++++++++.++++.|++++.+.+||+|++|.+.|
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG  189 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG  189 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            99999998754  6999999999998543 23467889877 48999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccc
Q 010325          337 LPPMTDGKKPKLN  349 (513)
Q Consensus       337 iv~~T~~dile~i  349 (513)
                      ++  |.+|+++++
T Consensus       190 iV--T~~DIl~~~  200 (450)
T TIGR01302       190 LI--TMKDIVKRR  200 (450)
T ss_pred             EE--EhHHhhhcc
Confidence            99  999999886

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.58  E-value=3e-15  Score=144.53  Aligned_cols=108  Identities=17%  Similarity=0.298  Sum_probs=99.5

Q ss_pred             HHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--Cccccc
Q 010325          217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVS  294 (513)
Q Consensus       217 I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~  294 (513)
                      +.++....+.+|+++|++  +++++.+|.|+. |+.+.+.++++...||+++  |+++|+++..|+..+..+  .+.+|+
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~  237 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS  237 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence            456677899999999997  999999999998 9999999999999999986  599999999999886655  347899


Q ss_pred             ccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       295 dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++|.+.+++|.+|+.+.||++.|.+++...++|+|
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d  272 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD  272 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence            99999999999999999999999999999999999

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.51  E-value=5.2e-14  Score=141.13  Aligned_cols=103  Identities=21%  Similarity=0.319  Sum_probs=95.4

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~  302 (513)
                      -+=++|.|||+|..+..++..+++++ +..++..++||+||||++.. .+++|+|+.||+....  +.+++..+|.+.+.
T Consensus       185 kdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~--~~t~ieKVMtknp~  260 (432)
T COG4109         185 KDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKK--PSTTIEKVMTKNPI  260 (432)
T ss_pred             hheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCC--CCccHHHHhccCCe
Confidence            35578999999999999999999999 99999999999999999875 7899999999998763  46788899999999


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +|.+.+++..+.+.|-..+..|.||+|
T Consensus       261 tv~~~tsVAsvaq~MiwE~iem~PVv~  287 (432)
T COG4109         261 TVRAKTSVASVAQMMIWEGIEMLPVVD  287 (432)
T ss_pred             eecccchHHHHHHHHHhccceeeeEEc
Confidence            999999999999999999999999999

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.50  E-value=3.8e-14  Score=150.59  Aligned_cols=116  Identities=22%  Similarity=0.275  Sum_probs=103.4

Q ss_pred             CCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEhhhh
Q 010325          208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH-----SRVPVYSGNPKNIIGLLLVKSL  282 (513)
Q Consensus       208 ~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~-----sr~PV~~~~~d~ivGiV~~kDL  282 (513)
                      .++++|++.++..+.+.+.+++.+|+.  +++++..+.|++ +++.++++.+.     ..+.|+|.+ ++++|+++.++|
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L  189 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL  189 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence            588999999999999999999999996  999999999999 99999996543     344555554 789999999999


Q ss_pred             hccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       283 l~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +..  +++.+++++|.+.+++|+.+++.+++.+.|++|+.-.+||||
T Consensus       190 l~a--~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd  234 (451)
T COG2239         190 LTA--EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD  234 (451)
T ss_pred             hcC--CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence            976  346789999988899999999999999999999999999999

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.42  E-value=1.7e-12  Score=140.95  Aligned_cols=150  Identities=20%  Similarity=0.281  Sum_probs=127.5

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~-----~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                      ..++++|+...+.    +.+.-|.|.     +++.++++++++++     ++|.+  ++++++.+.++. ++++.+.+++
T Consensus        50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~~~-----dim~~--~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKRSE-----SGVVT--DPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhhhh-----hcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence            4678999999986    344456677     47889999998754     56764  888999999999 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       260 ~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                      ++++||++++ ++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|.+.|++
T Consensus       118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI  195 (486)
T PRK05567        118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI  195 (486)
T ss_pred             CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9999999864 8999999999997543 23467888887 7889999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccc
Q 010325          339 PMTDGKKPKLNE  350 (513)
Q Consensus       339 ~~T~~dile~i~  350 (513)
                        |.+|+++.+.
T Consensus       196 --T~~DLl~~~~  205 (486)
T PRK05567        196 --TVKDIEKAEE  205 (486)
T ss_pred             --EhHHhhhhhh
Confidence              8888887753

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.37  E-value=4.3e-12  Score=109.38  Aligned_cols=91  Identities=27%  Similarity=0.390  Sum_probs=79.2

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccccceeeCCCCCHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL  314 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~~~v~dim~~~~~~Vpe~~~l~d~L  314 (513)
                      ++++++.+.++. ++++.|.+++++++||++++ ++++|+++.+|+.....+.  ..++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence            467789999998 99999999999999999864 7999999999998643221  2468888888888999999999999


Q ss_pred             HHHHhCCceEEEEEe
Q 010325          315 NEFQKGSSHMAAVVK  329 (513)
Q Consensus       315 ~~m~~~~~~~a~VVD  329 (513)
                      +.|.+++.+.+||+|
T Consensus        80 ~~m~~~~~~~lpVvd   94 (111)
T cd04603          80 RIFRETEPPVVAVVD   94 (111)
T ss_pred             HHHHHcCCCeEEEEc
Confidence            999999999999999

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=5.4e-12  Score=110.05  Aligned_cols=91  Identities=15%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-----ccccc------cccccceeeC
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TPVSA------VSIRRIPRVP  305 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-----~~v~d------im~~~~~~Vp  305 (513)
                      ++.+++++.++. ++++.+.+++++++||++++ ++++|+++.+|++....++.     ..+.+      +|..++.+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999998 99999999999999999864 89999999999986432211     11222      2334568999


Q ss_pred             CCCCHHHHHHHHHhCCceEEEEEe
Q 010325          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       306 e~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~l~~~~~~m~~~~~~~l~Vvd  103 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVD  103 (120)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEEC
Confidence            999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=8.3e-12  Score=105.98  Aligned_cols=79  Identities=14%  Similarity=0.348  Sum_probs=71.2

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++++++++.++. ++.+.|.+++++.+||++++.++++|+++.+|+.....             +.++.+++++.++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence            678899999998 99999999999999999864478999999999985311             6789999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++.+.+||+|
T Consensus        68 m~~~~~~~lpVvd   80 (98)
T cd04618          68 LLKNKIHRLPVID   80 (98)
T ss_pred             HHHCCCCEeeEEE
Confidence            9999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.34  E-value=5.1e-12  Score=136.25  Aligned_cols=99  Identities=15%  Similarity=0.206  Sum_probs=88.8

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceee
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~V  304 (513)
                      ..+++++|++  ++++++++.++. ++.+.|.+++++.+||++++ ++++|+|+.+|+....  ...++.++|.++++++
T Consensus        88 ~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~itV  161 (479)
T PRK07807         88 WVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVTL  161 (479)
T ss_pred             hccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceEE
Confidence            4567899985  888999999999 99999999999999999864 7899999999997542  2367999999999999


Q ss_pred             CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          305 PSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       305 pe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++.++++.|.+++.+.+||+|
T Consensus       162 ~~d~sL~eAl~lM~~~~i~~LPVVD  186 (479)
T PRK07807        162 PAGTDPREAFDLLEAARVKLAPVVD  186 (479)
T ss_pred             CCCCcHHHHHHHHHhcCCCEEEEEc
Confidence            9999999999999999999999999

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.33  E-value=6.2e-12  Score=107.40  Aligned_cols=91  Identities=12%  Similarity=0.258  Sum_probs=79.7

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++.+++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++........++.++|.+++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            567789999998 99999999999999999865 8999999999998654333345778877889999999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~Vv~   93 (110)
T cd04605          81 MERHNISALPVVD   93 (110)
T ss_pred             HHHhCCCEEeEEC
Confidence            9999999999999

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=7.7e-12  Score=106.89  Aligned_cols=91  Identities=15%  Similarity=0.243  Sum_probs=78.7

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----cccccccccccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSIRRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----~~~v~dim~~~~~~Vpe~~~l~  311 (513)
                      ++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|++......     ..++.++|.+++.++++++++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence            567789999998 99999999999999999865 7999999999998643221     3467888778889999999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|.+.+.+.+||+|
T Consensus        80 ~~l~~~~~~~~~~~~Vv~   97 (113)
T cd04623          80 EAMALMTERRFRHLPVVD   97 (113)
T ss_pred             HHHHHHHHcCCCEeEEEe
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.33  E-value=6.8e-12  Score=107.22  Aligned_cols=90  Identities=19%  Similarity=0.229  Sum_probs=80.1

Q ss_pred             ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHH
Q 010325          236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (513)
Q Consensus       236 ~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~  315 (513)
                      +++.+++.+++++ ++.+.+.+++++++||++++ ++++|+++.+|++...  .+.++.++|..++.++++++++.++++
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~   77 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAH   77 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHH
Confidence            4678899999998 99999999999999999864 8899999999998642  345788888788899999999999999


Q ss_pred             HHHhCCceEEEEEe
Q 010325          316 EFQKGSSHMAAVVK  329 (513)
Q Consensus       316 ~m~~~~~~~a~VVD  329 (513)
                      .|.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~~Vv~   91 (108)
T cd04596          78 MMIWEGIEMLPVVD   91 (108)
T ss_pred             HHHHcCCCeeeEEc
Confidence            99999999999999

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=6e-12  Score=107.82  Aligned_cols=91  Identities=14%  Similarity=0.203  Sum_probs=79.1

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---cccccccccccceeeCCCCCHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---ETPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~---~~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++......   +.++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            566789999998 99999999999999999764 7899999999998643321   246778888888999999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (111)
T cd04626          80 LDIMREKQIGRLPVVD   95 (111)
T ss_pred             HHHHHHcCCCeeeEeE
Confidence            9999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.33  E-value=4.2e-12  Score=131.05  Aligned_cols=104  Identities=16%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Ccccccccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR  299 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~  299 (513)
                      ...+|+++|++.+++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+......    .+.++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            6678999999655889999999999 99999999888777877754 799999999998754322    23579999989


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++.+++++.++++.|.+++.+.+||+|
T Consensus       278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~  307 (326)
T PRK10892        278 GGIRVRPGILAVDALNLMQSRHITSVLVAD  307 (326)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence            999999999999999999999999999998

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.32  E-value=1.1e-11  Score=131.72  Aligned_cols=128  Identities=18%  Similarity=0.155  Sum_probs=101.0

Q ss_pred             cccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecC-CCcccCCCCCCCCCccccccCCCCCCCCccccccc
Q 010325          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (513)
Q Consensus       290 ~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~-G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~  366 (513)
                      +.+++++|..  ++.+++.++++.++++.|.+++....||+++. +.++|++  +.+|++....+    ..     ....
T Consensus       190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv--~~kDll~~~~~----~~-----~~l~  258 (408)
T TIGR03520       190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVL--YIKDLLPHLNK----KN-----FDWQ  258 (408)
T ss_pred             CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEE--EHHHHHhHhcc----CC-----CCHH
Confidence            4678899874  68899999999999999999999999999874 7899999  88898754332    11     1123


Q ss_pred             cccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (513)
Q Consensus       367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~  438 (513)
                      +...+.++|+.++++.++-+.|+.........+     .    |+|+++||||+|||+|+++| ||.||+|.
T Consensus       259 ~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVv-----D----E~G~~~GiVT~eDileeivg-ei~de~d~  320 (408)
T TIGR03520       259 SLLREPYFVPENKKLDDLLRDFQEKKNHLAIVV-----D----EYGGTSGLVTLEDIIEEIVG-DISDEFDD  320 (408)
T ss_pred             HHcCCCeEeCCCCcHHHHHHHHHhcCceEEEEE-----c----CCCCEEEEEEHHHHHHHHhC-CCCCcCCc
Confidence            334568999999999998888876544332222     2    78999999999999999997 99999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=9.8e-12  Score=107.28  Aligned_cols=92  Identities=16%  Similarity=0.219  Sum_probs=79.1

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC-----CCCcccccccccccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR-----PETETPVSAVSIRRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~-----~~~~~~v~dim~~~~~~Vpe~~~l~  311 (513)
                      ++.+++.+.++. ++++.+.+++++.+||++++.++++|+++.+|++...     .....++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            677899999998 9999999999999999986437899999999998631     1123467888878889999999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~Vvd   98 (114)
T cd04630          81 YCARLMERTNIRRAPVVE   98 (114)
T ss_pred             HHHHHHHHcCCCEeeEee
Confidence            999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.30  E-value=1.1e-11  Score=105.96  Aligned_cols=92  Identities=41%  Similarity=0.624  Sum_probs=77.8

Q ss_pred             ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccccceeeCCCCCHHHH
Q 010325          236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       236 ~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~--~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      +++++++.+.++. ++.+.|.+.+++.+||++++.++++|+++.+|++.....+.  .++.++ ++++.++++++++.++
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~   78 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL   78 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence            3678899999998 99999999999999999764378999999999987543221  345564 5778899999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~Vv~   94 (111)
T cd04590          79 LEEMRKERSHMAIVVD   94 (111)
T ss_pred             HHHHHhcCCcEEEEEE
Confidence            9999999999999999

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.30  E-value=1.4e-11  Score=107.60  Aligned_cols=91  Identities=19%  Similarity=0.370  Sum_probs=79.2

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--------------cccccccccccce
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP  302 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--------------~~~v~dim~~~~~  302 (513)
                      ++.+++.+.++. ++.+.+.+.+++++||++++ ++++|+|+.+|++......              ..++.++|.+++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            677899999998 99999999999999999865 8999999999997543221              2357788888899


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~  107 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVD  107 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence            999999999999999999999999999

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=1.4e-11  Score=106.46  Aligned_cols=91  Identities=20%  Similarity=0.210  Sum_probs=79.3

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCcccccccccccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-----~~~~~v~dim~~~~~~Vpe~~~l~  311 (513)
                      ++..++.++++. ++.+.+.+.++..+||++++ ++++|+++.+|++....     ....++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   79 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH   79 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence            466788999998 99999999999999999865 78999999999886432     123568888888899999999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|.+++.+.+||+|
T Consensus        80 ~a~~~m~~~~~~~lpVvd   97 (114)
T cd04619          80 DVWQVMKQRGLKNIPVVD   97 (114)
T ss_pred             HHHHHHHHcCCCeEEEEC
Confidence            999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.30  E-value=9.3e-12  Score=126.32  Aligned_cols=168  Identities=18%  Similarity=0.219  Sum_probs=126.3

Q ss_pred             HHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (513)
Q Consensus       250 eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~V  327 (513)
                      |-++-+.+..++..|++..+.+.+.|++..++         ..|+|+|+.  .+..+..+.+.+++.+++........||
T Consensus       168 EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~---------~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRipl  238 (423)
T COG4536         168 EELRTAVNESGSEGSVNKIDRDMLLGVLDLEN---------LTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPL  238 (423)
T ss_pred             HHHHHHHHHhhcccccccccHHHHhccccccc---------ceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceee
Confidence            55667777788899998866788999987754         457888863  4567999999999999988776555555


Q ss_pred             E-ecCCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccc
Q 010325          328 V-KAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS  406 (513)
Q Consensus       328 V-DE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~  406 (513)
                      . |.-+.++|++  ..+|+++.......+.     ...+.+...++|+|+..+++...-.+|+.+.-     .-|+++. 
T Consensus       239 yr~~~DnIiGvl--h~r~llr~l~e~~~~~-----k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~-----hialVVD-  305 (423)
T COG4536         239 YRDDLDNIIGVL--HVRDLLRLLNEKNEFT-----KEDILRAADEPYFVPEGTPLSDQLVAFQRNKK-----HIALVVD-  305 (423)
T ss_pred             ecCChhHhhhhh--hHHHHHHHhhccCccc-----HhHHHHHhcCCeecCCCCcHHHHHHHHHHhcc-----eEEEEEe-
Confidence            4 6677799999  7778777765333211     11344566999999999999777777765433     3455555 


Q ss_pred             cccCCCccceecchHHHHHHHhcCccCCCCchhhhhH
Q 010325          407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVH  443 (513)
Q Consensus       407 ~~~e~g~liGIITleDv~eel~~~ei~de~d~~~~~~  443 (513)
                         |+|.+.|+||+|||+||++| |+.||+|...+..
T Consensus       306 ---EYG~i~GLVTLEDIlEEIVG-dftde~d~~~~ev  338 (423)
T COG4536         306 ---EYGDIQGLVTLEDILEEIVG-DFTDEHDTLAKEV  338 (423)
T ss_pred             ---ccCcEEeeeeHHHHHHHHhc-cccccCcccchhh
Confidence               99999999999999999998 8889988766543

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.29  E-value=5.4e-12  Score=136.95  Aligned_cols=119  Identities=16%  Similarity=0.185  Sum_probs=95.2

Q ss_pred             hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCC
Q 010325          211 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPE  288 (513)
Q Consensus       211 ~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~  288 (513)
                      ++..+.++.+++++     ..|++  ++++++++.++. ++++.+.+++++.+||++++  .++++|+|+.+|+.... .
T Consensus        90 E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~  160 (505)
T PLN02274         90 EEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-D  160 (505)
T ss_pred             HHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-c
Confidence            34566777777543     22664  888999999999 99999999999999999863  36899999999997543 3


Q ss_pred             Cccccccccccc--ceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          289 TETPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       289 ~~~~v~dim~~~--~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                      .+.++.++|.++  ++++++++++.++++.|++++.+.+||||+.|.++|++
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI  212 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV  212 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence            457799998766  77999999999999999999999999999433333333

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.29  E-value=1.4e-11  Score=106.35  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=78.0

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      ++..+++++++. ++.+.+.+.+++++||++++ ++++|+++.+||+....+    ...++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   79 (115)
T cd04593           2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH   79 (115)
T ss_pred             CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence            345678999998 99999999999999999865 899999999999864322    123477888888999999999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|.+++.+.+||+|
T Consensus        80 ~l~~~~~~~~~~~~Vvd   96 (115)
T cd04593          80 ALDRMASRGLRQLPVVD   96 (115)
T ss_pred             HHHHHHHcCCceeeEEe
Confidence            99999999999999999

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.8e-11  Score=107.03  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=78.8

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------------cccccccccccc
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------ETPVSAVSIRRI  301 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~---------------~~~v~dim~~~~  301 (513)
                      ++.+++.+.++. ++++.+.+++++++||++++.++++|+|+.+|++....+.               ..++.+++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            566789999998 9999999999999999986447899999999998643221               236777777788


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++++.++++.|++.+.+.+||+|
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~  108 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVD  108 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence            9999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.27  E-value=9.3e-12  Score=128.10  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=88.8

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccccc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIRRI  301 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~~~~~v~dim~~~~  301 (513)
                      ..+|+++|++..++.++++++++. ++.+.+.+++.+.+||++++ ++++|+|+.+|+.....   ..+.++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            467999999732388999999998 99999999999999999865 89999999988875321   12456889988889


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .+++++.++.++++.|.+++...+||||
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  301 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVD  301 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999999999999

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=2.6e-11  Score=106.77  Aligned_cols=91  Identities=16%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc----c-------------ccccccc
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET----P-------------VSAVSIR  299 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~----~-------------v~dim~~  299 (513)
                      ++++++.+.++. ++++.|.+++++++||++++ ++++|+++.+|++....+...    +             ..+.+.+
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            577899999998 99999999999999999865 899999999999865422111    0             1134567


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  109 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVD  109 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence            788999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=2.3e-11  Score=104.20  Aligned_cols=91  Identities=20%  Similarity=0.305  Sum_probs=78.2

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccccceeeCCCCCHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---~~~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      ++..++.+.++. ++.+.+.+.+++++||++++ ++++|+++.+|++....+   ...++.++|.++++.+++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence            455688999998 99999999999999999865 899999999999764322   2346778888888999999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|.+++...+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (112)
T cd04624          80 AKLMRKNNIRHHLVVD   95 (112)
T ss_pred             HHHHHHcCccEEEEEc
Confidence            9999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.26  E-value=3.5e-11  Score=102.61  Aligned_cols=90  Identities=22%  Similarity=0.331  Sum_probs=78.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccccceeeCCCCCHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---~~~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      ++.+++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++.....   ...++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence            566789999998 9999999999999999976  799999999999865422   2456888888888999999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|.+.+.+.+||+|
T Consensus        79 l~~~~~~~~~~~~Vv~   94 (111)
T cd04611          79 RQLMREHGIRHLVVVD   94 (111)
T ss_pred             HHHHHHcCCeEEEEEC
Confidence            9999999999999998

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=2.2e-11  Score=104.11  Aligned_cols=91  Identities=29%  Similarity=0.451  Sum_probs=78.7

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccccceeeCCCCCHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL  314 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~~~~~~Vpe~~~l~d~L  314 (513)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+......  .+.++.++|.++++++++++++.+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence            566788999998 99999998999999999864 789999999999764221  23478888888899999999999999


Q ss_pred             HHHHhCCceEEEEEe
Q 010325          315 NEFQKGSSHMAAVVK  329 (513)
Q Consensus       315 ~~m~~~~~~~a~VVD  329 (513)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~Vv~   94 (111)
T cd04639          80 RLMQQGGAPAVPVVD   94 (111)
T ss_pred             HHHHhcCCceeeEEc
Confidence            999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.25  E-value=1.3e-11  Score=111.44  Aligned_cols=93  Identities=19%  Similarity=0.279  Sum_probs=80.7

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----ccccccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSI  298 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----~~~v~dim~  298 (513)
                      ..++++.+|+.  .++.+.+++++. ++.+.|.++|+|.+||+++  |+++|-|+..++.....++     ...++++|-
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~  137 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMG  137 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhc
Confidence            45789999995  999999999999 9999999999999999986  7999999999998765432     357889999


Q ss_pred             ccceeeCCCCCHHHHHHHHHhCC
Q 010325          299 RRIPRVPSDMPLYDILNEFQKGS  321 (513)
Q Consensus       299 ~~~~~Vpe~~~l~d~L~~m~~~~  321 (513)
                      .++++|.++.++..+-..+..+.
T Consensus       138 e~fP~Vs~~~~l~vI~~LL~~~~  160 (187)
T COG3620         138 EPFPTVSPDESLNVISQLLEEHP  160 (187)
T ss_pred             CCCCcCCCCCCHHHHHHHHhhCC
Confidence            99999999999988877776654

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=2.5e-11  Score=106.30  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=74.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--c-----------cccccccccccee
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--E-----------TPVSAVSIRRIPR  303 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~-----------~~v~dim~~~~~~  303 (513)
                      ++..++.++++. ++++.+.+++++++||++++.++++|+++.+|++....+.  .           ..+.++|.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            467789999998 9999999999999999986436899999999987632111  0           0112345677889


Q ss_pred             eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       304 Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVD  106 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence            99999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=3e-11  Score=108.46  Aligned_cols=91  Identities=15%  Similarity=0.151  Sum_probs=78.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------------------------
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------------------  289 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~---------------------------  289 (513)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|++......                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            567789999998 99999999999999999864 8999999999998653211                           


Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..+++++|..++.+|++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~  119 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD  119 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence            2367888877888999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.25  E-value=1.9e-11  Score=135.64  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=89.6

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---C-Cccccccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---E-TETPVSAVSI  298 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~-~~~~v~dim~  298 (513)
                      ++..+|+|+|++  +...++.+++++ |+.+.+.+++++.+||+|++ ++++|+|+.+|+.+...   + .+.++.++|.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            566789999987  667899999998 99999999999999999865 78999999999986321   1 2356888888


Q ss_pred             ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++.++++++++.++++.|.+++.+.+||+|
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd  550 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE  550 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence            8889999999999999999999999999999

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=3.6e-11  Score=104.61  Aligned_cols=91  Identities=21%  Similarity=0.311  Sum_probs=78.4

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-------------Cccccccccccccee
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------TETPVSAVSIRRIPR  303 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-------------~~~~v~dim~~~~~~  303 (513)
                      ++.++..+.++. ++.+.+.+.+++++||++++ ++++|+++.+|++.....             ...++.+++.+++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            456788999998 99999999999999999865 799999999999864321             234677777788899


Q ss_pred             eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       304 Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++.++++.|++++.+.+||+|
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04803          80 VTPDTPLREAAEIMVENKIGCLPVVD  105 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.25  E-value=2e-11  Score=132.39  Aligned_cols=127  Identities=13%  Similarity=0.149  Sum_probs=99.5

Q ss_pred             hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCC
Q 010325          211 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPE  288 (513)
Q Consensus       211 ~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~  288 (513)
                      ++++++++.+.++..   +.++.|    .++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+......
T Consensus        87 e~qa~lV~kVk~~~~---g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~  158 (502)
T PRK07107         87 ESEAAMVRRVKNYKA---GFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS  158 (502)
T ss_pred             HHHHHHHHHHHHHhc---CCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence            455666666655442   222332    4789999999 99999999999999999852  4799999999999754323


Q ss_pred             Ccccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcc
Q 010325          289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (513)
Q Consensus       289 ~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile  347 (513)
                      .+.+++++|..  +++++++++++.++++.|.+++.+.+||+|+.|.++|++  |.+|+++
T Consensus       159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGII--T~~Dilk  217 (502)
T PRK07107        159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLV--FRKDYDS  217 (502)
T ss_pred             CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EhHHHHh
Confidence            45689999875  678899999999999999999999999999767777777  6666655

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=3.7e-11  Score=103.45  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=75.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------cccccccccccceeeCCC
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------ETPVSAVSIRRIPRVPSD  307 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~---------~~~v~dim~~~~~~Vpe~  307 (513)
                      ++++++.++++. ++++.|.+.+++++||++++ ++++|+++.+|++......         +.++.++|..++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            678899999998 99999999999999999864 7899999999998654321         346778877788999999


Q ss_pred             CCHHHHHHHHHhCCceEEEEEe
Q 010325          308 MPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       308 ~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++.++++.|.+.+  .+||+|
T Consensus        80 ~~l~~a~~~~~~~~--~~~Vv~   99 (116)
T cd04643          80 ADIEEILHLLIDQP--FLPVVD   99 (116)
T ss_pred             CCHHHHHHHHhcCC--ceeEEe
Confidence            99999999998865  588998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.24  E-value=3.5e-11  Score=102.97  Aligned_cols=91  Identities=15%  Similarity=0.247  Sum_probs=79.1

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      ++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|+.....+    ...++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   79 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED   79 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence            566789999999 99999999999999999865 789999999999864322    125678888888999999999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|++.+.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~Vv~   96 (114)
T cd04613          80 ALKKFEDSDYEQLPVVD   96 (114)
T ss_pred             HHHHHhhCCccEeeEEe
Confidence            99999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.23  E-value=5.5e-11  Score=101.38  Aligned_cols=90  Identities=20%  Similarity=0.301  Sum_probs=77.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc---ccccccccccceeeCCCCCHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~---~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      ++..++.+.++. ++++.+.+.+++++||+++  ++++|+++.+|++.......   .++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence            566789999998 9999999999999999986  89999999999986543221   15667778889999999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|++++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~V~~   94 (111)
T cd04612          79 LKRMAERDIGRLPVVD   94 (111)
T ss_pred             HHHHHhCCCCeeeEEc
Confidence            9999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.23  E-value=5.4e-11  Score=100.53  Aligned_cols=88  Identities=10%  Similarity=0.215  Sum_probs=77.5

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++..++.++++. ++++.+.+++++.+||+++  ++++|+++.+|++...  ...++.++|..++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH--PNRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc--ccCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            456788999998 9999999999999999973  7999999999998753  2346788887888999999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++...+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (105)
T cd04599          77 MEEKKIERLPVLR   89 (105)
T ss_pred             HHHcCCCEeeEEE
Confidence            9999999999999

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.22  E-value=6e-11  Score=101.27  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=78.0

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccccceeeCCCCCHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL  314 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~~~v~dim~~~~~~Vpe~~~l~d~L  314 (513)
                      +++.++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|++......  ..++.+++..++.+++++.++.+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence            566788999998 9999999999999999986  7899999999998754322  2467787778889999999999999


Q ss_pred             HHHHhCCceEEEEEe
Q 010325          315 NEFQKGSSHMAAVVK  329 (513)
Q Consensus       315 ~~m~~~~~~~a~VVD  329 (513)
                      +.|.+.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~V~~   93 (110)
T cd04588          79 RLMNKHNVGRLIVTD   93 (110)
T ss_pred             HHHHhcCCCEEEEEC
Confidence            999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.22  E-value=2.8e-11  Score=104.26  Aligned_cols=92  Identities=17%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC--Cccccccccc--ccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSI--RRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~-~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~--~~~~~Vpe~~~l~  311 (513)
                      ++.+++.+.++. ++.+.+.+++ ++++||++++ ++++|+++.+|++.....  .+.++.++|.  .+++.+.+++++.
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence            566789999998 9999887665 8999999764 789999999999865432  1356777764  2356899999999


Q ss_pred             HHHHHHHhCCceEEEEEec
Q 010325          312 DILNEFQKGSSHMAAVVKA  330 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVDE  330 (513)
                      ++++.|++++.+.+||+|+
T Consensus        80 ~a~~~~~~~~~~~l~Vv~~   98 (114)
T cd04801          80 EVLKLLEEQGLDELAVVED   98 (114)
T ss_pred             HHHHHHHHCCCCeeEEEcC
Confidence            9999999999999999993

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=5e-11  Score=105.82  Aligned_cols=91  Identities=16%  Similarity=0.256  Sum_probs=77.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----c--------------------cc
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----E--------------------TP  292 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~----~--------------------~~  292 (513)
                      ++.++..+.++. ++++.+.+.+++++||++++ ++++|+++.+|++......    .                    .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            456789999998 99999999999999999865 7999999999998543211    1                    16


Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~  116 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD  116 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence            7777778889999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=5e-11  Score=103.68  Aligned_cols=91  Identities=12%  Similarity=0.223  Sum_probs=77.8

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-------------CCccccccccccccee
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR  303 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-------------~~~~~v~dim~~~~~~  303 (513)
                      ++++++.+.++. ++++.+.+.+++.+||++++ ++++|+++.+|++....             ....++.++|.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            567889999998 99999999999999999754 89999999999985311             0234567777778889


Q ss_pred             eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       304 Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vvd  105 (122)
T cd04635          80 VTPDDSIATAVELMLEHDIGRLPVVN  105 (122)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence            99999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.22  E-value=7.6e-11  Score=99.94  Aligned_cols=88  Identities=15%  Similarity=0.302  Sum_probs=77.4

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++++++.+.++. ++++.+.+.+++++||+++  ++++|+++.+||+...  ...++.++|..++.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            677889999998 9999998888999999975  8999999999998642  2356888887888899999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vv~   90 (107)
T cd04610          78 MFRTGISKLPVVD   90 (107)
T ss_pred             HHHhCCCeEeEEC
Confidence            9999999999999

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.21  E-value=7.6e-11  Score=100.15  Aligned_cols=90  Identities=17%  Similarity=0.273  Sum_probs=78.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++..++.+.++. ++++.+.++++.++||++++ ++++|+++.+|++.... ...++.++|...+.++++++++.+++..
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            566789999998 99999999999999999865 78999999999986432 2356788888888999999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~vv~   92 (109)
T cd04583          80 VLKRGPKYVPVVD   92 (109)
T ss_pred             HHHcCCceeeEEC
Confidence            9999999999999

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK11573 hypothetical protein; Provisional

Probab=99.21  E-value=9.7e-11  Score=124.68  Aligned_cols=132  Identities=14%  Similarity=0.222  Sum_probs=101.2

Q ss_pred             ccccccccc--ccceeeCCCCCHHHHHHHHHhCCceEEEEEec-CCCcccCCCCCCCCCccccccCCCCCCCCccccccc
Q 010325          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (513)
Q Consensus       290 ~~~v~dim~--~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE-~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~  366 (513)
                      +.+++++|+  .++..++.+.++.++++.+.+++....||.++ .+.++|++  ..+|++......   .+.  +.....
T Consensus       186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv--~~kDll~~~~~~---~~~--~~~~l~  258 (413)
T PRK11573        186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISML--RVREAYRLMTEK---KEF--TKENML  258 (413)
T ss_pred             CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEE--EHHHHHHHhhcc---CcC--CHHHHH
Confidence            456788875  45778999999999999999999999999865 48899999  778877532210   000  111122


Q ss_pred             cccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (513)
Q Consensus       367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~  438 (513)
                      +.....++|+..+++.++-+.|+......+..++         |+|+++||||+|||+|+|+| ||.||+|.
T Consensus       259 ~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---------EyG~~~GiVTleDilEeivG-ei~de~d~  320 (413)
T PRK11573        259 RAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---------EYGDIQGLVTVEDILEEIVG-DFTTSMSP  320 (413)
T ss_pred             hhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---------cCCCeEEEeeHHHHHHHHhC-CCCcccCc
Confidence            3345689999999999999888877665544443         89999999999999999998 89999874

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.21  E-value=8.7e-11  Score=99.86  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=74.4

Q ss_pred             EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHh
Q 010325          240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK  319 (513)
Q Consensus       240 ~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~  319 (513)
                      +++.+.++. ++++.+.+.+++++||+++  ++++|+++.+|++....   .++.++|..++.+++++.++.++++.|.+
T Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~   78 (104)
T cd04594           5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK   78 (104)
T ss_pred             EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence            578899998 9999999999999999985  89999999999986432   34677777888899999999999999999


Q ss_pred             CCceEEEEEe
Q 010325          320 GSSHMAAVVK  329 (513)
Q Consensus       320 ~~~~~a~VVD  329 (513)
                      ++.+.+||+|
T Consensus        79 ~~~~~~~Vv~   88 (104)
T cd04594          79 NKTRWCPVVD   88 (104)
T ss_pred             cCcceEEEEE
Confidence            9999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=5.6e-11  Score=103.42  Aligned_cols=92  Identities=14%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Ccccccccccc--cceeeCCCCCH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR--RIPRVPSDMPL  310 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~--~~~~Vpe~~~l  310 (513)
                      ++.+++.++++. ++++.|.+++.+.+||.+++ ++++|+|+.+|++.....    ...++.++|.+  +++++++++++
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            456789999998 99999999999999999864 789999999998865321    13456677654  67899999999


Q ss_pred             HHHHHHHHhCCceEEEEEec
Q 010325          311 YDILNEFQKGSSHMAAVVKA  330 (513)
Q Consensus       311 ~d~L~~m~~~~~~~a~VVDE  330 (513)
                      .++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~   99 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEK   99 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeC
Confidence            99999999999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=6.6e-11  Score=104.30  Aligned_cols=91  Identities=19%  Similarity=0.310  Sum_probs=73.2

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----------CCCccccccccccccee--e
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----------PETETPVSAVSIRRIPR--V  304 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~----------~~~~~~v~dim~~~~~~--V  304 (513)
                      ++.++..+.++. ++++.|.++++..+||.+++ ++++|+++.+|+....          .....+++++|.++...  +
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~   79 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL   79 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence            356788999998 99999998999999999865 7899999999988421          11235678887554433  3


Q ss_pred             ----CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          305 ----PSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       305 ----pe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                          ++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd  108 (126)
T cd04640          80 DLEELENASVGDVVETLKASGRQHALVVD  108 (126)
T ss_pred             cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence                3789999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.20  E-value=8.6e-11  Score=101.04  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccccceeeCCCCCHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---~~~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      +.++++.+.++. ++++.+.+.++..+||++++ ++++|+++.+|++....+   ...++.++|..++.++++++++.++
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04607           3 KQLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEI   80 (113)
T ss_pred             cceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHH
Confidence            345688999998 99999999999999999765 789999999998753221   2356888877778899999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~Vv~   96 (113)
T cd04607          81 LALMRERSIRHLPILD   96 (113)
T ss_pred             HHHHHHCCCCEEEEEC
Confidence            9999999999999999

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.20  E-value=1.1e-10  Score=98.89  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++.+++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|++....   .++.++|.+.+..+++++++.++++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence            566788999998 99999999999999999754 89999999999986432   34677776677789999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++...+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (106)
T cd04582          77 MFAHDMSWLPCVD   89 (106)
T ss_pred             HHHCCCCeeeEEC
Confidence            9999999999999

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.20  E-value=6.2e-11  Score=127.77  Aligned_cols=101  Identities=20%  Similarity=0.271  Sum_probs=88.1

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceee
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~V  304 (513)
                      ..++.++|++  +++++.+++++. ++++.|.+++++.+||+++  ++++|+|+.+|+....  ...+++++|.++++++
T Consensus        87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~litv  159 (475)
T TIGR01303        87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVTA  159 (475)
T ss_pred             hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceEe
Confidence            4567788885  778999999999 9999999999999999875  6899999999997543  3467999999999999


Q ss_pred             CCCCCHHHHHHHHHhCCceEEEEEecCC
Q 010325          305 PSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (513)
Q Consensus       305 pe~~~l~d~L~~m~~~~~~~a~VVDE~G  332 (513)
                      ++++++.++++.|.+++.+.+||+|+.|
T Consensus       160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g  187 (475)
T TIGR01303       160 PADTEPRKAFDLLEHAPRDVAPLVDADG  187 (475)
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEEEcCCC
Confidence            9999999999999999999999999433

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.20  E-value=9.2e-11  Score=100.42  Aligned_cols=90  Identities=19%  Similarity=0.264  Sum_probs=77.5

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      +++.++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++.....    ...++.++|.+++..+++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence            456788999998 9999999999999999986  689999999999864321    235678888788899999999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04589          79 ALLLMTRHRIHRVVVRE   95 (111)
T ss_pred             HHHHHHHhCccEEEEee
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.20  E-value=8.7e-11  Score=99.97  Aligned_cols=90  Identities=18%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCC-CCCHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS-DMPLYDILN  315 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe-~~~l~d~L~  315 (513)
                      ++..++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|++... ....++.++|..++.++.. ++++.++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFET-DLDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeecc-cCCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            567788999998 99999999999999999865 8999999999997543 2345788887666666666 999999999


Q ss_pred             HHHhCCceEEEEEe
Q 010325          316 EFQKGSSHMAAVVK  329 (513)
Q Consensus       316 ~m~~~~~~~a~VVD  329 (513)
                      .|++++.+.+||+|
T Consensus        80 ~~~~~~~~~~~Vv~   93 (110)
T cd04601          80 LLHEHKIEKLPVVD   93 (110)
T ss_pred             HHHHhCCCeeeEEc
Confidence            99999999999999

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.19  E-value=9.8e-11  Score=101.23  Aligned_cols=90  Identities=18%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------Ccccccccccccce
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP  302 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------~~~~v~dim~~~~~  302 (513)
                      ++.+++.+.++. ++++.+.+.+++.+||+++  ++++|+++.+|++.....              ...++.++|.+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            456789999999 9999999999999999986  899999999999865321              12456777778889


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++++.+++..|++++.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04585          79 TVSPDASVEEAAELMLERKISGLPVVD  105 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence            999999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=9e-11  Score=103.37  Aligned_cols=91  Identities=14%  Similarity=0.276  Sum_probs=76.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----------------Ccccccccccc
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----------------TETPVSAVSIR  299 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----------------~~~~v~dim~~  299 (513)
                      ++..++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+......                 .+.++.++|.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            566788999998 99999999999999999865 789999999998743210                 12457788878


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++++++.++++.|.+++.+.+||++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence            889999999999999999999989888885

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=1.3e-10  Score=98.08  Aligned_cols=78  Identities=8%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++.+++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+....             .+.++++++++.++++.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~   66 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK   66 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence            567889999998 99999999999999999864 7999999999998532             16789999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++.+.+||+|
T Consensus        67 m~~~~~~~lpVv~   79 (96)
T cd04614          67 MKRNRIEQIPIIN   79 (96)
T ss_pred             HHHhCCCeeeEEC
Confidence            9999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.19  E-value=9.8e-11  Score=127.11  Aligned_cols=128  Identities=13%  Similarity=0.207  Sum_probs=107.6

Q ss_pred             hHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCC
Q 010325          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET  289 (513)
Q Consensus       212 ~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~~  289 (513)
                      ++.+.++++.++++     .|++  +++++++++++. ++++.+.+++++.+||++++  .++++|+|+.+|+.... ..
T Consensus        87 ~~~~~v~kvk~~e~-----g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~  157 (495)
T PTZ00314         87 EQVEEVRKVKRFEN-----GFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK  157 (495)
T ss_pred             HHHHHHhhcccccc-----cccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence            45667777765554     6654  778899999999 99999999999999999863  36899999999997543 33


Q ss_pred             cccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccc
Q 010325          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (513)
Q Consensus       290 ~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~  350 (513)
                      +.+++++|.+  +++++++++++.++++.|++++.+.+||+|+.|.+.|++  |.+|+++...
T Consensus       158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII--T~~DIl~~~~  218 (495)
T PTZ00314        158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV--SRSDLKKNRG  218 (495)
T ss_pred             CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE--EehHhhhccc
Confidence            5678999876  788999999999999999999999999999999999999  8888877643

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.19  E-value=1.1e-10  Score=99.81  Aligned_cols=90  Identities=19%  Similarity=0.263  Sum_probs=77.7

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CCcccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~----~~~~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|++....    ....++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence            567789999998 9999999999999999986  89999999999875211    1235677888888999999999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|++++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04800          79 ALLLMLERGIHHLPVVD   95 (111)
T ss_pred             HHHHHHHcCCCeeeEeE
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.18  E-value=1.1e-10  Score=99.72  Aligned_cols=90  Identities=20%  Similarity=0.354  Sum_probs=78.5

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccccceeeCCCCCHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL  314 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~~~~~~Vpe~~~l~d~L  314 (513)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|++.....  ...++.++|.+++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            567889999998 9999999999999999986  799999999998754321  23568888888899999999999999


Q ss_pred             HHHHhCCceEEEEEe
Q 010325          315 NEFQKGSSHMAAVVK  329 (513)
Q Consensus       315 ~~m~~~~~~~a~VVD  329 (513)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~V~~   94 (110)
T cd04595          80 ELMVEHDIGRVPVVE   94 (110)
T ss_pred             HHHHHcCCCeeEEEe
Confidence            999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.18  E-value=9e-11  Score=100.52  Aligned_cols=91  Identities=15%  Similarity=0.205  Sum_probs=77.3

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      ++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.++++.....    ...++.++|..++.++++++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            556688999998 99999998899999999865 799999998888754322    124688888788889999999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~Vv~   97 (114)
T cd04604          81 ALELMEENKITALPVVD   97 (114)
T ss_pred             HHHHHHHcCCCEEEEEC
Confidence            99999999999999998

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.18  E-value=3.5e-10  Score=121.18  Aligned_cols=130  Identities=17%  Similarity=0.110  Sum_probs=104.1

Q ss_pred             ccccccccc--ccceeeCCCCCHHHHHHHHHhCCceEEEEEe-cCCCcccCCCCCCCCCccccccCCCCCCCCccccccc
Q 010325          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (513)
Q Consensus       290 ~~~v~dim~--~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD-E~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~  366 (513)
                      +.+++++|+  .++..++.+.+..++.+.+.+.+....||.| .-+.++|++  +.+|++........ ..      ...
T Consensus       205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv--~~Kdll~~~~~~~~-~~------~~~  275 (429)
T COG1253         205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIV--HVKDLLRALLDGQS-DL------DLR  275 (429)
T ss_pred             CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEE--EHHHHHHHHhcCcc-cc------chh
Confidence            456778875  4567899999999999999999999999999 788999999  88999888765432 11      011


Q ss_pred             cccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (513)
Q Consensus       367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~  438 (513)
                      ..-...++|+..+++.++-+.|+......+..++         |+|.+.|+||+|||+|+++| ||.||+|+
T Consensus       276 ~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---------EyG~~~GlVTleDIiEeIvG-ei~de~d~  337 (429)
T COG1253         276 VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---------EYGGVEGLVTLEDIIEEIVG-EIPDEHDE  337 (429)
T ss_pred             hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---------cCCCeEEEeEHHHHHHHHhC-CCcCcccc
Confidence            1122789999999999998888876555544443         89999999999999999998 99999986

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=1.3e-10  Score=99.67  Aligned_cols=90  Identities=13%  Similarity=0.231  Sum_probs=76.9

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHHH
Q 010325          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      ...++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++....+    ...++.++|..++.++++++++.++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA   80 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence            45678999998 99999999999999999864 789999999999863211    2356788877888999999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|.+.+.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~Vvd   96 (113)
T cd04615          81 RWLMSNNNISRLPVLD   96 (113)
T ss_pred             HHHHHHcCCCeeeEEC
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.17  E-value=1.1e-10  Score=99.92  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=72.1

Q ss_pred             EeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHH
Q 010325          241 LDVNSKLDWEAMGKILARGH-----SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (513)
Q Consensus       241 v~~d~sl~~eal~~i~~~~~-----sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~  315 (513)
                      +.++.++. ++++.+.++++     ..+||++++ ++++|+++.+|++...  .+.++.+++..++..+++++++.++++
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            46778888 99999988774     678999754 7899999999998642  345688887777889999999999999


Q ss_pred             HHHhCCceEEEEEe
Q 010325          316 EFQKGSSHMAAVVK  329 (513)
Q Consensus       316 ~m~~~~~~~a~VVD  329 (513)
                      .|.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~~Vv~   91 (109)
T cd04606          78 LFEKYDLLALPVVD   91 (109)
T ss_pred             HHHHcCCceeeeEC
Confidence            99999999999998

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=1.9e-10  Score=97.67  Aligned_cols=89  Identities=18%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~  316 (513)
                      ++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.++++....  ..++.++|..++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            577889999998 99999999999999999866 88999999999985422  245677777788899999999999999


Q ss_pred             HHhCCceEEEEEe
Q 010325          317 FQKGSSHMAAVVK  329 (513)
Q Consensus       317 m~~~~~~~a~VVD  329 (513)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vvd   90 (106)
T cd04638          78 MVENNIRRVPVVD   90 (106)
T ss_pred             HHHcCCCEEEEEE
Confidence            9999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.17  E-value=1.2e-10  Score=100.57  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccccceeeCC--CCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS--DMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe--~~~l~d  312 (513)
                      ++.+++.++++. ++++.+.+.+++++||+++.  .++++|+++.+|++.... ...+++++|..+...+..  ++++.+
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            566788999998 99999998999999999852  379999999999975432 235588887766666655  999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|++++.+.+||+|
T Consensus        81 ~l~~~~~~~~~~~pVv~   97 (114)
T cd04602          81 ANEILRESKKGKLPIVN   97 (114)
T ss_pred             HHHHHHhcCCCceeEEC
Confidence            99999999999999999

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=9.1e-11  Score=100.65  Aligned_cols=91  Identities=21%  Similarity=0.267  Sum_probs=77.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC------CCcccccccccccceeeCCCCCH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------ETETPVSAVSIRRIPRVPSDMPL  310 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~------~~~~~v~dim~~~~~~Vpe~~~l  310 (513)
                      ++..++.+.++. ++.+.+.+.+++++||++++ ++++|+++.+|++....      ....++.++|..++.++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   79 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI   79 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence            456788999998 99999998899999999864 78999999999985321      12356788877788899999999


Q ss_pred             HHHHHHHHhCCceEEEEEe
Q 010325          311 YDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       311 ~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~~~Vv~   98 (114)
T cd04629          80 VDLAQLMLKAKPKRYPVVD   98 (114)
T ss_pred             HHHHHHHHHhCCCccCEEE
Confidence            9999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.16  E-value=1e-10  Score=104.15  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=78.0

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC--------------------------CCc
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP--------------------------ETE  290 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~--------------------------~~~  290 (513)
                      ++.+++.+.++. ++++.|.++++.++||++++ ++++|+++.+|++....                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            667889999998 99999999999999999754 88999999999875321                          123


Q ss_pred             ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++.++|..++..+++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd  119 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR  119 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence            457787777888999999999999999999999999998

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.16  E-value=5.9e-11  Score=104.89  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=69.7

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~----~~~~~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      ++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++...    ...+.+++++|.+++.++.+++++.+
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            677899999998 99999999999999999865 7899999999998521    12357899999999999999999999


Q ss_pred             HHHHHHh
Q 010325          313 ILNEFQK  319 (513)
Q Consensus       313 ~L~~m~~  319 (513)
                      +.+.|..
T Consensus        81 v~~~~~~   87 (124)
T cd04608          81 LSRILET   87 (124)
T ss_pred             HHhhccc
Confidence            9997654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.16  E-value=1.1e-10  Score=125.83  Aligned_cols=104  Identities=18%  Similarity=0.318  Sum_probs=86.3

Q ss_pred             HHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Cccc
Q 010325          217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETP  292 (513)
Q Consensus       217 I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~  292 (513)
                      ..++  ++..+|+++|.+  ++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.....    .+.+
T Consensus       328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~  401 (454)
T TIGR01137       328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA  401 (454)
T ss_pred             HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence            4444  788999999986  788999999998 99999999999999999865 789999999999863321    2346


Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++|.+++++|++++++.++++.|.+++  . +||+
T Consensus       402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~-~vV~  435 (454)
T TIGR01137       402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--S-AIVT  435 (454)
T ss_pred             HHHhcCCCCeEECCcCcHHHHHHHHHHCC--e-eEEE
Confidence            88888888889999999999999998864  3 4455

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.16  E-value=1.4e-10  Score=99.37  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=76.4

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CC-cccccccccccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ET-ETPVSAVSIRRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~----~~-~~~v~dim~~~~~~Vpe~~~l~  311 (513)
                      ++..+..+.+++ ++++.+.+++++++||.++  ++++|+++.+|++....    .. ..++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~   78 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL   78 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence            566788999998 9999999999999999985  89999999999874211    11 1567788878888999999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~l~Vv~   96 (113)
T cd04587          79 EALHLMVQGKFRHLPVVD   96 (113)
T ss_pred             HHHHHHHHcCCCcccEEC
Confidence            999999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=1e-10  Score=101.79  Aligned_cols=90  Identities=13%  Similarity=0.209  Sum_probs=77.3

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------Ccccccccccccce
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP  302 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------~~~~v~dim~~~~~  302 (513)
                      ++..++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|+......              ...++.++|.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            567789999998 9999999999999999985  799999999999753211              12357777778889


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~  105 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVD  105 (122)
T ss_pred             eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence            999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=1.6e-10  Score=99.47  Aligned_cols=90  Identities=12%  Similarity=0.307  Sum_probs=73.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCC--CC
Q 010325          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSD--MP  309 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~-~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~--~~  309 (513)
                      ++..++.+.++. ++++.+.+++ +..+||.++  ++++|+++.+|++....+    ...++.++|.+++++++++  ++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~   78 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD   78 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence            455688999998 9999998888 667777763  789999999999864322    1256778877788889887  78


Q ss_pred             HHHHHHHHHhCCceEEEEEe
Q 010325          310 LYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       310 l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++++.|.+++.+.+||+|
T Consensus        79 l~~a~~~~~~~~~~~~pVvd   98 (115)
T cd04620          79 IFTALSLFRQHQIRHLPVLD   98 (115)
T ss_pred             HHHHHHHHHHhCCceEEEEc
Confidence            99999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=2.5e-10  Score=97.77  Aligned_cols=90  Identities=14%  Similarity=0.238  Sum_probs=76.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc-CC---C-CcccccccccccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV-RP---E-TETPVSAVSIRRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~-~~---~-~~~~v~dim~~~~~~Vpe~~~l~  311 (513)
                      ++.+++.+.++. ++.+.+.+.+++.+||+++  ++++|+++.+|++.. ..   . ...++.++|...+.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence            567789999998 9999999999999999986  899999999998632 11   1 11247888878888999999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~V~~   96 (113)
T cd04622          79 EAARLMREHQVRRLPVVD   96 (113)
T ss_pred             HHHHHHHHcCCCeeeEEC
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.14  E-value=1.8e-10  Score=98.76  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=74.7

Q ss_pred             ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHH
Q 010325          236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI  313 (513)
Q Consensus       236 ~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~  313 (513)
                      .+...++++.+++ ++.+.+.+.+++++||+++.  .++++|+|+.+|+......       +|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence            3677889999998 99999999999999999862  3789999999999865321       567788899999999999


Q ss_pred             HHHHHhCCceEEEEEe
Q 010325          314 LNEFQKGSSHMAAVVK  329 (513)
Q Consensus       314 L~~m~~~~~~~a~VVD  329 (513)
                      ++.|++++.+.+||++
T Consensus        74 ~~~~~~~~~~~~pVv~   89 (105)
T cd04591          74 HQLFRKLGLRHLLVVD   89 (105)
T ss_pred             HHHHHHcCCCEEEEEE
Confidence            9999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=3.5e-10  Score=96.79  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=77.1

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCcccccccccccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-----~~~~~v~dim~~~~~~Vpe~~~l~  311 (513)
                      +++.++.+.++. ++++.+.+++++.+||+++  ++++|+++.+|++....     ....++.++|.++++++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   78 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence            456788999998 9999999999999999986  48999999999986321     123467788777888999999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~Vv~   96 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVD   96 (112)
T ss_pred             HHHHHHHHcCCCeeEEee
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.10  E-value=3.8e-10  Score=97.78  Aligned_cols=91  Identities=13%  Similarity=0.205  Sum_probs=77.8

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-------------CCccccccccccccee
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR  303 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-------------~~~~~v~dim~~~~~~  303 (513)
                      ++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|+.....             ....++.++|..++.+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            456788999998 99999999999999999875 89999999999875321             1124577877788889


Q ss_pred             eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       304 Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 i~~~~~l~~~~~~~~~~~~~~~~V~~  105 (121)
T cd04584          80 VHPLDTVEEAALLMREHRIGCLPVVE  105 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence            99999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.10  E-value=3.9e-10  Score=95.78  Aligned_cols=88  Identities=23%  Similarity=0.366  Sum_probs=72.8

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----cccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~----~~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      ++.+++.++++. ++.+.+.+++++++||+++  ++++|+++.+|+.....+.    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   78 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE   78 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence            456788999998 9999999999999999985  7999999999998753221    24677777778889999999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|++ ..+ +||+|
T Consensus        79 ~~~~~~~-~~~-~~vv~   93 (110)
T cd04609          79 LSELLDR-GNV-AVVVD   93 (110)
T ss_pred             HHHHHHh-CCc-eeEEe
Confidence            9999988 333 68888

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=5e-10  Score=95.83  Aligned_cols=90  Identities=14%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----CcccccccccccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~dim~~~~~~Vpe~~~l~  311 (513)
                      ++..++.++++. ++++.+.+++++.++|.++  ++++|+++.+|++....+     ...++.++|..++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   78 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID   78 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence            567889999998 9999998888888877653  799999999999854321     23568888777788999999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|.+++...+||+|
T Consensus        79 ~a~~~m~~~~~~~l~Vv~   96 (112)
T cd04625          79 EVRRLMVERHLRYLPVLD   96 (112)
T ss_pred             HHHHHHHHcCCCeeeEEE
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=4.9e-10  Score=97.27  Aligned_cols=90  Identities=19%  Similarity=0.326  Sum_probs=77.2

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------Ccccccccccccce
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP  302 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------~~~~v~dim~~~~~  302 (513)
                      +++.++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|++.....              ...++.++|..++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            456788999998 9999999999999999985  899999999999864221              12467777778889


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (121)
T cd04633          79 TIEPDTSVSDVASLMLENNIGGLPVVD  105 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence            999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=8.9e-10  Score=92.71  Aligned_cols=91  Identities=21%  Similarity=0.319  Sum_probs=76.8

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc----ccccccccccceeeCCCCCHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE----TPVSAVSIRRIPRVPSDMPLYD  312 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~----~~v~dim~~~~~~Vpe~~~l~d  312 (513)
                      ++..++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|++.......    ..+.++|..+..++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            456788999998 99999999999999999865 79999999999986543211    1145667788889999999999


Q ss_pred             HHHHHHhCCceEEEEEe
Q 010325          313 ILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       313 ~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|.+.+.+.++|+|
T Consensus        80 ~~~~~~~~~~~~~~V~~   96 (113)
T cd02205          80 AAELMLEHGIRRLPVVD   96 (113)
T ss_pred             HHHHHHHcCCCEEEEEc
Confidence            99999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=6.5e-10  Score=100.51  Aligned_cols=90  Identities=13%  Similarity=0.262  Sum_probs=76.9

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----------------------------
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------------------  288 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----------------------------  288 (513)
                      ++++++.+.++. ++.+.|.+.+++.+||+++  ++++|+++.+|++.....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            567889999998 9999999999999999985  799999999998753211                            


Q ss_pred             --------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          289 --------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       289 --------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                              ...++.++|.++++++++++++.++++.|++.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~  127 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE  127 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence                    12346677778889999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.05  E-value=4.1e-10  Score=112.76  Aligned_cols=110  Identities=12%  Similarity=0.098  Sum_probs=96.6

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccccce
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIRRIP  302 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~~~~~v~dim~~~~~  302 (513)
                      .+|+++|.+. ++..+++++++. ++++.+.+.+++.+||++++ ++++|+++.+|++....   ..+.+++++|.++++
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999862 278899999998 99999999999999999865 78999999999986432   124678899888889


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                      ++++++++.++++.|.+++.+.+||+|+.|.+.|++
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI  267 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL  267 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence            999999999999999999999999999999999987

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.03  E-value=9.9e-10  Score=95.04  Aligned_cols=90  Identities=17%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC-------CcccccccccccceeeCCCC
Q 010325          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------TETPVSAVSIRRIPRVPSDM  308 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~-~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-------~~~~v~dim~~~~~~Vpe~~  308 (513)
                      ++.+++.++++. ++++.+.+.+ ++.+||+++  ++++|+++.+|++.....       .+.++.++|..++.++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   78 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence            445678999998 9999998887 899999986  899999999999754221       23568888878888999999


Q ss_pred             CHHHHHHHHHhCCce---EEEEEe
Q 010325          309 PLYDILNEFQKGSSH---MAAVVK  329 (513)
Q Consensus       309 ~l~d~L~~m~~~~~~---~a~VVD  329 (513)
                      ++.++++.|.+++..   ..+|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vv~  102 (119)
T cd04598          79 PLEEVSRLATGRDSQNLYDGFIVT  102 (119)
T ss_pred             CHHHHHHHHHcCCcccccccEEEe
Confidence            999999999988752   346787

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.00  E-value=2.1e-09  Score=92.46  Aligned_cols=95  Identities=21%  Similarity=0.354  Sum_probs=82.6

Q ss_pred             cccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-c--cccccccccceeeCC
Q 010325          230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-T--PVSAVSIRRIPRVPS  306 (513)
Q Consensus       230 dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-~--~v~dim~~~~~~Vpe  306 (513)
                      ++|.  .+++++.++.++. ++...|.+++++++||.++  ++++|+++.+|++.+..... .  ++.++|.+++.++.+
T Consensus         3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~   77 (117)
T COG0517           3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP   77 (117)
T ss_pred             cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence            4555  4888999999998 9999999999999999975  37999999999998754332 2  478888888999999


Q ss_pred             CCCHHHHHHHHHh-CCceEEEEEe
Q 010325          307 DMPLYDILNEFQK-GSSHMAAVVK  329 (513)
Q Consensus       307 ~~~l~d~L~~m~~-~~~~~a~VVD  329 (513)
                      +.++.++++.|.+ ++.+.+||+|
T Consensus        78 ~~~~~~~~~~m~~~~~~~~lpVv~  101 (117)
T COG0517          78 DTPLEEALELMVERHKIRRLPVVD  101 (117)
T ss_pred             CCCHHHHHHHHHHHcCcCeEEEEE
Confidence            9999999999999 7999999999

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.90  E-value=7.3e-10  Score=112.80  Aligned_cols=131  Identities=18%  Similarity=0.203  Sum_probs=99.4

Q ss_pred             Ccccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecC-CCcccCCCCCCCCCccccccCCCCCCCCcccccc
Q 010325          289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK  365 (513)
Q Consensus       289 ~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~-G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~  365 (513)
                      .+..++++|..  ++.++++++++.++++.+.+++....||+++. +.++|++  +.+|++......  ...     ...
T Consensus        65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv--~~kDll~~~~~~--~~~-----~~l  135 (292)
T PRK15094         65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGIL--MAKDLLPFMRSD--AEA-----FSM  135 (292)
T ss_pred             CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEE--EHHHHHhHhhcc--CCc-----CCH
Confidence            34678899865  58899999999999999999999999999875 7899999  888887533110  000     112


Q ss_pred             ccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (513)
Q Consensus       366 ~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~  438 (513)
                      .......++++.++++.++.+.|+.........+     .    |+|+++||||++||+|+|+| ||.||+|.
T Consensus       136 ~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a~Vv-----D----e~G~viGiVTleDIle~ivG-ei~de~d~  198 (292)
T PRK15094        136 DKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVI-----D----EFGGVSGLVTIEDILELIVG-EIEDEYDE  198 (292)
T ss_pred             HHHcCCCcCcCCCCcHHHHHHHHHhcCCEEEEEE-----e----CCCCEEEEeEHHHHHHHHhC-CCcccccc
Confidence            2334467789999999888887775543332222     2    67899999999999999997 99999884

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.82  E-value=1.2e-08  Score=91.80  Aligned_cols=94  Identities=19%  Similarity=0.159  Sum_probs=77.2

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc---c------------ccccc----
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---P------------VSAVS----  297 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~---~------------v~dim----  297 (513)
                      ++..+++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++........   .            +.++|    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            678899999999 99999999999999999865 789999999999865422111   1            22344    


Q ss_pred             -----cccceeeCCCCCHHHHHHHHHhCCceEEEEEecCC
Q 010325          298 -----IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (513)
Q Consensus       298 -----~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G  332 (513)
                           .++++++++++++.++++.|.+++.+.+||+|+.+
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence                 35688999999999999999999999999999644

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.80  E-value=7.7e-09  Score=110.18  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=88.9

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIR  299 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~----~~~~~~v~dim~~  299 (513)
                      --.+++++|+.  ..+++++..++. ++.++|.+.|.|.+.+++++ +...|||+.+|+....    .....+|+++|..
T Consensus       147 ~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~  222 (610)
T COG2905         147 ILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS  222 (610)
T ss_pred             HHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhcc
Confidence            33457888885  778899999998 99999999999988888876 8899999999998642    2234789999999


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      |+++|..++-+.+|+-.|.++++|.+||.+
T Consensus       223 p~~svd~~~~~feAml~m~r~~I~hl~V~e  252 (610)
T COG2905         223 PVISVDRGDFLFEAMLMMLRNRIKHLPVTE  252 (610)
T ss_pred             CceeecCcchHHHHHHHHHHhCCceeeeec
Confidence            999999999999999999999999999985

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.71  E-value=3.3e-08  Score=109.23  Aligned_cols=118  Identities=16%  Similarity=0.179  Sum_probs=97.8

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----------------
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------  288 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----------------  288 (513)
                      ..+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+.....+                
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            4689999986  888999999999 99999999999999999865 799999999998741000                


Q ss_pred             --------------------------------------------------------------------------------
Q 010325          289 --------------------------------------------------------------------------------  288 (513)
Q Consensus       289 --------------------------------------------------------------------------------  288 (513)
                                                                                                      
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------Cccccccccc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCc
Q 010325          289 ---------------------TETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (513)
Q Consensus       289 ---------------------~~~~v~dim~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dil  346 (513)
                                           ...+++++|. ++++++++++++.++.+.|.+++.+.+||+|+.|.++|++  |..|++
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGii--t~~dl~  300 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVI--SRYHLL  300 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEE--EHHHhh
Confidence                                 0124566676 6788999999999999999999999999999888888888  666665


Q ss_pred             cc
Q 010325          347 KL  348 (513)
Q Consensus       347 e~  348 (513)
                      +.
T Consensus       301 ~~  302 (546)
T PRK14869        301 SP  302 (546)
T ss_pred             cc
Confidence            53

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.53  E-value=1.2e-07  Score=71.82  Aligned_cols=37  Identities=22%  Similarity=0.172  Sum_probs=34.5

Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      |+++|.++++++++++++.++++.|++++.+.+||+|
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d   37 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD   37 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence            3577888999999999999999999999999999999

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.52  E-value=2.7e-08  Score=95.68  Aligned_cols=163  Identities=17%  Similarity=0.207  Sum_probs=117.8

Q ss_pred             HHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (513)
Q Consensus       250 eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~V  327 (513)
                      |.+..++...+..+-= .+..+.+-|++...|+         .|+|+|+.  ...+++.+.++.+.+..+.+..-...||
T Consensus        36 eLl~liRdse~n~LiD-~dt~~mlEGvm~iadl---------~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPV  105 (293)
T COG4535          36 ELLELIRDSEQNELID-ADTLDMLEGVMDIADL---------RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV  105 (293)
T ss_pred             HHHHHHHHhhhccccC-hhHHHHHHHHHHHHHh---------hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCc
Confidence            6777777655443321 1233445566555544         46778763  4578999999999999999987777888


Q ss_pred             Eec-CCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccc
Q 010325          328 VKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS  406 (513)
Q Consensus       328 VDE-~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~  406 (513)
                      +.| ...+.||+  ..+|++.........       -.++..-..-++|+.++.+.-+.|.+..+...++..+.      
T Consensus       106 i~edkD~v~GIL--~AKDLL~~~~~~~~~-------F~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD------  170 (293)
T COG4535         106 ISEDKDHVEGIL--LAKDLLPFMRSDAEP-------FDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID------  170 (293)
T ss_pred             ccCCchhhhhhh--hHHHHHHHhcCCccc-------ccHHHhcccceecccchhHHHHHHHHHhhcCceEEEEe------
Confidence            854 78899999  788888764422111       12334455668999999998888888876665555554      


Q ss_pred             cccCCCccceecchHHHHHHHhcCccCCCCchhhh
Q 010325          407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD  441 (513)
Q Consensus       407 ~~~e~g~liGIITleDv~eel~~~ei~de~d~~~~  441 (513)
                         |+|.+-|+||.|||+|.++| ||.||+|+..+
T Consensus       171 ---EfGgVsGLVTIEDiLEqIVG-dIEDE~Deee~  201 (293)
T COG4535         171 ---EFGGVSGLVTIEDILEQIVG-DIEDEYDEEED  201 (293)
T ss_pred             ---ccCCeeeeEEHHHHHHHHhc-ccccccchhhh
Confidence               89999999999999999997 99999997653

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.44  E-value=2.5e-07  Score=70.06  Aligned_cols=54  Identities=26%  Similarity=0.508  Sum_probs=50.1

Q ss_pred             cccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       228 V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      |+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+||+.+
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence            5789997  899999999998 99999999999999999876 899999999999864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.26  E-value=3.5e-06  Score=88.88  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=74.6

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-----cc-cccc------ccccceee
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TP-VSAV------SIRRIPRV  304 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-----~~-v~di------m~~~~~~V  304 (513)
                      ++..++.++++. ++++.|.+.+++.+||++.+ ++.+|+++..|+.....+..     .. ++..      ...+++++
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588999999998 99999999999999999976 66699999999986433221     11 2221      12346789


Q ss_pred             CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          305 PSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       305 pe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++.++.+++..|..++.|.+.|||
T Consensus       316 ~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             eecchHHHHHHHHHhcCceEEEEEc
Confidence            9999999999999999999999999

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.21  E-value=2.8e-06  Score=87.61  Aligned_cols=150  Identities=11%  Similarity=0.126  Sum_probs=112.9

Q ss_pred             ccccHHHHHHHHHHhhhhhccCC-CCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCcee
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGG-ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g-~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~  263 (513)
                      ...++.|....+.++.--+--+. -=.+++..+++++..|+.--+.       +.+.++++.++. ++++.-..++++.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~-------~p~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFIN-------NPIVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccccc-------CCcccCCcccch-hhhhhccccccccc
Confidence            44566776666554321000001 1145678889999888764333       456688999998 99999999999999


Q ss_pred             eeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCC
Q 010325          264 PVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMT  341 (513)
Q Consensus       264 PV~~~~--~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T  341 (513)
                      ||.++.  ..+++|+|+.||+-.. .+....++++|....++.|...++.++=+.+++.+..-+||||+.|..+.++  +
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~--~  219 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML--S  219 (503)
T ss_pred             ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee--e
Confidence            999632  3689999999998754 4556789999988889999999999999999999999999999888888877  4


Q ss_pred             CCCC
Q 010325          342 DGKK  345 (513)
Q Consensus       342 ~~di  345 (513)
                      ..|+
T Consensus       220 rtDl  223 (503)
T KOG2550|consen  220 RTDL  223 (503)
T ss_pred             hhhh
Confidence            4444

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.19  E-value=1e-05  Score=86.02  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             cccccccccCcc-EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceee
Q 010325          226 KTAEEAMTPIES-TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (513)
Q Consensus       226 ~~V~dIMtPr~~-vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~V  304 (513)
                      .++.++|.+... .+....+.+.. ++++.|...+.++..|++++ ++++|+++.+++...... ...+.+.+.....+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence            567788853211 12333555666 89999999999999999865 899999999999765432 345666666777899


Q ss_pred             CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          305 PSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       305 pe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++.+++..|.+.... +||||
T Consensus       351 ~~~~~~~~~~~~~~~~~~~-~~v~~  374 (400)
T PRK10070        351 DAQTPLSELLSHVGQAPCA-VPVVD  374 (400)
T ss_pred             CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence            9999999999999987766 88999

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.09  E-value=3.5e-06  Score=90.90  Aligned_cols=104  Identities=22%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC----CcEEEEEEhhhhhccCC------C----
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP----KNIIGLLLVKSLLTVRP------E----  288 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~----d~ivGiV~~kDLl~~~~------~----  288 (513)
                      +.+++|+|+|.+  .+++++.-..+. ...+.++.+.|..+||+|+..    +++.|+|....|+....      +    
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            367789999997  999999999998 999999999999999998543    36889888777763110      0    


Q ss_pred             ----------------C----------------cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          289 ----------------T----------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       289 ----------------~----------------~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                                      .                -.++..+|...+++|+++|++..++..|++-+.+-..||+
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~  728 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP  728 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence                            0                0134444556678899999999999999999998889988

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.04  E-value=3.4e-05  Score=81.01  Aligned_cols=86  Identities=16%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHh
Q 010325          240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK  319 (513)
Q Consensus       240 ~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~  319 (513)
                      ....+.+.. ++++.+...+.....|++++ +++.|++..+++...... ...+.+.+.....+|++++++.+++..|.+
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVLK  330 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHHh
Confidence            445566766 88999999999999998865 789999999998765432 235666667777899999999999999999


Q ss_pred             CCceEEEEEe
Q 010325          320 GSSHMAAVVK  329 (513)
Q Consensus       320 ~~~~~a~VVD  329 (513)
                      .+.. +||+|
T Consensus       331 ~~~~-~~v~~  339 (363)
T TIGR01186       331 AGIK-VPVVD  339 (363)
T ss_pred             CCCC-EEEEC
Confidence            9988 99999

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.58  E-value=3.1e-05  Score=83.75  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~  302 (513)
                      ..+.+++++|+|  +++++++++++. ++++.|+++++..+||++++ ++++|+|+.+|++....+.  ..+++|....+
T Consensus       192 ~~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv  265 (449)
T TIGR00400       192 KPEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAV  265 (449)
T ss_pred             CCCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCC
Confidence            356789999987  788899999998 99999999999999999865 7899999999999765432  23566555544


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +..++..+.+.+..|.+++...++|.-
T Consensus       266 ~~~~~~~l~~~~~~~~~~R~~wL~v~~  292 (449)
T TIGR00400       266 KPLDDSYFDTSILVMAKNRIIWLLVLL  292 (449)
T ss_pred             CCCcchhhhchHHHHHHhccchHHHHH
Confidence            444567789999999999988888763

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.57  E-value=0.00011  Score=62.80  Aligned_cols=56  Identities=14%  Similarity=0.147  Sum_probs=49.5

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|..  .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            3468899975  678899999998 99999999999999999865 78999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.54  E-value=4.5e-05  Score=84.45  Aligned_cols=111  Identities=10%  Similarity=0.110  Sum_probs=76.3

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------------
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------  288 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------------  288 (513)
                      ...+|+++|+. .++++++++++++ ++.+.|.+++++.+||++++ ++++|+++.+|++.....               
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~  320 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE  320 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence            46789999982 3889999999999 99999999999999999865 899999999999864321               


Q ss_pred             -----------Ccccccccccccceee---CCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          289 -----------TETPVSAVSIRRIPRV---PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       289 -----------~~~~v~dim~~~~~~V---pe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                                 +..++.+++.+.+..+   +...+...+.+.|++.+....+++.. .-..||+
T Consensus       321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~ll~gIl  383 (546)
T PRK14869        321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-LLLAAIL  383 (546)
T ss_pred             chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-HHHHHHH
Confidence                       0012333333333322   33444556666677777666666542 1344555

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.47  E-value=0.00022  Score=60.60  Aligned_cols=59  Identities=22%  Similarity=0.336  Sum_probs=50.9

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ++...++.++|.+  ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus        55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            3445679999986  667899999998 99999999999999999864 89999999999974

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.43  E-value=0.00032  Score=60.79  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+++++|.+  ++..++.++++. ++++.|.++++..+||++++ ++++|+|+.+|+..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            679999986  777899999998 99999999999999999865 78999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.40  E-value=0.00049  Score=75.24  Aligned_cols=100  Identities=14%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccc-
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI-  301 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~-  301 (513)
                      ..+.+|+++|++..++++++++.++. ++++.|.+++..++||++++ ++++|+|+.+|++....... ...+- ..+. 
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~-a~~d~-~grL~  233 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPL-ELLDS-SKRYV  233 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChh-hhhhh-ccCee
Confidence            45678999999767899999999998 99999999999999999865 78999999999997542211 11121 1111 


Q ss_pred             --eeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325          302 --PRVPSDMPLYDILNEFQKGSSHMAAV  327 (513)
Q Consensus       302 --~~Vpe~~~l~d~L~~m~~~~~~~a~V  327 (513)
                        ..+..+ ...+..+.+.+.+.+...|
T Consensus       234 V~~av~~~-~~~~ra~~Lv~aGvd~i~v  260 (502)
T PRK07107        234 VGAGINTR-DYAERVPALVEAGADVLCI  260 (502)
T ss_pred             eeeccChh-hHHHHHHHHHHhCCCeEee
Confidence              123322 3456666677777777654

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.40  E-value=0.00019  Score=70.37  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++.++|.+++.++.+++++.++.+.|.+++.+-|||+|
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd  210 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD  210 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence            4678899999999999999999999999999999999999

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.00072  Score=73.59  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=73.3

Q ss_pred             cccccccccCc---cEEEEeCC-CCccHHHHHHHHhcCCceeeee-eCCCCcEEEEEEhhhhhccCCC------------
Q 010325          226 KTAEEAMTPIE---STFSLDVN-SKLDWEAMGKILARGHSRVPVY-SGNPKNIIGLLLVKSLLTVRPE------------  288 (513)
Q Consensus       226 ~~V~dIMtPr~---~vv~v~~d-~sl~~eal~~i~~~~~sr~PV~-~~~~d~ivGiV~~kDLl~~~~~------------  288 (513)
                      .-..++|.|+.   ....+..+ .+++ +....+.++.|+.+||+ +++.+.++|++..||+......            
T Consensus       543 t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~  621 (696)
T KOG0475|consen  543 TLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTS  621 (696)
T ss_pred             chhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecc
Confidence            34556666532   24445444 6887 88889999999999999 4455789999999998742110            


Q ss_pred             ---------------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEE
Q 010325          289 ---------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV  328 (513)
Q Consensus       289 ---------------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VV  328 (513)
                                     .....++++...+.+|...++.+-+++.|++-+..-..|.
T Consensus       622 ~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~  676 (696)
T KOG0475|consen  622 IYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT  676 (696)
T ss_pred             cccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc
Confidence                           0123556655667789999999999999998887777664

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.36  E-value=0.00025  Score=60.66  Aligned_cols=58  Identities=22%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|.+..++..+++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            457889998754567899999998 99999999999999999864 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00031  Score=60.34  Aligned_cols=57  Identities=23%  Similarity=0.317  Sum_probs=49.8

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.+++++|..  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            34568889975  778899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.32  E-value=0.00033  Score=60.50  Aligned_cols=61  Identities=16%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC--CcEEEEEEhhhhhc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP--KNIIGLLLVKSLLT  284 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~--d~ivGiV~~kDLl~  284 (513)
                      +.+.+++++|+.-.++.+++.++++. ++++.|.++++.++||++++.  ++++|+|+.+|++.
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            34667888997323688999999998 999999999999999998653  58999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.31  E-value=0.00028  Score=61.16  Aligned_cols=39  Identities=23%  Similarity=0.235  Sum_probs=35.9

Q ss_pred             ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd   96 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD   96 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence            458888888889999999999999999999999999999

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.22  E-value=0.00088  Score=72.78  Aligned_cols=95  Identities=12%  Similarity=0.163  Sum_probs=72.0

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccc----cccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVS----IRRI  301 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim----~~~~  301 (513)
                      ..++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+||+......  +..+..    ....
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa  219 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA  219 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence            569999996  789999999998 99999999999999999865 7899999999999754322  222211    1112


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                        +.......+.+..+.+.+... +|+|
T Consensus       220 --v~~~~~~~~ra~~Lv~aGVd~-i~~D  244 (475)
T TIGR01303       220 --VGINGDVGGKAKALLDAGVDV-LVID  244 (475)
T ss_pred             --eeeCccHHHHHHHHHHhCCCE-EEEe
Confidence              333456778888888888777 4667

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.18  E-value=0.00059  Score=58.18  Aligned_cols=56  Identities=20%  Similarity=0.401  Sum_probs=48.9

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|.+  .+.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            3468889975  677899999998 99999999999999999865 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.16  E-value=0.00061  Score=58.37  Aligned_cols=58  Identities=21%  Similarity=0.399  Sum_probs=51.1

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.+.++.++|.+  ++.+++.++++. ++++.+.+.+.+++||++++ ++++|+|+.+|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            356678999976  788899999998 99999999999999999864 79999999999974

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.15  E-value=0.00098  Score=72.52  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=72.6

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccc----ccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAV----SIRRI  301 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~di----m~~~~  301 (513)
                      ..++++|++  ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++......  +..+.    +....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa  221 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA  221 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence            569999986  889999999998 99999999999999999865 7999999999999754322  22111    11222


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEec
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE  330 (513)
                        +.-.....+.+..|.+.+... +++|-
T Consensus       222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D~  247 (479)
T PRK07807        222 --VGINGDVAAKARALLEAGVDV-LVVDT  247 (479)
T ss_pred             --hccChhHHHHHHHHHHhCCCE-EEEec
Confidence              222334678888888888888 56773

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.12  E-value=0.0008  Score=56.76  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=41.9

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ++++.+++++. ++++.|.+++..++||++++.++++|+++.+|++.
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999998 99999999999999999865478999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.07  E-value=0.00087  Score=56.66  Aligned_cols=55  Identities=22%  Similarity=0.475  Sum_probs=49.0

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.+++++|.+  ++.+++++.++. ++++.+.+.+++++||+++  ++++|+|+.+|++.
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            4578999976  788899999998 9999999999999999986  79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.07  E-value=0.0012  Score=55.32  Aligned_cols=54  Identities=15%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ++.++|.+  .+..++.++++. ++++.|.+++++.+||++++ ++++|+++.+|++.
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            47888976  566789999998 99999999999999999865 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.07  E-value=0.00089  Score=56.20  Aligned_cols=56  Identities=21%  Similarity=0.385  Sum_probs=48.8

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +..++++|.+  .+.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3568899975  577789999998 99999999999999999865 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.06  E-value=0.00086  Score=57.98  Aligned_cols=58  Identities=19%  Similarity=0.434  Sum_probs=51.1

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ....+++++|.+  .+.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|++.
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            456678999975  788899999998 99999999999999999854 78999999999974

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.06  E-value=0.0016  Score=71.18  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=78.1

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc---cccccccccc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---PVSAVSIRRI  301 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~---~v~dim~~~~  301 (513)
                      +.+++++|++ .++++++.+.++. ++++.|.+++++.+||++++ ++++|+|+.+|++........   .-..+.....
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa  222 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA  222 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence            4578999983 3788899999998 99999999999999999876 799999999999865322111   1112223333


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEec-CCCcccCC
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLP  338 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE-~G~~~Giv  338 (513)
                      +.+.++  -.+.++.|.+.+.+++ |+|. +|...+++
T Consensus       223 i~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl  257 (486)
T PRK05567        223 VGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVL  257 (486)
T ss_pred             cccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHH
Confidence            444442  3788888889998965 5553 67766665

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.05  E-value=0.00087  Score=56.85  Aligned_cols=55  Identities=18%  Similarity=0.389  Sum_probs=48.4

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|.+  ++.+++.++++. ++++.|.+++..++||+++  ++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4578899965  677899999998 9999999999999999974  78999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.02  E-value=0.00066  Score=59.42  Aligned_cols=60  Identities=23%  Similarity=0.357  Sum_probs=47.2

Q ss_pred             cccccccccccCccEEEEe----CCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLD----VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~----~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.+++++|++...++.++    +++++. ++++.|.+++.+++||++++.++++|+|+.+|++.
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4567899997532333443    578888 99999999999999999864358999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.02  E-value=0.00034  Score=69.95  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=77.6

Q ss_pred             cccccccccc-ceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCcccccccccc
Q 010325          291 TPVSAVSIRR-IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK  369 (513)
Q Consensus       291 ~~v~dim~~~-~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~  369 (513)
                      .+++++|.++ ++.+++++++.++++.|.+.+...++|+|+.|+..|++  |..|+.+.....   .....|....  +.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Giv--t~~dl~~~~~~~---~~~~~~v~~i--m~  227 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVF--TDGDLRRALLGG---GSLKSEVRDF--MT  227 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEE--EcHHHHHHHhcC---CcccCcHHHh--CC
Confidence            4577888777 88999999999999999998899999999999999999  888887754321   1112222222  23


Q ss_pred             CCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecc
Q 010325          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIIT  419 (513)
Q Consensus       370 ~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIIT  419 (513)
                      .....++.+.++.+..+.+...-.      ..+++..   ++|+++|+|+
T Consensus       228 ~~~~~v~~~~~l~~a~~~m~~~~~------~~lpVvd---~~g~l~GvI~  268 (268)
T TIGR00393       228 LGPKTFKLDALLLEALEFLERRKI------TSLVVVD---DHNKVLGVLH  268 (268)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCC------cEEEEEC---CCCeEEEEEC
Confidence            345578888887766665554321      1122210   3578999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.01  E-value=0.0012  Score=56.44  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=47.6

Q ss_pred             ccccccccccCccEEEEeCC--CCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVN--SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d--~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|.+  ++.++.++  .++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4578889975  67778776  6777 99999999999999999865 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.01  E-value=0.0012  Score=57.35  Aligned_cols=52  Identities=23%  Similarity=0.254  Sum_probs=45.5

Q ss_pred             cccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (513)
Q Consensus       228 V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl  283 (513)
                      +.++|.+  ++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            3456764  788899999998 99999999999999999865 7899999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=96.99  E-value=0.0011  Score=56.06  Aligned_cols=57  Identities=19%  Similarity=0.404  Sum_probs=50.0

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  ++.+++.+.++. ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            35578999975  678899999998 99999999999999999854 78999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=96.98  E-value=0.00059  Score=68.22  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcc
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile  347 (513)
                      +....+||.+++++|+++++++++.++|++++....||+||+-..+|||  |..|+++
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiV--t~~dl~~  299 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIV--TQRDLLK  299 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeee--eHHHHhh
Confidence            3456789999999999999999999999999999999999877777777  6666544

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.98  E-value=0.0012  Score=56.53  Aligned_cols=56  Identities=16%  Similarity=0.262  Sum_probs=49.4

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|..  ++.+++.++++. ++++.|.+++...+||+++  ++++|+|+..|++.
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            44678899964  788999999998 9999999999999999976  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.97  E-value=0.0024  Score=69.91  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccc--
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI--  301 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~--  301 (513)
                      .+.+++++|+|+.++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|++....... ...|-.-+-.  
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~-a~~D~~GrL~Vg  233 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPN-ASLDSNGQLLVG  233 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCch-hhhccCCCEEEE
Confidence            3567999999877899999999998 99999999999999999865 78999999999997542111 0111000101  


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAV  327 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~V  327 (513)
                      ..|.......+.++.+.+.+..++.|
T Consensus       234 aavg~~~~~~~~~~~l~~ag~d~i~i  259 (495)
T PTZ00314        234 AAISTRPEDIERAAALIEAGVDVLVV  259 (495)
T ss_pred             EEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            12433333466667777888777644

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=96.97  E-value=0.001  Score=68.78  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+.+|+++|++  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|++.+
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456789999986  788999999998 9999999999999999974  689999999999864

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.96  E-value=0.0015  Score=45.82  Aligned_cols=29  Identities=21%  Similarity=0.255  Sum_probs=26.8

Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++++++++.++++.|++++.+.++|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   30 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD   30 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence            46789999999999999999999999998

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=96.95  E-value=0.0022  Score=54.55  Aligned_cols=54  Identities=22%  Similarity=0.485  Sum_probs=47.8

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHh-cCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILA-RGHSRVPVYSGNPKNIIGLLLVKSLL  283 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~-~~~sr~PV~~~~~d~ivGiV~~kDLl  283 (513)
                      .++++|+.  .++++.++.++. ++.+.|.+ +++.++||++++..+++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            69999986  788999999998 99999999 79999999987522999999999974

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.94  E-value=0.0013  Score=55.74  Aligned_cols=57  Identities=23%  Similarity=0.383  Sum_probs=49.8

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..++.++|.+  ++.++++++++. ++++.|.+.+++.+||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4678999986  678899999998 99999999999999999752378999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.94  E-value=0.0014  Score=55.63  Aligned_cols=57  Identities=19%  Similarity=0.345  Sum_probs=49.3

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  ++.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            44568888975  788899999998 99999999999999999865 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=96.93  E-value=0.0015  Score=55.81  Aligned_cols=56  Identities=25%  Similarity=0.532  Sum_probs=48.1

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~-~d~ivGiV~~kDLl~  284 (513)
                      .++.++|.+  ++..++.++++. ++++.|.+++..++||++++ .++++|+|+.+|++.
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            347788875  778899999998 99999999999999999764 268999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.92  E-value=0.0013  Score=55.82  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=48.6

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .++.++|.+  ...+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            578899975  677899999998 99999999999999999865 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.92  E-value=0.0015  Score=55.42  Aligned_cols=55  Identities=24%  Similarity=0.448  Sum_probs=48.4

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|.+  ++.++.+++++. ++++.|.+++..++||+++  ++++|+|+..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            4568888874  788899999998 9999999999999999986  78999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.90  E-value=0.0027  Score=69.65  Aligned_cols=102  Identities=14%  Similarity=0.201  Sum_probs=72.9

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRI  301 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~--~~v~dim~~~~  301 (513)
                      .+.+|.++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.......  .+..|- ..+.
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~-~~~l  237 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGK-DGKL  237 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCC-CCCE
Confidence            4678999999865689999999998 99999999999999999865 78999999999997643211  111111 1111


Q ss_pred             e---eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 P---RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~---~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .   .|.......+-.+.+.+.+..++ ++|
T Consensus       238 ~vgaavg~~~~~~~r~~~l~~ag~d~i-~iD  267 (505)
T PLN02274        238 LVGAAIGTRESDKERLEHLVKAGVDVV-VLD  267 (505)
T ss_pred             EEEEEEcCCccHHHHHHHHHHcCCCEE-EEe
Confidence            1   24433344566667777787775 556

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.89  E-value=0.0015  Score=58.29  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=49.7

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.+++++|++  ++..+++++++. ++++.+.+.++..+||+++  ++++|+|+.+|++.
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            45679999986  677899999998 9999999999999999975  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.89  E-value=0.0014  Score=57.69  Aligned_cols=56  Identities=18%  Similarity=0.394  Sum_probs=49.4

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ...++.++|.+  ++..++.++++. ++++.|.+.+..++||+++  ++++|+++.+|++.
T Consensus        76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            34478999975  788899999998 9999999999999999986  89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.88  E-value=0.0012  Score=56.79  Aligned_cols=57  Identities=12%  Similarity=0.353  Sum_probs=50.4

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.+.++.++|.+  ++.+++.++++. ++++.+.+.+.+.+||+++  ++++|+++.+|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            456678899975  788899999998 9999999999999999985  79999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.88  E-value=0.0016  Score=55.15  Aligned_cols=56  Identities=20%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..++.++|.+  ++.++..++++. ++++.+.+.+..++||++++ ++++|+++.+|++.
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            3458899975  677899999998 99999999999999999764 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=96.86  E-value=0.002  Score=54.24  Aligned_cols=54  Identities=15%  Similarity=0.222  Sum_probs=47.2

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .++.++|.+  +..+++.+.++. ++++.|.+++..++||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            357788875  677899999998 9999999999999999973  79999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.85  E-value=0.0015  Score=56.48  Aligned_cols=57  Identities=16%  Similarity=0.378  Sum_probs=50.0

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  .+.+++.++++. ++++.+.+.+...+||.+++ ++++|+|+.+|++.
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            45578889875  788999999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=96.84  E-value=0.0018  Score=66.66  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+++++|++  ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.+
T Consensus       262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            4568999986  788899999998 99999999999999999865 689999999999864

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=96.83  E-value=0.0019  Score=54.75  Aligned_cols=57  Identities=14%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+++++|.+  ++..++.++++. ++++.+.+++...+||++++ ++++|+|+..|++..
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4568899976  678899999998 99999999999999999865 789999999999853

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.82  E-value=0.0017  Score=55.77  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..+.++.++|.+  .+.+++.+++++ ++++.+.+.+++.+||+++  ++++|+++.+|++.
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456778999976  778899999998 9999999999999999975  78999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.82  E-value=0.0019  Score=54.73  Aligned_cols=56  Identities=23%  Similarity=0.261  Sum_probs=49.3

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.+++++|.+  ++..+++++++. ++++.|.+++..++||+++  ++++|+++.+|++.
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            45578899975  788899999998 9999999999999999975  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.80  E-value=0.0022  Score=53.93  Aligned_cols=56  Identities=27%  Similarity=0.452  Sum_probs=46.4

Q ss_pred             ccccccccccCccEEEEeC-CCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDV-NSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~-d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|.+  ++..+.. ++++. ++++.+.+.++.++||++++ ++++|+|+.+|++.
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            4578899964  3444556 89998 99999999999999999864 78999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=96.80  E-value=0.0017  Score=57.46  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=50.5

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..+.+++++|.+  ++..++.++++. ++++.|.+.+.+++||++ + ++++|+++.+|++.
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            456789999975  688899999998 999999999999999998 4 89999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.79  E-value=0.0022  Score=53.85  Aligned_cols=55  Identities=29%  Similarity=0.563  Sum_probs=48.1

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..+.++|.+  ++.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            457888875  678899999998 99999999999999999865 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=96.78  E-value=0.0023  Score=54.10  Aligned_cols=56  Identities=18%  Similarity=0.361  Sum_probs=49.2

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  .+.+++.++++. ++++.|.+.+.+.+||.+ + ++++|+|+.+|++.
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678899975  788899999998 999999999999999998 3 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.77  E-value=0.0025  Score=53.66  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=48.0

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..+.++|.+  ++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            457788875  788899999998 99999999999999999764 78999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.75  E-value=0.0024  Score=55.00  Aligned_cols=58  Identities=16%  Similarity=0.305  Sum_probs=50.1

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..+.++.++|..  ++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus        64 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          64 ERDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             ccCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            356678888864  778899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.75  E-value=0.0022  Score=53.61  Aligned_cols=54  Identities=19%  Similarity=0.351  Sum_probs=48.3

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl  283 (513)
                      +..+.++|.+  +..+++.++++. ++++.+.+++...+||+++  ++++|+++.+|++
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence            4568889976  788899999998 9999999999999999985  7999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.75  E-value=0.0023  Score=54.20  Aligned_cols=56  Identities=23%  Similarity=0.464  Sum_probs=48.8

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  ++..+.+++++. ++++.+.+++...+||++++  +++|+++.+|++.
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence            45578899975  788899999998 99999999999999999863  8999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.72  E-value=0.0021  Score=54.61  Aligned_cols=55  Identities=16%  Similarity=0.303  Sum_probs=48.7

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +..+.++|.+  ++..++.++++. ++++.+.+++..++||+++  ++++|+++.+|++.
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            4578899975  677899999998 9999999999999999986  79999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.72  E-value=0.0023  Score=55.16  Aligned_cols=57  Identities=19%  Similarity=0.403  Sum_probs=49.8

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  ++..++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            45678889964  678899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.70  E-value=0.0031  Score=54.43  Aligned_cols=52  Identities=15%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             ccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       229 ~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +++|..  ++.++..++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~  119 (120)
T cd04641          68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ  119 (120)
T ss_pred             cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence            445543  677899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.70  E-value=0.0025  Score=54.48  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=45.9

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..++++|.+....+..+.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            45889997633333334499998 99999999999999999865 78999999999863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.68  E-value=0.003  Score=53.20  Aligned_cols=57  Identities=19%  Similarity=0.321  Sum_probs=49.3

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  ++..++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            35668889875  778899999998 99999999999999999865 78999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.66  E-value=0.0037  Score=56.05  Aligned_cols=30  Identities=20%  Similarity=0.221  Sum_probs=27.5

Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .+.++++++++.++++.|.+++.+.+||+|
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD   31 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD   31 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence            457899999999999999999999999999

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.64  E-value=0.0034  Score=52.46  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=28.1

Q ss_pred             ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.+++++++.++++.|.+++...+||+|
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d   31 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLD   31 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEEC
Confidence            3567899999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.64  E-value=0.0022  Score=54.65  Aligned_cols=55  Identities=13%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.+++++|.+  .+.+++.++++. ++++.|.+.+  .+||++++ ++++|+++.+|++.
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~  115 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK  115 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence            46679999986  678899999998 9999998755  59999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.62  E-value=0.0029  Score=53.53  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=48.2

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..+.++|..  ++..++.+.++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            468888864  788899999998 99999999999999999765 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.58  E-value=0.0033  Score=53.18  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=48.6

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++.++|..  ++.++++++++. ++++.+.+++.+++||+++  ++++|+++.+|++.
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3568888864  788899999998 9999999999999999986  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=96.53  E-value=0.0083  Score=63.53  Aligned_cols=105  Identities=19%  Similarity=0.213  Sum_probs=79.4

Q ss_pred             ccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----------ccccccc---ccc
Q 010325          233 TPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------ETPVSAV---SIR  299 (513)
Q Consensus       233 tPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~----------~~~v~di---m~~  299 (513)
                      +++...+++.+..++- ++...+.++++.|+||.+.+.++++.+++.+-++......          ..++.|.   ...
T Consensus       159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~  237 (381)
T KOG1764|consen  159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS  237 (381)
T ss_pred             ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence            3333447888888876 8888999999999999985557999999999998643211          1122222   123


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                      .+..+.+++++.++++.|...+..-+||||++|+.+|..
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~  276 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNY  276 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecce
Confidence            577899999999999999999999999999655554444

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.51  E-value=0.0051  Score=42.95  Aligned_cols=46  Identities=17%  Similarity=0.457  Sum_probs=39.8

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+++.++++. ++++.+.+.+++.+||++++ ++++|+++.+++...
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence            35678888988 99999999999999999865 789999999998753

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.50  E-value=0.0036  Score=54.63  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=49.6

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~-~~d~ivGiV~~kDLl~  284 (513)
                      .+.+++++|++  ++++++++.++. ++++.|.+.++..+||.++ +.++++|+|+.+|++.
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45678899975  788899999998 9999999999999999853 4478999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.48  E-value=0.0069  Score=51.05  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=46.7

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++|.+  ++.+++.+++++ ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            47788864  677899999998 99999999999999999865 78999999999863

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.48  E-value=0.0037  Score=53.91  Aligned_cols=55  Identities=29%  Similarity=0.448  Sum_probs=48.2

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..++++|.+  +++.++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            357888864  788899999998 99999999999999999765 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.46  E-value=0.0079  Score=52.75  Aligned_cols=31  Identities=10%  Similarity=0.076  Sum_probs=28.5

Q ss_pred             ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++.++++++++.++++.|++++...+||+|
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd   32 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD   32 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            5678899999999999999999989999999

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.45  E-value=0.0067  Score=51.32  Aligned_cols=56  Identities=16%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +..++++|.+  ++.+++.++++. ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            3467888875  688899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.31  E-value=0.0065  Score=51.23  Aligned_cols=55  Identities=16%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      ..+.++|.+  ++..++.+.++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            457788864  778899999998 99999999999999999865 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.29  E-value=0.0076  Score=52.55  Aligned_cols=51  Identities=20%  Similarity=0.285  Sum_probs=44.3

Q ss_pred             cccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       230 dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+..|++.
T Consensus        75 ~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            45543  678899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.28  E-value=0.0063  Score=67.91  Aligned_cols=59  Identities=24%  Similarity=0.312  Sum_probs=51.6

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEhhhhhccC
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLTVR  286 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~-d~ivGiV~~kDLl~~~  286 (513)
                      +.+++|+|++  ++.+++++++++ ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999986  778899999998 999999999999999998653 4799999999998653

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.22  E-value=0.0051  Score=56.46  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=34.2

Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ...+|.+|+++|.+++++.++++.|++++..-+||++
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~  103 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE  103 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence            4456889999999999999999999999999999998

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.18  E-value=0.0081  Score=50.98  Aligned_cols=49  Identities=20%  Similarity=0.364  Sum_probs=43.6

Q ss_pred             ccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          231 AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       231 IMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +|.+  ++.+++.++++. ++++.|.+++...+||+++  ++++|+|+.+|++.
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence            7875  677899999998 9999999999999999953  78999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.16  E-value=0.0074  Score=50.97  Aligned_cols=53  Identities=11%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++|.   .+.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus        58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            4556664   457789999998 99999999999999999865 78999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.11  E-value=0.0078  Score=54.06  Aligned_cols=56  Identities=13%  Similarity=0.344  Sum_probs=49.5

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++.++|.+  ++.+++.++++. ++++.+.+.+++++||+++  ++++|+++.+|++.
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            45678899976  788899999998 9999999999999999986  78999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.08  E-value=0.011  Score=63.83  Aligned_cols=39  Identities=13%  Similarity=0.083  Sum_probs=36.0

Q ss_pred             ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .+++++|.+++.++++++++.++++.|.+++...+||+|
T Consensus       335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd  373 (454)
T TIGR01137       335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT  373 (454)
T ss_pred             CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            578898888999999999999999999999988999999

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.06  E-value=0.0085  Score=51.26  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=47.0

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCC---ceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH---SRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~---sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.+++++|.+  ++..+++++++. ++++.|.+++.   ...||++++ ++++|+|+.+|++.
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence            45679999976  788899999998 99999988875   345677655 89999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.05  E-value=0.015  Score=59.44  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=73.4

Q ss_pred             HHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccc
Q 010325          213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETP  292 (513)
Q Consensus       213 E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~  292 (513)
                      -++-++++=...=.++++||.+ .+......+......+++.+...+.+.+-+++ ..++.+|+++..++...       
T Consensus       261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~-------  331 (386)
T COG4175         261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA-------  331 (386)
T ss_pred             HHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------
Confidence            4566777777777899999985 23222222222211567777777766666666 44679999999877643       


Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                         .+..++..|+.++++.+.+....+...+++ |+|
T Consensus       332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd  364 (386)
T COG4175         332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD  364 (386)
T ss_pred             ---cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence               245677889999999999999999988876 667

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=95.92  E-value=0.011  Score=64.08  Aligned_cols=69  Identities=23%  Similarity=0.289  Sum_probs=59.2

Q ss_pred             HHHHHHHhhc---CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          213 ETTIISGALD---LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       213 E~~~I~~vl~---l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ++++...++.   =...+|+++||-  ++++++.++.+= ||+-.|.+.+..++||.++  ++++|+|+..|++...
T Consensus       198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~  269 (610)
T COG2905         198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLF  269 (610)
T ss_pred             hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhh
Confidence            4556666665   256789999995  999999999986 9999999999999999986  7999999999999754

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.91  E-value=0.019  Score=60.85  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=62.5

Q ss_pred             HHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-Cccccc
Q 010325          216 IISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-TETPVS  294 (513)
Q Consensus       216 ~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-~~~~v~  294 (513)
                      .+..+-...=.+++++|.|...+.  ..+.+   .++   .+++.+.+.|+++      |+++..+....... .+..+.
T Consensus       264 ~~~~~~~~~~l~a~~~m~~~~~~~--~~~~~---~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  329 (382)
T TIGR03415       264 FVAHTNPLNVLTARSLMRPLTDLE--HVDGG---WCV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE  329 (382)
T ss_pred             HhcccCcccceeHHHHhccccccc--ccCcc---hhh---hhcccceeEeecc------ceecccchHhHhhcccccchh
Confidence            334444456678999997633322  22222   222   3378888888864      88887776543221 223455


Q ss_pred             ccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       295 dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      + ......+|++++++.+++..+.+.... ++|+|
T Consensus       330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  362 (382)
T TIGR03415       330 S-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVE  362 (382)
T ss_pred             h-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence            6 467788999999999999988887765 44667

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.67  E-value=0.017  Score=48.37  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=45.7

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      .+.++|.+  ++.+++.++++. ++++.+.+++...+||+++  ++++|+++.+|++.
T Consensus        53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            46677864  677789999998 9999999999999999985  68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.55  E-value=0.033  Score=46.01  Aligned_cols=53  Identities=23%  Similarity=0.460  Sum_probs=46.1

Q ss_pred             cccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       228 V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.++|.+  ++.++..+.++. ++++.+.+.+.+.+||++++ ++++|+++.+|++.
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            5667764  677888999998 99999999999999999876 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=95.53  E-value=0.016  Score=48.44  Aligned_cols=54  Identities=17%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +..+.++|.+  ++.+++.++++. ++.+.+.+ . ...||++++ ++++|+++.+|++.
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence            3568888865  677899999998 98888887 3 347888765 78999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=95.52  E-value=0.017  Score=62.68  Aligned_cols=60  Identities=25%  Similarity=0.426  Sum_probs=53.2

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      .+.+++++|++ .++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|++...
T Consensus       141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence            35679999984 4788999999998 99999999999999999865 8899999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=94.11  E-value=0.064  Score=55.25  Aligned_cols=59  Identities=17%  Similarity=0.348  Sum_probs=52.9

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ++.++..+||.  ..+++.+.+++. .+.+.|.-.++.-+||++++ .+++|+|+.+|++..+
T Consensus       247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l  305 (432)
T COG4109         247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL  305 (432)
T ss_pred             CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence            66788999996  788999999998 99999999999999999876 7999999999999754

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=93.51  E-value=0.073  Score=57.48  Aligned_cols=60  Identities=15%  Similarity=0.269  Sum_probs=53.6

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      .-.+..++++|.+  +++++.+++..+ ++.+.+.+++....||++++ ++++|+++..|++..
T Consensus       192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidv  251 (451)
T COG2239         192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDV  251 (451)
T ss_pred             CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHH
Confidence            4477789999997  589999999988 99999999999999999876 899999999999853

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=90.73  E-value=0.44  Score=50.28  Aligned_cols=56  Identities=21%  Similarity=0.453  Sum_probs=48.8

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+.|.+  ++.++++++++. +++..+.++++. +||++++ ++++|+|+..+++...
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDAL  357 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHH
Confidence            457888875  677899999998 999999999999 9999865 8999999999998654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=90.43  E-value=0.26  Score=51.75  Aligned_cols=60  Identities=15%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      .=..+.+.++||++.  ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-++...||.+.
T Consensus       167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN  226 (503)
T ss_pred             hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence            445677899999965  7788899998 99999999999999999876 999999999999864

>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters

Probab=86.64  E-value=0.17  Score=41.39  Aligned_cols=47  Identities=21%  Similarity=0.164  Sum_probs=38.9

Q ss_pred             cccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cc
Q 010325          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      +...+.|.++++++++++++.+...++.+ +.|++|+++ .+++++. |+
T Consensus         2 ~~~~~~~~v~G~~~l~~l~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge   51 (81)
T PF03471_consen    2 KLDDGTYIVSGSTPLDDLNELLGLDLPEEDYDTLGGLILEQLGRIPEVGE   51 (81)
T ss_dssp             EETTSEEEEETTSBHHHHHHHHTS-TTTTTTSBHHHHHHHHHTSS--TTS
T ss_pred             eEcCCEEEEEecCCHHHHHHHHCcCCCccchhhHHHHHHHHcCCCCCCCe
Confidence            35678899999999999999999999987 999999999 7777776 55

This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=86.55  E-value=1.2  Score=47.66  Aligned_cols=58  Identities=17%  Similarity=0.332  Sum_probs=48.2

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~  287 (513)
                      +..+.++|.+  +..+++.++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus       336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            3467778865  677899999998 999999987766 9999865 89999999999987643

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=86.28  E-value=2.9  Score=42.01  Aligned_cols=82  Identities=17%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----------------ccccccccccc
Q 010325          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----------------ETPVSAVSIRR  300 (513)
Q Consensus       238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----------------~~~v~dim~~~  300 (513)
                      ++.|..|.  + ||+++-     +|+-|.++  ++++=+=+..+++..+.++                 ...+.+.+...
T Consensus       189 ivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         189 IVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            44444443  4 666542     46777764  6777777777776543211                 01222222211


Q ss_pred             c----eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 I----PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~----~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .    -.++......+++..+...+...++|+|
T Consensus       259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd  291 (309)
T COG1125         259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD  291 (309)
T ss_pred             ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence            1    1245555666788888889999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	513
4hg0_A	292	Crystal Structure Of Magnesium And Cobalt Efflux Pr		1e-06
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		3e-06
3lhh_A	172	The Crystal Structure Of Cbs Domain Protein From Sh		9e-06

>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein Corc, Northeast Structural Genomics Consortium (nesg) Target Er40 Length = 292

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 189 RAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 248
           R +L AL+    +++G+   +  D    + G  D+ ++   +   P     +L  N  LD
Sbjct: 34  RDELLALI----RDSGQNDLIDEDTRDXLEGVXDIADQRVRDIXIPRSQXITLKRNQTLD 89
Query: 249 WEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----V 304
            E +  I+   HSR PV S +  +I G+L  K LL   P   +   A S  ++ R    V
Sbjct: 90  -ECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL---PFXRSDAEAFSXDKVLRQAVVV 145
Query: 305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD 342
           P    +   L EF+    H A V+   G    L  + D
Sbjct: 146 PESKRVDRXLKEFRSQRYHXAIVIDEFGGVSGLVTIED 183

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           E+T  +   P      LD++  L  + +  I+   HSR PVY  +  NIIG+LL K LL 
Sbjct: 4   ERTVADIXVPRSRXDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR 62
Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVVKAKG 332
              E      A+ IR + R    +P    L  +L EF+   +H+A V+   G
Sbjct: 63  YXLE-----PALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHG 109

>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From Shewanella Oneidensis Mr-1 Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 1/142 (0%)
Query: 201 QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH 260
           QE    G + H+E   +     L E+T      P      LD+N  LD   +  +    H
Sbjct: 17  QEGSSAGVIEHNEHAXVKNVFRLDERTISSLXVPRSDIVFLDLNLPLDAN-LRTVXQSPH 75
Query: 261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKG 320
           SR PV   N  + +G++  K LL+     E       ++    VP+ +   ++L  F+  
Sbjct: 76  SRFPVCRNNVDDXVGIISAKQLLSESIAGERLELVDLVKNCNFVPNSLSGXELLEHFRTT 135
Query: 321 SSHMAAVVKAKGKSKTLPPMTD 342
            S    VV   G  K L  + D
Sbjct: 136 GSQXVFVVDEYGDLKGLVTLQD 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	513
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	1e-27
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	1e-26
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	6e-26
3ocm_A	173	Putative membrane protein; structural genomics, PS	2e-25
3oco_A	153	Hemolysin-like protein containing CBS domains; str	5e-24
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	1e-22
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	2e-21
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	3e-21
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	1e-20
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	9e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	6e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-04

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  107 bits (271), Expect = 1e-27
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 5/148 (3%)

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GH +    +  ++A++    QE    G + H+E  ++     L E+T    M P      
Sbjct: 1   GHLDDNVTQEDIQAML----QEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVF 56

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LD+N  LD   +  ++   HSR PV   N  +++G++  K LL+     E       ++ 
Sbjct: 57  LDLNLPLD-ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKN 115

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVV 328
              VP+ +   ++L  F+   S M  VV
Sbjct: 116 CNFVPNSLSGMELLEHFRTTGSQMVFVV 143

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  104 bits (263), Expect = 1e-26
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 189 RAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 248
              +  L+    ++A +      D    +   LD ++    +AM        L  N  ++
Sbjct: 5   AEDVLNLL----RQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 249 WEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----V 304
                 ++   HSR PV   +   ++G+L  K LL      E       ++ I R    V
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQ----FHLKSILRPAVFV 115

Query: 305 PSDMPLYDILNEFQKGSSHMAAVV 328
           P    L  +L EF++  +HMA V+
Sbjct: 116 PEGKSLTALLKEFREQRNHMAIVI 139

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  102 bits (256), Expect = 6e-26
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
             G +   E  ++    +  EK   E M P      +  +   + + +  +   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
           V   N  +I+G + ++ L   +           +R I  +  ++ +   L   +K    +
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEEILRDIIYISENLTIDKALERIRKEKLQL 120

Query: 325 AAVV 328
           A VV
Sbjct: 121 AIVV 124

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  101 bits (254), Expect = 2e-25
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 202 EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS 261
                     +E  ++SG L L E++    MTP      ++++         ++ A  HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 262 RVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGS 321
             PV  G+   ++G+   K L+              +R    V   + +  +++  ++  
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNR-LRDPIIVHESIGILRLMDTLKRSR 129

Query: 322 SHMAAVV 328
             +  V 
Sbjct: 130 GQLVLVA 136

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 97.1 bits (243), Expect = 5e-24
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267
               ++   +  A ++ +K A + M    S   +DV+  +  +A+   L   +SR PV +
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 268 GNPK-NIIGLLLVKSLLT-VRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMA 325
            N K  IIG      ++   R + +  +S + +R I  VP +M + D++ E       MA
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKISTI-MRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 326 AVV 328
            V+
Sbjct: 120 IVI 122

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 92.5 bits (231), Expect = 1e-22
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKS 281
           +  +    + MTP    F +D    ++ E + K      SR  VYS    NIIG +    
Sbjct: 2   NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLE 60

Query: 282 LLTVRPETETPVSAVSIRRIPR-VPSDMPLYDILNEFQKGSSHMAAVV 328
           L  ++          ++ R  + V ++  L  + ++       +A VV
Sbjct: 61  LFKMQQSGSGQKQLGAVMRPIQVVLNNTALPKVFDQMMTHRLQLALVV 108

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 89.0 bits (222), Expect = 2e-21
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL 282
             E+T  + M P      LD++  L  + +  I+   HSR PVY  +  NIIG+LL K L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV 328
           L    E    + ++ +R    +P    L  +L EF+   +H+A V+
Sbjct: 61  LRYMLEPALDIRSL-VRPAVFIPEVKRLNVLLREFRASRNHLAIVI 105

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 88.6 bits (221), Expect = 3e-21
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           + +  + M P      +D+N       + ++    H R+ +Y  +  + I +L V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVV 328
           +  E +   +   + R       VP   PL   L +FQ+    +  VV
Sbjct: 60  LMTEKKE-FTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVV 106

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           +    + M P     S+        E +  ++   HSR PV   +  +++G+LL K LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL- 59

Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVV 328
                +    +  ++++ R    VP    L  +L EF+   +HMA V+
Sbjct: 60  -PLILKADGDSDDVKKLLRPATFVPESKRLNVLLREFRANHNHMAIVI 106

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 84.0 bits (209), Expect = 9e-20
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           ++   + M P     +L  N  LD E +  I+   HSR PV S +  +I G+L+ K LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 285 VRPETETPVSAVSIRRIPR-VPSDMPLYDILNEFQKGSSHMAAVV 328
                    S   + R    VP    +  +L EF+    HMA V+
Sbjct: 61  FMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVI 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 65/446 (14%), Positives = 121/446 (27%), Gaps = 130/446 (29%)

Query: 67  LEILQRSGTPSEKKQAAAIF--PVVQKQHQLLVTLL--LCNAASMEALPI--YLDKLFNQ 120
              L         ++    F   V++  ++ L++ +       SM         D+L+N 
Sbjct: 68  FWTLLSKQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 121 YVAI----------ILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLV----RILMIICY 166
                          L +   L   E+ P       G+  G+   W+         + C 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQC- 178

Query: 167 PIAYPIGKILDWV-LGH-NEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLT 224
                  KI  W+ L + N        L+ L  +  Q        +   + I      + 
Sbjct: 179 --KMD-FKIF-WLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 225 EKTAE---EAMTPIESTFSL----DVNSKLDWEAMG---KILA--RGHSRVPVYSGNPKN 272
            +                 L    +V +   W A     KIL   R        S     
Sbjct: 232 AELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 273 IIGLLLVKSLLTVRPETET-------------PVSAVSIRRIPRVPS-------DMPLYD 312
            I L      LT   E ++             P   ++    PR  S       D     
Sbjct: 288 HISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGL--A 342

Query: 313 ILNEFQK-GSSHMAAVVKAKGKS-KTLPPMTDGKK--------PKLNEAKGGDCDLTAPL 362
             + ++      +  ++++   S   L P  + +K        P           +   L
Sbjct: 343 TWDNWKHVNCDKLTTIIES---SLNVLEP-AEYRKMFDRLSVFPP-------SAHIPTIL 391

Query: 363 LSK--QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           LS    D     V+V V++      + +    Q  +ST                   I++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKEST-------------------ISI 428

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRI 446
             ++ EL  +      +    +H+ I
Sbjct: 429 PSIYLELKVK-----LENEYALHRSI 449

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--------NI 273
            L E T  + M   +    + V + L+  A+  +   G++ +PV   + +         I
Sbjct: 10  QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315
           +  +     +      +  V  V +  IPR+  + P+     
Sbjct: 69  MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFG 110

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR---PETETPVSAVSIRRIPRVPS 306
           +A  ++ A G +  PV  G  +  +G++ +  LL  R   P  +  +    +  +     
Sbjct: 26  DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVRSYRP 83

Query: 307 DMPLYDILNEFQKGSSHMAAVVKAKGK 333
              L+D L         +  +    G+
Sbjct: 84  GEQLFDNLISVAAAKCSVVPLADEDGR 110

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN--------I 273
           +  +   ++ M   E    + + + L+  A+  ++  G+S +PV     K         I
Sbjct: 11  EFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPMYKLHGLISTAMI 69

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315
           +  +L    +      E  V  V  + IP +  +      L 
Sbjct: 70  LDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALE 111

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 11/120 (9%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--------NI 273
           +  + T +  + P +    +   + LD  A+  +   G+S +PV   + K         +
Sbjct: 7   EFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTSYKLHGLISMTMM 65

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           +  +L    +         V  V  R IPR+  D  L   +            V    G 
Sbjct: 66  MDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVN--HPFVCVENDDGY 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.94
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.92
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.92
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.9
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.89
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.85
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.85
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.84
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.83
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.82
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.81
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.79
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.78
4esy_A	170	CBS domain containing membrane protein; structural	99.78
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.76
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.76
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.76
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.72
3ddj_A	296	CBS domain-containing protein; structural genomics	99.71
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.7
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.69
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.68
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.68
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.68
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.68
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.66
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.66
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.66
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.66
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.65
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.64
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.64
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.64
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.64
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.63
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.63
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.63
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.62
3ddj_A	296	CBS domain-containing protein; structural genomics	99.62
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.61
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.61
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.61
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.6
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.6
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.59
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.59
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.59
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.59
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.58
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.56
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.55
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.54
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.54
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.52
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.52
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.51
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.46
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.45
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.44
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.43
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.43
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.4
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.22
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.16
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.05
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.49
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.41
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.36
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.35
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.06
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.03
4esy_A	170	CBS domain containing membrane protein; structural	98.02
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	97.92
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.91
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	97.91
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.84
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.81
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.75
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.74
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.74
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.73
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.72
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.72
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.72
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.71
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.71
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.69
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	97.69
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.68
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.68
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.67
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.66
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.66
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.66
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.65
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.62
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.61
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.59
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.59
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.56
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.56
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.56
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.55
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.53
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.53
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.52
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.49
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.49
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.48
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.48
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.47
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.44
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.43
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.4
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.32
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.17
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.02
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.88
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	96.86
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	96.78
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.6
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.43
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.32
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.91
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	90.85
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	90.7
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	90.64
2pli_A	91	Uncharacterized protein; CORC-associated region, M	89.56
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	89.39
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	89.31
2p13_A	90	CBS domain; alpha-beta structure, structural genom	88.64
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	88.2
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	87.3
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	87.07
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	86.8
3ded_A	113	Probable hemolysin; structural genomics, P protein	85.36

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.94  E-value=4.8e-27  Score=218.04  Aligned_cols=167  Identities=25%  Similarity=0.468  Sum_probs=114.5

Q ss_pred             cccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCcee
Q 010325          184 EALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (513)
Q Consensus       184 ~~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~  263 (513)
                      ...++++||+.+++    ++.+.|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.|.+++++++
T Consensus         4 ~~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~   78 (172)
T 3lhh_A            4 DDNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRF   78 (172)
T ss_dssp             -------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEE
T ss_pred             cccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEE
Confidence            45689999999997    44567999999999999999999999999999988999999999999 99999999999999


Q ss_pred             eeeeCCCCcEEEEEEhhhhhccCCC-CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCC
Q 010325          264 PVYSGNPKNIIGLLLVKSLLTVRPE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD  342 (513)
Q Consensus       264 PV~~~~~d~ivGiV~~kDLl~~~~~-~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~  342 (513)
                      ||++++.++++|+|+.+|++..... ...+++++| +++++|++++++.++++.|.+++.+.+||+|             
T Consensus        79 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-------------  144 (172)
T 3lhh_A           79 PVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-------------  144 (172)
T ss_dssp             EEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-------------
T ss_pred             EEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-------------
Confidence            9998655799999999999975432 256899998 9999999999999999999999999999999             


Q ss_pred             CCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHH
Q 010325          343 GKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLED  422 (513)
Q Consensus       343 ~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleD  422 (513)
                                                                                         ++|+++||||.+|
T Consensus       145 -------------------------------------------------------------------~~g~lvGiit~~D  157 (172)
T 3lhh_A          145 -------------------------------------------------------------------EYGDLKGLVTLQD  157 (172)
T ss_dssp             -------------------------------------------------------------------TTSCEEEEEEHHH
T ss_pred             -------------------------------------------------------------------CCCCEEEEeeHHH
Confidence                                                                               5789999999999


Q ss_pred             HHHHHhcCccCCCCc
Q 010325          423 VFEELLQEEIVDETD  437 (513)
Q Consensus       423 v~eel~~~ei~de~d  437 (513)
                      +++++.| ++.||+|
T Consensus       158 il~~l~~-~~~de~~  171 (172)
T 3lhh_A          158 MMDALTG-EFFQEDG  171 (172)
T ss_dssp             HHHHHHT-TCC----
T ss_pred             HHHHHhC-CCccccC
Confidence            9999996 9988875

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.92  E-value=2.8e-25  Score=202.69  Aligned_cols=138  Identities=22%  Similarity=0.328  Sum_probs=125.8

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeee
Q 010325          186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPV  265 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV  265 (513)
                      .+|++||+.+++    ++.+.|.++++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||
T Consensus         2 ~~t~~el~~li~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHH----HHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHH----hHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            478999999998    44557999999999999999999999999999988999999999999 9999999999999999


Q ss_pred             eeCCCCcEEEEEEhhhhhccCCC-CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          266 YSGNPKNIIGLLLVKSLLTVRPE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       266 ~~~~~d~ivGiV~~kDLl~~~~~-~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.++++|+|+.+|++..... ...+++++| +++++|++++++.++++.|.+++.+.+||+|
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd  140 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL-RPAVFVPEGKSLTALLKEFREQRNHMAIVID  140 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC-BCCCEEETTSBHHHHHHHHHHTTCCEEEEEC
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc-CCCEEECCCCCHHHHHHHHHhcCCeEEEEEC
Confidence            98764699999999999987544 456788986 5688999999999999999999999999999

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.92  E-value=3.9e-25  Score=206.15  Aligned_cols=153  Identities=21%  Similarity=0.310  Sum_probs=135.6

Q ss_pred             ccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325          204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (513)
Q Consensus       204 ~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl  283 (513)
                      .++|.++++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+
T Consensus        14 ~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~   92 (173)
T 3ocm_A           14 PAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLV   92 (173)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHH
T ss_pred             HhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHH
Confidence            456999999999999999999999999999999999999999999 9999999999999999986557999999999999


Q ss_pred             ccCCC-CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCccc
Q 010325          284 TVRPE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPL  362 (513)
Q Consensus       284 ~~~~~-~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~  362 (513)
                      ..... ...++.  |++++++|++++++.++++.|.+++.+++||+|                                 
T Consensus        93 ~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd---------------------------------  137 (173)
T 3ocm_A           93 ADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD---------------------------------  137 (173)
T ss_dssp             HHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC---------------------------------
T ss_pred             HHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe---------------------------------
Confidence            75321 245676  568899999999999999999999999999999                                 


Q ss_pred             cccccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCchhh
Q 010325          363 LSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYV  440 (513)
Q Consensus       363 ~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~~~  440 (513)
                                                                     ++|+++||||.+||++++.| ++.||+|++.
T Consensus       138 -----------------------------------------------e~g~lvGiIT~~Dil~~l~~-~i~de~~~~~  167 (173)
T 3ocm_A          138 -----------------------------------------------EFGAIEGLVTPIDVFEAIAG-EFPDEDELPD  167 (173)
T ss_dssp             -----------------------------------------------TTCCEEEEECHHHHHHHHHC-CCCCTTSCC-
T ss_pred             -----------------------------------------------CCCCEEEEEeHHHHHHHHhC-cCCCccccHh
Confidence                                                           67899999999999999996 9999988644

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.90  E-value=4.3e-24  Score=192.41  Aligned_cols=122  Identities=18%  Similarity=0.362  Sum_probs=98.9

Q ss_pred             CCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          206 GGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       206 ~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++..
T Consensus         3 ~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            3 AGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ---------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            5889999999999999999999999999999999999999999 999999999999999998654799999999999875


Q ss_pred             CCCC-cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          286 RPET-ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       286 ~~~~-~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .... ..+++++| +++++|++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  125 (148)
T 3lv9_A           82 KINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVD  125 (148)
T ss_dssp             HHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe
Confidence            3322 57899998 9999999999999999999999999999999

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.89  E-value=5.6e-24  Score=193.07  Aligned_cols=148  Identities=28%  Similarity=0.437  Sum_probs=123.5

Q ss_pred             CCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeee-eCCCCcEEEEEEhhhhhccC
Q 010325          208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVY-SGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       208 ~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~-~~~~d~ivGiV~~kDLl~~~  286 (513)
                      .++++|++++++++++.+.+|+++|+|+++++++++++++. ++++.|.+++++++||+ +++.++++|+|+.+|++...
T Consensus         2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~   80 (153)
T 3oco_A            2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQA   80 (153)
T ss_dssp             ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHH
Confidence            36788999999999999999999999988999999999999 99999999999999999 55447999999999998653


Q ss_pred             CC-CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCcccccc
Q 010325          287 PE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK  365 (513)
Q Consensus       287 ~~-~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~  365 (513)
                      .. ...+++++| +++++|++++++.++++.|.+++.+.+||+|                                    
T Consensus        81 ~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd------------------------------------  123 (153)
T 3oco_A           81 RIDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID------------------------------------  123 (153)
T ss_dssp             HHHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC------------------------------------
T ss_pred             hcCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe------------------------------------
Confidence            22 256899998 9999999999999999999999999999999                                    


Q ss_pred             ccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (513)
Q Consensus       366 ~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~  438 (513)
                                                                  ++|+++||||.+|+++++.| ++.||+|+
T Consensus       124 --------------------------------------------~~g~~vGivt~~dil~~l~~-~~~de~~~  151 (153)
T 3oco_A          124 --------------------------------------------EYGGTSGIITDKDVYEELFG-NLRDEQDD  151 (153)
T ss_dssp             --------------------------------------------TTSCEEEEECHHHHHHHHHC---------
T ss_pred             --------------------------------------------CCCCEEEEeeHHHHHHHHhc-cCCCcccC
Confidence                                                        57899999999999999996 89998874

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.87  E-value=4.6e-22  Score=190.49  Aligned_cols=179  Identities=9%  Similarity=0.094  Sum_probs=133.9

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhc---CCce
Q 010325          186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR---GHSR  262 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~---~~sr  262 (513)
                      .+.+++.+.++.          .++++|++++++++.|.+.+|+++|++  +++++++++++. ++++.++++   +++.
T Consensus        24 ~l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~   90 (205)
T 3kxr_A           24 YLPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDN   90 (205)
T ss_dssp             TSCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCE
T ss_pred             hCCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeE
Confidence            345666666663          478999999999999999999999997  899999999999 999999987   7899


Q ss_pred             eeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCC
Q 010325          263 VPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD  342 (513)
Q Consensus       263 ~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~  342 (513)
                      +||++++ ++++|+|+.+||+...  ...+++++|.+++++|++++++.++++.|++++.+.+||||             
T Consensus        91 ~~Vvd~~-~~lvGivt~~dll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-------------  154 (205)
T 3kxr_A           91 LFIVDEA-DKYLGTVRRYDIFKHE--PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVID-------------  154 (205)
T ss_dssp             EEEECTT-CBEEEEEEHHHHTTSC--TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-------------
T ss_pred             EEEEcCC-CeEEEEEEHHHHHhCC--CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-------------
Confidence            9999864 8999999999998753  35789999888999999999999999999999999999999             


Q ss_pred             CCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHH
Q 010325          343 GKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLED  422 (513)
Q Consensus       343 ~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleD  422 (513)
                                                                                         ++|+++||||.+|
T Consensus       155 -------------------------------------------------------------------~~g~lvGiIT~~D  167 (205)
T 3kxr_A          155 -------------------------------------------------------------------DAGELIGRVTLRA  167 (205)
T ss_dssp             -------------------------------------------------------------------TTSBEEEEEEHHH
T ss_pred             -------------------------------------------------------------------CCCeEEEEEEHHH
Confidence                                                                               6789999999999


Q ss_pred             HHHHHhcCccCCCCchhhhhHHHHHHHhHHHhhhhccCC
Q 010325          423 VFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAP  461 (513)
Q Consensus       423 v~eel~~~ei~de~d~~~~~~~~~~~~~~~~~~~~~r~~  461 (513)
                      |++.+.+ |..++.-...++.......+....+..+|+|
T Consensus       168 il~~i~~-e~~ed~~~~~g~~~~~~~~~~~~~~~k~R~~  205 (205)
T 3kxr_A          168 ATALVRE-HYEAQLMATAGMDESDDLFAPILKGAQRRAV  205 (205)
T ss_dssp             HHHHHHH-HHC----------------------------
T ss_pred             HHHHHHH-HHHHHHHHhcCCCcccccCCCHHHHHHhhCC
Confidence            9999874 5544443333433222244455556666765

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.85  E-value=9e-22  Score=175.13  Aligned_cols=131  Identities=31%  Similarity=0.496  Sum_probs=109.4

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccccc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIRRI  301 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~~~~~v~dim~~~~  301 (513)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+....   ....+++++| +++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m-~~~   79 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL-RPA   79 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC-BCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc-CCC
Confidence            678999999988999999999999 99999999999999999875479999999999997643   2346789986 568


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCC
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPL  381 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i  381 (513)
                      ++|++++++.++++.|.+++.+.+||+|                                                    
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd----------------------------------------------------  107 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVID----------------------------------------------------  107 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEEC----------------------------------------------------
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEe----------------------------------------------------
Confidence            8999999999999999999999999999                                                    


Q ss_pred             ccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325          382 SSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (513)
Q Consensus       382 ~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~  438 (513)
                                                  ++|+++||||.+|+++++.| |+.||+|+
T Consensus       108 ----------------------------~~g~lvGiit~~Dil~~l~~-~~~de~~~  135 (136)
T 3lfr_A          108 ----------------------------EYGGVAGLVTIEDVLEQIVG-DIEDEHDV  135 (136)
T ss_dssp             ----------------------------TTSCEEEEEEHHHHHTTC-----------
T ss_pred             ----------------------------CCCCEEEEEEHHHHHHHHhC-CCcCcccC
Confidence                                        67899999999999999996 99998874

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.85  E-value=3e-21  Score=170.00  Aligned_cols=105  Identities=31%  Similarity=0.490  Sum_probs=94.8

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~  302 (513)
                      ..+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++........+++++| ++++
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m-~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV-RPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC-BCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh-CCCe
Confidence            46789999999998999999999999 999999999999999998755799999999999987555567899986 6788


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd  106 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVID  106 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEEC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            999999999999999999999999999

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.84  E-value=2.6e-21  Score=170.93  Aligned_cols=103  Identities=20%  Similarity=0.357  Sum_probs=92.4

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----ccccccccccc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRR  300 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~----~~~v~dim~~~  300 (513)
                      +++|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++....+.    ..+++++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            368999999988999999999999 9999999999999999976558999999999998765432    24678876 88


Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++|++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  107 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVD  107 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEEC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEc
Confidence            89999999999999999999999999999

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.83  E-value=6.1e-21  Score=174.71  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=90.4

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------Cccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------TETPVS  294 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------~~~~v~  294 (513)
                      |-..+++++|+|+.++++++++++++ ++++.|.+++++++||++++ ++++|+|+.+|++.+...        ...+++
T Consensus        12 ~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~   89 (156)
T 3k6e_A           12 FLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQEIMADTDIV   89 (156)
T ss_dssp             HHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGG
T ss_pred             HhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccccccccCHH
Confidence            44568999999999999999999999 99999999999999999865 899999999999764211        246789


Q ss_pred             ccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       295 dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++|.++++++++++++.++++.|.+++  ++||||
T Consensus        90 ~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd  122 (156)
T 3k6e_A           90 HMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD  122 (156)
T ss_dssp             GTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEEC
T ss_pred             HhhcCCceecccccHHHHHHHHHHHcC--CeEEEe
Confidence            999999999999999999999998775  589999

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.82  E-value=7.9e-21  Score=167.37  Aligned_cols=106  Identities=25%  Similarity=0.350  Sum_probs=91.8

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--Ccccccccccc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIR  299 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~~  299 (513)
                      +|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++.....  ...+++++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            478899999999988999999999999 999999999999999998755799999999999875422  246788987 7


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  109 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVD  109 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEc
Confidence            788999999999999999999999999999

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.81  E-value=3.8e-20  Score=162.28  Aligned_cols=104  Identities=30%  Similarity=0.466  Sum_probs=92.0

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC--CCcccccccccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP--ETETPVSAVSIRRI  301 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~--~~~~~v~dim~~~~  301 (513)
                      ++.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++....  ....+++++| +++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m-~~~   78 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RTA   78 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC-BCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc-CCC
Confidence            3678999999987899999999999 99999999999999999865579999999999997643  2346788986 668


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVID  106 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            8999999999999999999999999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.79  E-value=2.9e-20  Score=189.01  Aligned_cols=211  Identities=10%  Similarity=0.125  Sum_probs=159.8

Q ss_pred             CCCChhHHHHHHHhhcC-cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          207 GELTHDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       207 g~L~~~E~~~I~~vl~l-~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.++++|.++++++++| ++.+|+|+|+|+.++++++.+.++. ++++.|.+++++++||++++.++++|+|+.+|++..
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~   80 (334)
T 2qrd_G            2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV   80 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            34567899999999995 5599999999999999999999999 999999999999999999766899999999999863


Q ss_pred             C--------CCC------cccccc-------cccccc--eeeCCCCCHHHHHHHHHhCCceEEEEEecCCC-----cccC
Q 010325          286 R--------PET------ETPVSA-------VSIRRI--PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-----SKTL  337 (513)
Q Consensus       286 ~--------~~~------~~~v~d-------im~~~~--~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~-----~~Gi  337 (513)
                      .        ...      ..++..       +|.+++  +++++++++.++++.|.+++.+.+||+|++|+     +.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Gi  160 (334)
T 2qrd_G           81 IKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV  160 (334)
T ss_dssp             HHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEE
T ss_pred             HHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEE
Confidence            2        111      222222       356777  89999999999999999999999999999986     9999


Q ss_pred             CCCCCCCCccccccCCCCCC-CCccccccc-cccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccc
Q 010325          338 PPMTDGKKPKLNEAKGGDCD-LTAPLLSKQ-DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVI  415 (513)
Q Consensus       338 v~~T~~dile~i~g~~~~s~-~~~p~~~~~-~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~li  415 (513)
                      +  |.+|+++.+.+...... ...+..... .+....+.++.+.++.+..+.+....      ...+++..   ++|+++
T Consensus       161 v--t~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~------~~~~~Vvd---~~~~~~  229 (334)
T 2qrd_G          161 L--TQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKN------ISAVPIVN---SEGTLL  229 (334)
T ss_dssp             E--EHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHT------CSEEEEEC---TTCBEE
T ss_pred             e--eHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcC------CcEEEEEc---CCCcEE
Confidence            9  99999988764321110 111211111 13455678888888877766655321      12233320   468999


Q ss_pred             eecchHHHHHHHhc
Q 010325          416 GIITLEDVFEELLQ  429 (513)
Q Consensus       416 GIITleDv~eel~~  429 (513)
                      |+||..|+++.+.+
T Consensus       230 Giit~~dl~~~~~~  243 (334)
T 2qrd_G          230 NVYESVDVMHLIQD  243 (334)
T ss_dssp             EEEETHHHHHHHTT
T ss_pred             EEEEHHHHHHHhhc
Confidence            99999999998764

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.78  E-value=5.2e-19  Score=176.63  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=107.9

Q ss_pred             CCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhc-----CCceeeeeeCCCCcEEEEEEhhh
Q 010325          207 GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR-----GHSRVPVYSGNPKNIIGLLLVKS  281 (513)
Q Consensus       207 g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~-----~~sr~PV~~~~~d~ivGiV~~kD  281 (513)
                      +.++.+++..+.+++.+.+.+|+++|+|  +++++++++++. ++++.++++     +++++||++++ ++++|+|+.+|
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~d  191 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRD  191 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHH
Confidence            4678899999999999999999999997  899999999999 999999987     78999999865 89999999999


Q ss_pred             hhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          282 LLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       282 Ll~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++...  ...+++++|.+++++|++++++.++++.|++++.+.+||||
T Consensus       192 ll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  237 (278)
T 2yvy_A          192 LIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  237 (278)
T ss_dssp             HHHSC--TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhcCC--CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe
Confidence            99753  35789999889999999999999999999999999999999

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.78  E-value=5.2e-19  Score=163.17  Aligned_cols=112  Identities=16%  Similarity=0.256  Sum_probs=96.9

Q ss_pred             hHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---
Q 010325          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---  288 (513)
Q Consensus       212 ~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---  288 (513)
                      .+++.+.+.  +.+++|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....   
T Consensus         6 ~~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~   79 (170)
T 4esy_A            6 ARRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI   79 (170)
T ss_dssp             HHHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH
T ss_pred             HHHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc
Confidence            344455554  468899999996  899999999999 99999999999999999875 899999999999864321   


Q ss_pred             -----------------------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          289 -----------------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       289 -----------------------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                                             ...+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd  143 (170)
T 4esy_A           80 YEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ  143 (170)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE
T ss_pred             cchhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE
Confidence                                   12468899999999999999999999999999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.76  E-value=2.8e-20  Score=188.98  Aligned_cols=211  Identities=13%  Similarity=0.210  Sum_probs=155.6

Q ss_pred             cCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325          205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (513)
Q Consensus       205 ~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~  284 (513)
                      +.|.+.+.+.+.+++.  |.+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+++.+|++.
T Consensus        16 ~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~   92 (330)
T 2v8q_E           16 HSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFIN   92 (330)
T ss_dssp             -------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHH
T ss_pred             HhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHH
Confidence            4567777777778887  56889999999999999999999999 99999999999999999987679999999999985


Q ss_pred             cCCC------------Ccc-------cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEec-CCCcccCCCCCCCC
Q 010325          285 VRPE------------TET-------PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLPPMTDGK  344 (513)
Q Consensus       285 ~~~~------------~~~-------~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE-~G~~~Giv~~T~~d  344 (513)
                      ....            ...       .+.++|.+++++|++++++.++++.|.+++.+.+||+|+ +|+++|++  |.+|
T Consensus        93 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Giv--t~~d  170 (330)
T 2v8q_E           93 ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL--THKR  170 (330)
T ss_dssp             HHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEE--CHHH
T ss_pred             HHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEE--cHHH
Confidence            3210            011       124567788999999999999999999999999999999 99999999  9999


Q ss_pred             CccccccCCCCCC----CCcccccccccc-CCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecc
Q 010325          345 KPKLNEAKGGDCD----LTAPLLSKQDEK-TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIIT  419 (513)
Q Consensus       345 ile~i~g~~~~s~----~~~p~~~~~~~~-~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIIT  419 (513)
                      +++.+.+...+..    .+.+.....-.. ...+.++.+.++.+..+.+....      ...+++..   ++|+++|+||
T Consensus       171 l~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~------~~~~~Vvd---~~~~l~Giit  241 (330)
T 2v8q_E          171 ILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHR------VSALPVVD---EKGRVVDIYS  241 (330)
T ss_dssp             HHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHC------CSEEEEEC---TTSBEEEEEE
T ss_pred             HHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcC------CCeEEEEC---CCCcEEEEEE
Confidence            9988754332211    111111111111 45678888888877766655321      22334320   3689999999


Q ss_pred             hHHHHHHHhc
Q 010325          420 LEDVFEELLQ  429 (513)
Q Consensus       420 leDv~eel~~  429 (513)
                      ..|+++.+.+
T Consensus       242 ~~dl~~~~~~  251 (330)
T 2v8q_E          242 KFDVINLAAE  251 (330)
T ss_dssp             GGGTGGGGGS
T ss_pred             HHHHHHHHhc
Confidence            9999988763

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.76  E-value=2.5e-18  Score=184.42  Aligned_cols=134  Identities=14%  Similarity=0.141  Sum_probs=119.1

Q ss_pred             cccHHHHHHHHHHhhhhhccC---------CCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHH
Q 010325          186 LFRRAQLKALVTIHSQEAGKG---------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL  256 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~~~---------g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~  256 (513)
                      .++++|+..+++.    ..+.         +.++++|++++++++++++.+|+++|++  ++++++++++++ ++++.++
T Consensus       110 ~l~~dd~~~ll~~----l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQA----VRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHH----HHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHh----CCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            4667788888763    2233         6899999999999999999999999997  899999999999 9999999


Q ss_pred             hc-----CCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          257 AR-----GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       257 ~~-----~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++     +++++||++++ ++++|+|+.+|++...  .+.+++++|.+++++|++++++.++++.|++++.+.+||||
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~--~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD  257 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  257 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC--TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC--CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc
Confidence            87     47999999875 8999999999999753  45789999888999999999999999999999999999999

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.76  E-value=5.5e-20  Score=186.11  Aligned_cols=213  Identities=11%  Similarity=0.156  Sum_probs=162.0

Q ss_pred             cCCCCChhHHHHHHHhhcC-cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325          205 KGGELTHDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (513)
Q Consensus       205 ~~g~L~~~E~~~I~~vl~l-~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl  283 (513)
                      +.+.++++|+++++++++| .+.+|+|+|+|+.++++++.+.++. ++++.|.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            3466789999999999999 9999999999999999999999999 9999999999999999998767999999999998


Q ss_pred             ccCC-----CC---------cccccc------cccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCC-----cccCC
Q 010325          284 TVRP-----ET---------ETPVSA------VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-----SKTLP  338 (513)
Q Consensus       284 ~~~~-----~~---------~~~v~d------im~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~-----~~Giv  338 (513)
                      ....     ..         ...+.+      +|.++++++++++++.++++.|.+++.+.+||+|++|.     +.|++
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Giv  166 (323)
T 3t4n_C           87 NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVL  166 (323)
T ss_dssp             HHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEE
T ss_pred             HHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEe
Confidence            6321     00         012223      33577889999999999999999999999999999987     99999


Q ss_pred             CCCCCCCccccccCCCCCC-CCcccccccc-ccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccce
Q 010325          339 PMTDGKKPKLNEAKGGDCD-LTAPLLSKQD-EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG  416 (513)
Q Consensus       339 ~~T~~dile~i~g~~~~s~-~~~p~~~~~~-~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liG  416 (513)
                        |.+|+++.+.+...... ...+...... +....+.++.+.++.+..+.+...-      +..+++..   ++|+++|
T Consensus       167 --t~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~------~~~~pVvd---~~~~~~G  235 (323)
T 3t4n_C          167 --TQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGR------VSSVPIID---ENGYLIN  235 (323)
T ss_dssp             --EHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHT------CSEEEEEC---TTCBEEE
T ss_pred             --cHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcC------CCEEEEEC---CCCeEEE
Confidence              99999988764332211 1112222211 2356678888988877777665321      22233310   4689999


Q ss_pred             ecchHHHHHHHhc
Q 010325          417 IITLEDVFEELLQ  429 (513)
Q Consensus       417 IITleDv~eel~~  429 (513)
                      +||..|+++.+.+
T Consensus       236 iit~~dl~~~~~~  248 (323)
T 3t4n_C          236 VYEAYDVLGLIKG  248 (323)
T ss_dssp             EEETTHHHHHHHT
T ss_pred             EEeHHHHHHHHhh
Confidence            9999999998764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.72  E-value=1.2e-17  Score=167.68  Aligned_cols=117  Identities=18%  Similarity=0.193  Sum_probs=107.7

Q ss_pred             CCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhc-----CCceeeeeeCCCCcEEEEEEhhh
Q 010325          207 GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR-----GHSRVPVYSGNPKNIIGLLLVKS  281 (513)
Q Consensus       207 g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~-----~~sr~PV~~~~~d~ivGiV~~kD  281 (513)
                      ..++.+|+..+++++.+.+.+|+++|++  ++++++.++++. ++++.|+++     +++++||++++ ++++|+|+.+|
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~d  193 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRD  193 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHH
Confidence            3678899999999999999999999997  899999999999 999999987     88999999865 89999999999


Q ss_pred             hhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          282 LLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       282 Ll~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++...  ...+++++|.+++++|++++++.++++.|.+++.+.+||||
T Consensus       194 ll~~~--~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd  239 (286)
T 2oux_A          194 LIVND--DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD  239 (286)
T ss_dssp             HTTSC--TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHcCC--CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc
Confidence            98753  35789999889999999999999999999999999999999

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.71  E-value=1.3e-18  Score=173.83  Aligned_cols=217  Identities=15%  Similarity=0.163  Sum_probs=164.3

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceee
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP  264 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~P  264 (513)
                      ..+|.+|+...+.    .    +.   ...+...+.+++.+.+|+++|++  +++++++++++. ++++.|.+++++++|
T Consensus        63 GivT~~Di~~~~~----~----~~---~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lp  128 (296)
T 3ddj_A           63 GLLTTRDLLSTVE----S----YC---KDSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLP  128 (296)
T ss_dssp             EEEEHHHHHGGGT----T----CC------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEE
T ss_pred             EEEeHHHHHHHhc----c----cc---cccccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEE
Confidence            3578888877663    1    10   01334556667778999999997  788999999998 999999999999999


Q ss_pred             eeeCCCCcEEEEEEhhhhhccCCC--CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCC
Q 010325          265 VYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD  342 (513)
Q Consensus       265 V~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~  342 (513)
                      |++++ ++++|+++.+|++.....  ...++.++|.++++++++++++.++++.|.+++.+.+||+|++|.++|++  |.
T Consensus       129 Vvd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Giv--t~  205 (296)
T 3ddj_A          129 VVDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIV--TV  205 (296)
T ss_dssp             EECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EH
T ss_pred             EEcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEE--EH
Confidence            99765 899999999999875322  34688999889999999999999999999999999999999999999999  99


Q ss_pred             CCCccccccCCCCC----CCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceec
Q 010325          343 GKKPKLNEAKGGDC----DLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII  418 (513)
Q Consensus       343 ~dile~i~g~~~~s----~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGII  418 (513)
                      +|+++.+...+..-    ....+.  ...+....+.++.+.++.+..+.+...-      ++.+++..   ++|+++|||
T Consensus       206 ~dl~~~~~~~~~~~~~~~~~~~~v--~~~m~~~~~~v~~~~~l~~a~~~m~~~~------~~~l~Vvd---~~g~~~Gii  274 (296)
T 3ddj_A          206 VNAIKQLAKAVDKLDPDYFYGKVV--KDVMVTNLVTIDELASVNRAAAEMIVKR------IGSLLILN---KDNTIRGII  274 (296)
T ss_dssp             HHHHHHHHHHHHHTCTHHHHTCBH--HHHSBCCCCBCCTTSBHHHHHHHHHHHT------CSEEEEEC---TTSCEEEEE
T ss_pred             HHHHHHHHHHHhhcChhhhcCcCH--HHHhCCCCeEECCCCcHHHHHHHHHHcC------CCEEEEEC---CCCeEEEEE
Confidence            99998876222110    001111  1223346678999999888777665432      12233310   478999999


Q ss_pred             chHHHHHHHhc
Q 010325          419 TLEDVFEELLQ  429 (513)
Q Consensus       419 TleDv~eel~~  429 (513)
                      |.+||++.+.+
T Consensus       275 t~~Dil~~l~~  285 (296)
T 3ddj_A          275 TERDLLIALHH  285 (296)
T ss_dssp             EHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999999884

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.70  E-value=5.5e-17  Score=146.65  Aligned_cols=109  Identities=18%  Similarity=0.224  Sum_probs=91.3

Q ss_pred             HHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------
Q 010325          217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------  288 (513)
Q Consensus       217 I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------  288 (513)
                      .++...+.+.+|+++|+|+.++++++++.++. ++++.|.+++++++||++++ ++++|+|+.+|++.....        
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   79 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFER   79 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGG
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHH
Confidence            34566788999999999877899999999998 99999999999999999864 789999999999876432        


Q ss_pred             -CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          289 -TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       289 -~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                       ...++.++|.++++++++++++.++++.|.+++.  +||+|
T Consensus        80 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd  119 (157)
T 2emq_A           80 LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN  119 (157)
T ss_dssp             GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC
T ss_pred             hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc
Confidence             2467899988899999999999999999999986  89999

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.69  E-value=4.9e-17  Score=145.38  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=92.4

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----------------
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----------------  287 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~----------------  287 (513)
                      ...+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4678999999988899999999999 99999999999999999865 79999999999985421                


Q ss_pred             -CCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          288 -ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       288 -~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                       ....++.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  123 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD  123 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC
T ss_pred             HhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence             123678999888889999999999999999999999999999

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.68  E-value=1.6e-18  Score=170.74  Aligned_cols=218  Identities=15%  Similarity=0.172  Sum_probs=158.1

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceee
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP  264 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~P  264 (513)
                      ..++.+|+..++..    ....+.++..+   ..+++...+.+|+++|++  ++++++.++++. ++++.|.+++++++|
T Consensus        50 Givt~~di~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~  119 (280)
T 3kh5_A           50 GIITSMDIVDFMGG----GSKYNLIREKH---ERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAP  119 (280)
T ss_dssp             EEEEHHHHHHHTTT----SGGGHHHHTTS---TTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEE
T ss_pred             EEEEHHHHHHHhcc----cchhhhhhhcc---ccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEE
Confidence            45788998887631    11111111111   223333447899999997  888999999998 999999999999999


Q ss_pred             eeeCCCCcEEEEEEhhhhhccCCC---CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCC
Q 010325          265 VYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMT  341 (513)
Q Consensus       265 V~~~~~d~ivGiV~~kDLl~~~~~---~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T  341 (513)
                      |++++ ++++|+++.+|++.....   ...++.++|.+++.++++++++.++++.|.+++.+.+||+ ++|.+.|++  |
T Consensus       120 Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Giv--t  195 (280)
T 3kh5_A          120 IVNDE-NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGII--T  195 (280)
T ss_dssp             EECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEE--E
T ss_pred             EEcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEE--E
Confidence            99865 899999999999864321   2347899988899999999999999999999999999999 799999999  9


Q ss_pred             CCCCccccccCCCCC---------CCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCC
Q 010325          342 DGKKPKLNEAKGGDC---------DLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDG  412 (513)
Q Consensus       342 ~~dile~i~g~~~~s---------~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g  412 (513)
                      .+|+++.+.......         ..+.|..  .-+....+.++.+.++.+..+.+...-      ++.+++..   ++|
T Consensus       196 ~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~m~~~~~~v~~~~~l~~a~~~m~~~~------~~~l~Vvd---~~g  264 (280)
T 3kh5_A          196 STDFIKLLGSDWAFNHMQTGNVREITNVRME--EIMKRDVITAKEGDKLKKIAEIMVTND------IGALPVVD---ENL  264 (280)
T ss_dssp             HHHHHHHHTSHHHHHHHHSCCTHHHHHCBHH--HHSBSSCCCBCTTCBHHHHHHHHHHHT------CCEEEEEC---TTC
T ss_pred             HHHHHHHHhhhhhhhhhcccchhhhhCCcHH--HHhcCCCEEECCCCCHHHHHHHHHHCC------CCEEEEEC---CCC
Confidence            999998875321100         0111111  123356678899998887777665432      22233310   457


Q ss_pred             ccceecchHHHHHHH
Q 010325          413 EVIGIITLEDVFEEL  427 (513)
Q Consensus       413 ~liGIITleDv~eel  427 (513)
                      +++|+||.+||++.+
T Consensus       265 ~~~Givt~~dil~~l  279 (280)
T 3kh5_A          265 RIKGIITEKDVLKYF  279 (280)
T ss_dssp             BEEEEEEHHHHGGGG
T ss_pred             eEEEEEeHHHHHHhh
Confidence            999999999999765

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.68  E-value=2.4e-17  Score=162.33  Aligned_cols=180  Identities=13%  Similarity=0.188  Sum_probs=142.9

Q ss_pred             ccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC------------------c
Q 010325          229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET------------------E  290 (513)
Q Consensus       229 ~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~------------------~  290 (513)
                      ..+|++  +++++++++++. ++++.|.+++++++||++++.++++|+++.+|++......                  +
T Consensus         7 ~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
T 3kh5_A            7 KIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAIN   83 (280)
T ss_dssp             GTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTT
T ss_pred             HHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhh
Confidence            345665  899999999998 9999999999999999986458999999999998754211                  3


Q ss_pred             ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCccccccccccC
Q 010325          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKT  370 (513)
Q Consensus       291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~  370 (513)
                      .+++++|.++++++++++++.++++.|.+++.+.+||+|++|++.|++  |.+|+++.+.+....+.   +.  ..-+..
T Consensus        84 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl~~~~~~~~~~~~---~v--~~~m~~  156 (280)
T 3kh5_A           84 EPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLI--TERDVIRALLDKIDENE---VI--DDYITR  156 (280)
T ss_dssp             SBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEE--EHHHHHHHHGGGSCTTC---BS--GGGCBC
T ss_pred             hhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEE--EHHHHHHHHhhcCCCCC---CH--HHHhCC
Confidence            478999888999999999999999999999999999999999999999  99999988765544321   11  112234


Q ss_pred             CceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHh
Q 010325          371 ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (513)
Q Consensus       371 ~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~  428 (513)
                      ..+.++.+.++.+..+.+...-      .+.+++.    ++|+++|+||.+|+++.+.
T Consensus       157 ~~~~v~~~~~l~~~~~~~~~~~------~~~~~Vv----~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          157 DVIVATPGERLKDVARTMVRNG------FRRLPVV----SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHT------CSEEEEE----ETTEEEEEEEHHHHHHHHT
T ss_pred             CCeEECCCCcHHHHHHHHHHcC------CCEEEEE----ECCEEEEEEEHHHHHHHHh
Confidence            5678888888877666655321      2223443    5789999999999999875

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.68  E-value=4.3e-17  Score=140.86  Aligned_cols=100  Identities=11%  Similarity=0.227  Sum_probs=90.9

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeC
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vp  305 (513)
                      .+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++........+++++|.+++.+++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            368999997  788999999999 99999999999999999865 89999999999997654445689999889999999


Q ss_pred             CCCCHHHHHHHHHhCCceEEEEEe
Q 010325          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       306 e~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd  100 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVD  100 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEEC
Confidence            999999999999999999999999

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.68  E-value=4.6e-17  Score=146.17  Aligned_cols=105  Identities=17%  Similarity=0.189  Sum_probs=93.2

Q ss_pred             hcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------Ccc
Q 010325          221 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TET  291 (513)
Q Consensus       221 l~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------~~~  291 (513)
                      ..|.+.+|+++|+|..+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....         ...
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~   87 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEM   87 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGC
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcC
Confidence            3467789999999977899999999998 99999999999999999865 899999999999875421         246


Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++|.++++++++++++.++++.|.+++.  +||+|
T Consensus        88 ~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd  123 (150)
T 3lqn_A           88 KVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN  123 (150)
T ss_dssp             BGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC
T ss_pred             CHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC
Confidence            7899988899999999999999999999886  99999

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.66  E-value=1.8e-16  Score=138.84  Aligned_cols=101  Identities=14%  Similarity=0.194  Sum_probs=91.4

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc---cccccccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRR  300 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~---~~v~dim~~~  300 (513)
                      .+.+|+++|++  ++.++++++++. ++++.|.+++++.+||+++  ++++|+|+.+|++....+..   .+++++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            56799999997  788899999999 9999999999999999986  89999999999997654322   5689998889


Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd  106 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLAD  106 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEEC
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEEC
Confidence            99999999999999999999999999999

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.66  E-value=4.2e-16  Score=137.73  Aligned_cols=104  Identities=13%  Similarity=0.235  Sum_probs=91.6

Q ss_pred             hcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc-cCC---CCccccccc
Q 010325          221 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRP---ETETPVSAV  296 (513)
Q Consensus       221 l~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~-~~~---~~~~~v~di  296 (513)
                      +.|.+.+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++. ...   ....++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999986  888999999999 99999999999999999854 89999999999973 322   134678999


Q ss_pred             ccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       297 m~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      |.++++++++++++.++++.|.+++.+.+ |+|
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd  109 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE  109 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC
Confidence            88899999999999999999999999989 999

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.66  E-value=1.3e-16  Score=147.01  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=91.8

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC------------------
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR------------------  286 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~------------------  286 (513)
                      ..+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            468999999988899999999999 99999999999999999865 7999999999998531                  


Q ss_pred             -------------CCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          287 -------------PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       287 -------------~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                                   .....+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  136 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD  136 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC
Confidence                         1124678899888889999999999999999999999999999

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.66  E-value=2.5e-16  Score=138.26  Aligned_cols=102  Identities=16%  Similarity=0.233  Sum_probs=91.2

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIR  299 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~~~~~v~dim~~  299 (513)
                      |++.+|+++|++  +++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++....   ....+++++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999997  788899999998 999999999999999998 4 79999999999986432   124688999888


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  105 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence            899999999999999999999999999999

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=1.2e-16  Score=146.50  Aligned_cols=110  Identities=12%  Similarity=0.177  Sum_probs=97.2

Q ss_pred             HHhhcCcccccccccccC-ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCcc
Q 010325          218 SGALDLTEKTAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETET  291 (513)
Q Consensus       218 ~~vl~l~~~~V~dIMtPr-~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-----~~~~  291 (513)
                      +....+...+|+++|+|+ .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....     ....
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   93 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQ   93 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTS
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccC
Confidence            345668889999999985 5788999999999 99999999999999999865 89999999999986422     1246


Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        94 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  131 (165)
T 3fhm_A           94 SVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE  131 (165)
T ss_dssp             BGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            89999889999999999999999999999999999999

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.64  E-value=1.2e-16  Score=143.69  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=92.6

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Ccccccccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~  301 (513)
                      .+|+++|+|+.+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.....    ...++.++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999888899999999999 99999999999999999865 899999999999875332    3467899988889


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++|++++++.++++.|.+++.+.+||+|
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVAD  133 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEec
Confidence            9999999999999999999999999999

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.64  E-value=3.5e-16  Score=139.10  Aligned_cols=99  Identities=11%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC--cEEEEEEhhhhhccCC---CCccccccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--NIIGLLLVKSLLTVRP---ETETPVSAVSIRR  300 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d--~ivGiV~~kDLl~~~~---~~~~~v~dim~~~  300 (513)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ +  +++|+|+.+|++....   ..+.++.++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCC
Confidence            679999996  889999999999 99999999999999999864 5  8999999999986532   1246889998899


Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++ ++.++++.|.+++.+.+||+|
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd  108 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVN  108 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEc
Confidence            9999999 999999999999999999999

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.64  E-value=2.1e-16  Score=143.64  Aligned_cols=104  Identities=18%  Similarity=0.260  Sum_probs=91.9

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------Cccc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETP  292 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------~~~~  292 (513)
                      .+.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            577899999999877899999999999 99999999999999999865 799999999999865322         2467


Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++|.+++++|++++++.++++.|.+++.  +||+|
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd  122 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN  122 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe
Confidence            889988899999999999999999998876  99999

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.64  E-value=4.1e-16  Score=137.46  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=89.7

Q ss_pred             ccccccccC-ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc-cCC----CCccccccccccc
Q 010325          227 TAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRP----ETETPVSAVSIRR  300 (513)
Q Consensus       227 ~V~dIMtPr-~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~-~~~----~~~~~v~dim~~~  300 (513)
                      +|+++|+|+ .+++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++. ...    ....++.++|.++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ   83 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCS
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCC
Confidence            899999976 6899999999999 999999999999999997 3 79999999999985 221    1346899998889


Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  112 (135)
T 2rc3_A           84 VAYVDLNNTNEDCMALITEMRVRHLPVLD  112 (135)
T ss_dssp             CCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CeEECCCCcHHHHHHHHHHhCCCEEEEEe
Confidence            99999999999999999999999999998

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.63  E-value=7.3e-16  Score=135.99  Aligned_cols=103  Identities=17%  Similarity=0.318  Sum_probs=90.9

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhh-hccCCC---Cccccccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL-LTVRPE---TETPVSAVSI  298 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDL-l~~~~~---~~~~v~dim~  298 (513)
                      |.+.+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+ +.....   ...+++++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            568899999986  788899999998 99999999999999999865 899999999999 764322   3467899988


Q ss_pred             ccceeeCCCCCHHHHHHHHHhCC-----ceEEEEEe
Q 010325          299 RRIPRVPSDMPLYDILNEFQKGS-----SHMAAVVK  329 (513)
Q Consensus       299 ~~~~~Vpe~~~l~d~L~~m~~~~-----~~~a~VVD  329 (513)
                      +++.++++++++.++++.|.+++     .+.+||+|
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd  116 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD  116 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC
Confidence            88999999999999999999999     99999999

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.63  E-value=6.4e-16  Score=139.90  Aligned_cols=101  Identities=11%  Similarity=0.156  Sum_probs=90.4

Q ss_pred             cccccccccC----ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----Cccccccc
Q 010325          226 KTAEEAMTPI----ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAV  296 (513)
Q Consensus       226 ~~V~dIMtPr----~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~di  296 (513)
                      ++|+++|+|+    .+++++++++++. ++++.|.+++++++||.+  .++++|+|+.+|++.....     ...+++++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999987    6889999999999 999999999999999964  3899999999999875321     34688999


Q ss_pred             ccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       297 m~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      |.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        84 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  116 (157)
T 4fry_A           84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD  116 (157)
T ss_dssp             SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            888999999999999999999999999999998

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.63  E-value=6.6e-17  Score=159.76  Aligned_cols=179  Identities=17%  Similarity=0.198  Sum_probs=123.6

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeC
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vp  305 (513)
                      ++|+++|++  +++++++++++. ++++.+.+++++++||++++ ++++|+++.+|++....  +.+++++|.+++++++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            368999995  888999999999 99999999999999999864 89999999999986543  4678899888889999


Q ss_pred             CCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcc-ccccCCCCCCCCccccccccccCCceEecCCCCCccc
Q 010325          306 SDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK-LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSG  384 (513)
Q Consensus       306 e~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile-~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~  384 (513)
                      +++++.++++.|.+++.+.+||+|++|.+.|++  |.+|+++ .+.+...  ....+..  .-+..+.+.++.+.++.+.
T Consensus        75 ~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Gii--t~~di~~~~~~~~~~--~~~~~v~--~~m~~~~~~v~~~~~l~~~  148 (282)
T 2yzq_A           75 ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL--TVGDIIRRYFAKSEK--YKGVEIE--PYYQRYVSIVWEGTPLKAA  148 (282)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHHHHTTTTCSG--GGGCBST--TTSBSCCCCEETTSBHHHH
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEE--EHHHHHHHHHhccCC--cccCcHH--HHhCCCCEEECCCCCHHHH
Confidence            999999999999999999999999999999999  9999998 6664311  1111111  1234566888999888777


Q ss_pred             cccccccccCCCCccccccccccccCCCccceecchHHHHH
Q 010325          385 SMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE  425 (513)
Q Consensus       385 ~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~e  425 (513)
                      .+.+...-      +.++++..   ++|+++|+||..|+++
T Consensus       149 ~~~~~~~~------~~~l~Vvd---~~~~~~Giit~~dl~~  180 (282)
T 2yzq_A          149 LKALLLSN------SMALPVVD---SEGNLVGIVDETDLLR  180 (282)
T ss_dssp             HHHHHTCS------SSEEEEEC---TTSCEEEEEEGGGGGG
T ss_pred             HHHHHHcC------CcEEEEEc---CCCeEEEEEEHHHHhh
Confidence            76665321      23344420   4689999999999984

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.62  E-value=2e-16  Score=159.85  Aligned_cols=187  Identities=16%  Similarity=0.200  Sum_probs=141.8

Q ss_pred             cccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC----cEEEEEEhhhhhccCC-------CCccccccc
Q 010325          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK----NIIGLLLVKSLLTVRP-------ETETPVSAV  296 (513)
Q Consensus       228 V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d----~ivGiV~~kDLl~~~~-------~~~~~v~di  296 (513)
                      +.++|++  +++++++++++. ++++.|.+++++++||++++.+    +++|+++.+|++....       ....+++++
T Consensus       116 ~~~~~~~--~~v~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~  192 (323)
T 3t4n_C          116 ALGVDQL--DTASIHPSRPLF-EACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL  192 (323)
T ss_dssp             HTTC------CCCBCTTSBHH-HHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGT
T ss_pred             HhCCCCC--CceEeCCCCcHH-HHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHc
Confidence            4556664  888999999998 9999999999999999986522    3999999999985421       123578888


Q ss_pred             ---ccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCccccccccccC---
Q 010325          297 ---SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKT---  370 (513)
Q Consensus       297 ---m~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~---  370 (513)
                         |.++++++++++++.++++.|.+++.+.+||+|++|.++|++  |.+|+++.+.+.... .++.+....+....   
T Consensus       193 ~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Gii--t~~dl~~~~~~~~~~-~~~~~v~~~m~~~~~~~  269 (323)
T 3t4n_C          193 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY--EAYDVLGLIKGGIYN-DLSLSVGEALMRRSDDF  269 (323)
T ss_dssp             TCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--ETTHHHHHHHTTHHH-HTTSBHHHHGGGSCTTC
T ss_pred             CCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEE--eHHHHHHHHhhchhh-hccCCHHHHHhhccccC
Confidence               778899999999999999999999999999999999999999  999999887654321 11223333333222   


Q ss_pred             -CceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhc
Q 010325          371 -ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (513)
Q Consensus       371 -~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~  429 (513)
                       +.+.++.+.++.+..+.+....      ++.+++..   ++|+++||||..||++.+++
T Consensus       270 ~~~~~v~~~~~l~~~~~~m~~~~------~~~l~Vvd---~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          270 EGVYTCTKNDKLSTIMDNIRKAR------VHRFFVVD---DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             CCCEEECTTCBHHHHHHHHHHSC------CCEEEEEC---TTSBEEEEEEHHHHHHHHHH
T ss_pred             CCCEEECCCCCHHHHHHHHHHhC------CCEEEEEC---CCCcEEEEEEHHHHHHHHHh
Confidence             5789999999988777666432      22234310   47899999999999999986

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.62  E-value=2.3e-16  Score=157.50  Aligned_cols=184  Identities=20%  Similarity=0.183  Sum_probs=147.3

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-------------
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------  288 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-------------  288 (513)
                      +....+|+|+|++  +++++++++++. ++++.|.+++++++||++   ++++|+++.+|++.....             
T Consensus        16 ~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~   89 (296)
T 3ddj_A           16 YFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYH   89 (296)
T ss_dssp             TTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHH
T ss_pred             hhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhHH
Confidence            4567899999997  889999999998 999999999999999997   799999999999976521             


Q ss_pred             -CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCcccccccc
Q 010325          289 -TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (513)
Q Consensus       289 -~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~  367 (513)
                       ...+++++|.++++++++++++.++++.|.+++.+.+||+|+.|.++|++  |.+|+++.+.+.....    +....  
T Consensus        90 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGiv--t~~dl~~~~~~~~~~~----~v~~~--  161 (296)
T 3ddj_A           90 ISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIV--TEREFLLLYKDLDEIF----PVKVF--  161 (296)
T ss_dssp             HHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHGGGGGGSCCCC----BHHHH--
T ss_pred             HhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE--eHHHHHHhhhcccccc----cHHHh--
Confidence             13578999988999999999999999999999999999999999999999  9999998775443322    11111  


Q ss_pred             ccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHh
Q 010325          368 EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (513)
Q Consensus       368 ~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~  428 (513)
                      +....+.++.+.++.+..+.+...-      ...+++..   ++|+++|+||.+|+++.+.
T Consensus       162 m~~~~~~v~~~~~l~~~~~~m~~~~------~~~~~Vvd---~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          162 MSTKVQTIYKEVRLDQAVKLMLRRG------FRRLPVID---DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             SBCSCCCEETTSBHHHHHHHHHHHT------CSEEEEEC---TTSCEEEEEEHHHHHHHHH
T ss_pred             hcCCCeEECCCCCHHHHHHHHHHcC------CCEEEEEc---CCCEEEEEEEHHHHHHHHH
Confidence            2345678888888877666655321      12233310   4789999999999998875

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.61  E-value=1.3e-15  Score=138.20  Aligned_cols=102  Identities=21%  Similarity=0.272  Sum_probs=90.9

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCce-eeeeeCCCCcEEEEEEhhhhhccC--------------
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR-VPVYSGNPKNIIGLLLVKSLLTVR--------------  286 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr-~PV~~~~~d~ivGiV~~kDLl~~~--------------  286 (513)
                      .+...+|+++|++  +++++++++++. ++++.|.++++++ +||++++  +++|+|+.+||+...              
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            4677889999997  899999999999 9999999999999 9999864  899999999998641              


Q ss_pred             -----CCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          287 -----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       287 -----~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                           .....++.++|.+ +++|++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD  133 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc
Confidence                 1234678899877 88999999999999999999999999999

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.61  E-value=1.7e-15  Score=137.77  Aligned_cols=102  Identities=18%  Similarity=0.219  Sum_probs=90.3

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CCccccccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSI  298 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~----~~~~~v~dim~  298 (513)
                      +.+++|+++|++  . +++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....    ....++.++|.
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            467899999985  3 4899999999 99999999999999999865 89999999999987431    23468999987


Q ss_pred             c--cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          299 R--RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       299 ~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +  ++++|++++++.++++.|.+++.+.+||+|
T Consensus        89 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  121 (159)
T 3fv6_A           89 RMPNITVCRREDYVMDIAKHLIEKQIDALPVIK  121 (159)
T ss_dssp             ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe
Confidence            7  889999999999999999999999999999

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.61  E-value=8.4e-16  Score=151.77  Aligned_cols=188  Identities=16%  Similarity=0.166  Sum_probs=137.4

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc-cCCCC----ccccccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRPET----ETPVSAVSI  298 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~-~~~~~----~~~v~dim~  298 (513)
                      .+.+++++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++. .....    ..+++++|.
T Consensus        58 ~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~  133 (282)
T 2yzq_A           58 DEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQ  133 (282)
T ss_dssp             ------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSB
T ss_pred             ccCCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccCCcccCcHHHHhC
Confidence            35789999997  678899999998 99999999999999999865 78999999999987 54432    457889888


Q ss_pred             ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCc------cccc-------cC-------C----C
Q 010325          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP------KLNE-------AK-------G----G  354 (513)
Q Consensus       299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dil------e~i~-------g~-------~----~  354 (513)
                      ++++++++++++.++++.|.+++.+.+||+|++|.+.|++  |.+|++      +...       +.       .    .
T Consensus       134 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Gii--t~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (282)
T 2yzq_A          134 RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIV--DETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLF  211 (282)
T ss_dssp             SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEE--EGGGGGGCGGGCC-------------------------
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE--EHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHH
Confidence            8899999999999999999999999999999999999999  999998      3331       00       0    0


Q ss_pred             ----CCCCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHh
Q 010325          355 ----DCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (513)
Q Consensus       355 ----~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~  428 (513)
                          ......|....  +......++.+.++.+..+.+....      ++.+++..   ++|+++||||..||++.+.
T Consensus       212 ~~~~~~~~~~~v~~i--m~~~~~~v~~~~~l~~a~~~m~~~~------~~~lpVvd---~~~~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          212 EKFELQLPNKPVAEI--MTRDVIVATPHMTVHEVALKMAKYS------IEQLPVIR---GEGDLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             -------CCCBGGGT--CBSSCCCBCTTSBHHHHHHHHHHHT------CSEEEEEE---TTTEEEEEEEHHHHGGGGC
T ss_pred             hHhhhhhccCCHHHh--cCCCCceeCCCCCHHHHHHHHHHcC------cceeEEEC---CCCCEEEEEeHHHHHHHHH
Confidence                00011122222  3345678888888877666654321      22344420   3479999999999998776

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.60  E-value=1.3e-15  Score=131.81  Aligned_cols=99  Identities=14%  Similarity=0.205  Sum_probs=88.1

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Ccccccccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~  301 (513)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++.....    ...++.++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            368999997  888999999999 999999999999999998 4 899999999999864211    2467899988899


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  103 (125)
T 1pbj_A           76 VTISPRATIKEAAEKMVKNVVWRLLVEE  103 (125)
T ss_dssp             GEECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHhcCCcEEEEEE
Confidence            9999999999999999999999999999

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.60  E-value=1.7e-15  Score=141.24  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=90.3

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCccccccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRR  300 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-----~~~~~v~dim~~~  300 (513)
                      .+|+++|++  ++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+|++....     ....+++++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            689999986  888999999999 99999999999999999865 79999999999987532     2346789998888


Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++|++++++.++++.|.+++.+.+||+|
T Consensus        85 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  113 (184)
T 1pvm_A           85 IPKVKSDYDVKDVAAYLSENGLERCAVVD  113 (184)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcEECCCCCHHHHHHHHHHcCCcEEEEEc
Confidence            99999999999999999999999999999

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.59  E-value=2.5e-15  Score=136.95  Aligned_cols=102  Identities=24%  Similarity=0.256  Sum_probs=90.7

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC------------CCcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------------ETET  291 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~------------~~~~  291 (513)
                      ...+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+....            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            46789999997  788899999998 99999999999999999864 78999999999986421            2346


Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  116 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  116 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE
Confidence            78899888999999999999999999999999999999

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.59  E-value=9.9e-16  Score=134.46  Aligned_cols=103  Identities=14%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc-cCCC----Ccccccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRPE----TETPVSAVS  297 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~-~~~~----~~~~v~dim  297 (513)
                      +.-.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++. ....    ...+++++|
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA   80 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHh
Confidence            344689999986  788899999999 99999999999999999754 89999999999983 3221    246789998


Q ss_pred             cccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       298 ~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  112 (133)
T 1y5h_A           81 RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS  112 (133)
T ss_dssp             TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            88999999999999999999999999999999

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.59  E-value=2.1e-15  Score=139.72  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             CcccccccccccCcc--EEEE--eCCCCccHHHHHHHHhcCCceeeeee-CCCCcEEEEEEhhhhhccCC----------
Q 010325          223 LTEKTAEEAMTPIES--TFSL--DVNSKLDWEAMGKILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRP----------  287 (513)
Q Consensus       223 l~~~~V~dIMtPr~~--vv~v--~~d~sl~~eal~~i~~~~~sr~PV~~-~~~d~ivGiV~~kDLl~~~~----------  287 (513)
                      +.+.+|+++|+|..+  ++++  ++++++. ++++.|.+++++++||++ ++.++++|+|+.+|++....          
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            367899999998643  7778  9999998 999999999999999994 33489999999999986421          


Q ss_pred             ------------------CCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          288 ------------------ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       288 ------------------~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                                        ....++.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  146 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  146 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE
Confidence                              224678899888999999999999999999999999999998

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.59  E-value=1.8e-15  Score=137.25  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             HHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEhhhhhccCCC--------
Q 010325          218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPE--------  288 (513)
Q Consensus       218 ~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~-~~d~ivGiV~~kDLl~~~~~--------  288 (513)
                      .+.+.+.+.+|+++|++  ++++++.++++. ++++.|.+++++++||+++ +.++++|+|+.+|++.....        
T Consensus         5 ~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~   81 (164)
T 2pfi_A            5 GRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG   81 (164)
T ss_dssp             -----CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred             cccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence            44566788999999997  788899999998 9999999999999999986 34899999999999864321        


Q ss_pred             Cccccccccccc------ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          289 TETPVSAVSIRR------IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       289 ~~~~v~dim~~~------~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ...++.++|..+      +.++++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  128 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS  128 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE
Confidence            124677877665      68899999999999999999999999998

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.58  E-value=1.9e-15  Score=133.89  Aligned_cols=103  Identities=15%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             Cccccccc---ccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----Cccccc
Q 010325          223 LTEKTAEE---AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVS  294 (513)
Q Consensus       223 l~~~~V~d---IMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~  294 (513)
                      +-+.++++   +|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....     ...++.
T Consensus         5 ~~~~~v~~~~~~~~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~   80 (144)
T 2nyc_A            5 FLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG   80 (144)
T ss_dssp             GGGSBGGGSSCCBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHH
T ss_pred             hhhcchhhcCCCCCC--CceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHH
Confidence            45677888   7774  888999999999 99999999999999999865 899999999999864322     246788


Q ss_pred             ccccc------cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          295 AVSIR------RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       295 dim~~------~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++|.+      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  121 (144)
T 2nyc_A           81 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  121 (144)
T ss_dssp             HHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence            88765      688999999999999999999999999999

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.55  E-value=2.1e-14  Score=137.56  Aligned_cols=99  Identities=12%  Similarity=0.060  Sum_probs=89.8

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceee
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~V  304 (513)
                      .-+++++|++  ++++++++.++. ++++.|.+++++++||++++ ++++|+|+.+|++....  +.+++++|.++++++
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v   85 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFV   85 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCE
T ss_pred             ccCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEE
Confidence            4578999986  888999999999 99999999999999999864 89999999999987643  567999998899999


Q ss_pred             CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          305 PSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       305 pe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++++.++++.|.+++.+.+||+|
T Consensus        86 ~~~~~l~~a~~~m~~~~~~~lpVvd  110 (213)
T 1vr9_A           86 HEEDNITHALLLFLEHQEPYLPVVD  110 (213)
T ss_dssp             ETTSBHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEc
Confidence            9999999999999999999999999

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.54  E-value=4e-15  Score=150.92  Aligned_cols=188  Identities=17%  Similarity=0.200  Sum_probs=142.5

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----------Cccccccc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------TETPVSAV  296 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----------~~~~v~di  296 (513)
                      +++++|++  +++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++.....          ...+++++
T Consensus       119 ~~~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~  195 (330)
T 2v8q_E          119 VYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEEL  195 (330)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHH
T ss_pred             HHhhcccC--CceEeCCCCCHH-HHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHh
Confidence            45688986  788999999998 999999999999999998624899999999999864311          01234443


Q ss_pred             --cc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCcccccccc----cc
Q 010325          297 --SI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD----EK  369 (513)
Q Consensus       297 --m~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~----~~  369 (513)
                        |. ++++++++++++.++++.|.+++.+.+||+|+.|.+.|++  |.+|+++.+.+..... ++.+......    +.
T Consensus       196 ~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Gii--t~~dl~~~~~~~~~~~-~~~~v~~~~~~~~~~~  272 (330)
T 2v8q_E          196 QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY--SKFDVINLAAEKTYNN-LDVSVTKALQHRSHYF  272 (330)
T ss_dssp             TCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE--EGGGTGGGGGSSCCCC-CSSBHHHHGGGCCSCC
T ss_pred             cccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEE--EHHHHHHHHhcccccc-ccCcHHHHHhcccccc
Confidence              32 6788999999999999999999999999999999999999  9999999887553322 1223322222    13


Q ss_pred             CCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhc
Q 010325          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (513)
Q Consensus       370 ~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~  429 (513)
                      ...+.++.+.++.+..+.+...-      ++.+++..   ++|+++||||..||++.+..
T Consensus       273 ~~~~~v~~~~~l~~a~~~m~~~~------~~~l~Vvd---~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          273 EGVLKCYLHETLEAIINRLVEAE------VHRLVVVD---EHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             CSCCEECTTSBHHHHHHHHHHHT------CSEEEEEC---TTSBEEEEEEHHHHHHHHHS
T ss_pred             CCCeEECCCCcHHHHHHHHHHCC------CcEEEEEc---CCCcEEEEEeHHHHHHHHHh
Confidence            56789999999887776665321      12233310   46899999999999999873

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.54  E-value=1.6e-14  Score=155.59  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=122.4

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~-----~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                      ..++++|+...+..    ++..|.|.     +++++++++++++     +++|++  +++++++++++. ++++.|.+++
T Consensus        53 ~~vt~~eLa~av~~----~Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~  120 (491)
T 1zfj_A           53 DTVTGSKMAIAIAR----AGGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYR  120 (491)
T ss_dssp             TTTCSHHHHHHHHH----TTCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTT
T ss_pred             hhccHHHHHHHHHH----cCCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcC
Confidence            34677899988862    22223344     6788889888765     679997  888999999998 9999999999


Q ss_pred             CceeeeeeC-CCCcEEEEEEhhhhhccCCCCcccccccccc-cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccC
Q 010325          260 HSRVPVYSG-NPKNIIGLLLVKSLLTVRPETETPVSAVSIR-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (513)
Q Consensus       260 ~sr~PV~~~-~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~-~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Gi  337 (513)
                      ++++||+++ +.++++|+|+.+|++... ..+.+++++|.+ ++++|++++++.++++.|++++.+.+||||++|.++|+
T Consensus       121 ~~~~pVvd~~~~~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGi  199 (491)
T 1zfj_A          121 ISGVPIVETLANRKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGL  199 (491)
T ss_dssp             CSEEEEESCTTTCBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            999999982 348999999999998643 346789999877 88999999999999999999999999999976666666


Q ss_pred             CCCCCCCCccccc
Q 010325          338 PPMTDGKKPKLNE  350 (513)
Q Consensus       338 v~~T~~dile~i~  350 (513)
                      +  |.+|+++.+.
T Consensus       200 v--t~~Dil~~~~  210 (491)
T 1zfj_A          200 I--TIKDIEKVIE  210 (491)
T ss_dssp             E--EHHHHHHHHH
T ss_pred             E--EHHHHHHHHh
Confidence            6  6666665554

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.53  E-value=2.1e-15  Score=153.12  Aligned_cols=188  Identities=12%  Similarity=0.127  Sum_probs=142.9

Q ss_pred             ccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCc----EEEEEEhhhhhccCCC-------Ccccccc--
Q 010325          229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN----IIGLLLVKSLLTVRPE-------TETPVSA--  295 (513)
Q Consensus       229 ~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~----ivGiV~~kDLl~~~~~-------~~~~v~d--  295 (513)
                      +++|++..+++++++++++. ++++.|.+++++++||++++.++    ++|+++.+|++.....       ...++++  
T Consensus       110 ~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~  188 (334)
T 2qrd_G          110 RKIGAIPPETIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMT  188 (334)
T ss_dssp             HHHTCSCSSCCCBCTTSBHH-HHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSS
T ss_pred             HhhccCCCceeeeCCCCcHH-HHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhC
Confidence            45787655568899999998 99999999999999999865345    9999999999864321       1356777  


Q ss_pred             -cccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCcccccccccc----C
Q 010325          296 -VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK----T  370 (513)
Q Consensus       296 -im~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~----~  370 (513)
                       +|.+++.++++++++.++++.|.+++.+.+||+|++|.+.|++  |.+|+++.+.+..... ...+....+...    .
T Consensus       189 ~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Gii--t~~dl~~~~~~~~~~~-~~~~v~~~m~~~~~~~~  265 (334)
T 2qrd_G          189 IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVY--ESVDVMHLIQDGDYSN-LDLSVGEALLKRPANFD  265 (334)
T ss_dssp             CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--ETHHHHHHHTTSCGGG-GGSBHHHHHTTCCTTCC
T ss_pred             CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEE--EHHHHHHHhhcccccc-ccCcHHHHHhcccccCC
Confidence             4778899999999999999999999999999999999999999  9999998876543211 122222222211    3


Q ss_pred             CceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhc
Q 010325          371 ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (513)
Q Consensus       371 ~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~  429 (513)
                      +.+.++.+.++.+..+.+...-      ++.+++..   ++|+++||||..||++.+.+
T Consensus       266 ~~~~v~~~~~l~~~~~~m~~~~------~~~l~Vvd---~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          266 GVHTCRATDRLDGIFDAIKHSR------VHRLFVVD---ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             CCCEECTTCBHHHHHHHHHHSC------CCEEEEEC---TTCBEEEEEEHHHHHHHHHS
T ss_pred             CCEEECCCCcHHHHHHHHHHcC------CCEEEEEC---CCCeEEEEEeHHHHHHHHHh
Confidence            6788999999988777765432      22233310   46899999999999999884

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.52  E-value=2.3e-14  Score=154.83  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=121.2

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~-----~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                      ...+++++...+...+    .-|.|.     +++.+++++++.     .+++|++  +++++++++++. ++++.|.+++
T Consensus        76 dtvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~  143 (511)
T 3usb_A           76 DTVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYR  143 (511)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHC
T ss_pred             hhhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcC
Confidence            3467888877764221    113332     455667888875     4567875  888999999999 9999999999


Q ss_pred             CceeeeeeC-CCCcEEEEEEhhhhhccCCCCcccccccccc-cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccC
Q 010325          260 HSRVPVYSG-NPKNIIGLLLVKSLLTVRPETETPVSAVSIR-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (513)
Q Consensus       260 ~sr~PV~~~-~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~-~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Gi  337 (513)
                      ++++||+++ ..++++|+|+.+||+.. ...+.+++++|.+ ++++|++++++.++++.|++++.+.+||||++|.+.|+
T Consensus       144 ~s~~pVvd~g~~~~lvGiVt~rDl~~~-~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~Gi  222 (511)
T 3usb_A          144 ISGVPVVNNLDERKLVGIITNRDMRFI-QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGL  222 (511)
T ss_dssp             CSEEEEESCTTTCBEEEEEEHHHHTTC-CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             CcEEEEEecCCCCEEEEEEEehHhhhh-ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeee
Confidence            999999986 13899999999999853 3345789999887 89999999999999999999999999999988888888


Q ss_pred             CCCCCCCCccccc
Q 010325          338 PPMTDGKKPKLNE  350 (513)
Q Consensus       338 v~~T~~dile~i~  350 (513)
                      +  |.+|+++.+.
T Consensus       223 I--T~~Dil~~~~  233 (511)
T 3usb_A          223 I--TIKDIEKVIE  233 (511)
T ss_dssp             E--EHHHHHHHHH
T ss_pred             c--cHHHHHHhhh
Confidence            8  7777777765

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.52  E-value=4.7e-15  Score=164.44  Aligned_cols=124  Identities=19%  Similarity=0.090  Sum_probs=109.0

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHH-hcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc------------
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL-ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE------------  290 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~-~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~------------  290 (513)
                      .+.+|+|+|+||+++++++++++++ |+.+.+. +++++++||+|++ ++++|+|+.+|++.......            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999999999999999999 9999999 7999999999874 89999999999987532210            


Q ss_pred             ---------------------------------------ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecC
Q 010325          291 ---------------------------------------TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK  331 (513)
Q Consensus       291 ---------------------------------------~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~  331 (513)
                                                             .+++++|.+++.+|++++++.++++.|++++.+.+||+ |+
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~  607 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence                                                   02778899999999999999999999999999999999 89


Q ss_pred             CCcccCCCCCCCCCccccccC
Q 010325          332 GKSKTLPPMTDGKKPKLNEAK  352 (513)
Q Consensus       332 G~~~Giv~~T~~dile~i~g~  352 (513)
                      |+++|++  |.+|+++.+.++
T Consensus       608 G~lvGIV--T~~Dll~~~~~~  626 (632)
T 3org_A          608 GKLVGIV--EREDVAYGYSNS  626 (632)
T ss_dssp             TEEEEEE--EGGGTEECCCC-
T ss_pred             CEEEEEE--ehhhHHHHHhhh
Confidence            9999999  999999887643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.51  E-value=3.9e-15  Score=160.36  Aligned_cols=150  Identities=16%  Similarity=0.217  Sum_probs=113.7

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCC-----ChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGEL-----THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L-----~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                      ..++++++...+...    +.-|.|     .++++++++++     ++++++|++  +++++++++++. ++++.|.+++
T Consensus        52 dtVTe~~ma~a~a~~----GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQE----GGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHH----TCEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHc----CCcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcC
Confidence            456788988887522    112334     56788999998     456789985  889999999999 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccc-c-cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccC
Q 010325          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-R-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (513)
Q Consensus       260 ~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~-~-~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Gi  337 (513)
                      |+++||++++ ++++|+|+.+||+.. ...+.+++++|. + +++++++++++.++++.|++++.+.+|||||+|.++|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rDL~~~-~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~Gi  197 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRDVRFV-TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGM  197 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHHHTTC-CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEE
T ss_pred             CcEEEEEccC-CEEEEEEEHHHHhhc-ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEe
Confidence            9999999875 899999999999843 234578999976 4 58999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccc
Q 010325          338 PPMTDGKKPKLNE  350 (513)
Q Consensus       338 v~~T~~dile~i~  350 (513)
                      +  |.+|+++...
T Consensus       198 I--T~~DIl~~~~  208 (496)
T 4fxs_A          198 I--TAKDFHKAES  208 (496)
T ss_dssp             E--CCC-----CC
T ss_pred             e--hHhHHHHhhc
Confidence            9  9999998754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.46  E-value=9.3e-14  Score=150.87  Aligned_cols=102  Identities=13%  Similarity=0.168  Sum_probs=89.0

Q ss_pred             CcccccccccccCccEEEEeCC-CCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVN-SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVS  297 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d-~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~----~~~~~~v~dim  297 (513)
                      +.+.+|+++|++  ++++++++ +++. ++++.|.+++++++||++++.++++|+|+.+||+...    .....+++++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            567899999996  88899999 9999 9999999999999999983348999999999998542    22357899999


Q ss_pred             cccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       298 ~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .+++++|++++++.++++.|.+++  ++||||
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd  487 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILG  487 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEE
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEe
Confidence            999999999999999999997766  479999

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.45  E-value=1.1e-14  Score=157.22  Aligned_cols=153  Identities=10%  Similarity=0.087  Sum_probs=20.4

Q ss_pred             cccHHHHHHHHHHhhhhhccCCC----CC-hhHHHHHHHhhcCcccccccc-cccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          186 LFRRAQLKALVTIHSQEAGKGGE----LT-HDETTIISGALDLTEKTAEEA-MTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~~~g~----L~-~~E~~~I~~vl~l~~~~V~dI-MtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                      ..+++++...+...    ...|.    ++ ++++++++++..      .++ |++  +++++++++++. ++++.|.+++
T Consensus        61 ~vt~~~la~~la~~----gg~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~  127 (503)
T 1me8_A           61 SVSGEKMAIALARE----GGISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTT  127 (503)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHT------TTC-----------------------------
T ss_pred             hhhHHHHHHHHHhC----CCcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcC
Confidence            45678887777521    11111    22 466777777654      345 997  899999999999 9999999999


Q ss_pred             CceeeeeeCC--CCcEEEEEEhhhhhccCCCCccccccccccc--ceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 010325          260 HSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK  335 (513)
Q Consensus       260 ~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~--~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~  335 (513)
                      ++++||++++  .++++|+|+.+|++......+.+++++|.++  +++|++++++.++++.|++++.+.+||||++|.++
T Consensus       128 ~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lv  207 (503)
T 1me8_A          128 HNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLR  207 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEE
Confidence            9999999864  3799999999999853223356899998776  99999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCC
Q 010325          336 TLPPMTDGKKPKLNEAKG  353 (513)
Q Consensus       336 Giv~~T~~dile~i~g~~  353 (513)
                      |++  |.+|+++.+....
T Consensus       208 GiI--T~~Dil~~~~~~~  223 (503)
T 1me8_A          208 YIV--FRKDYDRSQVCHN  223 (503)
T ss_dssp             ----------------CC
T ss_pred             EEE--EecHHHHhhhccc
Confidence            999  9999999887443

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.44  E-value=6.9e-14  Score=136.25  Aligned_cols=102  Identities=17%  Similarity=0.220  Sum_probs=88.5

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----------------
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------  288 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----------------  288 (513)
                      +.+|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....                
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            4689999986  788999999998 99999999999999999865 899999999999853210                


Q ss_pred             --------------------------------------------------------------------------------
Q 010325          289 --------------------------------------------------------------------------------  288 (513)
Q Consensus       289 --------------------------------------------------------------------------------  288 (513)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------Cccccccccc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEec
Q 010325          289 ---------------------TETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (513)
Q Consensus       289 ---------------------~~~~v~dim~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE  330 (513)
                                           ...+++++|. +++.++++++++.++++.|.+++.+.+||+|+
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~  225 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE  225 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC
Confidence                                 0235678887 89999999999999999999999999999993

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.43  E-value=1.7e-14  Score=155.29  Aligned_cols=146  Identities=13%  Similarity=0.196  Sum_probs=23.0

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCC
Q 010325          186 LFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH  260 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~~~g~L~-----~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~  260 (513)
                      ..+++|+...+..    ....|.+.     +++++++++++++++     +|++  +++++++++++. ++++.+.++++
T Consensus        57 ~vt~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~v~~~~~-----~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMAR----EGGLGVIHRNMGIEEQVEQVKRVKRAER-----LIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHH----TTCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHh----cCCceeecCCCCHHHHHHHHHhhcchhh-----cccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            4567888877752    11122343     577899999988754     6884  899999999999 99999999999


Q ss_pred             ceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCC
Q 010325          261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPM  340 (513)
Q Consensus       261 sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~  340 (513)
                      +++||+++  ++++|+|+.+||+.   ..+.+++++|.++++++++++++.++++.|++++.+.+||||++|.++|++  
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGii--  197 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI--  197 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEE--
Confidence            99999986  89999999999986   345789999888899999999999999999999999999999999999999  


Q ss_pred             CCCCCccccc
Q 010325          341 TDGKKPKLNE  350 (513)
Q Consensus       341 T~~dile~i~  350 (513)
                      |.+|+++.+.
T Consensus       198 T~~Dil~~~~  207 (486)
T 2cu0_A          198 TMSDLVARKK  207 (486)
T ss_dssp             ---------C
T ss_pred             EHHHHHHhhh
Confidence            9999998854

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.43  E-value=1.9e-13  Score=134.74  Aligned_cols=60  Identities=8%  Similarity=0.077  Sum_probs=53.8

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEhhhhhc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLT  284 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~-~d~ivGiV~~kDLl~  284 (513)
                      ...+++|+|+|++  +++++.+++++. ++.+.|.+++++++||++++ .++++|+|+.+||+.
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            3567899999996  899999999999 99999999999999999864 257999999999974

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.40  E-value=3.3e-14  Score=152.98  Aligned_cols=149  Identities=16%  Similarity=0.205  Sum_probs=22.8

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (513)
Q Consensus       185 ~~~s~eeL~~lv~~~~~e~~~~g~L~-----~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~  259 (513)
                      ..++++++...+...    +.-|.|.     ++++++++++.     +++++|++  +++++++++++. ++++.|.+++
T Consensus        51 ~tVTe~~lA~ala~~----GGiGvI~~~~~~e~~a~~v~~vk-----~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQE----GGIGIIHKNMGIEQQAAEVRKVK-----KHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHH----TSEEEECCSSCHHHHHHHHHHHH-----HCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHc----CCCccccCCCCHHHHHHHhhhhc-----ccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            346788888877522    1123333     56677888874     46788985  889999999999 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccc-c-cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccC
Q 010325          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-R-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (513)
Q Consensus       260 ~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~-~-~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Gi  337 (513)
                      ++++||++ + ++++|+|+.+||... ...+.+++++|. + +++++++++++.++++.|++++.+.+||||++|.++|+
T Consensus       119 ~s~~pVvd-~-g~lvGIVt~rDl~~~-~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGi  195 (490)
T 4avf_A          119 FSGFPVVE-Q-GELVGIVTGRDLRVK-PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGL  195 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEE-C-CEEEEEEEhHHhhhc-cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            99999998 3 899999999999743 234578999987 4 68999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccc
Q 010325          338 PPMTDGKKPKLNE  350 (513)
Q Consensus       338 v~~T~~dile~i~  350 (513)
                      +  |.+|+++...
T Consensus       196 I--T~~Dil~~~~  206 (490)
T 4avf_A          196 V--TFRDIEKAKT  206 (490)
T ss_dssp             -------------
T ss_pred             E--ehHHhhhhcc
Confidence            9  9999988754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.22  E-value=1.7e-12  Score=139.73  Aligned_cols=129  Identities=13%  Similarity=0.141  Sum_probs=12.2

Q ss_pred             HHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccc
Q 010325          213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETP  292 (513)
Q Consensus       213 E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~  292 (513)
                      .++.+++++.     ++++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.. ...+.+
T Consensus        87 ~~~~v~~v~~-----~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~-~~~~~~  156 (494)
T 1vrd_A           87 QARQVSIVKK-----TENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE-KNLSKK  156 (494)
T ss_dssp             HHHHHHHHHT-----C----------------------------------------------------------------
T ss_pred             HHHHHHhhhh-----HhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh-cCCCCc
Confidence            3455666654     5778986  889999999999 99999999999999999865 799999999999863 233568


Q ss_pred             ccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCC
Q 010325          293 VSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKG  353 (513)
Q Consensus       293 v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~  353 (513)
                      ++++|.+  ++++|++++++.++++.|.+++.+.+||||++|.++|++  |..|+++.+....
T Consensus       157 v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI--t~~Dll~~~~~~~  217 (494)
T 1vrd_A          157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI--TIKDIMSVIEHPN  217 (494)
T ss_dssp             ------------------------------------------------------CHHHHTCTT
T ss_pred             HHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE--EHHHHHhhhcccc
Confidence            9999887  899999999999999999999999999999999999999  9999988876443

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.16  E-value=5.4e-12  Score=134.26  Aligned_cols=127  Identities=12%  Similarity=0.212  Sum_probs=11.4

Q ss_pred             hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCC
Q 010325          211 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPE  288 (513)
Q Consensus       211 ~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~  288 (513)
                      +++.++++++.+++.-     |+  ++.+++.++.++. ++++++.+++++.+||+++.  .++++|||+.||+...  +
T Consensus       128 e~Qa~~V~~VKr~e~g-----~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d  197 (556)
T 4af0_A          128 EEQAAMVRRVKKYENG-----FI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D  197 (556)
T ss_dssp             HHHHHHHHHHHHCCC-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcccC-----cc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c
Confidence            3567889999887754     44  2788999999999 99999999999999999852  3789999999998753  4


Q ss_pred             CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcccc
Q 010325          289 TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (513)
Q Consensus       289 ~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i  349 (513)
                      ...+|+++|..++++++++.+++++.+.|++++...+||||+.|..+|++  |..|+.+..
T Consensus       198 ~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlI--T~kDi~k~~  256 (556)
T 4af0_A          198 AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLV--ARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEE--Eechhhhhh
Confidence            46789999999999999999999999999999999999999999999999  888886543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.05  E-value=2e-11  Score=132.16  Aligned_cols=120  Identities=12%  Similarity=0.196  Sum_probs=72.3

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCC-CCcccccccccc--cc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRP-ETETPVSAVSIR--RI  301 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~-~~~~~v~dim~~--~~  301 (513)
                      +++++|++  +++++++++++. ++++.|.+++++++||++++  .++++|+|+.+|+..... ....+++++|.+  ++
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~  185 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIEL  185 (514)
T ss_dssp             TCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBCC
T ss_pred             hhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCC
Confidence            68899986  788899999999 99999999999999999863  379999999999986421 234678999887  89


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcccccc
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEA  351 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g  351 (513)
                      +++++++++.++++.|.+++.+.+||||+.|.++|++  |.+|+++.+..
T Consensus       186 ~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI--t~~Dll~~~~~  233 (514)
T 1jcn_A          186 VVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAII--ARTDLKKNRDY  233 (514)
T ss_dssp             CCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC------CCCCSSCCCC
T ss_pred             eEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEE--EHHHHHHHhhC
Confidence            9999999999999999999999999999999999999  99999988753

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.49  E-value=1.8e-07  Score=73.58  Aligned_cols=65  Identities=12%  Similarity=0.233  Sum_probs=54.5

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----Ccccccccccccceee
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRRIPRV  304 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~dim~~~~~~V  304 (513)
                      +++++++++++. ++++.|.+++++.+||.++  ++++|+++.+|++.....     .+.+++++|.+++.+|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            467899999999 9999999999999999975  799999999999753321     2467999998887764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.41  E-value=2.9e-08  Score=94.64  Aligned_cols=104  Identities=12%  Similarity=0.174  Sum_probs=52.9

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce-e
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP-R  303 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~-~  303 (513)
                      +.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...... ....+.+.+-.+ .
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l~~~~  145 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRFSVLL  145 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEEEEEe
Confidence            3469999997  788899999998 99999999999999999865 8999999999998753211 112222221111 1


Q ss_pred             eCCCCCHHHHHHHHHhCCceEEEEEecCCC
Q 010325          304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGK  333 (513)
Q Consensus       304 Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~  333 (513)
                      .....++.++.+.|.+++.+.++|++.+|.
T Consensus       146 ~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          146 EDKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             ------------------------------
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence            133445999999999999999999875443

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.35  E-value=3.1e-08  Score=109.72  Aligned_cols=128  Identities=14%  Similarity=0.038  Sum_probs=92.8

Q ss_pred             Cccccccccc--ccceeeCCCCCHHHHHHHHH-hCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCC------
Q 010325          289 TETPVSAVSI--RRIPRVPSDMPLYDILNEFQ-KGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT------  359 (513)
Q Consensus       289 ~~~~v~dim~--~~~~~Vpe~~~l~d~L~~m~-~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~------  359 (513)
                      .+.+++|+|.  +++.++++++++.|+++.|+ +++.+..||+|+.|..+|++  |.+|+++.+.....+....      
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiV--t~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAI--SRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEE--SHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEE--EHHHHHHHHHHHhhhcccccccccc
Confidence            3568999998  88999999999999999999 79999999999999999999  9999988765432111000      


Q ss_pred             ------------------------------------cccc-ccccccCCceEecCCCCCccccccccccccCCCCccccc
Q 010325          360 ------------------------------------APLL-SKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGL  402 (513)
Q Consensus       360 ------------------------------------~p~~-~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl  402 (513)
                                                          .|.. ..+.+..++++++.++++.+..+.+..+...      .+
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~------~l  602 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPS------MI  602 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCS------EE
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCC------EE
Confidence                                                0000 1122445567888888888877776654322      23


Q ss_pred             cccccccCCCccceecchHHHHHHHh
Q 010325          403 IYASEDIEDGEVIGIITLEDVFEELL  428 (513)
Q Consensus       403 ~~~~~~~e~g~liGIITleDv~eel~  428 (513)
                      ++.    |+|+++||||.+|+++++.
T Consensus       603 pVv----e~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          603 YVT----ERGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             EEE----ETTEEEEEEEGGGTEECCC
T ss_pred             EEE----ECCEEEEEEehhhHHHHHh
Confidence            333    6899999999999987654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.06  E-value=1.4e-06  Score=93.78  Aligned_cols=117  Identities=13%  Similarity=0.073  Sum_probs=77.1

Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCC
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~  371 (513)
                      .+.++|..+++++++++++.++++.|.+++...+||+|+.|.++|++  |.+|+....       +.+.+....+.-..+
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiV--t~rDL~~~~-------~~~~~v~diM~p~~~  160 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGII--TGRDVRFVT-------DLTKSVAAVMTPKER  160 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEE--EHHHHTTCC-------CTTSBGGGTSEEGGG
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEE--EHHHHhhcc-------cCCCcHHHHhcCCCC
Confidence            45667888999999999999999999999999999999999999999  888886221       112222222221235


Q ss_pred             ceEecCCCCCccccccccccccCCCCccccccc-cccccCCCccceecchHHHHHHH
Q 010325          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGIITLEDVFEEL  427 (513)
Q Consensus       372 ~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~-~~~~~e~g~liGIITleDv~eel  427 (513)
                      .++++.+.++.+..+.+.......      +++ .    ++|+++|+||.+|+++..
T Consensus       161 ~vtv~~~~~l~ea~~~m~~~~i~~------lpVVD----e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          161 LATVKEGATGAEVQEKMHKARVEK------ILVVN----DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             CCEEECC----CGGGTCC---CCC------EEEEC----TTSBCCEEECCC-----C
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCE------EEEEc----CCCCEEEeehHhHHHHhh
Confidence            688899999888887776543222      333 2    679999999999999864

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.03  E-value=2e-06  Score=83.13  Aligned_cols=59  Identities=14%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      ...+|+++|+| .+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++..
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~  241 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLIST  241 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC-----
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhch
Confidence            46789999997 6899999999998 99999999999999999865 899999999999865

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.02  E-value=2.9e-06  Score=77.25  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE  288 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~  288 (513)
                      ..+.+|+++|++  +++++++++++. ++++.|.++++.++||+++  ++++|+|+.+|++.+...
T Consensus       102 ~~~~~v~~im~~--~~~tv~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          102 GRKLTASAVMTQ--PVVTAAPEDSVG-SIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HTTCBHHHHCBC--CSCCBCTTSBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCC
T ss_pred             ccccchhhhccc--CcccCCcchhHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            456789999997  889999999999 9999999999999999984  799999999999986544

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=97.92  E-value=1.1e-05  Score=68.65  Aligned_cols=59  Identities=22%  Similarity=0.314  Sum_probs=52.4

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ...+++++|++  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++...
T Consensus        60 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           60 NKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLF  118 (122)
T ss_dssp             TCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHh
Confidence            34489999987  778899999998 99999999999999999865 8999999999998753

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.91  E-value=6.8e-06  Score=73.41  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=53.5

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  +++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++...
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l  133 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSV  133 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHH
Confidence            357899999997  788899999998 999999999999999998 3 8999999999999754

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=97.91  E-value=1.4e-05  Score=62.65  Aligned_cols=29  Identities=10%  Similarity=0.082  Sum_probs=27.7

Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++|.+++++.++++.|.+++...+||+|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d   30 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME   30 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            57899999999999999999999999998

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.84  E-value=1.4e-05  Score=71.83  Aligned_cols=62  Identities=13%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC---cEEEEEEhhhhhcc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK---NIIGLLLVKSLLTV  285 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d---~ivGiV~~kDLl~~  285 (513)
                      ...+.+++++|+++.+++++++++++. ++++.|.+++++++||++++ +   +++|+|+.+|++..
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~  141 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKI  141 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHH
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHH
Confidence            346778999999877888999999998 99999999999999999864 5   89999999999864

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.75  E-value=2.7e-05  Score=66.27  Aligned_cols=60  Identities=23%  Similarity=0.325  Sum_probs=53.8

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      .+.+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++...
T Consensus        61 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           61 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAK  120 (125)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             cccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            3467889999997  788899999998 9999999999999999986  8999999999998653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.75  E-value=2.9e-05  Score=67.29  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=53.3

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++...
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHH
Confidence            467899999997  788899999998 999999999999999998 4 8999999999998653

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.74  E-value=1.7e-05  Score=69.83  Aligned_cols=60  Identities=18%  Similarity=0.396  Sum_probs=52.6

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAA  141 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHH
Confidence            456789999997  677899999998 99999999999999999855 8999999999999753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.74  E-value=2.4e-05  Score=67.57  Aligned_cols=57  Identities=23%  Similarity=0.360  Sum_probs=51.7

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+++++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++..
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~  122 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRA  122 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHH
Confidence            5789999986  788899999998 99999999999999999865 799999999999865

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=97.73  E-value=3.6e-05  Score=68.17  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=36.5

Q ss_pred             ccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       291 ~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd   68 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICD   68 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEEC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEEC
Confidence            478899887  899999999999999999999999999999

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.72  E-value=3.7e-05  Score=66.82  Aligned_cols=55  Identities=9%  Similarity=0.100  Sum_probs=44.6

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCc
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dil  346 (513)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|+.|...|++  |.+|++
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl~   60 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFF--TKSDII   60 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHH
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEE--eHHHHH
Confidence            3578899888999999999999999999999999999999555555555  444443

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.72  E-value=6.5e-05  Score=68.51  Aligned_cols=57  Identities=11%  Similarity=0.072  Sum_probs=51.3

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      +.+++++| +  +++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++...
T Consensus       106 ~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~~l  162 (172)
T 3lhh_A          106 RLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMDAL  162 (172)
T ss_dssp             CCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             cccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHHHH
Confidence            67899999 3  778999999998 99999999999999999865 7999999999999753

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.72  E-value=5.3e-05  Score=69.71  Aligned_cols=60  Identities=12%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTS
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            467789999996  778899999998 99999999999999999865 7999999999998653

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.71  E-value=2.3e-05  Score=67.46  Aligned_cols=56  Identities=9%  Similarity=-0.006  Sum_probs=46.9

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccc
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL  348 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~  348 (513)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|+ |...|++  |.+|+++.
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Giv--t~~dl~~~   59 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMV--HLSRLLEG   59 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEE--EHHHHHTT
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEE--EHHHHHHH
Confidence            46789999999999999999999999999999999999996 6666666  55555543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.71  E-value=4e-05  Score=69.22  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~  287 (513)
                      ...+.+++++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++....
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3457889999996  788899999998 9999999999999999986  89999999999997654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.69  E-value=4e-05  Score=66.94  Aligned_cols=59  Identities=12%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|+|   ++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++...
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            356789999974   67899999998 99999999999999999865 8999999999999754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=97.69  E-value=5.8e-05  Score=66.64  Aligned_cols=56  Identities=16%  Similarity=0.207  Sum_probs=50.7

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+++++| +  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++..
T Consensus        87 ~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~~  142 (148)
T 3lv9_A           87 KIELEEIL-R--DIIYISENLTID-KALERIRKEKLQLAIVVDEY-GGTSGVVTIEDILEE  142 (148)
T ss_dssp             CCCGGGTC-B--CCEEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SSEEEEEEHHHHHHH
T ss_pred             CccHHHhc-C--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHH
Confidence            67899999 3  678899999998 99999999999999999865 799999999999864

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.68  E-value=5.5e-05  Score=67.38  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      +.+++++| +  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++...
T Consensus        85 ~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l  141 (153)
T 3oco_A           85 KAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEEL  141 (153)
T ss_dssp             TSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHH
T ss_pred             CCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHH
Confidence            67899999 4  788999999998 99999999999999999865 8999999999999753

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.67  E-value=7.8e-05  Score=65.14  Aligned_cols=56  Identities=20%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+++++|++  ++.+++++ ++. ++++.|.+++.+++||++++ ++++|+|+.+|++..
T Consensus        70 ~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dll~~  125 (141)
T 2rih_A           70 DGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCFE  125 (141)
T ss_dssp             TSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHSC
T ss_pred             CCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcCCeEEEEEcCC-CcEEEEEEHHHHHHH
Confidence            6789999986  78899999 998 99999999999999999854 899999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.66  E-value=2.9e-05  Score=67.02  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=53.2

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++...
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  129 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            356789999987  788899999998 9999999999999999986  7999999999998754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.66  E-value=4.3e-05  Score=68.69  Aligned_cols=40  Identities=13%  Similarity=0.052  Sum_probs=36.9

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd   43 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD   43 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            3578899888899999999999999999999999999999

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.66  E-value=4.6e-05  Score=65.82  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=50.4

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      .+.+++++|+|   ++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++..
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~~  123 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLEQ  123 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHH
Confidence            46789999974   67899999998 99999999999999999865 799999999999864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.65  E-value=3.4e-05  Score=70.04  Aligned_cols=61  Identities=23%  Similarity=0.395  Sum_probs=54.2

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ...+.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            4567889999996  678899999998 99999999999999999865 8999999999998653

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.62  E-value=4.3e-05  Score=68.31  Aligned_cols=59  Identities=24%  Similarity=0.348  Sum_probs=52.6

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      ...+.+++++|++   ++++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++..
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~  150 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLA  150 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHH
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHH
Confidence            3467889999996   77899999998 99999999999999999854 799999999999865

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.61  E-value=5.3e-06  Score=89.55  Aligned_cols=120  Identities=16%  Similarity=0.055  Sum_probs=58.1

Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEec---CCCcccCCCCCCCCCccccccCCCCCCCCccccccccc
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA---KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE---~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~  368 (513)
                      .+.++|.++++++++++++.++++.|.+++.+.+||+|+   .|..+|++  |.+|+.... +    ...+.|....+..
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiV--t~~Dl~~~~-~----~~~~~~v~~vm~~  181 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIV--TSRDIDFLA-E----KDHTTLLSEVMTP  181 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEE--CTTTTC---------------------C
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEE--EHHHHHhhh-h----ccCCCCHHHHhCC
Confidence            466788888999999999999999999999999999998   59999999  999987631 0    0111222222222


Q ss_pred             cCCceEecCCCCCccccccccccccCCCCccccccc-cccccCCCccceecchHHHHHHHh
Q 010325          369 KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGIITLEDVFEELL  428 (513)
Q Consensus       369 ~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~-~~~~~e~g~liGIITleDv~eel~  428 (513)
                      ......++.+.++.+..+.+.....      ..+++ .    ++|+++|+||.+|+++.+.
T Consensus       182 ~~~~~tv~~~~~l~ea~~~m~~~~~------~~lpVVd----~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          182 RIELVVAPAGVTLKEANEILQRSKK------GKLPIVN----DCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             CBCCCCEETTCCSTTTTTHHHHHTC------SCCCEES----SSSCCC----CCCCSSCCC
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCC------CcccEEC----CCCeEEEEEEHHHHHHHhh
Confidence            2256788888888877776654322      12233 2    5789999999999987654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.59  E-value=6.4e-05  Score=65.15  Aligned_cols=40  Identities=10%  Similarity=0.106  Sum_probs=36.9

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   46 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVID   46 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEEC
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEEC
Confidence            3578899888899999999999999999999999999999

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.56  E-value=9.3e-05  Score=65.26  Aligned_cols=57  Identities=16%  Similarity=0.266  Sum_probs=50.6

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      ..+.+++++|++  ++.++++++++. ++++.|.++++  +||++++ ++++|+|+.+|++..
T Consensus        84 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~--l~Vvd~~-g~~~Giit~~dil~~  140 (150)
T 3lqn_A           84 LEEMKVEQVMKQ--DIPVLKLEDSFA-KALEMTIDHPF--ICAVNED-GYFEGILTRRAILKL  140 (150)
T ss_dssp             GGGCBGGGTCBS--SCCEEETTCBHH-HHHHHHHHCSE--EEEECTT-CBEEEEEEHHHHHHH
T ss_pred             HhcCCHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCE--EEEECCC-CcEEEEEEHHHHHHH
Confidence            357789999996  788999999998 99999999887  9999855 899999999999865

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.56  E-value=9.4e-05  Score=63.85  Aligned_cols=57  Identities=12%  Similarity=0.195  Sum_probs=50.6

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      .+.+++++|+   ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++..
T Consensus        70 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~~  126 (130)
T 3i8n_A           70 GQKQLGAVMR---PIQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFEH  126 (130)
T ss_dssp             TTSBHHHHSE---ECCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHH
T ss_pred             CcCCHHHHhc---CCcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHHH
Confidence            3668999996   467899999998 99999999999999999865 899999999999864

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.56  E-value=6.3e-05  Score=64.69  Aligned_cols=58  Identities=9%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      .+.+++++|+|   ++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++...
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            56789999964   56899999998 99999999999999999865 7999999999998653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.55  E-value=7.8e-05  Score=66.23  Aligned_cols=57  Identities=16%  Similarity=0.050  Sum_probs=45.9

Q ss_pred             cccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccc
Q 010325          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL  348 (513)
Q Consensus       290 ~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~  348 (513)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|+.|..+|++  |.+|+++.
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Giv--t~~dl~~~   68 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI--SMTMMMDA   68 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEE--EHHHHHHH
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEe--eHHHHHHH
Confidence            3578898875  888999999999999999999999999999666666666  55554443

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.53  E-value=7.9e-05  Score=66.49  Aligned_cols=40  Identities=15%  Similarity=0.210  Sum_probs=37.4

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd   51 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE   51 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEES
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEe
Confidence            4678899988999999999999999999999999999998

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.53  E-value=4.1e-05  Score=82.42  Aligned_cols=101  Identities=12%  Similarity=0.168  Sum_probs=19.9

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccc--ccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRI  301 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~--~~~  301 (513)
                      .+.+|+++|+|..+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....... ...+.+.  ...
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l~v~  235 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRYLVG  235 (503)
T ss_dssp             -----------------------------------------------------------------CC-CCBCTTSCBCCE
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhccccccccc
Confidence            4568999999866699999999999 99999999999999999865 89999999999997643221 1122111  111


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..++. ....+.++.|.+.+.+.+ ++|
T Consensus       236 a~v~~-~~~~e~~~~l~e~gv~~l-~Vd  261 (503)
T 1me8_A          236 AGINT-RDFRERVPALVEAGADVL-CID  261 (503)
T ss_dssp             EEECS-SSHHHHHHHHHHHTCSEE-EEC
T ss_pred             cccCc-hhHHHHHHHHHhhhccce-EEe
Confidence            23455 666777888888888865 444

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.52  E-value=8.2e-05  Score=64.48  Aligned_cols=57  Identities=18%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      ...+++++|.   ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++..
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~  124 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEE  124 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHH
T ss_pred             chhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHH
Confidence            3457889994   567899999998 99999999999999999865 899999999999865

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.49  E-value=9.5e-05  Score=66.65  Aligned_cols=38  Identities=5%  Similarity=-0.074  Sum_probs=34.1

Q ss_pred             ccccccc--ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~--~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++++|+  .++.+|++++++.+|++.|.+++...+||+|
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd   55 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVT   55 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEEC
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEc
Confidence            4667775  5688999999999999999999999999999

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.49  E-value=7.2e-05  Score=66.89  Aligned_cols=49  Identities=18%  Similarity=0.149  Sum_probs=40.4

Q ss_pred             cccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       290 ~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|+.|.++|++
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGiv   63 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI   63 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEE
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEe
Confidence            3578888877  789999999999999999999999999999444444444

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.48  E-value=9.4e-05  Score=69.93  Aligned_cols=60  Identities=15%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+..|++...
T Consensus       113 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          113 EPHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALV  172 (205)
T ss_dssp             CTTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             CCcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            356789999986  788999999998 99999999999999999865 8999999999998653

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.48  E-value=8.5e-05  Score=66.49  Aligned_cols=55  Identities=9%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl  283 (513)
                      .+.+++++|+|   ++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhc
Confidence            46789999975   67899999998 99999999999999999865 7999999999986

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.47  E-value=0.00013  Score=63.48  Aligned_cols=39  Identities=10%  Similarity=0.384  Sum_probs=34.8

Q ss_pred             ccccc---cccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          291 TPVSA---VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       291 ~~v~d---im~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .++++   +|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         8 ~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   49 (144)
T 2nyc_A            8 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID   49 (144)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEc
Confidence            45666   6778889999999999999999999999999999

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.44  E-value=0.00014  Score=71.19  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=37.9

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ...++++|.+++++|.+++++.++.+.|.+++.+.+||||
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd   51 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD   51 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEES
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEe
Confidence            4678999999999999999999999999999999999999

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.43  E-value=0.00022  Score=76.85  Aligned_cols=112  Identities=18%  Similarity=0.165  Sum_probs=83.3

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~  302 (513)
                      -.+.+++++|++ .++++++++.++. ++++.|.+++...+||+|++ ++++|+|+.+|++...... ....+.+.+-.+
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~rl~V  247 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGRLLV  247 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSCBCC
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccceee
Confidence            356789999997 6888999999998 99999999999999999865 8999999999999754321 223333323222


Q ss_pred             --eeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325          303 --RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (513)
Q Consensus       303 --~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv  338 (513)
                        .+.......+.++.+.+.+.+.+.|-...|...|++
T Consensus       248 ~aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v~  285 (511)
T 3usb_A          248 GAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVI  285 (511)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHHH
T ss_pred             eeeeeeccchHHHHHHHHhhccceEEecccccchhhhh
Confidence              344455567778888899999887766555444443

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.40  E-value=0.00019  Score=65.80  Aligned_cols=56  Identities=9%  Similarity=0.089  Sum_probs=44.1

Q ss_pred             ccccccccc--ccceeeCCCCCHHHHHHHHHhCCceEEEEEecC-CCcccCCCCCCCCCcc
Q 010325          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPK  347 (513)
Q Consensus       290 ~~~v~dim~--~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~-G~~~Giv~~T~~dile  347 (513)
                      ..+++++|.  ++++++++++++.++++.|.+++...+||+|+. |.++|++  |.+|++.
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGiv--t~~Dl~~   93 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIG--RAKDLVA   93 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEE--EHHHHHH
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEE--EHHHHHH
Confidence            467899985  468899999999999999999999999999954 4555555  4444443

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.32  E-value=0.00018  Score=65.54  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++...
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd-~-g~~vGiit~~dll~~l  163 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTH-N-GRLLGIITKKDVLKHI  163 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCCCcEEEEEE-C-CEEEEEEEHHHHHHHH
Confidence            456789999986  788999999998 999999999999999998 3 8999999999998753

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.17  E-value=0.00028  Score=69.65  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=54.0

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~  287 (513)
                      ..+.+++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+..|++....
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC-
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHH
Confidence            357889999986  788999999998 99999999999999999865 89999999999997643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.02  E-value=0.00038  Score=69.15  Aligned_cols=60  Identities=15%  Similarity=0.280  Sum_probs=53.6

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  +++++++++++. ++++.|.+++..++||++++ ++++|+|+..|++...
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            357789999986  788899999998 99999999999999999865 8999999999998653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.88  E-value=0.00068  Score=72.65  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=17.1

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccc--ccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRI  301 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~--~~~  301 (513)
                      .+.+++++|+|+.++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|++....... ...+..-  +-.
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~p~-a~kd~~grl~v~  221 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKAKTYPL-ASKDEQGRLRVG  221 (490)
T ss_dssp             ----------------------------------------------------------------CTT-CCBCTTSCBCCE
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhhccCcc-hhhhccCcceee
Confidence            4568999999866799999999999 99999999999999999865 89999999999997542211 1111100  111


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..+-......+.++.+.+.+...+ ++|
T Consensus       222 aavG~~~~~~~~a~~l~~aG~d~I-~id  248 (490)
T 4avf_A          222 AAVGTGADTGERVAALVAAGVDVV-VVD  248 (490)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEE-EEE
T ss_pred             eeeccccchHHHHHHHhhcccceE-Eec
Confidence            124444445666677777777644 445

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=96.86  E-value=0.00071  Score=73.05  Aligned_cols=59  Identities=8%  Similarity=0.061  Sum_probs=48.5

Q ss_pred             cccccccccccceeeCCC-CCHHHHHHHHHhCCceEEEEEe-cCCCcccCCCCCCCCCccccc
Q 010325          290 ETPVSAVSIRRIPRVPSD-MPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNE  350 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~-~~l~d~L~~m~~~~~~~a~VVD-E~G~~~Giv~~T~~dile~i~  350 (513)
                      ..+|+++|.+++++|+++ +++.++++.|.+++.+.+||+| +.|.++|++  |.+|+++.+.
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiV--t~~Dll~~l~  443 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVV--GQETLITQIV  443 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEE--EHHHHHHHHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEE--EHHHHHHHHH
Confidence            367999999999999999 9999999999999999999999 666666666  5556555443

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=96.78  E-value=0.0009  Score=71.35  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=54.0

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      -.+.+++++|++  ++++++++++++ ++.+.|.+++...+||++++ ++++|+|+.+|++...
T Consensus       216 ~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          216 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHH
Confidence            367899999986  788999999998 99999999999999999865 8999999999998653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.60  E-value=0.0011  Score=70.84  Aligned_cols=101  Identities=16%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce-
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP-  302 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~-  302 (513)
                      .+.+++++|+++.+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++...... ...++...+-.+ 
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~~-~~~~D~~~~l~vg  229 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSVIEHP-NAARDEKGRLLVG  229 (494)
T ss_dssp             ----------------------------------------------------------CHHHHTCT-TCCBCTTSCBCCE
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhhhccc-cccccchhhhccc
Confidence            4568999999877899999999999 99999999999999999865 8999999999999754321 111121001011 


Q ss_pred             -eeCCCCCHHHHHHHHHhCCceEEEE
Q 010325          303 -RVPSDMPLYDILNEFQKGSSHMAAV  327 (513)
Q Consensus       303 -~Vpe~~~l~d~L~~m~~~~~~~a~V  327 (513)
                       -+.......+.+..+.+.+...+.+
T Consensus       230 a~ig~~~~~~~~a~~l~~aGvd~v~i  255 (494)
T 1vrd_A          230 AAVGTSPETMERVEKLVKAGVDVIVI  255 (494)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             cccCcCHhHHHHHHHHHHhCCCEEEE
Confidence             2344456677888888887776544

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.43  E-value=0.0017  Score=69.38  Aligned_cols=104  Identities=17%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccc----cccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSA----VSIR  299 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~d----im~~  299 (513)
                      .+.+++++|++  ++++++++.++. ++++.|.+++...+||++++ ++++|+++.+|++....... ...+    ++..
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~~~~-~~~~~~g~~~v~  222 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKKYKN-AVRDENGELLVA  222 (486)
T ss_dssp             ---------------------------------------------------------------CCTT-CCBCTTSCBCCE
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhhccc-cccccCCceeec
Confidence            45689999986  788999999999 99999999999999999865 78999999999997643211 1111    1111


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEec-CCCcccC
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTL  337 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE-~G~~~Gi  337 (513)
                      .  .++. .+ .+.+..+.+.+.... |+|. .|...+.
T Consensus       223 ~--~~~~-~~-~~~a~~l~~~gvd~l-vvdta~G~~~~~  256 (486)
T 2cu0_A          223 A--AVSP-FD-IKRAIELDKAGVDVI-VVDTAHAHNLKA  256 (486)
T ss_dssp             E--EECT-TC-HHHHHHHHHTTCSEE-EEECSCCCCHHH
T ss_pred             c--eech-hh-HHHHHHHHHhcCCce-EEEecCCcEeeh
Confidence            1  2333 23 556777888888765 5663 4444443

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.32  E-value=0.0016  Score=69.51  Aligned_cols=99  Identities=14%  Similarity=0.166  Sum_probs=16.1

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc-cc---cccccc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-PV---SAVSIR  299 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~-~v---~dim~~  299 (513)
                      .+..|+++||+  ++++++.+.+++ |+.+++.+++...+||++++ ++++|+|+.+|+++....... .+   ..+...
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~Vg  273 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKNQNYPYASKVPESKQLYCG  273 (556)
T ss_dssp             ----------------------------------------------------------------CTTCCBCTTTCCBCCE
T ss_pred             cceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhhhhCCcchhcchhhceeeE
Confidence            35689999997  799999999999 99999999999999999876 899999999999875321110 00   111111


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      -.  |--...-.+-+..+.+.+..++ |+|
T Consensus       274 AA--Vgv~~d~~eR~~aLv~AGvD~i-viD  300 (556)
T 4af0_A          274 AA--IGTRPGDKDRLKLLAEAGLDVV-VLD  300 (556)
T ss_dssp             EE--ECSSHHHHHHHHHHHHTTCCEE-EEC
T ss_pred             EE--eccCccHHHHHHHHHhcCCcEE-EEe
Confidence            12  2222234555666777787765 556

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.91  E-value=0.018  Score=61.29  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=69.8

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccccc--c
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR--I  301 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~--~  301 (513)
                      .+.+++++|++ .++++++.++++. ++++.|.+++..++||++++ ++++|+++.+|++....... ...+...+-  .
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~~~~~-~~~d~~~~~~vg  225 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIEFPH-AAKDEFGRLLVA  225 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-CCBCTTSCBCCE
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHHhccc-cccCcCCcEEEE
Confidence            57789999985 2677899999998 99999999999999999865 89999999999997543211 111111011  1


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..+.......+.++.+.+.+...+ +++
T Consensus       226 ~~i~~~~~~~~~a~~l~~~G~d~i-vi~  252 (491)
T 1zfj_A          226 AAVGVTSDTFERAEALFEAGADAI-VID  252 (491)
T ss_dssp             EEECSSTTHHHHHHHHHHHTCSEE-EEC
T ss_pred             EeccCchhHHHHHHHHHHcCCCeE-EEe
Confidence            124443444555666666676665 455

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=90.85  E-value=0.053  Score=43.22  Aligned_cols=47  Identities=23%  Similarity=0.190  Sum_probs=40.3

Q ss_pred             cccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~  411 (513)
                      +.+..++.|.+++.++++++++.+...++.+ +.|++||+. ...+++.
T Consensus         3 i~~~~dg~~~v~g~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~   51 (81)
T 3lae_A            3 AIQQSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPD   51 (81)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred             cEEeCCCEEEEEeeCCHHHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Confidence            4556788999999999999999999999876 899999998 6667664

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0

Probab=90.70  E-value=0.048  Score=43.67  Aligned_cols=47  Identities=15%  Similarity=0.049  Sum_probs=40.2

Q ss_pred             cccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~  411 (513)
                      +.+..++.|.+++.++++++++.+...++.+ +.|++||++ ...++|.
T Consensus         3 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~   51 (83)
T 3llb_A            3 IKPLPSGDFIVKALTPVDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPK   51 (83)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHCCCCCTTTCSBHHHHHHHHHSSCCC
T ss_pred             eEEeCCCEEEEEccCCHHHHHHHhCCCCCCCCCcCHHHHHHHHhCcCCC
Confidence            3456788999999999999999999999876 899999998 6677764

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4

Probab=90.64  E-value=0.04  Score=44.52  Aligned_cols=48  Identities=13%  Similarity=0.045  Sum_probs=40.5

Q ss_pred             ccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cc
Q 010325          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       366 ~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      .+..++.|.+++.+++++++..++..++.+ +.|++||++ .+.++|. |+
T Consensus         3 ~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~dTl~G~v~~~lg~iP~~Gd   53 (87)
T 2rk5_A            3 REIADNTYIVLGTMTLNDFNEYFETDLESDNVDTIAGFYLTGVGTIPSQEE   53 (87)
T ss_dssp             EEEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCCSSS
T ss_pred             EEeCCCEEEEEccCCHHHHHHHhCCCCCCCCcccHHHHHHHHhCcCCCCCC
Confidence            445678899999999999999999999875 999999998 6777764 44

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=89.56  E-value=0.06  Score=43.88  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=42.3

Q ss_pred             ccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cc
Q 010325          364 SKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       364 ~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      .+.+...+.|.|++.+++.++++.+...++.. +.|++||++ ...++|. |+
T Consensus        11 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~dTlgG~i~~~lg~iP~~Ge   63 (91)
T 2pli_A           11 NIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGE   63 (91)
T ss_dssp             SEEEEETTEEEEETTCBHHHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCCTTC
T ss_pred             ceEEeCCCEEEEEcCCCHHHHHHHhCCCCCCCCCccHHHHHHHHhCCCCCCCC
Confidence            35566788999999999999999999999865 999999998 6777765 44

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*

Probab=89.39  E-value=0.065  Score=43.97  Aligned_cols=50  Identities=16%  Similarity=0.074  Sum_probs=38.8

Q ss_pred             ccccccCCceEecCCCCCccccccccccccC---C-CCccccccc-cccccCC-Cc
Q 010325          364 SKQDEKTESVVVDVDRPLSSGSMNRLSSSQR---S-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       364 ~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~---~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      .+.+...+.|.|++.++++++++.+...++.   . +.|++||++ ...++|. |+
T Consensus        11 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~dTlgG~i~~~lg~iP~~Gd   66 (94)
T 2oai_A           11 LMVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHVGE   66 (94)
T ss_dssp             SEEECTTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHHHHHHHSSCCCTTC
T ss_pred             CeEEeCCCeEEEeccCCHHHHHHHhCCCCCcccCCCCccHHHHHHHHhCCCCCCCC
Confidence            3556778899999999999999999999986   4 999999998 6777765 44

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4

Probab=89.31  E-value=0.062  Score=43.92  Aligned_cols=47  Identities=15%  Similarity=0.011  Sum_probs=40.8

Q ss_pred             cccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~  411 (513)
                      +.+..++.|.|++.+++.++++.++..++.. +.|++||++ .+.+++.
T Consensus        10 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~TlgG~i~~~lg~iP~   58 (93)
T 2r2z_A           10 YTQVADNEYLVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPD   58 (93)
T ss_dssp             EEEEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHSSCCC
T ss_pred             eEEeCCCEEEEECCCCHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCCC
Confidence            5556788999999999999999999999875 999999998 6777764

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=88.64  E-value=0.087  Score=42.78  Aligned_cols=49  Identities=16%  Similarity=0.058  Sum_probs=41.7

Q ss_pred             cccccCCceEecCCCCCccccccccccccC--C-CCccccccc-cccccCC-Cc
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQR--S-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~--~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      +.+..++.|.+++.++++++++.++..++.  . +.|++||++ .+.+++. |+
T Consensus         9 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~TlgG~i~~~lg~iP~~Gd   62 (90)
T 2p13_A            9 AEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGE   62 (90)
T ss_dssp             EEECTTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHHHHHHHSSCCCTTC
T ss_pred             eEEeCCCEEEEECcCCHHHHHHHHCCCCCCcCCCCccHHHHHHHHhCCCCCCCC
Confidence            455678899999999999999999999986  4 999999999 6777765 54

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4

Probab=88.20  E-value=0.095  Score=42.15  Aligned_cols=48  Identities=13%  Similarity=0.040  Sum_probs=40.2

Q ss_pred             ccccCCceEecCCCCCcccccccccc-ccC---C-CCccccccc-cccccCC-Cc
Q 010325          366 QDEKTESVVVDVDRPLSSGSMNRLSS-SQR---S-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       366 ~~~~~~~~~vd~~~~i~~~~~~~~~~-l~~---~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      .+...+.|.+++.+++.++++.++.. ++.   + +.|++||++ ...++|. |+
T Consensus         4 ~~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~Gd   58 (86)
T 2pls_A            4 VQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGD   58 (86)
T ss_dssp             EECTTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCCTTC
T ss_pred             EEeCCCeEEEEcccCHHHHHHHhCCCcCCCccCCCcccHHHHHHHHhCCCCCCCC
Confidence            44567889999999999999999998 886   4 899999998 6777764 44

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4

Probab=87.30  E-value=0.13  Score=41.40  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=39.9

Q ss_pred             ccccCCceEecCCCCCcccccccccc-ccC-C-CCccccccc-cccccCC-Cc
Q 010325          366 QDEKTESVVVDVDRPLSSGSMNRLSS-SQR-S-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       366 ~~~~~~~~~vd~~~~i~~~~~~~~~~-l~~-~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      .+..++.|.+++.++++++++.++.. ++. + +.|++||++ ...++|. |+
T Consensus         4 ~~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd   56 (86)
T 2p4p_A            4 MRRNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRXIPXXTD   56 (86)
T ss_dssp             CCCCCSEEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCTTC
T ss_pred             EEeCCCEEEEEccCCHHHHHHHhCCCCCCcCCCCccHHHHHHHHhCCCCCCCc
Confidence            34567889999999999999999996 885 4 999999998 6777765 44

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4

Probab=87.07  E-value=0.1  Score=43.56  Aligned_cols=49  Identities=16%  Similarity=0.262  Sum_probs=41.3

Q ss_pred             cccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cc
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      +.+..++.|.+++.++++++++.++..++.+ +.|++||+. ...+++. |+
T Consensus         6 i~~~~dg~~~v~G~~~l~dl~~~lg~~l~~e~~dTlgGli~~~lg~iP~~Gd   57 (101)
T 2p3h_A            6 ITETSPDKWLIDGDTPLDEVERAIGYELPEGDYETISGLLFDHANALLKTGD   57 (101)
T ss_dssp             EEEEETTEEEEETTCBHHHHHHHHTSCCCCSSCCBHHHHHHHHHCSCCCTTC
T ss_pred             eEEeCCCEEEEEccCCHHHHHHHhCCCCCCCCCccHHHHHHHHhCCCCCCCC
Confidence            4456788999999999999999999999875 999999998 6777764 54

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=86.80  E-value=0.12  Score=42.16  Aligned_cols=49  Identities=22%  Similarity=0.191  Sum_probs=37.4

Q ss_pred             cccccCCceEecCCCCCcccccccccc-cc-CC-CCccccccc-cccccCC-Cc
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSS-SQ-RS-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~-l~-~~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      +.+...+.|.|++.+++.++++.++.. ++ .. +.|++||++ ...+++. |+
T Consensus        11 i~~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd   64 (92)
T 2o3g_A           11 VQGNPDESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGD   64 (92)
T ss_dssp             ------CCSEEETTCBHHHHTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCCTTC
T ss_pred             eEEcCCCEEEEEccCCHHHHHHHhCCCCCCcCCCcccHHHHHHHHhCCCCCCCC
Confidence            455678899999999999999999998 88 44 999999998 6777764 44

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=85.36  E-value=0.18  Score=42.92  Aligned_cols=48  Identities=13%  Similarity=-0.060  Sum_probs=40.9

Q ss_pred             ccccccCCceEecCCCCCcccccccccc--ccC----CCCccccccc-cccccCC
Q 010325          364 SKQDEKTESVVVDVDRPLSSGSMNRLSS--SQR----SDSTTNGLIY-ASEDIED  411 (513)
Q Consensus       364 ~~~~~~~~~~~vd~~~~i~~~~~~~~~~--l~~----~~~t~~gl~~-~~~~~e~  411 (513)
                      .+.+...+.|.|++.+++.++++.+...  ++.    ++.|++||++ .+.++|.
T Consensus        28 ~i~~~~dg~~~v~G~~~l~dl~e~lg~~~~l~~~~~~~~dTlgGlil~~lg~iP~   82 (113)
T 3ded_A           28 EIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPS   82 (113)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCC
T ss_pred             ceEEecCCEEEEecccCHHHHHHHhCCCccCCcccCCCCccHHHHHHHHhCCCCC
Confidence            4566778899999999999999999998  885    3899999998 6677775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	513
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	2e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	8e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	5e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.003
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.003

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 11/125 (8%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL 282
           +      + +         D + ++  +A   ++  G    P++    ++ +G+L +   
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 283 LTV-------------------RPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
           + +                              S + +  +  +  L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 324 MAAVV 328
              V+
Sbjct: 129 RLPVI 133

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEA 351
           PV      ++  +  ++ L   +    +       V+    K   +  + +  K      
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIK------ 56

Query: 352 KGGDCDLTAPLLSKQDEKTESVVVDV-DRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIE 410
                   A      D     VV DV    L +       +   ++     +       +
Sbjct: 57  ----QLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK 112

Query: 411 DGEVIGIITLEDVFEELLQEEIVDETDE 438
           D  + GIIT  D+   L    ++++  E
Sbjct: 113 DNTIRGIITERDLLIALHHILVMEKFKE 140

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 13/153 (8%), Positives = 35/153 (22%), Gaps = 25/153 (16%)

Query: 208 ELTHDETTIISGALD-LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVY 266
           ++   +   +      +  +T+ + +         DV       ++  +        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLF-VKTSLSLLTLNNIVSAPLW 59

Query: 267 SGNPKNIIGLLLVKSLLTV-----------------------RPETETPVSAVSIRRIPR 303
                   GLL +   + V                                         
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336
           V     L D      K  +    ++   G++ +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGS 152

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 410 EDGEVIGIITLEDVFEELLQEEIVDETDEY 439
           + G V+GI+TL D+   L +  I D    +
Sbjct: 108 DPGRVVGIVTLTDLSRYLSRASITDILLSH 137

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 13/143 (9%)

Query: 290 ETPVSAVSI---RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-SKTLPPMTDGKK 345
           + P+  ++I     +       P+ D++    +G      ++   G              
Sbjct: 5   KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 64

Query: 346 PKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYA 405
            K          +   L+ + D+         +  LS+   N   +        +     
Sbjct: 65  IKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD----- 119

Query: 406 SEDIEDGEVIGIITLEDVFEELL 428
               + G ++G++TL D+ + +L
Sbjct: 120 ----DVGRLVGVLTLSDILKYIL 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 1/138 (0%)

Query: 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAK 352
           V  +   +   V  D P+ +I++   +        V    K   + P+            
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMH-LLKVSGFHF 64

Query: 353 GGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDG 412
            G       + S           ++        M+            N +       E G
Sbjct: 65  FGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG 124

Query: 413 EVIGIITLEDVFEELLQE 430
           E++G +   ++   L + 
Sbjct: 125 EIVGDLNSLEILLALWKG 142

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDC 356
           +   I  V +  P+Y  L  F +       VV  KG+   +    D       +      
Sbjct: 18  TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLD 77

Query: 357 DLTAPLLSKQDEKTESVV-VDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVI 415
                 L  +    E V+   +   L +     + +        +         E   V 
Sbjct: 78  VSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD---------EHDVVK 128

Query: 416 GIITLEDVFEELLQE 430
           GI++L D+ + L+  
Sbjct: 129 GIVSLSDILQALVLT 143

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 15/154 (9%)

Query: 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-------SKTLPPMTD 342
              +     R +  V    PL   L      +S    VV ++G        +  L     
Sbjct: 3   GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62

Query: 343 GKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSS-GSMNRLSSSQRSDSTTNG 401
            +  K  E      +             +  +   ++P++   + + + ++         
Sbjct: 63  VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122

Query: 402 LIYASEDI-------EDGEVIGIITLEDVFEELL 428
           L  A   I        +G++IG+I   D+ + L+
Sbjct: 123 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.77
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.72
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.72
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.71
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.71
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.7
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.7
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.68
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.68
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.68
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.68
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.68
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.66
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.65
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.65
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.65
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.65
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.61
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.59
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.59
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.58
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.58
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.56
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.54
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.49
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.13
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.11
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.0
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.0
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.98
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	97.97
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	97.88
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.87
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	97.87
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.85
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	97.84
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	97.82
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.8
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	97.77
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.66
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.63
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	97.63
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.62
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.59
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.59
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.56
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.41
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.33
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.24
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.15
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	96.83
d2o1ra1	78	Hypothetical protein HI0107 {Haemophilus influenza	93.92
d2rk5a1	84	Putative hemolysin SMU1693 {Streptococcus mutans [	92.57
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	92.2
d2p13a1	85	Uncharacterized protein NE2227 {Nitrosomonas europ	91.77
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	91.56
d2p3ha1	98	Uncharacterized protein Cgl1194/Cg1349 {Corynebact	91.18
d3deda1	87	Probable hemolysin CV0231 {Chromobacterium violace	89.87
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	89.42
d2p4pa1	82	Hypothetical protein HD1797 {Haemophilus ducreyi [	88.05
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	87.79
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	86.13
d2o3ga1	76	Putative protein NMB1485 {Neisseria meningitidis [	85.69
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	83.98

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=2.2e-19  Score=157.40  Aligned_cols=101  Identities=18%  Similarity=0.270  Sum_probs=89.5

Q ss_pred             ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------Ccccccc
Q 010325          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSA  295 (513)
Q Consensus       225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------~~~~v~d  295 (513)
                      |.+|+++|+|.+++++++.+++++ ++++.|.+++++++||++++ ++++|+++.+|++.....         ...++++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            568999999999999999999999 99999999999999999866 899999999999864321         2357888


Q ss_pred             cccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       296 im~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +|.++++++++++++.+++..|.+++  .+||+|
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd  110 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN  110 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC
T ss_pred             cccccccccccchhHHHHHHHHHhCC--EEEEEc
Confidence            88899999999999999999998764  589999

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.72  E-value=1.8e-18  Score=158.78  Aligned_cols=122  Identities=11%  Similarity=0.146  Sum_probs=104.6

Q ss_pred             ChhHHHHHHHhhcC-cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-
Q 010325          210 THDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-  287 (513)
Q Consensus       210 ~~~E~~~I~~vl~l-~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-  287 (513)
                      ++.|+..++.+.+| .+.+++|+|++..++++++.+.++. +|++.|.+++++++||++++.++++|+++.+|++.... 
T Consensus         3 ~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1           3 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            46788889999986 9999999999989999999999999 99999999999999999976689999999999975310 


Q ss_pred             -----C---C--------------cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCC
Q 010325          288 -----E---T--------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (513)
Q Consensus       288 -----~---~--------------~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G  332 (513)
                           .   .              .......|.+++++|++++++.+++..|.+++.|.+||+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g  148 (179)
T d2ooxe1          82 YYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG  148 (179)
T ss_dssp             HHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECT
T ss_pred             ccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCC
Confidence                 0   0              0123345678889999999999999999999999999999655

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=1.4e-17  Score=143.66  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=90.2

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeC
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vp  305 (513)
                      ++|+++|++  ++.++++++++. +++++|.+++++.+||++++ ++++|+++.+|++...  .+.++.++|.+++++++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~--~~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLD--LDSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSC--TTSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhh--ccccccccccCccEEEC
Confidence            468999996  889999999999 99999999999999999765 8999999999999763  35688999999999999


Q ss_pred             CCCCHHHHHHHHHhCCceEEEEEe
Q 010325          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       306 e~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++.++++.|.+++.+.+||||
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVD   98 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCCHHHHHHHHHhcCceeeeeEC
Confidence            999999999999999999999999

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=3.5e-18  Score=147.85  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=71.8

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeC
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vp  305 (513)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...  .+..+.++|.+++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~--~~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNP--DEEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhh--cccchhhccccceeecc
Confidence            468999997  889999999999 99999999999999999865 8999999999998753  34678888889999999


Q ss_pred             CCCCHHHHHHHHHhCCceEEEEEe
Q 010325          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       306 e~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++.++++.|.+++.+.+||||
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVD   98 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEe
Confidence            999999999999999999999999

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.71  E-value=8.7e-18  Score=146.17  Aligned_cols=102  Identities=17%  Similarity=0.253  Sum_probs=92.3

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIR  299 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~~~~~v~dim~~  299 (513)
                      |++.+|+++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+++.+|++....   ....++.++|.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999996  899999999999 9999999999999999975  68999999999986432   234678899889


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++|++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  105 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEe
Confidence            999999999999999999999999999999

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.70  E-value=1.2e-17  Score=145.68  Aligned_cols=97  Identities=18%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcC-----CceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI  301 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~-----~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~  301 (513)
                      ||+.+|++  +++++++++++. ++++.|++++     .+.+||++++ ++++|++..++++...  .+.++.++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~--~~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND--DDTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC--TTSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeecccccc--ccEEhhhhccCCC
Confidence            78999996  999999999999 9999998874     6789999865 8999999999998763  3578999999999


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++++.++++.|.+++.+.+||||
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD  103 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTD  103 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEe
Confidence            9999999999999999999999999999

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=1.8e-18  Score=152.60  Aligned_cols=100  Identities=15%  Similarity=0.225  Sum_probs=89.4

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----------Ccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------TETPVSA  295 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----------~~~~v~d  295 (513)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....          ...++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            368999998  799999999998 99999999999999999865 789999999998753211          2367899


Q ss_pred             cccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       296 im~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +|.++++++.+++++.++++.|.+++.+.+||+|
T Consensus        78 im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd  111 (141)
T d3ddja1          78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN  111 (141)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhCcccccccccchhhHHHHHHHHcCCCEEEEEc
Confidence            9989999999999999999999999999999999

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1.2e-17  Score=144.53  Aligned_cols=100  Identities=13%  Similarity=0.227  Sum_probs=88.4

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----Cccccccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRR  300 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~dim~~~  300 (513)
                      .||+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....     ....++++|..+
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            479999996  899999999999 99999999999999999865 799999999998753211     234677888888


Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~v~~~~~~~~~~~~m~~~~~~~lpVvd  105 (123)
T d1y5ha3          77 IYYVDANASIQEMLNVMEEHQVRRVPVIS  105 (123)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             ceeeeecchHHHHHHHHHHcCceEEEEEE
Confidence            99999999999999999999999999998

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.8e-17  Score=147.64  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=88.4

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcC-----CceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI  301 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~-----~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~  301 (513)
                      +|++||++  +++++++++++. ++++.|++++     .+.+||++++ ++++|+++.+|+....  ...++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~--~~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSC--TTCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhcc--cccchHHhcccCC
Confidence            68999997  999999999999 9999998875     5788999865 8999999999998753  3568899999999


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++++++.++++.|.+++.+.+||||
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd  103 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVD  103 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEEC
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEe
Confidence            9999999999999999999999999999

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.68  E-value=3.6e-17  Score=144.40  Aligned_cols=100  Identities=24%  Similarity=0.272  Sum_probs=89.7

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC------------CCcccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------------ETETPV  293 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~------------~~~~~v  293 (513)
                      ++|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....            ....++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            479999997  889999999998 99999999999999999866 89999999999975321            123578


Q ss_pred             cccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          294 SAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       294 ~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  113 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  113 (139)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             hHhhccccccccccchHHHHHHHHHHcCceEEEEEE
Confidence            999999999999999999999999999999999998

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=3.6e-17  Score=146.63  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=91.2

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---------------
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---------------  287 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---------------  287 (513)
                      |++.+++++|++  +++++.+++++. +|++.|++++++++||++++ ++++|+++.+|++....               
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            468899999986  899999999999 99999999999999999865 89999999999974210               


Q ss_pred             -------------------CCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          288 -------------------ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       288 -------------------~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                                         ....++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd  137 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR  137 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe
Confidence                               012468889889999999999999999999999999999999

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.5e-17  Score=149.57  Aligned_cols=106  Identities=10%  Similarity=0.285  Sum_probs=91.9

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-------------
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-------------  289 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-------------  289 (513)
                      |.+++++|+|++..++++++.+.++. +|++.|.+++++++||++++.++++|+++.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            45779999999999999999999999 9999999999999999987768999999999997532110             


Q ss_pred             ------cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ------~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                            .....++|.++++++++++++.++++.|.+++.|.+||+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd  134 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID  134 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEE
Confidence                  0123456778889999999999999999999999999998

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.68  E-value=2.8e-17  Score=142.99  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=89.5

Q ss_pred             cccccccccC-ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----Ccccccccccc
Q 010325          226 KTAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIR  299 (513)
Q Consensus       226 ~~V~dIMtPr-~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~dim~~  299 (513)
                      +||+|||+.+ .+++++++++++. +++++|.+++++++||+++  ++++|+++.+|++.....     ...+++++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            4799999864 4799999999999 9999999999999999975  799999999999753211     23678999999


Q ss_pred             cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.++.+++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  108 (127)
T d2rc3a1          79 QVAYVDLNNTNEDCMALITEMRVRHLPVLD  108 (127)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eeEEeccCccHHHHHHHHHHCCCcEEEEEE
Confidence            999999999999999999999999999998

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.66  E-value=3e-17  Score=145.65  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=90.2

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCccccccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRR  300 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-----~~~~~v~dim~~~  300 (513)
                      ++|+|+|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....     ....+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            479999997  899999999999 99999999999999999865 89999999999975421     1235789999999


Q ss_pred             ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.+++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  107 (142)
T d1pvma4          79 IPKVKSDYDVKDVAAYLSENGLERCAVVD  107 (142)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cccccchhhHHHHHHHHHHcCCcEEEEEe
Confidence            99999999999999999999999999999

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.65  E-value=1.7e-16  Score=141.95  Aligned_cols=104  Identities=9%  Similarity=-0.016  Sum_probs=88.3

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEhhhhhccCCC-------------
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLTVRPE-------------  288 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~-~d~ivGiV~~kDLl~~~~~-------------  288 (513)
                      -.+++|+|||++  +++++++++++. ++++.|.+++++.+||++++ .+.++|+++..|++.....             
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~   84 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM   84 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc
Confidence            347799999996  999999999999 99999999999999999853 3679999999999752210             


Q ss_pred             ----------------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          289 ----------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       289 ----------------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                                      ....+.++|.+++++|.+++++.++++.|.+++.+.+||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d  141 (160)
T d2d4za3          85 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS  141 (160)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE
Confidence                            01235567788899999999999999999999999999987

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=7.7e-17  Score=138.78  Aligned_cols=98  Identities=13%  Similarity=0.184  Sum_probs=87.4

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CCcccccccccccce
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSIRRIP  302 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~----~~~~~v~dim~~~~~  302 (513)
                      +|+|+|++  ++++++.++|+. |+++.|.+++++.+||.++  ++++|+++.+|++....    ..+.++.++|.++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            47899996  899999999999 9999999999999999975  79999999999986421    224678999999999


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +|++++++.++++.|++++.+.+||+|
T Consensus        76 ~v~~~~~l~~a~~~m~~~~~~~l~V~~  102 (120)
T d1pbja3          76 TISPRATIKEAAEKMVKNVVWRLLVEE  102 (120)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccchhHHHHHHHHHHHcCCeEEEEEE
Confidence            999999999999999999999999876

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.65  E-value=3.2e-16  Score=135.99  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~-~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~  315 (513)
                      +++++++++++. ++++.|.+++++++||+++. .++++|+|+.+|+......+......++.++++++++++++.++++
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   84 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAER   84 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHHHH
Confidence            678899999999 99999999999999999852 4789999999999876544333344445667889999999999999


Q ss_pred             HHHhCCceEEEEEe
Q 010325          316 EFQKGSSHMAAVVK  329 (513)
Q Consensus       316 ~m~~~~~~~a~VVD  329 (513)
                      .|.+++.+.+||||
T Consensus        85 ~m~~~~~~~lpVVd   98 (126)
T d1zfja4          85 ILHEHRIEKLPLVD   98 (126)
T ss_dssp             HHHHTTCSEEEEEC
T ss_pred             HHHhcCCcEEEEEc
Confidence            99999999999999

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=3.2e-16  Score=137.04  Aligned_cols=100  Identities=13%  Similarity=0.220  Sum_probs=89.2

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Ccccccccccccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~  301 (513)
                      .+|+++|+.  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....    ...+++++|.+++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            479999985  899999999999 99999999999999999875 799999999999864322    2467999999999


Q ss_pred             eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++.+++++.++++.|.+++.+.+||++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~  108 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE  108 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE
Confidence            9999999999999999999999888765

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=5.1e-16  Score=135.72  Aligned_cols=98  Identities=22%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------Ccc
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TET  291 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------~~~  291 (513)
                      ++|+++|++  ++.++++++++. +|++.|.++|++++||++   ++++|+++.+|++.....              ...
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            469999997  788899999999 999999999999999986   379999999999864321              135


Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        75 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd  112 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD  112 (135)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC
T ss_pred             CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe
Confidence            78999999999999999999999999999999999999

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.59  E-value=7.5e-16  Score=134.02  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=85.5

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEhhhhhccCCCC--cccccccccccce
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIP  302 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~-~~d~ivGiV~~kDLl~~~~~~--~~~v~dim~~~~~  302 (513)
                      ++|+|+|++  +++++++++++. ++++.|.+++++++||++. +.++++|+++.+|++......  .......+.++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            479999986  889999999999 9999999999999999963 347899999999998753221  2223344578888


Q ss_pred             eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++.+++++.++++.|.+++.+.+||+|
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd  104 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVN  104 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEc
Confidence            999999999999999999999999999

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.59  E-value=1.1e-15  Score=136.73  Aligned_cols=101  Identities=10%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             cccccccc-CccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----Ccccccccc---
Q 010325          227 TAEEAMTP-IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVS---  297 (513)
Q Consensus       227 ~V~dIMtP-r~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~dim---  297 (513)
                      .++++|.+ +++++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....     ...++.++|   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            46778875 67999999999999 99999999999999999865 799999999999864322     123444443   


Q ss_pred             ---cccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          298 ---IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       298 ---~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                         ..++.++++++++.++++.|.+++.+.+||||
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  114 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD  114 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc
Confidence               35667899999999999999999999999999

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-15  Score=137.77  Aligned_cols=104  Identities=14%  Similarity=0.161  Sum_probs=85.5

Q ss_pred             ccccccccccCccE----EEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEhhhhhccCC------------
Q 010325          225 EKTAEEAMTPIEST----FSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRP------------  287 (513)
Q Consensus       225 ~~~V~dIMtPr~~v----v~v~~d~sl~~eal~~i~~~~~sr~PV~~~-~~d~ivGiV~~kDLl~~~~------------  287 (513)
                      ...|+|||.|+...    +.+..+.++. ++.+.+.+++++++||+.+ +.++++|+++.+||+....            
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~   80 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST   80 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccc
Confidence            35789999996533    5567788998 9999999999999999953 3468999999999984210            


Q ss_pred             ----------------CCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          288 ----------------ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       288 ----------------~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                                      ....+++++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d  138 (169)
T d2j9la1          81 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  138 (169)
T ss_dssp             CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence                            012357888888999999999999999999999999999876

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.6e-15  Score=132.85  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             cccccccccc-CccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----cc------c
Q 010325          225 EKTAEEAMTP-IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ET------P  292 (513)
Q Consensus       225 ~~~V~dIMtP-r~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----~~------~  292 (513)
                      ..++++++.+ .++++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++......     ..      .
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~   85 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ   85 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGG
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhccc
Confidence            4567777654 35789999999999 99999999999999999864 7899999999998654321     11      2


Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ....|..+++++.+++++.++++.|.+++.+.+||+|
T Consensus        86 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  122 (145)
T d2v8qe1          86 HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  122 (145)
T ss_dssp             GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc
Confidence            2333567788999999999999999999999999999

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=2.3e-15  Score=132.62  Aligned_cols=103  Identities=13%  Similarity=0.142  Sum_probs=79.9

Q ss_pred             ccccccc-cccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----ccc------
Q 010325          225 EKTAEEA-MTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETP------  292 (513)
Q Consensus       225 ~~~V~dI-MtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----~~~------  292 (513)
                      .++++|+ +.+..++++++.++++. +|++.|.+++++++||++++ ++++|+++.+|++......     ...      
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~   82 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   82 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhhh
Confidence            4566665 33456899999999999 99999999999999999865 7899999999998643211     111      


Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ....+..++++|++++++.++++.|.+++.+.+||||
T Consensus        83 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd  119 (140)
T d2nyca1          83 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  119 (140)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe
Confidence            1223356778999999999999999999999999999

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=6.4e-15  Score=130.01  Aligned_cols=99  Identities=18%  Similarity=0.249  Sum_probs=82.9

Q ss_pred             cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC------------------
Q 010325          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------------------  287 (513)
Q Consensus       226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~------------------  287 (513)
                      ..+.++|+.  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....                  
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            357788885  889999999999 99999999999999999865 79999999999975310                  


Q ss_pred             -CCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          288 -ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       288 -~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                       -...+++++ +++++++.+++++.++++.|.+++.+.+||||
T Consensus        80 ~~~~~~~~~~-~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd  121 (145)
T d1o50a3          80 RLIAKNASEI-MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVD  121 (145)
T ss_dssp             CCSSCBHHHH-CBCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccCHHHH-cCCCEEEcCCCCHHHHHHHHHHcCceEEEEEe
Confidence             011334554 46678899999999999999999999999999

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.49  E-value=1.3e-15  Score=131.11  Aligned_cols=92  Identities=10%  Similarity=0.242  Sum_probs=42.5

Q ss_pred             cEEEEeCCCCccHHHHHHHHhcCCceeeeeeC--CCCcEEEEEEhhhhhccCCC-Cccccccccc--ccceeeCCCCCHH
Q 010325          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSG--NPKNIIGLLLVKSLLTVRPE-TETPVSAVSI--RRIPRVPSDMPLY  311 (513)
Q Consensus       237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~--~~d~ivGiV~~kDLl~~~~~-~~~~v~dim~--~~~~~Vpe~~~l~  311 (513)
                      +++++++++++. ++++.|.+++++++||+++  ..++++|+|+.+|+...... .+.++..++.  .+++++++++++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            667899999999 9999999999999999974  24789999999998654322 2234455543  4578899999999


Q ss_pred             HHHHHHHhCCceEEEEEe
Q 010325          312 DILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       312 d~L~~m~~~~~~~a~VVD  329 (513)
                      ++++.|++++.+.+||||
T Consensus        84 ~a~~~m~~~~i~~lpVVd  101 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVN  101 (120)
T ss_dssp             HHHHHTCSCC---CEEEE
T ss_pred             HHHHHHHHcCccEEEEEc
Confidence            999999999999999999

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.13  E-value=1.6e-06  Score=74.04  Aligned_cols=40  Identities=8%  Similarity=0.126  Sum_probs=38.1

Q ss_pred             cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..||+++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd   43 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN   43 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEec
Confidence            3589999999999999999999999999999999999999

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.11  E-value=6.9e-07  Score=76.11  Aligned_cols=59  Identities=15%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      -.+.+++++|++  +++++.+++++. ++++.|.++++.++||++++ ++++|+|+.+|++..
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDV  120 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            357889999996  788999999998 99999999999999999865 899999999999864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=8.1e-07  Score=75.00  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=52.7

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      .....++++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++++.
T Consensus        64 ~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          64 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  122 (123)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             cccceEEEEeec--cceeeeecchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhhC
Confidence            356678999986  888999999998 9999999999999999985  6899999999998754

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=2e-06  Score=75.16  Aligned_cols=60  Identities=27%  Similarity=0.350  Sum_probs=53.8

Q ss_pred             cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      ...+.+|+++|++  +++++.+++++. ++++.|.+++++++||++++ ++++|+|+.+|++++
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKV  154 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGGG
T ss_pred             cccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            4577899999997  788999999998 99999999999999999876 899999999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.98  E-value=2.1e-06  Score=73.24  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=54.0

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      +.+.+++++|++  +++++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++..
T Consensus        71 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          71 ISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLY  130 (135)
T ss_dssp             HHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGG
T ss_pred             cccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            345789999987  888999999998 99999999999999999865 8999999999999764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.97  E-value=6.1e-06  Score=71.28  Aligned_cols=61  Identities=11%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~  287 (513)
                      ..+.+++++|+.  +++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.+..
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHHh
Confidence            456689999985  889999999998 99999999999999999875 89999999999997643

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=5.4e-06  Score=71.95  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=54.1

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|++  +++++.+++++. ++++.|.++++.++||++++ ++++|+|+.+|++...
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHH
Confidence            456789999996  888999999998 99999999999999999865 8999999999998653

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.87  E-value=2e-06  Score=72.35  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=46.1

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      .+..+.++|+.+.+++++.++.++. +++++|.+++++++||++++ ++++|+|+.+|+++.
T Consensus        59 ~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          59 HDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             -------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             cCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            3567888998888999999999998 99999999999999999876 899999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=97.87  E-value=5.6e-06  Score=71.17  Aligned_cols=38  Identities=13%  Similarity=0.077  Sum_probs=36.1

Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++|+|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd   40 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD   40 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeec
Confidence            57889989999999999999999999999999999999

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.85  E-value=8.4e-06  Score=68.96  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=51.8

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      .+.+++++|++  ++.++++++++. ++++.|.+++.+++||+++  ++++|+|+.+|++++
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence            45789999996  888999999999 9999999999999999984  799999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.84  E-value=6.4e-06  Score=69.02  Aligned_cols=58  Identities=22%  Similarity=0.294  Sum_probs=52.4

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      +.+.+++++|++  ++.++++++++. ++++.|.+++..++||.++  ++++|+++.+|++++
T Consensus        61 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A  118 (120)
T d1pbja3          61 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRA  118 (120)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             ccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhc
Confidence            467789999986  788999999998 9999999999999999864  799999999999865

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.82  E-value=6.8e-06  Score=69.48  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+..|++++
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~lvGiit~~Dll~~  122 (127)
T d2ef7a1          65 LETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRA  122 (127)
T ss_dssp             TTCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHH
T ss_pred             ccchhhhhhhh--hccccccccchh-HHHHHHHHcCceEEEEEeCC-CeEEEEEEHHHHHHH
Confidence            34678999986  888899999998 99999999999999999765 899999999999865

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.80  E-value=1e-05  Score=67.99  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=48.7

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+..++++|.+  +++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.+.
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~  116 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHT
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            345679999986  788999999998 99999999999999999865 8999999999998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=97.77  E-value=9e-06  Score=69.12  Aligned_cols=39  Identities=15%  Similarity=0.127  Sum_probs=35.4

Q ss_pred             ccccccc--cccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          291 TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       291 ~~v~dim--~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      .+++++|  .+++++|.++.++.++++.|.+++.+.+||+|
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd   42 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD   42 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEee
Confidence            4577887  46889999999999999999999999999999

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.66  E-value=1.4e-05  Score=68.21  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=36.5

Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +|+++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~   40 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID   40 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccc
Confidence            68899999999999999999999999999999999999

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.63  E-value=2.4e-05  Score=67.87  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             cccHHHHHHHHHHhhhhhc----cCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCc
Q 010325          186 LFRRAQLKALVTIHSQEAG----KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS  261 (513)
Q Consensus       186 ~~s~eeL~~lv~~~~~e~~----~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~s  261 (513)
                      .++..++..++.-......    +......................++++|.+  .++++++++++. ++++.|.+++++
T Consensus        59 ~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v~  135 (160)
T d2d4za3          59 SIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLD  135 (160)
T ss_dssp             EEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTCS
T ss_pred             cchHHHHHHHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCCe
Confidence            4577888777653221110    001111223344455566777788999987  788899999999 999999999999


Q ss_pred             eeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          262 RVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       262 r~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      ++||.++  |+++|+|+.+||+++
T Consensus       136 ~l~V~d~--g~lvGiIt~~Di~k~  157 (160)
T d2d4za3         136 RAYVTSM--GKLVGVVALAEIQAA  157 (160)
T ss_dssp             EEEEEET--TEEEEEEEHHHHHHH
T ss_pred             EEEEEEC--CEEEEEEEHHHHHHH
Confidence            9999874  799999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.63  E-value=3.5e-05  Score=64.89  Aligned_cols=63  Identities=16%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             hhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          220 ALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       220 vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ....+......+|++  +++++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++++.
T Consensus        54 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          54 ISDYNAPISEHMTSE--HLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVI  116 (126)
T ss_dssp             CSCSSSBTTTSCCCS--CCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             hhccCCceeeeeecc--ceeecCCCCCHH-HHHHHHHhcCCcEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence            333333334444443  677899999998 99999999999999999765 8999999999999753

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=2.7e-05  Score=66.72  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd   42 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA   42 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEE
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEec
Confidence            4566788899999999999999999999999999999

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.59  E-value=2.8e-05  Score=65.59  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=35.8

Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +|+++|.++++++++++++.++++.|.+++.+..||++
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~   39 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTA   39 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEE
Confidence            57899999999999999999999999999999999995

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.4e-05  Score=69.15  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=53.0

Q ss_pred             CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      ..+.+++++|+|  +++++++++++. ++++.|.+++..++||.++  ++++|+|+.+|++++.
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI  155 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            457789999997  788999999998 9999999999999999874  7899999999999754

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=2.5e-05  Score=65.34  Aligned_cols=55  Identities=13%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccc
Q 010325          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL  348 (513)
Q Consensus       292 ~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~  348 (513)
                      .++++|.+++++|.+++++.++++.|.+++.+.+||+|+.|...|++  |.+|+++.
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii--~~~dl~~~   56 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV--NKEDLLDL   56 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEE--EGGGGTTS
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEe--ehhhhhhh
Confidence            46788999999999999999999999999999999999999999999  87887643

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.00011  Score=62.65  Aligned_cols=34  Identities=9%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             cccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       296 im~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ++..++.+|.+++++.+|++.|.+++...+||+|
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd   47 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID   47 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence            3567889999999999999999999999999999

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=4.2e-05  Score=66.56  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=50.6

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~  286 (513)
                      .+.++|++  +++++++++++. ++++.|.+++..++||++++.++++|+|+.+|++++.
T Consensus        97 ~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          97 VYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             eeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            45778886  888999999998 9999999999999999986658999999999999753

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.24  E-value=0.00016  Score=62.60  Aligned_cols=31  Identities=10%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++++|.+++++.++++.|.+++...+||+|
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd   42 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVN   42 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeec
Confidence            4788999999999999999999999999999

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.15  E-value=0.00017  Score=61.74  Aligned_cols=55  Identities=9%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (513)
Q Consensus       227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~  285 (513)
                      ++...|.+  +++++++++++. ++++.|.+++..++||++++ ++++|+|+.+||+.+
T Consensus        85 ~~~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~l~GiVt~~dii~~  139 (145)
T d2v8qe1          85 QHRSHYFE--GVLKCYLHETLE-AIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQA  139 (145)
T ss_dssp             GGCCSCCC--SCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred             chhhhccC--CCeEECCCCcHH-HHHHHHHHcCceEEEEEccC-CEEEEEEEHHHHHHH
Confidence            34555664  777899999998 99999999999999999764 899999999999875

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.83  E-value=0.00037  Score=61.52  Aligned_cols=39  Identities=10%  Similarity=-0.075  Sum_probs=34.6

Q ss_pred             cccccccc--ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       291 ~~v~dim~--~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      ..+.|+|.  .+++++++++++.+|++.|.+++.+.+||+|
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd   60 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD   60 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEe
Confidence            35667764  5788999999999999999999999999999

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

Probab=93.92  E-value=0.0057  Score=46.79  Aligned_cols=44  Identities=25%  Similarity=0.213  Sum_probs=39.8

Q ss_pred             ccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325          368 EKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       368 ~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~  411 (513)
                      ..++.|.+++.++++++++.+...+|.+ +.|++||++ ...++|.
T Consensus         3 ~~Dg~~~v~G~~~l~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~   48 (78)
T d2o1ra1           3 QSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPD   48 (78)
T ss_dssp             CTTSCEEEETTCBHHHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred             ecCCEEEEEeeCCHHHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence            4678999999999999999999999987 999999999 7788865

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

Probab=92.57  E-value=0.0087  Score=46.29  Aligned_cols=47  Identities=13%  Similarity=0.036  Sum_probs=41.4

Q ss_pred             cccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cc
Q 010325          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      +..++.|.|++.++++++++.+...++.+ +.|++||++ ...++|. |+
T Consensus         2 ki~d~~~~v~G~~~l~dl~~~l~~~l~~~~~dTlgG~v~~~lg~iP~~Ge   51 (84)
T d2rk5a1           2 EIADNTYIVLGTMTLNDFNEYFETDLESDNVDTIAGFYLTGVGTIPSQEE   51 (84)
T ss_dssp             EEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCCSSS
T ss_pred             EecCCEEEEEeeeEHHHHHHHhCCCcccccchhHHHHHHHHhCcCCCCCC
Confidence            45678999999999999999999999987 999999999 7788875 44

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=92.20  E-value=0.011  Score=45.90  Aligned_cols=48  Identities=8%  Similarity=0.015  Sum_probs=42.6

Q ss_pred             ccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325          364 SKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       364 ~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~  411 (513)
                      .+.+..++.|.|++.++++++++.++..++.+ +.|++||+. .+.++|.
T Consensus         4 ~I~~~~~~~~~v~g~~~l~dl~~~~~~~l~~~~~~TigG~i~~~l~~iP~   53 (84)
T d2plia1           4 NIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPV   53 (84)
T ss_dssp             SEEEEETTEEEEETTCBHHHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCC
T ss_pred             ceEEeCCCEEEEEecCCHHHHHHHhCCCCCccccHHHHHHHHHHhCcccc
Confidence            35677889999999999999999999999987 999999999 7777764

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

Probab=91.77  E-value=0.016  Score=44.86  Aligned_cols=50  Identities=16%  Similarity=0.048  Sum_probs=42.1

Q ss_pred             ccccccCCceEecCCCCCccccccccccccC---CCCccccccc-cccccCC-Cc
Q 010325          364 SKQDEKTESVVVDVDRPLSSGSMNRLSSSQR---SDSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       364 ~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~---~~~t~~gl~~-~~~~~e~-g~  413 (513)
                      ..++..++.|.|++.++++++++.+...++.   ++.|++||++ ...++|. |+
T Consensus         4 ~~~~~~dg~~~v~G~~~l~dl~~~l~~~l~~e~~~~~TlgG~i~~~lg~iP~~Ge   58 (85)
T d2p13a1           4 VAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGE   58 (85)
T ss_dssp             SEEECTTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHHHHHHHSSCCCTTC
T ss_pred             ccEEcCCCeEEEEecCCHHHHHHHHCCCCCCccccceEHHHHHHHHhCcCCCCCC
Confidence            3567788999999999999999999998864   2789999999 7788865 44

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.56  E-value=0.013  Score=45.24  Aligned_cols=46  Identities=15%  Similarity=0.026  Sum_probs=40.6

Q ss_pred             ccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       366 ~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~  411 (513)
                      ++...+.|.+++.++++++++.+...++.+ +.|++|+++ .+.++|.
T Consensus         4 ~~i~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~TigG~i~~~lg~iP~   51 (84)
T d2r2za1           4 TQVADNEYLVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPD   51 (84)
T ss_dssp             EEEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHSSCCC
T ss_pred             EEECCCEEEEEeeCCHHHHHHHHCcCCCCccchhHHHHHHHHhCcCCC
Confidence            456778899999999999999999999987 899999998 7777764

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=91.18  E-value=0.016  Score=46.25  Aligned_cols=50  Identities=18%  Similarity=0.280  Sum_probs=43.5

Q ss_pred             cccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Ccc
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GEV  414 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~l  414 (513)
                      +.+...+.|.+++.++++++++.++..++.. +.|++||++ ...++|. |+.
T Consensus         3 I~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~~~~~lg~iP~~Ge~   55 (98)
T d2p3ha1           3 ITETSPDKWLIDGDTPLDEVERAIGYELPEGDYETISGLLFDHANALLKTGDV   55 (98)
T ss_dssp             EEEEETTEEEEETTCBHHHHHHHHTSCCCCSSCCBHHHHHHHHHCSCCCTTCE
T ss_pred             cEEeCCCEEEEEeccCHHHHHHHHCCCCCCCCccCHHHHHHHHHCcCCCCCCE
Confidence            4567788999999999999999999999987 999999999 8888875 444

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

Probab=89.87  E-value=0.029  Score=43.51  Aligned_cols=50  Identities=12%  Similarity=-0.041  Sum_probs=41.0

Q ss_pred             cccccCCceEecCCCCCcccccccccccc-----C-CCCccccccc-cccccCC-Ccc
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQ-----R-SDSTTNGLIY-ASEDIED-GEV  414 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~-----~-~~~t~~gl~~-~~~~~e~-g~l  414 (513)
                      +.+..++.|++++.++++++++.++..+|     . ++.|++||++ .+.++|. |+.
T Consensus         3 Iv~~~dg~~~v~G~~~l~dl~~~~~~~l~~~~~~~~~~~TlgG~il~~lg~iP~~Ge~   60 (87)
T d3deda1           3 IVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDR   60 (87)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCCTTCE
T ss_pred             cEEecCCeEEEEeeCCHHHHHHHhCCCCCCCccccccccCHHHHHHHHhCcCCCCCCE
Confidence            34567889999999999999999999885     2 2889999999 7788865 443

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=89.42  E-value=0.028  Score=43.59  Aligned_cols=49  Identities=16%  Similarity=0.086  Sum_probs=37.9

Q ss_pred             cccccCCceEecCCCCCccccccccccccCC----CCccccccc-cccccCC-Cc
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS----DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~----~~t~~gl~~-~~~~~e~-g~  413 (513)
                      +.+..+++|.+++.++++++++.++..+|..    +.|++||++ ...++|. |+
T Consensus         5 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~e~~~~~Tl~G~i~~~lg~iP~~Ge   59 (87)
T d2oaia1           5 MVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHVGE   59 (87)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHHHHHHHSSCCCTTC
T ss_pred             eEEcCCCEEEEEecCCHHHHHHHHCCCCCcccccccccHHHHHHHHhCcCCCCCC
Confidence            4566789999999999999999999998642    789999999 7788864 44

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

Probab=88.05  E-value=0.049  Score=41.66  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=37.9

Q ss_pred             ccCCceEecCCCCCccccccccccc--cCC-CCccccccc-cccccCC-Cc
Q 010325          368 EKTESVVVDVDRPLSSGSMNRLSSS--QRS-DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       368 ~~~~~~~vd~~~~i~~~~~~~~~~l--~~~-~~t~~gl~~-~~~~~e~-g~  413 (513)
                      ..++.|.+++.++++++++.++..+  +.. +.|++||++ ...++|. |+
T Consensus         3 ~dd~~~~v~g~~~l~d~~~~~~~~~~~~~~~~~TlgG~i~~~lg~iP~~Ge   53 (82)
T d2p4pa1           3 RNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRKIPKKTD   53 (82)
T ss_dssp             CCCSEEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCTTC
T ss_pred             EcCCEEEEEeeCCHHHHHHHhCCCCCCcccCccCHHHHHHHHhCcCCCCCC
Confidence            4678899999999999999999865  333 789999999 7788864 44

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.79  E-value=0.049  Score=41.85  Aligned_cols=46  Identities=13%  Similarity=0.040  Sum_probs=38.1

Q ss_pred             ccCCceEecCCCCCccccccccccccC---C--CCccccccc-cccccCC-Cc
Q 010325          368 EKTESVVVDVDRPLSSGSMNRLSSSQR---S--DSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       368 ~~~~~~~vd~~~~i~~~~~~~~~~l~~---~--~~t~~gl~~-~~~~~e~-g~  413 (513)
                      +.++.|.+++.++++++++.++..++.   +  +.|++||++ ...++|. |+
T Consensus         4 ~~dg~~~v~G~~~l~dl~~~l~~~~~~~~e~~~~~Tl~G~i~~~lg~iP~~Ge   56 (84)
T d2plsa1           4 REDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGD   56 (84)
T ss_dssp             CTTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCCTTC
T ss_pred             ecCCeEEEEccCCHHHHHHHHCCCCCcccccccccCHHHHHHHHhCccCCCCC
Confidence            468899999999999999999987642   2  789999999 7788864 44

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=86.13  E-value=0.07  Score=41.17  Aligned_cols=49  Identities=14%  Similarity=0.098  Sum_probs=40.1

Q ss_pred             cccccCCceEecCCCCCcccccccccccc------CCCCccccccc-cccccCC-Cc
Q 010325          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQ------RSDSTTNGLIY-ASEDIED-GE  413 (513)
Q Consensus       365 ~~~~~~~~~~vd~~~~i~~~~~~~~~~l~------~~~~t~~gl~~-~~~~~e~-g~  413 (513)
                      ..+..++.|.+++.++++++++.++..++      .++.|++|+++ ...++|. |+
T Consensus         3 ~~ki~d~~~~v~G~~~l~dl~~~l~~~l~~~~~~~~~~~Ti~G~i~~~lg~iP~~Ge   59 (87)
T d2nqwa1           3 FKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGD   59 (87)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHTCCTTTTHHHHTTCSBHHHHHHHHHCSCCCTTC
T ss_pred             eEEECCCEEEEEEeCCHHHHHHHhCCCcccccCcccceeeHHHHHHHHhCccccCCe
Confidence            34567889999999999999999998774      24899999999 7778854 44

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

Probab=85.69  E-value=0.069  Score=40.21  Aligned_cols=41  Identities=24%  Similarity=0.148  Sum_probs=35.4

Q ss_pred             CceEecCCCCCccccccccccccCC---CCccccccc-cccccCC
Q 010325          371 ESVVVDVDRPLSSGSMNRLSSSQRS---DSTTNGLIY-ASEDIED  411 (513)
Q Consensus       371 ~~~~vd~~~~i~~~~~~~~~~l~~~---~~t~~gl~~-~~~~~e~  411 (513)
                      ++|.|++.++++++++.+...++.+   +.|++||++ ...+++.
T Consensus         1 ~s~~vdG~~~i~dl~~~l~~~~~~~~~~~~Ti~G~vl~~lg~iP~   45 (76)
T d2o3ga1           1 ESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPD   45 (76)
T ss_dssp             CCSEEETTCBHHHHTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCC
T ss_pred             CeEEEEcCCCHHHHHHHHCcCCCccccccccHHHHHHHHhCcCCC
Confidence            3689999999999999999998853   679999999 7788864

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=83.98  E-value=0.0054  Score=55.31  Aligned_cols=57  Identities=14%  Similarity=0.033  Sum_probs=47.0

Q ss_pred             CcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325          271 KNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (513)
Q Consensus       271 d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD  329 (513)
                      +++.|+....++....  ....+++++...+.++..+++.+.+-+.|.+++...+||+|
T Consensus       119 ~~l~~f~dl~~l~~~~--~~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~  175 (213)
T d1lkvx_         119 RRMFVFEDILKLDDRS--IQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLK  175 (213)
T ss_dssp             HHHCCGGGGGGSCHHH--HHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHH
T ss_pred             hhccccccHHHHcccc--HhHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHH
Confidence            5788888888776542  23567787777788899999999999999999999999999