Citrus Sinensis ID: 010341

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
MMKTPLKGQGERRMSPVTIQILQLQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
ccccccccccccccccccHHHcccccccccccccccEEEccccccccccccEEEccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHcccccc
ccccccccccccccccEEEEEEEEcccccccccccccEEcccccHcccccEEEEEEEcccccEcHHHHccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccccccccHHHccccccccccccccccccccccccHEcccccccccccHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccccc
mmktplkgqgerrmspvTIQILqlqpgqgagegkralyhcnycnkditgkirikcavcpdfdlcIECFSVgvevhphksnhpyrvmdnlsfplicpdwnaddEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYtnvymnspffplpdmshvvgKNRKELLAMAKghiddkkgpskpgeatvkeespfspsrvkieemhkvgpsgrglnadpqtersskgkkpvtsgndgpslvelsgynskrqefdpeydNDAEQLLAEMefkdadseeERDIKLRVLRIYSKRLDERKRRKDFilernllypnpfekdlspeeRELCRRYDVFmrfhskedHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAkegghagassqgganVFMASEslrkdsnsnsrpsgqassshvndLYIMGFNETQLLSEAEKRLCCEirlapplyLRMQEVMSREIfsgnvnnkadahhlfkiepskidRVYDMLVKKGLAPP
mmktplkgqgerrmspVTIQILQLQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAkghiddkkgpskpgeatvkeespfspsrvkIEEMhkvgpsgrglnadpqtersskgkkpvtsgndgpsLVELSGYNSKRQEFDPEYDNDAEQLLAEMefkdadseeerdiklrvlriyskrlderkrrkdfilernllypnpfekdlspeeRELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLkearaagcrtsaeadrylelkrgREAEEASrrakegghagassqggaNVFMASESLRKDsnsnsrpsgqassshvNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHhlfkiepskidrvYDMLVKKGLAPP
MMKTPLKGQGERRMSPVTIQILQLQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELkrgreaeeasrrakegghagassqggaNVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
******************IQILQL*****AGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGK**********************************************************************************************************************IKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFE*******RELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRI******************************************************************************NDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLV*******
************************************LYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNR***************************************************************************************EFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNP***********LCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGR**************************************************VNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS***NNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
*************MSPVTIQILQLQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHI********************SPSRVKIEEMHKVG***************************GPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEF********RDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRG*********************GGANVFMASES******************HVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
*************MSPVTIQILQLQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHI****************ESPFSPSRVK***********************************GPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEE***********************************************NDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMKTPLKGQGERRMSPVTIQILQLQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query512 2.2.26 [Sep-21-2011]
Q9ATB4487 Transcriptional adapter A yes no 0.880 0.926 0.661 0.0
Q75LL6567 Transcriptional adapter A yes no 0.916 0.827 0.588 1e-168
Q9SFD5548 Transcriptional adapter A no no 0.939 0.877 0.487 1e-128
Q02336434 Transcriptional adapter 2 yes no 0.814 0.960 0.299 1e-60
Q9P7J7437 Transcriptional adapter 2 yes no 0.800 0.938 0.296 2e-49
O75478443 Transcriptional adapter 2 yes no 0.783 0.905 0.279 1e-39
Q3SZP8443 Transcriptional adapter 2 yes no 0.783 0.905 0.279 1e-39
Q6AYE3443 Transcriptional adapter 2 yes no 0.783 0.905 0.277 1e-39
Q6NRB5420 Transcriptional adapter 2 N/A no 0.691 0.842 0.255 1e-31
Q5RBN9420 Transcriptional adapter 2 no no 0.691 0.842 0.251 3e-30
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1 Back     alignment and function desciption
 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/487 (66%), Positives = 383/487 (78%), Gaps = 36/487 (7%)

Query: 24  LQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPY 83
           L PG   G GK   Y+C+YC KDITGKIRIKCAVCPDFDLCIEC SVG E+ PHK +HPY
Sbjct: 35  LVPGAEGG-GK---YNCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPY 90

Query: 84  RVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMN 143
           RVM NL+FPLICPDW+ADDE+LLLEG+E+YGLGNWAE+AEHVGTK+KE C+EHY N+Y+N
Sbjct: 91  RVMGNLTFPLICPDWSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLN 150

Query: 144 SPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHK 203
           SPFFPLPDMSHV GKNRKEL AMAKG IDDKK      E  +KEE PFSP +VK+E+  K
Sbjct: 151 SPFFPLPDMSHVAGKNRKELQAMAKGRIDDKK-----AEQNMKEEYPFSPPKVKVEDTQK 205

Query: 204 VGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAE 263
                     +   +RS  GKKPV++  +  SLVELS YN KR+EFDPEYDNDAEQLLAE
Sbjct: 206 ----------ESFVDRSFGGKKPVSTSVNN-SLVELSNYNQKREEFDPEYDNDAEQLLAE 254

Query: 264 MEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCR 323
           MEFK+ D+ EE ++KLRVLRIYSKRLDERKRRK+FI+ERNLLYPNPFEKDLS EE+  CR
Sbjct: 255 MEFKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQCR 314

Query: 324 RYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREA 383
           R DVFMRFHSKE+H++LL+ V+SE+R +KR++DLKEA+ AGCR++AEA+RYL  KR RE 
Sbjct: 315 RLDVFMRFHSKEEHDELLRNVVSEYRMVKRLKDLKEAQVAGCRSTAEAERYLGRKRKREN 374

Query: 384 EEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNET 443
           EE   R KE G  G          +A E         SRP  QASSS+VNDL ++GF E+
Sbjct: 375 EEGMNRGKESGQFGQ---------IAGE-------MGSRPPVQASSSYVNDLDLIGFTES 418

Query: 444 QLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDM 503
           QLLSE+EKRLC E++L PP+YL+MQ+VMS EIF GNV  K+DA+ LFKI+P+K+DRVYDM
Sbjct: 419 QLLSESEKRLCSEVKLVPPVYLQMQQVMSHEIFKGNVTKKSDAYSLFKIDPTKVDRVYDM 478

Query: 504 LVKKGLA 510
           LVKKG+A
Sbjct: 479 LVKKGIA 485
Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known (By similarity). ADA2 stimulates the acetyltransferase activity of GCN5 on free histones or nucleosomes, probably by opening up the promoter region. Mediates auxin and cytokinin signals in the control of cell proliferation and might be involved in repression of a freezing tolerance pathway at warm temperature.
Arabidopsis thaliana (taxid: 3702)
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2 Back     alignment and function description
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1 SV=1 Back     alignment and function description
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ada2 PE=1 SV=1 Back     alignment and function description
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3 Back     alignment and function description
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1 Back     alignment and function description
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2 SV=1 Back     alignment and function description
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2 SV=1 Back     alignment and function description
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
255563796541 transcriptional adaptor, putative [Ricin 0.937 0.887 0.743 0.0
359495620553 PREDICTED: transcriptional adapter ADA2b 0.939 0.869 0.741 0.0
449443500552 PREDICTED: transcriptional adapter ADA2b 0.943 0.875 0.708 0.0
297736705539 unnamed protein product [Vitis vinifera] 0.898 0.853 0.712 0.0
224139474505 histone acetyltransferase complex compon 0.916 0.928 0.746 0.0
224086542496 histone acetyltransferase complex compon 0.904 0.933 0.736 0.0
356557975554 PREDICTED: transcriptional adapter ADA2b 0.929 0.859 0.677 0.0
356532351497 PREDICTED: transcriptional adapter ADA2b 0.886 0.913 0.709 0.0
357447981551 Histone acetyltransferase complex compon 0.927 0.862 0.650 0.0
42572927483 transcriptional adapter ADA2b [Arabidops 0.873 0.925 0.663 0.0
>gi|255563796|ref|XP_002522899.1| transcriptional adaptor, putative [Ricinus communis] gi|223537884|gb|EEF39499.1| transcriptional adaptor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/511 (74%), Positives = 429/511 (83%), Gaps = 31/511 (6%)

Query: 27  GQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVM 86
           GQG  EGKRALYHCNYCNKDITGKIRIKCA+CPDFDLCIECFSVG EV PHKSNHPY+VM
Sbjct: 37  GQGTSEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYKVM 96

Query: 87  DNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPF 146
           DNLSFPLICP+WNADDE LLLEGIEMYGLGNW E+AEHVGTK+KE+CIEHYTN+YMNSPF
Sbjct: 97  DNLSFPLICPNWNADDETLLLEGIEMYGLGNWTEVAEHVGTKSKEMCIEHYTNIYMNSPF 156

Query: 147 FPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGP 206
           FPLPDMSHVVGKNRKELLAMA+GH +DKKG S  GE T+KEESPFSPSRVK     + G 
Sbjct: 157 FPLPDMSHVVGKNRKELLAMAQGHGEDKKGSSMLGEHTLKEESPFSPSRVKYAFYVESGI 216

Query: 207 SGRGLNA-------------------------DPQTERSSKGKKPVTSGNDGPSLVELSG 241
               LNA                         +PQT+RS KGKKP +SG +G SL+E SG
Sbjct: 217 RPNSLNAAATSAIKKASKIARVKDGSNIVKVEEPQTDRSFKGKKPNSSGKNG-SLIESSG 275

Query: 242 YNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILE 301
           YN+KRQEFDPEYDNDAEQLLAEM+FKD D+E+ER++KLRVLRIYSKRLDERKRRKDFILE
Sbjct: 276 YNAKRQEFDPEYDNDAEQLLAEMDFKDTDTEDERELKLRVLRIYSKRLDERKRRKDFILE 335

Query: 302 RNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEAR 361
           RNLLYPN FEKDLSPEE+ LCRRYDVFMRFHSKE+HE+LLQTVISEHRTLKRIQ+LKEAR
Sbjct: 336 RNLLYPNLFEKDLSPEEKALCRRYDVFMRFHSKEEHEELLQTVISEHRTLKRIQELKEAR 395

Query: 362 AAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSNS 421
           AAGC +SA+ADRYLE KR REAEE+S+RAKE G  G S+QGG NVF+ S+S+ KD  SNS
Sbjct: 396 AAGCHSSADADRYLEQKRKREAEESSQRAKESGQVGPSNQGGPNVFIGSDSISKD--SNS 453

Query: 422 RPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVN 481
           RP+GQ   S+VNDL  +GF+E QLL+E+EKRLC EI+L P +YL+MQEVM++EIF GNV 
Sbjct: 454 RPAGQ---SYVNDLERLGFSEAQLLTESEKRLCQEIKLPPAVYLKMQEVMTKEIFIGNVT 510

Query: 482 NKADAHHLFKIEPSKIDRVYDMLVKKGLAPP 512
            KADAH LFK+E SK+DRVYD+LVKKG+A P
Sbjct: 511 KKADAHPLFKLEASKVDRVYDVLVKKGIAQP 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495620|ref|XP_002262737.2| PREDICTED: transcriptional adapter ADA2b-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443500|ref|XP_004139515.1| PREDICTED: transcriptional adapter ADA2b-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297736705|emb|CBI25741.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224139474|ref|XP_002323129.1| histone acetyltransferase complex component [Populus trichocarpa] gi|222867759|gb|EEF04890.1| histone acetyltransferase complex component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224086542|ref|XP_002307906.1| histone acetyltransferase complex component [Populus trichocarpa] gi|222853882|gb|EEE91429.1| histone acetyltransferase complex component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557975|ref|XP_003547285.1| PREDICTED: transcriptional adapter ADA2b-like [Glycine max] Back     alignment and taxonomy information
>gi|356532351|ref|XP_003534737.1| PREDICTED: transcriptional adapter ADA2b-like [Glycine max] Back     alignment and taxonomy information
>gi|357447981|ref|XP_003594266.1| Histone acetyltransferase complex component [Medicago truncatula] gi|355483314|gb|AES64517.1| Histone acetyltransferase complex component [Medicago truncatula] Back     alignment and taxonomy information
>gi|42572927|ref|NP_974560.1| transcriptional adapter ADA2b [Arabidopsis thaliana] gi|332658345|gb|AEE83745.1| transcriptional adapter ADA2b [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
TAIR|locus:2130609487 ADA2B "homolog of yeast ADA2 2 0.646 0.679 0.705 5e-166
DICTYBASE|DDB_G0280079914 ada2 "transcriptional adapter 0.654 0.366 0.386 2e-68
SGD|S000002856434 ADA2 "Transcription coactivato 0.316 0.373 0.372 2.3e-62
CGD|CAL0000716445 ADA2 [Candida albicans (taxid: 0.238 0.274 0.442 5.4e-59
UNIPROTKB|Q59WH0445 ADA2 "Putative uncharacterized 0.238 0.274 0.442 5.4e-59
GENEDB_PFALCIPARUM|PF10_0143 2578 PF10_0143 "transcriptional act 0.521 0.103 0.293 1.6e-50
UNIPROTKB|Q8IJP9 2578 PF10_0143 "Transcriptional act 0.521 0.103 0.293 1.6e-50
UNIPROTKB|G4N4E8546 MGG_05099 "Transcriptional ada 0.599 0.562 0.338 1.1e-42
ASPGD|ASPL0000000727517 adaB [Emericella nidulans (tax 0.630 0.624 0.301 2e-41
POMBASE|SPCC24B10.08c437 ada2 "SAGA complex subunit Ada 0.361 0.423 0.360 7.4e-40
TAIR|locus:2130609 ADA2B "homolog of yeast ADA2 2B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1300 (462.7 bits), Expect = 5.0e-166, Sum P(2) = 5.0e-166
 Identities = 249/353 (70%), Positives = 291/353 (82%)

Query:    24 LQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPY 83
             L PG   G GK   Y+C+YC KDITGKIRIKCAVCPDFDLCIEC SVG E+ PHK +HPY
Sbjct:    35 LVPGAEGG-GK---YNCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPY 90

Query:    84 RVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMN 143
             RVM NL+FPLICPDW+ADDE+LLLEG+E+YGLGNWAE+AEHVGTK+KE C+EHY N+Y+N
Sbjct:    91 RVMGNLTFPLICPDWSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLN 150

Query:   144 SPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHK 203
             SPFFPLPDMSHV GKNRKEL AMAKG IDDKK      E  +KEE PFSP +VK+E+  K
Sbjct:   151 SPFFPLPDMSHVAGKNRKELQAMAKGRIDDKKA-----EQNMKEEYPFSPPKVKVEDTQK 205

Query:   204 VGPSGRGLNADPQTERSSKGKKPV-TSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLA 262
                       +   +RS  GKKPV TS N+  SLVELS YN KR+EFDPEYDNDAEQLLA
Sbjct:   206 ----------ESFVDRSFGGKKPVSTSVNN--SLVELSNYNQKREEFDPEYDNDAEQLLA 253

Query:   263 EMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELC 322
             EMEFK+ D+ EE ++KLRVLRIYSKRLDERKRRK+FI+ERNLLYPNPFEKDLS EE+  C
Sbjct:   254 EMEFKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQC 313

Query:   323 RRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYL 375
             RR DVFMRFHSKE+H++LL+ V+SE+R +KR++DLKEA+ AGCR++AEA+RYL
Sbjct:   314 RRLDVFMRFHSKEEHDELLRNVVSEYRMVKRLKDLKEAQVAGCRSTAEAERYL 366
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009631 "cold acclimation" evidence=IMP
GO:0003713 "transcription coactivator activity" evidence=IDA
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IMP
GO:0042127 "regulation of cell proliferation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
DICTYBASE|DDB_G0280079 ada2 "transcriptional adapter 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000002856 ADA2 "Transcription coactivator" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0000716 ADA2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59WH0 ADA2 "Putative uncharacterized protein ADA2" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0143 PF10_0143 "transcriptional activator ADA2, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJP9 PF10_0143 "Transcriptional activator ADA2, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4E8 MGG_05099 "Transcriptional adapter 2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000727 adaB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPCC24B10.08c ada2 "SAGA complex subunit Ada2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75LL6TADA2_ORYSJNo assigned EC number0.58820.91600.8271yesno
Q9ATB4TAD2B_ARATHNo assigned EC number0.66110.88080.9260yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009957001
SubName- Full=Chromosome undetermined scaffold_1717, whole genome shotgun sequence; Flags- Fragment; (483 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
COG5114432 COG5114, COG5114, Histone acetyltransferase comple 2e-78
cd0233549 cd02335, ZZ_ADA2, Zinc finger, ZZ type 8e-27
cd0224946 cd02249, ZZ, Zinc finger, ZZ type 1e-12
smart0029144 smart00291, ZnF_ZZ, Zinc-binding domain, present i 3e-12
COG5259531 COG5259, RSC8, RSC chromatin remodeling complex su 6e-12
pfam0443380 pfam04433, SWIRM, SWIRM domain 1e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 8e-10
pfam0056946 pfam00569, ZZ, Zinc finger, ZZ type 1e-09
cd0234043 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type 4e-09
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 5e-09
cd0233849 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type 1e-07
cd0234549 cd02345, ZZ_dah, Zinc finger, ZZ type 4e-07
cd0233741 cd02337, ZZ_CBP, Zinc finger, ZZ type 6e-07
cd0233945 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type 3e-05
cd0233449 cd02334, ZZ_dystrophin, Zinc finger, ZZ type 4e-05
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 1e-04
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.002
cd0233645 cd02336, ZZ_RSC8, Zinc finger, ZZ type 0.002
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information 
 Score =  252 bits (644), Expect = 2e-78
 Identities = 140/484 (28%), Positives = 214/484 (44%), Gaps = 76/484 (15%)

Query: 38  YHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPD 97
            HC+ C  D+T    IKC  CP  DLC+ CF  G+E   H   H YR+++  S+P+    
Sbjct: 6   IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETNSYPIGEEG 65

Query: 98  WNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVG 157
           W AD+E+LL+E ++  GLGNW +IA+++G++ KE    HY  +Y  S ++PLPD++  + 
Sbjct: 66  WGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPLPDITQNIH 125

Query: 158 KNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQT 217
             + E L   +  I+              E  P +P                        
Sbjct: 126 VPQDEFLEQRRHRIE------------TFELPPINP------------------------ 149

Query: 218 ERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDI 277
                 +KP  S    P   E+ GY   R EFD EY N+AE  + +M F     E ++ +
Sbjct: 150 ------RKPKAS---NPYCHEIQGYMPGRLEFDVEYMNEAEVPIKDMSFDGDKEELKKKL 200

Query: 278 KLRVLRIYSKRLDERKRRKDFILERNLL-YPN--PFEKDLSPEERELCRRYDVFMRFHSK 334
           K   L IY+ RL  R RRK  I  +NL+ Y N    +K  S EE  L      F R+ +K
Sbjct: 201 KNATLDIYNSRLTFRARRKHAIFGKNLMDYRNLQAKDKKRSKEECGLVNSIKWFARYLTK 260

Query: 335 EDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGG 394
            D     + ++      KRI +L+E R  G  T     +Y          E  +  K G 
Sbjct: 261 SDFNVFFRDILEGVYIEKRIHELQEWRNNGLTTLEAGLKY----------ERDKFEKFGA 310

Query: 395 HAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDL---------YIMGFNETQL 445
              AS   G        + R  SNS  R + + S   V ++          I    +  L
Sbjct: 311 STAASLSEG--------NSRYRSNSAHRSNAEYSQMDVKNILPSKNMTISDIQHAPDYAL 362

Query: 446 LSEAEKRLCCEIRLAPPLYLRMQEVMSRE-IFSGNVNNKADAHHLFKIEPSKIDRVYDML 504
           LS+ E+RLC  + ++P  YL +++ +    + +     K D + LF I+  K D +YD  
Sbjct: 363 LSDDEQRLCETLNISPKPYLELKKEVISCFLRTRGEFTKEDFNRLFGIDLGKADGLYDFF 422

Query: 505 VKKG 508
           +++G
Sbjct: 423 LERG 426

Length = 432
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|203011 pfam04433, SWIRM, SWIRM domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239077 cd02337, ZZ_CBP, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|239076 cd02336, ZZ_RSC8, Zinc finger, ZZ type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 512
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 100.0
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 100.0
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 99.68
PF0443386 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM 99.5
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 99.47
KOG1279506 consensus Chromatin remodeling factor subunit and 99.33
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 99.28
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 99.25
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 99.24
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 99.22
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.12
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 99.1
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 99.01
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 99.0
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 99.0
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 98.92
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 98.86
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 98.86
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 98.78
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.71
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.66
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.61
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.59
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 98.46
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 98.4
PLN03212249 Transcription repressor MYB5; Provisional 98.23
KOG4286966 consensus Dystrophin-like protein [Cell motility; 98.09
PLN03091459 hypothetical protein; Provisional 97.99
KOG1280381 consensus Uncharacterized conserved protein contai 97.97
KOG4582278 consensus Uncharacterized conserved protein, conta 97.92
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.86
PLN03212249 Transcription repressor MYB5; Provisional 97.73
PLN03091459 hypothetical protein; Provisional 97.38
KOG4301434 consensus Beta-dystrobrevin [Cytoskeleton] 97.35
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.05
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.47
KOG0049 939 consensus Transcription factor, Myb superfamily [T 95.8
KOG0051607 consensus RNA polymerase I termination factor, Myb 94.29
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 93.86
PF0764930 C1_3: C1-like domain; InterPro: IPR011424 This sho 92.28
PF0310730 C1_2: C1 domain; InterPro: IPR004146 This short do 90.97
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 90.15
KOG0051607 consensus RNA polymerase I termination factor, Myb 87.77
COG5147512 REB1 Myb superfamily proteins, including transcrip 86.04
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 85.11
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 83.72
PF0220771 zf-UBR: Putative zinc finger in N-recognin (UBR bo 83.31
KOG4167907 consensus Predicted DNA-binding protein, contains 83.12
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 82.67
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 82.37
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-105  Score=815.96  Aligned_cols=421  Identities=50%  Similarity=0.831  Sum_probs=371.5

Q ss_pred             cCCcccccCccCCCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeecCCCCCccCCCCCchhHHHHHHHHHHhC
Q 010341           35 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYG  114 (512)
Q Consensus        35 ~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~~~~~p~~~~~Wt~~Ee~~Lleai~~~G  114 (512)
                      ...|+|++|..+|++.+||+|++|++||||+.||+.|+|++.|+++|+|+||++++||+.+++|||+||++||+|+++||
T Consensus        12 g~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~~i~~~~WtadEEilLLea~~t~G   91 (438)
T KOG0457|consen   12 GGKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDTNSFPILDPSWTADEEILLLEAAETYG   91 (438)
T ss_pred             CCCCCCccHhHHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecCCCCCCCCCCCChHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHhCCCCHHHHHHHHHhhccCCCCCCCCCCcccccCchHHHHHHhccCCCCCCCCCCCCCCCccCCCCCCCc
Q 010341          115 LGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPS  194 (512)
Q Consensus       115 ~gnW~~IA~~vg~rt~~ec~~hy~~~y~~~~~~plp~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~  194 (512)
                      ||||++||+|||+||.+||++||.++|++++++|+|+++..+++++.+++++.+.+.                 .|+.|.
T Consensus        92 ~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~~-----------------~~~~~~  154 (438)
T KOG0457|consen   92 FGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNRA-----------------EPFQPT  154 (438)
T ss_pred             CCcHHHHHHHHcccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhccccc-----------------ccCCCC
Confidence            999999999999999999999999999999999999999999999999998877531                 234332


Q ss_pred             hhhhhhhhcCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccccccccCCCCCCCcccCcchHhhhhccccCCCCCHHH
Q 010341          195 RVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEE  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~e~~GYmP~R~DFe~EydNdAE~li~dl~f~~~D~~~e  274 (512)
                      ..                            -|+.++.++|..++++||||+|.|||.||||+||++|+||+|+++|+|.+
T Consensus       155 ~~----------------------------~pr~p~~~~p~~~e~~gyMp~R~dFd~Eydn~AE~li~dm~f~e~D~~~d  206 (438)
T KOG0457|consen  155 DL----------------------------VPRKPGVSNPLRREISGYMPGRLDFDEEYDNEAEQLIRDMEFEEDDTEED  206 (438)
T ss_pred             CC----------------------------CCCCCCCCCchHHHHhhhCccchhhhhhhcchhhhhHhhcccCCCCcHHH
Confidence            10                            13444456789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCCCCCChhHHHHHHhhcccccCCChhHHHHHHHHHHHHHHHH
Q 010341          275 RDIKLRVLRIYSKRLDERKRRKDFILERNLLYP---NPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTL  351 (512)
Q Consensus       275 ~elKl~~l~iYn~rL~ER~rRK~~i~e~~Ll~~---~~~~k~~skeere~~~~l~~far~~~~~~~~~l~~~l~~E~~Lr  351 (512)
                      .+||+++|+|||+||+||.|||++|++|||+++   ++.++++|+|||++++++|+||||+|+.||++|+.++..|.+|+
T Consensus       207 ~elKla~ldiY~srl~eR~RRK~~I~d~nLl~~rk~q~~e~~~skEer~l~~s~k~fAR~~t~~d~~kfl~~~~eE~~L~  286 (438)
T KOG0457|consen  207 HELKLAVLDIYNSRLKERKRRKRFIRDRNLLDYRKNQAMEKRLSKEERELYNSIKVFARFLTKSDHDKFLGSVAEEKELR  286 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHhhccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999995   88899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCCCCcccccccccccCCCCC--CCCCCCCCC
Q 010341          352 KRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSN--SRPSGQASS  429 (512)
Q Consensus       352 ~rI~~L~~~R~~Gittl~e~~~ye~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  429 (512)
                      .||++||+||.+|+||++++.+|+.+|.++ .+.+......++...+    +.     .+ .....++.  +....+...
T Consensus       287 ~ri~~lqE~R~ag~tt~~e~~ky~~~k~~~-~~~s~~~~~~~~~~~~----i~-----~~-~~~~~~~~~~~~v~~~~~~  355 (438)
T KOG0457|consen  287 KRISDLQEYRSAGLTTNAEPNKYERLKFKE-FRESTALLLSSGALRY----IK-----NS-NQEASGSASKRPVQQQSIY  355 (438)
T ss_pred             HHHHHHHHHHHhcceeccccchhHHHHHHH-HHHHhhhccccchhhh----hh-----cc-ccccccccccCcccccccc
Confidence            999999999999999999999999999443 3333222222211100    00     00 00111111  122233456


Q ss_pred             CCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCC
Q 010341          430 SHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL  509 (512)
Q Consensus       430 ~~~~~l~i~~~pg~~lLs~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gw  509 (512)
                      ++++++++.++++.++||++|+.||+.++|+|++||.+|++|.+|..++|.+++++|+.++|||++|+++|||||+++||
T Consensus       356 ~~~~~~~~~~~~~~q~Lse~E~~lc~~~~~~p~~yLe~~~vl~~e~~k~~~~kks~a~~l~Kid~~Kvd~vyd~~~~~~~  435 (438)
T KOG0457|consen  356 KSATPLDISGAPDTQLLSEDEKRLCQELKILPKLYLELKEVLSREIKKGGTLKKSDAYRLFKIDPRKVDRVYDFLIAQGW  435 (438)
T ss_pred             cCCCHHHHhcchhhhhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHhccCcccchhHHHHhcCCcchHHHHHHHHHHhhh
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 010341          510 AP  511 (512)
Q Consensus       510 i~  511 (512)
                      +.
T Consensus       436 ~~  437 (438)
T KOG0457|consen  436 IG  437 (438)
T ss_pred             cc
Confidence            96

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines Back     alignment and domain information
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
2elk_A58 Solution Structure Of The Sant Domain Of Fission Ye 1e-08
1x41_A60 Solution Structure Of The Myb-Like Dna Binding Doma 5e-06
2elj_A88 Solution Structure Of The Swirm Domain Of Baker's Y 2e-05
2cuj_A108 Solution Structure Of Swirm Domain Of Mouse Transcr 4e-05
2aqe_A90 Structural And Functional Analysis Of Ada2 Alpha Sw 6e-05
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast Spcc24b10.08c Protein Length = 58 Back     alignment and structure 
Iteration: 1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 97  DWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYM 142
           +W AD+E+LL++  E  GLGNWA+IA++VG  +TKE C +HY   Y+
Sbjct: 11  NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of Human Transcriptional Adaptor 2-Like, Isoform B Length = 60 Back     alignment and structure
>pdb|2ELJ|A Chain A, Solution Structure Of The Swirm Domain Of Baker's Yeast Transcriptional Adapter 2 Length = 88 Back     alignment and structure
>pdb|2CUJ|A Chain A, Solution Structure Of Swirm Domain Of Mouse Transcriptional Adaptor 2-Like Length = 108 Back     alignment and structure
>pdb|2AQE|A Chain A, Structural And Functional Analysis Of Ada2 Alpha Swirm Domain Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 7e-23
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 8e-23
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 8e-23
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 4e-22
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 2e-21
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 4e-21
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 2e-19
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 2e-14
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 1e-13
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 2e-06
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 3e-06
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 5e-06
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 4e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 5e-05
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 8e-05
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 9e-05
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 2e-04
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 4e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-04
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
 Score = 91.5 bits (227), Expect = 7e-23
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 97  DWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVV 156
           +W   + +LLLE +EMY   +W +++EHVG++T++ CI H+  + +  P+    D     
Sbjct: 20  EWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSGPSS 78

Query: 157 G 157
           G
Sbjct: 79  G 79
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Length = 90 Back     alignment and structure
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Length = 108 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Length = 88 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 99.94
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 99.94
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 99.93
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.58
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.45
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.42
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 99.34
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 99.11
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.1
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.08
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.04
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.02
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 98.97
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 98.97
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.96
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.95
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.92
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.87
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.84
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.77
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 98.76
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.2
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.7
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.68
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.67
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.65
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.6
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.58
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.58
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.56
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.47
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.47
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.46
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.41
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.41
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.4
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.38
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.36
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.34
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.31
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.31
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.27
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.1
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.07
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.97
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.9
2crg_A70 Metastasis associated protein MTA3; transcription 97.88
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 97.85
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.75
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.58
2fq3_A104 Transcription regulatory protein SWI3; four-helix 96.33
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 96.29
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 96.09
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 95.93
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 95.87
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 95.45
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 95.37
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 95.18
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 94.86
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 94.49
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 93.9
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 92.64
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 93.46
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 90.05
3ny3_A75 E3 ubiquitin-protein ligase UBR2; zinc finger-like 89.02
3nis_A82 E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig 88.61
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 88.44
1v5n_A89 PDI-like hypothetical protein AT1G60420; DC1 domai 87.86
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 86.27
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Back     alignment and structure
Probab=99.94  E-value=3.8e-27  Score=203.60  Aligned_cols=86  Identities=29%  Similarity=0.478  Sum_probs=82.4

Q ss_pred             CCCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHH
Q 010341          427 ASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVK  506 (512)
Q Consensus       427 ~~~~~~~~l~i~~~pg~~lLs~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~  506 (512)
                      ..++.+.+|||+++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+++||++|+++|||||++
T Consensus        22 ~~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~  101 (108)
T 2cuj_A           22 SGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIR  101 (108)
T ss_dssp             CCCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred             CCCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 010341          507 KGLAPP  512 (512)
Q Consensus       507 ~Gwi~~  512 (512)
                      +|||++
T Consensus       102 ~GWi~~  107 (108)
T 2cuj_A          102 EGYITK  107 (108)
T ss_dssp             TTSSCC
T ss_pred             cCCCCC
Confidence            999974
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Back     alignment and structure
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 512
d2cuja1101 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, 6e-23
d2fc7a169 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p 3e-15
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 2e-14
d2dipa185 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p 7e-11
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 6e-10
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 7e-06
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-05
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-05
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 1e-04
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-04
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-04
d2cqqa159 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 0.001
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 0.001
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 0.001
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcriptional adaptor 2-like, TADA2L
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.0 bits (226), Expect = 6e-23
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 410 SESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQE 469
           S S+   SNS  R +          L + G   T+ L+E EK LC  +RL P  YL  + 
Sbjct: 6   SPSVLMASNSGRRSA--------PPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKS 57

Query: 470 VMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKG 508
            +  E         A A  L KI+ +K  ++YD L+++G
Sbjct: 58  ALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 96
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
d2cuja1101 Transcriptional adaptor 2-like, TADA2L {Mouse (Mus 99.94
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.52
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.2
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.18
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.04
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 98.97
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.95
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.94
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.9
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.89
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.89
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.81
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.74
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 98.62
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 98.59
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.57
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.35
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.3
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.76
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.55
d2fq3a185 Transcription regulatory protein swi3 {Baker's yea 97.48
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.35
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 96.97
d2dw4a1102 Lysine-specific histone demethylase 1, LSD1 {Human 96.48
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 95.99
d1v5na_89 Pdi-like hypothetical protein At1g60420 {Thale cre 93.74
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 90.84
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 84.36
d2cuqa132 Four and a half LIM domains 3, FHL3 {Human (Homo s 80.61
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcriptional adaptor 2-like, TADA2L
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.8e-27  Score=201.52  Aligned_cols=84  Identities=30%  Similarity=0.487  Sum_probs=81.1

Q ss_pred             CCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHC
Q 010341          428 SSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKK  507 (512)
Q Consensus       428 ~~~~~~~l~i~~~pg~~lLs~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~  507 (512)
                      .++..+||||+++||++|||++|++||+++||+|.+||.+|++||+|++++|.++++||+.+++||++|+++|||||+++
T Consensus        16 ~rk~~~pldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~l~~E~~k~g~l~k~da~~~~kiD~~K~~rIydfl~~~   95 (101)
T d2cuja1          16 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE   95 (101)
T ss_dssp             CCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCccCCCChhhcCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 010341          508 GLAP  511 (512)
Q Consensus       508 Gwi~  511 (512)
                      |||+
T Consensus        96 GWi~   99 (101)
T d2cuja1          96 GYIT   99 (101)
T ss_dssp             TSSC
T ss_pred             cCcc
Confidence            9996
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure