Citrus Sinensis ID: 010343
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | 2.2.26 [Sep-21-2011] | |||||||
| O82390 | 512 | Sodium-dependent phosphat | yes | no | 0.982 | 0.982 | 0.754 | 0.0 | |
| Q9SDI4 | 529 | Probable anion transporte | yes | no | 0.810 | 0.784 | 0.893 | 0.0 | |
| Q8GX78 | 541 | Probable anion transporte | no | no | 0.914 | 0.865 | 0.763 | 0.0 | |
| Q652N5 | 591 | Probable anion transporte | no | no | 0.923 | 0.800 | 0.747 | 0.0 | |
| Q7XJR2 | 512 | Probable anion transporte | no | no | 0.871 | 0.871 | 0.397 | 8e-91 | |
| Q66GI9 | 533 | Probable anion transporte | no | no | 0.843 | 0.810 | 0.407 | 1e-87 | |
| Q8W0H5 | 519 | Probable anion transporte | no | no | 0.771 | 0.761 | 0.409 | 6e-87 | |
| Q3E9A0 | 517 | Probable anion transporte | no | no | 0.796 | 0.789 | 0.420 | 2e-86 | |
| Q53WP9 | 535 | Probable anion transporte | no | no | 0.808 | 0.773 | 0.395 | 1e-81 | |
| Q2QWW7 | 439 | Probable anion transporte | no | no | 0.806 | 0.940 | 0.366 | 6e-74 |
| >sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/521 (75%), Positives = 431/521 (82%), Gaps = 18/521 (3%)
Query: 1 MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPR-LLLGVLSGDRVCSFRVS 53
M+ARAL S + S PP ++ ++ R L+P P+ L + + +R FRV
Sbjct: 1 MNARALLCSSNIHSLYTSNRPPEKTSSSRSLR-NLKPS--PKSLRVWIYPRNRSSVFRVL 57
Query: 54 VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVLCFS 111
VR + + E D + D+ DS S ++PWWEEFPKRW IV+LCFS
Sbjct: 58 VRSSDKSE----SSNSYYVEG--DKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFS 111
Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
AFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 112 AFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRV 171
Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
LGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ERSRS
Sbjct: 172 LGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRS 231
Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
LALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP EDP L
Sbjct: 232 LALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL 291
Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
P E+KLI +CASKEPVK+IPW LILSKPPVWALI HFCHNWGTFILLTWMPTYY+QV
Sbjct: 292 LPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQV 351
Query: 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411
L FNL ESGL V PW+TMA SAN GGWIADTLVS+G SVT VRKIMQ+IGFLGPAFFLT
Sbjct: 352 LKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLT 411
Query: 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGT 471
QL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV GT
Sbjct: 412 QLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGT 471
Query: 472 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
AATG+ILQHGSWDDVF +SVGLYLVGT +WNLFSTGEK++D
Sbjct: 472 AATGHILQHGSWDDVFTISVGLYLVGTVIWNLFSTGEKIID 512
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Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/415 (89%), Positives = 383/415 (92%)
Query: 98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQI 157
+FPKRW IV LCFSAFLLCNMDRVNMSIAILPMSAEF WNP TVGLIQSSFFWGYLLTQI
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174
Query: 158 AGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
AGGIWADTVGGK VLGFGV+WWSIATALTP AAKLGLPFLLV R FMG+GEGVAMPAMNN
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234
Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
ILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LIH FGWPSVFYSFGSLG WF+ W
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294
Query: 278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337
SKA+SSP EDP + EKKLI S EPVK IPWGLILSKPPVWALIVSHFCHNWGT
Sbjct: 295 ASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354
Query: 338 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 397
FILLTWMPTYYNQVL FNLTESGLFCVLPWLTMA SAN GGWIADTLVS+GLSVTTVRKI
Sbjct: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKI 414
Query: 398 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLG 457
MQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDI PRY+GVLLG
Sbjct: 415 MQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLG 474
Query: 458 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV LYLVGT VWNLFSTGEK++D
Sbjct: 475 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/470 (76%), Positives = 405/470 (86%), Gaps = 2/470 (0%)
Query: 45 DRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS--ESLVPWWEEFPKR 102
D V FR S++ +S +Y SE+S E + +E + V+ ++ PWW++FP+R
Sbjct: 72 DSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGSAEAILVEGNLQNASPWWQQFPRR 131
Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
W IV+LCFS+FLLCNMDRVNMSIAILPMS E+NW+ ATVGLIQSSFFWGYLLTQI GGIW
Sbjct: 132 WVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIW 191
Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
AD GGK VLGFGVVWWS AT +TP+AA+LGLPFLLVVR FMGIGEGVAMPAMNN+LSKW
Sbjct: 192 ADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKW 251
Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282
+PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG++WF +WL A+
Sbjct: 252 IPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAY 311
Query: 283 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342
SSP +DP L EKK+I+ +EPV IPW LILSKPPVWALI+SHFCHNWGTFILLT
Sbjct: 312 SSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLT 371
Query: 343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402
WMPTYYNQVL FNLTESGL CVLPWLTMA AN+GGWIADTLVS+GLS+T VRKIMQSIG
Sbjct: 372 WMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIG 431
Query: 403 FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTA 462
FLGPAFFL+QLSHV +PAMAVLCMACSQG+DAFSQSGLYSNHQDI PRY+GVLLGLSNTA
Sbjct: 432 FLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTA 491
Query: 463 GVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
GVLAGVFGTAATGYILQ GSWDDVFKV+V LYL+GT VWNLF+TGEK++D
Sbjct: 492 GVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFATGEKILD 541
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Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/484 (74%), Positives = 407/484 (84%), Gaps = 11/484 (2%)
Query: 35 PRLLLGVLSGDRVC---SFRVSVR---DVKSESYNVSEKSVKFEEALKDIALRSEDLGVD 88
PR S D C +++ VR D K+E Y ++ + + D+ + +G D
Sbjct: 113 PRRWDNFTSLDTACVQPDYKIPVRTRADCKAEQYEITGSPL----SPSDVPAEAVLIG-D 167
Query: 89 SESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSF 148
+ + PWW++FPKRW +V+LCF +FLLCNMDRVNMSIAILPMS+EF W+PATVGLIQSSF
Sbjct: 168 TNEISPWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSF 227
Query: 149 FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE 208
FWGYLLTQI GGIWAD GGK VLGFGVVWWSIAT LTP+AAK+GLPFLLV+R FMGIGE
Sbjct: 228 FWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGE 287
Query: 209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
GVAMPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LI RFGWPSVFY+FGS
Sbjct: 288 GVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGS 347
Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIV 328
LG+VWF +W KAHSSP+EDP+L AEK+ I+ KEPV +IPW LILSKPPVWALIV
Sbjct: 348 LGSVWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSIPWKLILSKPPVWALIV 407
Query: 329 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 388
SHFCHNWGTFILLTWMPTYYNQVL FNLTESGL CVLPWLTMA AN+GGWIADTLV +G
Sbjct: 408 SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRG 467
Query: 389 LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA 448
+S+T VRKIMQSIGFLGPA FLT LS V +PAMAVLCMACSQG+DAFSQSGLYSNHQDI
Sbjct: 468 VSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIG 527
Query: 449 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE 508
PRY+GVLLGLSNTAGVLAGVFGTAATGYILQ GSWD VF+V+V LY+VGT VWN+FSTGE
Sbjct: 528 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQKGSWDSVFQVAVVLYIVGTVVWNVFSTGE 587
Query: 509 KVVD 512
KV++
Sbjct: 588 KVLE 591
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 184/463 (39%), Positives = 267/463 (57%), Gaps = 17/463 (3%)
Query: 55 RDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFL 114
R+ ++ N S + E L G SE++ P+R +V+L
Sbjct: 59 RNAAAKKRNQSPERCAAEGVLTG--------GGGSEAIAEVRTMMPERIKVVILTACMMC 110
Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
LCN DRV MS+A++P++ + W+ + +G++QSSF WGY+ + + GG D GGK VL +
Sbjct: 111 LCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAW 170
Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
GV WS+AT LTP AA LL VR F G+ EGVAMP+M +LS+W P+ ER+ ++ +
Sbjct: 171 GVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGI 230
Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
+G ++G+V GL +P ++ G F F SLG +W + W S ++P + P + +
Sbjct: 231 SMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRS 290
Query: 295 EKKLIVS------SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
E +LI + S S +P ++ L+LSK P WA+I ++ +NWG F+LL+WMP Y+
Sbjct: 291 ELRLIQAGKPVQPSTISPKPNPSLR--LLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYF 348
Query: 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 408
V + NL ++ F LPW TMA S G +D L+ G SVT+VRKIMQSIGF+GP
Sbjct: 349 QTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGL 408
Query: 409 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 468
L L+ SP+ A + M + +FSQ+G N QDIAP+Y+G L G+SN AG LA +
Sbjct: 409 SLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAI 468
Query: 469 FGTAATGYILQ-HGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 510
T TGY +Q GS+ V+ LY T W LF+TGE+V
Sbjct: 469 VSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERV 511
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Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 180/442 (40%), Positives = 264/442 (59%), Gaps = 10/442 (2%)
Query: 79 ALRSEDLGVDSESLVPWWEEF--PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW 136
A R+ + + P + EF +R +V + A LCN DRV MS+AI+P+S W
Sbjct: 86 ARRTPEETAAELTAQPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGW 145
Query: 137 NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF 196
+ + G++QSSF WGYL++ IAGG D GGK V+ +GV WS+AT LTP AA L
Sbjct: 146 SKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWA 205
Query: 197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256
LL R +G+ EGVA+P MNN++++W P ERSR++ + +G LG+V GL SP L+ +
Sbjct: 206 LLAARAMVGVAEGVALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQ 265
Query: 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE-----KKLIVSSCASKEPVKT 311
G F FG G +W VWLS S+P PQ+ +E +K +S+ +K +
Sbjct: 266 GGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTS 325
Query: 312 --IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT 369
P+G +LSK P WA+IV++ H+WG F++L+WMP Y+N V H NL ++ F +PW
Sbjct: 326 GIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSM 385
Query: 370 MAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACS 429
MAF+ + G+ +D L+ +G S+T RKIMQSIGF+GP L L+ P +A ++ +
Sbjct: 386 MAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLA 445
Query: 430 QGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFK 488
G +FS G N Q+IAP YSGVL G+ TAG LA + GT G+ ++ GS+
Sbjct: 446 VGLKSFSHLGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFIL 505
Query: 489 VSVGLYLVGTAVWNLFSTGEKV 510
++ LYL+ +N+++TGE+V
Sbjct: 506 LTAILYLLSALFYNIYATGERV 527
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 239/403 (59%), Gaps = 8/403 (1%)
Query: 116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG 175
CN DRV MS+AI+P+S + W P+ G++QSSF WGYL++ I GG D GGK V+ +G
Sbjct: 111 CNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYG 170
Query: 176 VVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV 235
V WS+AT L+P AA L L RV +G+ EGVA+P+MNN++ +W P ERS ++ +
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIA 230
Query: 236 YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE 295
+G LG+ GL SP ++ R G F FG G +W VW+S +P E+ Q+ E
Sbjct: 231 MAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHE 290
Query: 296 -------KKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
+KL+ + + K P+ +LSK P WALI ++ H+WG F++L+WMP Y+
Sbjct: 291 LDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYF 350
Query: 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 408
+ H NL E+ F LPW+ MA + G ++D L+ G S+T RKIMQ+IGF+GP
Sbjct: 351 KTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGV 410
Query: 409 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 468
L L+ SP +A + + G +F SG N Q+IAP+Y+GVL G+SNTAG A +
Sbjct: 411 ALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGTFAAI 470
Query: 469 FGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 510
GT G+ + GS+ ++ LY T W++F+TGE+V
Sbjct: 471 LGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERV 513
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 179/426 (42%), Positives = 258/426 (60%), Gaps = 18/426 (4%)
Query: 94 PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
P W+ P+R+ ++ AF++CNMD+VN+SIAI+PMS +F W+ + GL+QSSFFWGY
Sbjct: 90 PPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYA 149
Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
L+Q+ GG + GG+ VL GV WS ATAL P+ A +P L+ R+ +GIGEGV+
Sbjct: 150 LSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPS 208
Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
A +++++ +PV ERSR++ V+ G+ LGSV GL +P +I F W SVFY FG LG W
Sbjct: 209 AATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGW 268
Query: 274 FT--VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEP----VKTIPWGLILSKPPVWALI 327
F +L++ S + ++ + K S A+KE +K IPW P VWA+I
Sbjct: 269 FVGFQFLNEEEVS-YKGNEISTSHK----SENATKEELGSSLKEIPWKSFFQSPAVWAMI 323
Query: 328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 387
+HFC +WG + L+W+PTY+++ L NLTE+ +LP L +L AD L++
Sbjct: 324 YTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITN 383
Query: 388 GLSVTTVRKIMQSIGFLGPAFFLTQLSHVD---SPAMAVLCMACSQGTDAFSQSGLYSNH 444
G+ TTVRKI Q+I F+ PA +T LS VD P V + +F+ SGLY H
Sbjct: 384 GVDTTTVRKICQTIAFVAPAICMT-LSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTH 442
Query: 445 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWD-DVFKVSVGLYLVGTAVWN 502
QDI+P Y+ +LLG++NT G + G+ G A TG++L SW +F S+ YL GT VW
Sbjct: 443 QDISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWL 502
Query: 503 LFSTGE 508
F++ E
Sbjct: 503 AFASSE 508
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/417 (39%), Positives = 241/417 (57%), Gaps = 3/417 (0%)
Query: 99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
P+R +V L + LLCN DRV MS+A++P +A++ W+ + +G++QSSF WGY+ + +
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178
Query: 159 GGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI 218
GG AD GGK V+ WS+AT LTP AA LL +R G+ EGVA P M+
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238
Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
L KW P ER+ ++ + G +LG+V +P ++ G F F SLG +W +VWL
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298
Query: 279 SKAHSSPAEDPQLRPAEKKLIVSS-CASKEPVKTIP-WGLILSKPPVWALIVSHFCHNWG 336
S P + + +E +LI++ ASK P ILSK +WA+IV++ +NWG
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWG 358
Query: 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK 396
F+LL+WMP Y+ V + NL ++ F +PW MA S + G AD L+ G SV VRK
Sbjct: 359 YFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRK 418
Query: 397 IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLL 456
IMQSIGF+GP L L +P++A + M + +FSQ+G + N QDIAP+Y+G L
Sbjct: 419 IMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLH 478
Query: 457 GLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
GL+N G +A + T TGY +Q GS+ ++ LY T +N ++TG+ + D
Sbjct: 479 GLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDLIFD 535
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 248/434 (57%), Gaps = 21/434 (4%)
Query: 98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQI 157
+FPKR+ IV+L F +C ++RV SIA + N A G+I S F++GY+L+QI
Sbjct: 8 KFPKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQI 67
Query: 158 AGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
GG A +GG+ VL V WS+ L P+ K + L++ R+F+G+ +G PA++
Sbjct: 68 PGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREV-ILVLSRLFVGVAQGFIFPAIHT 126
Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
+L++WVP ERSRS++L SGMYLG+ G+ F P L+ G SVF+ LG W +W
Sbjct: 127 VLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIW 186
Query: 278 LSKAHSSPAED------PQLRPAEK-KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSH 330
L + P D P++ EK K + VK IPW I+ PVWA++V++
Sbjct: 187 LKFSSEPPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVK-IPWRRIIFSLPVWAIVVNN 245
Query: 331 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG-L 389
F ++ ++L+ W+PTY+ L +L + G +LP+ M +N+GG +AD L+++ L
Sbjct: 246 FTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRIL 305
Query: 390 SVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP 449
S+T RK++ +IGF+ A L L +P+ VLC + S G A ++G NH D+AP
Sbjct: 306 SITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNHMDVAP 365
Query: 450 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVGLYLVGT 498
+++G+++G+SNTAG LAG+ G TG IL+ +W VF V L + +
Sbjct: 366 KFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSS 425
Query: 499 AVWNLFSTGEKVVD 512
++ +FSTGEK+ +
Sbjct: 426 IIFLIFSTGEKIFE 439
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| 224104305 | 520 | predicted protein [Populus trichocarpa] | 0.968 | 0.953 | 0.801 | 0.0 | |
| 255569283 | 530 | Sodium-dependent phosphate transport pro | 0.982 | 0.949 | 0.788 | 0.0 | |
| 449515105 | 528 | PREDICTED: sodium-dependent phosphate tr | 1.0 | 0.969 | 0.789 | 0.0 | |
| 225434656 | 514 | PREDICTED: sodium-dependent phosphate tr | 0.982 | 0.978 | 0.795 | 0.0 | |
| 224054558 | 431 | predicted protein [Populus trichocarpa] | 0.835 | 0.993 | 0.918 | 0.0 | |
| 356539597 | 511 | PREDICTED: sodium-dependent phosphate tr | 0.884 | 0.886 | 0.855 | 0.0 | |
| 358346124 | 516 | Sodium-dependent phosphate transport pro | 0.890 | 0.883 | 0.837 | 0.0 | |
| 388500962 | 516 | unknown [Medicago truncatula] | 0.890 | 0.883 | 0.832 | 0.0 | |
| 297826359 | 512 | hypothetical protein ARALYDRAFT_481880 [ | 0.976 | 0.976 | 0.763 | 0.0 | |
| 312281837 | 510 | unnamed protein product [Thellungiella h | 0.976 | 0.980 | 0.756 | 0.0 |
| >gi|224104305|ref|XP_002313389.1| predicted protein [Populus trichocarpa] gi|222849797|gb|EEE87344.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/533 (80%), Positives = 453/533 (84%), Gaps = 37/533 (6%)
Query: 2 SARALFYS---PI---LQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR 55
++RAL YS P L+SPP IS+ + RPR + + + R C FRVSVR
Sbjct: 3 TSRALLYSFTDPTFRPLKSPPDISSPKR------RPRERLNFRVRLHTDHRCCVFRVSVR 56
Query: 56 ------------DVKSESYNVSE---KSVKFEE-ALKDIALRSEDLGVDSESLVPWWEEF 99
DVKSE Y + E +S K EE AL D+ L +S VPWWEEF
Sbjct: 57 NSGRGETGKVYADVKSEPYEILETVPESAKLEEDALDDVVL---------DSTVPWWEEF 107
Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
PKRW IV+LCFSAFL CNMDRVNMSIAILPMSAE NWNPATVGLIQSSFFWGYLLTQ+AG
Sbjct: 108 PKRWVIVILCFSAFLPCNMDRVNMSIAILPMSAENNWNPATVGLIQSSFFWGYLLTQVAG 167
Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
GIWADTVGGK VLGF V+WWSIAT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNIL
Sbjct: 168 GIWADTVGGKKVLGFAVIWWSIATILTPVAAKVGLPFLLVVRAFMGIGEGVAMPAMNNIL 227
Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
SKWVPV+ERSRSLA VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVWF WLS
Sbjct: 228 SKWVPVSERSRSLAFVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWFAAWLS 287
Query: 280 KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339
KAHSSP +DPQLRPAEKKLI ++ SKEPV++IPW LILSK PVWALIVSHFCHNWGTFI
Sbjct: 288 KAHSSPLDDPQLRPAEKKLIFANSFSKEPVESIPWRLILSKAPVWALIVSHFCHNWGTFI 347
Query: 340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 399
LLTWMPTYYNQVL FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ
Sbjct: 348 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 407
Query: 400 SIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 459
SIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS
Sbjct: 408 SIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 467
Query: 460 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 468 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKILD 520
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569283|ref|XP_002525609.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis] gi|223535045|gb|EEF36727.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/539 (78%), Positives = 454/539 (84%), Gaps = 36/539 (6%)
Query: 1 MSARALFY---SPILQSPPYISARNKLSRAELRPRGLPR-------LLLGVLSGDRVCSF 50
MSARAL Y +P+ + + K S ++ P PR + L G F
Sbjct: 1 MSARALLYYSSAPLFRPRKTDISVPKKSFGQIIPDLKPRESFNFRVVRLQPEGGSCSGLF 60
Query: 51 RVSVR--------------DVKSESYNVSE---KSVKFEEALKDIALRSEDLGVDSESLV 93
RVS DVKSE Y +SE +SVKFE++L G DSES +
Sbjct: 61 RVSAHKSSRSRSEFVKVHADVKSERYKISESVPESVKFEDSLS---------GNDSESSL 111
Query: 94 PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
PWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVGLIQSSFFWGYL
Sbjct: 112 PWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVGLIQSSFFWGYL 171
Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
LTQIAGGIWADTVGGK VLGFGVVWWSIATALTPVAAK GLPFLLVVRVFMGIGEGVAMP
Sbjct: 172 LTQIAGGIWADTVGGKLVLGFGVVWWSIATALTPVAAKFGLPFLLVVRVFMGIGEGVAMP 231
Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
AM NILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT+W
Sbjct: 232 AMTNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTIW 291
Query: 274 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
F VWL+KA+SSP +DPQLRP EK+LI+++ A KEPVK IPWGLILSKPPVWALIVSHFCH
Sbjct: 292 FAVWLNKAYSSPLDDPQLRPEEKQLIIANSACKEPVKVIPWGLILSKPPVWALIVSHFCH 351
Query: 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 393
NWGTFILLTWMPTYYNQVL F+LTESGL CVLPWLTMAFSANLGGWIADTLVSKG SVTT
Sbjct: 352 NWGTFILLTWMPTYYNQVLKFDLTESGLVCVLPWLTMAFSANLGGWIADTLVSKGYSVTT 411
Query: 394 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSG 453
VRKIMQ+IGFLGPAFFLTQLSH++SPAMAVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG
Sbjct: 412 VRKIMQTIGFLGPAFFLTQLSHINSPAMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSG 471
Query: 454 VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK+VD
Sbjct: 472 VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIVD 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515105|ref|XP_004164590.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/528 (78%), Positives = 448/528 (84%), Gaps = 16/528 (3%)
Query: 1 MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR----- 55
M+A AL YS P + K S E RP+ R L VL DR F++S R
Sbjct: 1 MAAGALLYSFSPTPPNPSDSFKKFSLTERRPKFPSRFHLTVLPEDRCFVFQISARRHSGG 60
Query: 56 --------DVKSESYNVSEK---SVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWF 104
D+KS Y+VS K SVKF ++ L ++ + +PWW++FPKRW
Sbjct: 61 RGNWRLWTDLKSNPYDVSIKPPNSVKFNSSIDKSVLDDDEEEDELGDELPWWKQFPKRWL 120
Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
IV LCFSAFLLCNMDRVNMSIAILPMSAE+NWNP TVGLIQSSFFWGYLLTQIAGGIWAD
Sbjct: 121 IVSLCFSAFLLCNMDRVNMSIAILPMSAEYNWNPQTVGLIQSSFFWGYLLTQIAGGIWAD 180
Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
TVGGK VLGFGV+WWS+AT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVP
Sbjct: 181 TVGGKLVLGFGVIWWSVATVLTPVAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVP 240
Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 284
VAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVF+SFGSLG VWF VWL+KAHSS
Sbjct: 241 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFFSFGSLGAVWFAVWLNKAHSS 300
Query: 285 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344
P +DPQLRP EKKLI ++ SKEPVK+IPWG ILSKPPVWALIVSHFCHNWGTFILLTWM
Sbjct: 301 PLDDPQLRPQEKKLIFANSVSKEPVKSIPWGTILSKPPVWALIVSHFCHNWGTFILLTWM 360
Query: 345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 404
PTYY+QVL FNLTESGL CVLPWLTMAFSANLGGWIADTLVS+GLSVTTVRKIMQSIGFL
Sbjct: 361 PTYYHQVLKFNLTESGLLCVLPWLTMAFSANLGGWIADTLVSRGLSVTTVRKIMQSIGFL 420
Query: 405 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV 464
GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV
Sbjct: 421 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV 480
Query: 465 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 481 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKILD 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434656|ref|XP_002279594.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Vitis vinifera] gi|297745933|emb|CBI15989.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/523 (79%), Positives = 443/523 (84%), Gaps = 20/523 (3%)
Query: 1 MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVS------- 53
M+ARA +S SP + S + + ++ P RL DR C FRVS
Sbjct: 1 MNARAYLFS---FSPDFHSLHSHKASSDF-PLPKKRLFRFRFQ-DRTCVFRVSGRNAGEF 55
Query: 54 ----VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLC 109
R++ V + VKF+EAL D+ L EDL E VPWWE+FPKRW IV+LC
Sbjct: 56 TGLARREIGKVFAEVKSEQVKFQEALDDVVLGEEDL----EGDVPWWEQFPKRWVIVILC 111
Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
FSAFLLCNMDRVNMSIAILPMSAEFNW+P TVGLIQSSFFWGYLLTQIAGGIWADTVGGK
Sbjct: 112 FSAFLLCNMDRVNMSIAILPMSAEFNWSPTTVGLIQSSFFWGYLLTQIAGGIWADTVGGK 171
Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
VLGFGVVWWSIAT LTP+AAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVPV+ERS
Sbjct: 172 LVLGFGVVWWSIATILTPIAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVPVSERS 231
Query: 230 RSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 289
RSLALVYSGMYLGSVTGLAFSPFLIH FGWPSVFYSFGSLGTVW WLSKA+SSP EDP
Sbjct: 232 RSLALVYSGMYLGSVTGLAFSPFLIHSFGWPSVFYSFGSLGTVWLATWLSKAYSSPLEDP 291
Query: 290 QLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN 349
+L P EKKLIVS+ +KEPVK IPW LILSKPPVWALI SHFCHNWGTFILLTWMPTYYN
Sbjct: 292 ELLPKEKKLIVSNSVTKEPVKKIPWRLILSKPPVWALIGSHFCHNWGTFILLTWMPTYYN 351
Query: 350 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF 409
QVL FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ+IGFLGPAFF
Sbjct: 352 QVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQTIGFLGPAFF 411
Query: 410 LTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVF 469
LTQLSHV+SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV
Sbjct: 412 LTQLSHVNSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVL 471
Query: 470 GTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
GT ATGYILQHGSWDDVFKVSVGLYLVGT +WNLFSTGEK++D
Sbjct: 472 GTGATGYILQHGSWDDVFKVSVGLYLVGTVIWNLFSTGEKILD 514
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054558|ref|XP_002298320.1| predicted protein [Populus trichocarpa] gi|222845578|gb|EEE83125.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/430 (91%), Positives = 411/430 (95%), Gaps = 2/430 (0%)
Query: 83 EDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVG 142
+D G+DS VPWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVG
Sbjct: 4 DDAGLDST--VPWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVG 61
Query: 143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV 202
LIQSSFFWGYLLTQIAGGIWADTVGGK VLGFGV+WWSIATALTPVAAK GLPFLLVVR
Sbjct: 62 LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATALTPVAAKAGLPFLLVVRA 121
Query: 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV 262
FMGIGEGVAMPAMN ILSKWVPV+ERSRSLALVYSGMYLGSVTGL FSPFLIH+FGWPSV
Sbjct: 122 FMGIGEGVAMPAMNTILSKWVPVSERSRSLALVYSGMYLGSVTGLGFSPFLIHQFGWPSV 181
Query: 263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP 322
FYSFGSLGTVWF WLSKAHSSP +DPQLRP EKKLI ++ +SKEPVK+IPWGLILSK P
Sbjct: 182 FYSFGSLGTVWFAAWLSKAHSSPLDDPQLRPEEKKLIFANSSSKEPVKSIPWGLILSKGP 241
Query: 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD 382
VWALIVSHFCHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMAFSANLGGWIAD
Sbjct: 242 VWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIAD 301
Query: 383 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYS 442
TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYS
Sbjct: 302 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYS 361
Query: 443 NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 502
NHQDIAPRYSGVLLGLSNTAGVLAGVFGTA+TGYILQHGSWDDVFKVSVGLYLVGT VWN
Sbjct: 362 NHQDIAPRYSGVLLGLSNTAGVLAGVFGTASTGYILQHGSWDDVFKVSVGLYLVGTVVWN 421
Query: 503 LFSTGEKVVD 512
LFSTGEK++D
Sbjct: 422 LFSTGEKILD 431
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539597|ref|XP_003538283.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/458 (85%), Positives = 422/458 (92%), Gaps = 5/458 (1%)
Query: 56 DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS-ESLVPWWEEFPKRWFIVVLCFSAFL 114
+VKSE N+SE S K+E+ + + + + G+D+ E WW+ FPKRW IVVLCFSAFL
Sbjct: 58 NVKSEK-NLSE-SPKYEDDV--VVQKKKKRGLDNVEEEARWWQVFPKRWVIVVLCFSAFL 113
Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
LCNMDRVNMSIAILPMSAE+NWNP+TVGLIQSSFFWGYLLTQIAGGIWADTVGGK VLGF
Sbjct: 114 LCNMDRVNMSIAILPMSAEYNWNPSTVGLIQSSFFWGYLLTQIAGGIWADTVGGKQVLGF 173
Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
GVVWWS+ATALTP+AAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPV+ERSRSLAL
Sbjct: 174 GVVWWSVATALTPIAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVSERSRSLAL 233
Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW +VWLSKAHSSP EDP+LRP
Sbjct: 234 VYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWCSVWLSKAHSSPLEDPELRPE 293
Query: 295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF 354
EKKLI ++C+SKEPVKTIPW LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL F
Sbjct: 294 EKKLITANCSSKEPVKTIPWRLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKF 353
Query: 355 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 414
NLTESGLFCVLPW MA SAN+GGWIADTLVSKGLSVT VRKIMQ+IGFLGPAFFLTQLS
Sbjct: 354 NLTESGLFCVLPWFIMAISANVGGWIADTLVSKGLSVTRVRKIMQTIGFLGPAFFLTQLS 413
Query: 415 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT 474
H +SP MAVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG+LLGLSNTAGVLAGVFGTAAT
Sbjct: 414 HANSPVMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVFGTAAT 473
Query: 475 GYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
GYILQHGSWDDVFKVSVGLYLVGT V+NLFSTGEK+++
Sbjct: 474 GYILQHGSWDDVFKVSVGLYLVGTVVFNLFSTGEKILE 511
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358346124|ref|XP_003637121.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355503056|gb|AES84259.1| Sodium-dependent phosphate transport protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/461 (83%), Positives = 414/461 (89%), Gaps = 5/461 (1%)
Query: 56 DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLV----PWWEEFPKRWFIVVLCFS 111
DVKSE + E S K+++ + S GVD E V WWE FPKRW IV+LCFS
Sbjct: 57 DVKSEKHG-PEASSKYQDLAVHKKVVSGLDGVDVEEEVTESSSWWEVFPKRWVIVILCFS 115
Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQV 175
Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235
Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295
Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
RP EKKLI ++ SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355
Query: 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411
L FNLTESGLFCVLPWLTMA SAN GGWIADTLV++G+SVT VRKIMQ++GFLGPAFFLT
Sbjct: 356 LKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLT 415
Query: 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGT 471
QLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG+LLGLSNTAGVLAGV GT
Sbjct: 416 QLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGT 475
Query: 472 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
AATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 476 AATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID 516
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500962|gb|AFK38547.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/461 (83%), Positives = 413/461 (89%), Gaps = 5/461 (1%)
Query: 56 DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLV----PWWEEFPKRWFIVVLCFS 111
DVKSE + E S K+++ + S VD E V WWE FPKRW IV+LCFS
Sbjct: 57 DVKSEKHG-PEASSKYQDLAVHKKVVSGLDSVDVEEEVTESSSWWEVFPKRWVIVILCFS 115
Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIW+DTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWSDTVGGKQV 175
Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235
Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295
Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
RP EKKLI ++ SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355
Query: 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411
L FNLTESGLFCVLPWLTMA SAN GGWIADTLV++G+SVT VRKIMQ++GFLGPAFFLT
Sbjct: 356 LKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLT 415
Query: 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGT 471
QLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG+LLGLSNTAGVLAGV GT
Sbjct: 416 QLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGT 475
Query: 472 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
AATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 476 AATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID 516
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826359|ref|XP_002881062.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata] gi|297326901|gb|EFH57321.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/524 (76%), Positives = 431/524 (82%), Gaps = 24/524 (4%)
Query: 1 MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSV 54
M+ARAL SP L S PP ++ R L+P L + + +R FRV V
Sbjct: 1 MNARALLCSPNLHSLYTSNRPPEKPTSSRSLRT-LKP-APNSLRVWIYPRNRSGVFRVLV 58
Query: 55 RDVK----SESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVL 108
R S SY V + V R+ + DS S +VPWWEEFPKRW IV+L
Sbjct: 59 RSSDKRESSNSYYVDGERVN----------RTNGVVSDSPSSIVVPWWEEFPKRWVIVLL 108
Query: 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
CFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG
Sbjct: 109 CFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
Query: 169 KAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER 228
K VLGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ER
Sbjct: 169 KRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQER 228
Query: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288
SRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP ED
Sbjct: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLED 288
Query: 289 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
P L P E+KLIV +CASKEPVK+IPW LILSKPPVWALI HFCHNWGTFILLTWMPTYY
Sbjct: 289 PTLLPEERKLIVDNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYY 348
Query: 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 408
+QVL FNL ESGL V PW+TMA SAN GGWIADTLVS+G SVT VRKIMQ+IGFLGPAF
Sbjct: 349 HQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAF 408
Query: 409 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 468
FLTQL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV
Sbjct: 409 FLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 468
Query: 469 FGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
GTAATG+ILQHGSWDDVF +SVGLYLVGT VWNLFSTGEK++D
Sbjct: 469 LGTAATGHILQHGSWDDVFTISVGLYLVGTVVWNLFSTGEKIID 512
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312281837|dbj|BAJ33784.1| unnamed protein product [Thellungiella halophila] gi|312281881|dbj|BAJ33806.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/522 (75%), Positives = 425/522 (81%), Gaps = 22/522 (4%)
Query: 1 MSARALFYSPILQS------PPYISARN----KLSRAELRPRGLPRLLLGVLSGDRVCSF 50
M+ARAL SP L S PP S+RN K LR PR +R F
Sbjct: 1 MNARALLCSPNLHSLYTSNRPPETSSRNRRILKSDPKSLRVWIYPR--------NRSAVF 52
Query: 51 RVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCF 110
RV VR S V + K+I R+ + DS S +PWW+EFPKRW IV+LCF
Sbjct: 53 RVLVRSSDKGEIGNSNAEVYVD---KEIVTRN-GVASDSLSSLPWWKEFPKRWVIVLLCF 108
Query: 111 SAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA 170
SAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK
Sbjct: 109 SAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKM 168
Query: 171 VLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSR 230
VLGFGV+WWSIAT LTP+AAKLGLPFLLVVR FMG+GEGVAMPAMNN+LSKWVPV ERSR
Sbjct: 169 VLGFGVIWWSIATILTPIAAKLGLPFLLVVRAFMGVGEGVAMPAMNNLLSKWVPVQERSR 228
Query: 231 SLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 290
SLALVYSGMY+GSV GLAFSPFLIH+FGWPSVFY FGSLGTVW T+WL+KA SSP ED
Sbjct: 229 SLALVYSGMYIGSVIGLAFSPFLIHQFGWPSVFYCFGSLGTVWLTLWLTKAESSPVEDLT 288
Query: 291 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ 350
L P E+KLI +CASKEPVK+IPW LILSKPPVWALI HFCHNWGTFILLTWMPTYY+Q
Sbjct: 289 LLPQERKLIADNCASKEPVKSIPWRLILSKPPVWALICCHFCHNWGTFILLTWMPTYYHQ 348
Query: 351 VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL 410
VL FNL ESGL V PWLTMA SAN GGWIADTLVS+G SVT VRKIMQ+IGFLGPAFFL
Sbjct: 349 VLKFNLMESGLLSVFPWLTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFL 408
Query: 411 TQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG 470
TQL H+DSP MAVLCMACSQG DAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV G
Sbjct: 409 TQLKHIDSPTMAVLCMACSQGLDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLG 468
Query: 471 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
TAATG+ILQHGSWDDVF +SVGLYLVGT VWNLFSTGEK++D
Sbjct: 469 TAATGHILQHGSWDDVFTISVGLYLVGTVVWNLFSTGEKIID 510
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| TAIR|locus:2060694 | 512 | PHT4;1 "AT2G29650" [Arabidopsi | 0.900 | 0.900 | 0.817 | 4e-209 | |
| TAIR|locus:2126066 | 541 | ANTR2 "AT4G00370" [Arabidopsis | 0.914 | 0.865 | 0.763 | 2.5e-200 | |
| TAIR|locus:2065615 | 512 | PHT4;2 "AT2G38060" [Arabidopsi | 0.826 | 0.826 | 0.414 | 9.6e-89 | |
| TAIR|locus:2149199 | 517 | PHT4;5 "phosphate transporter | 0.802 | 0.794 | 0.416 | 1.8e-87 | |
| UNIPROTKB|Q9NRA2 | 495 | SLC17A5 "Sialin" [Homo sapiens | 0.734 | 0.759 | 0.376 | 1.4e-74 | |
| UNIPROTKB|Q5ZL94 | 484 | SLC17A5 "Uncharacterized prote | 0.734 | 0.776 | 0.379 | 3.7e-74 | |
| MGI|MGI:1924105 | 495 | Slc17a5 "solute carrier family | 0.734 | 0.759 | 0.379 | 2e-73 | |
| UNIPROTKB|E2R8R4 | 495 | SLC17A5 "Uncharacterized prote | 0.732 | 0.757 | 0.370 | 3.2e-73 | |
| UNIPROTKB|E1B7R3 | 495 | SLC17A5 "Uncharacterized prote | 0.734 | 0.759 | 0.369 | 2.3e-72 | |
| RGD|1311388 | 495 | Slc17a5 "solute carrier family | 0.734 | 0.759 | 0.371 | 6e-72 |
| TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2022 (716.8 bits), Expect = 4.0e-209, P = 4.0e-209
Identities = 385/471 (81%), Positives = 411/471 (87%)
Query: 45 DRVCSFRVSVRDV-KSESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPK 101
+R FRV VR KSES N S E D + D+ DS S ++PWWEEFPK
Sbjct: 49 NRSSVFRVLVRSSDKSESSN----SYYVEG---DKVSGNNDVVSDSPSSIVLPWWEEFPK 101
Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
RW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGI
Sbjct: 102 RWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGI 161
Query: 162 WADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK 221
WADTVGGK VLGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSK
Sbjct: 162 WADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSK 221
Query: 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281
WVPV ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA
Sbjct: 222 WVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKA 281
Query: 282 HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341
SSP EDP L P E+KLI +CASKEPVK+IPW LILSKPPVWALI HFCHNWGTFILL
Sbjct: 282 ESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILL 341
Query: 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 401
TWMPTYY+QVL FNL ESGL V PW+TMA SAN GGWIADTLVS+G SVT VRKIMQ+I
Sbjct: 342 TWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTI 401
Query: 402 GFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNT 461
GFLGPAFFLTQL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNT
Sbjct: 402 GFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNT 461
Query: 462 AGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
AGVLAGV GTAATG+ILQHGSWDDVF +SVGLYLVGT +WNLFSTGEK++D
Sbjct: 462 AGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWNLFSTGEKIID 512
|
|
| TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1939 (687.6 bits), Expect = 2.5e-200, P = 2.5e-200
Identities = 359/470 (76%), Positives = 405/470 (86%)
Query: 45 DRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS--ESLVPWWEEFPKR 102
D V FR S++ +S +Y SE+S E + +E + V+ ++ PWW++FP+R
Sbjct: 72 DSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGSAEAILVEGNLQNASPWWQQFPRR 131
Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
W IV+LCFS+FLLCNMDRVNMSIAILPMS E+NW+ ATVGLIQSSFFWGYLLTQI GGIW
Sbjct: 132 WVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIW 191
Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
AD GGK VLGFGVVWWS AT +TP+AA+LGLPFLLVVR FMGIGEGVAMPAMNN+LSKW
Sbjct: 192 ADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKW 251
Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282
+PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG++WF +WL A+
Sbjct: 252 IPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAY 311
Query: 283 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342
SSP +DP L EKK+I+ +EPV IPW LILSKPPVWALI+SHFCHNWGTFILLT
Sbjct: 312 SSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLT 371
Query: 343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402
WMPTYYNQVL FNLTESGL CVLPWLTMA AN+GGWIADTLVS+GLS+T VRKIMQSIG
Sbjct: 372 WMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIG 431
Query: 403 FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTA 462
FLGPAFFL+QLSHV +PAMAVLCMACSQG+DAFSQSGLYSNHQDI PRY+GVLLGLSNTA
Sbjct: 432 FLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTA 491
Query: 463 GVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 512
GVLAGVFGTAATGYILQ GSWDDVFKV+V LYL+GT VWNLF+TGEK++D
Sbjct: 492 GVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFATGEKILD 541
|
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| TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 179/432 (41%), Positives = 258/432 (59%)
Query: 86 GVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQ 145
G SE++ P+R +V+L LCN DRV MS+A++P++ + W+ + +G++Q
Sbjct: 82 GGGSEAIAEVRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQ 141
Query: 146 SSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG 205
SSF WGY+ + + GG D GGK VL +GV WS+AT LTP AA LL VR F G
Sbjct: 142 SSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFG 201
Query: 206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS 265
+ EGVAMP+M +LS+W P+ ER+ ++ + +G ++G+V GL +P ++ G F
Sbjct: 202 LAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFIL 261
Query: 266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS------SCASKEPVKTIPWGLILS 319
F SLG +W + W S ++P + P + +E +LI + S S +P ++ L+LS
Sbjct: 262 FASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLR--LLLS 319
Query: 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGW 379
K P WA+I ++ +NWG F+LL+WMP Y+ V + NL ++ F LPW TMA S G
Sbjct: 320 KLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGA 379
Query: 380 IADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSG 439
+D L+ G SVT+VRKIMQSIGF+GP L L+ SP+ A + M + +FSQ+G
Sbjct: 380 ASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAG 439
Query: 440 LYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGT 498
N QDIAP+Y+G L G+SN AG LA + T TGY +Q GS+ V+ LY T
Sbjct: 440 FLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATT 499
Query: 499 AVWNLFSTGEKV 510
W LF+TGE+V
Sbjct: 500 VFWLLFATGERV 511
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| TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 176/423 (41%), Positives = 255/423 (60%)
Query: 94 PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
P W+ P+R+ ++ AF++CNMD+VN+SIAI+PMS +F W+ + GL+QSSFFWGY
Sbjct: 90 PPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYA 149
Query: 154 LTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM 212
L+Q+ GG W + GG+ VL GV WS ATAL P+ A +P L+ R+ +GIGEGV+
Sbjct: 150 LSQLPGG-WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSP 207
Query: 213 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272
A +++++ +PV ERSR++ V+ G+ LGSV GL +P +I F W SVFY FG LG
Sbjct: 208 SAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVG 267
Query: 273 WFT--VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSH 330
WF +L++ S + ++ + K + +K IPW P VWA+I +H
Sbjct: 268 WFVGFQFLNEEEVS-YKGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTH 326
Query: 331 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLS 390
FC +WG + L+W+PTY+++ L NLTE+ +LP L +L AD L++ G+
Sbjct: 327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386
Query: 391 VTTVRKIMQSIGFLGPAFFLTQLSHVD---SPAMAVLCMACSQGTDAFSQSGLYSNHQDI 447
TTVRKI Q+I F+ PA +T LS VD P V + +F+ SGLY HQDI
Sbjct: 387 TTTVRKICQTIAFVAPAICMT-LSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDI 445
Query: 448 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-SWD-DVFKVSVGLYLVGTAVWNLFS 505
+P Y+ +LLG++NT G + G+ G A TG++L SW +F S+ YL GT VW F+
Sbjct: 446 SPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFA 505
Query: 506 TGE 508
+ E
Sbjct: 506 SSE 508
|
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| UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 144/382 (37%), Positives = 216/382 (56%)
Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
++ W+ T G I SFF+GY++TQI GG A +GGK +LGFG++ ++ T TP+AA L
Sbjct: 100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADL 159
Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
G+ L+V+R G+GEGV PAM+ + S W P ERS+ L++ Y+G LG+V L S
Sbjct: 160 GVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219
Query: 253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
+ + W VFY FG++G WF +W+ +P + ++ EK+ I+SS ++ K+
Sbjct: 220 ICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQKS 279
Query: 312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 371
+PW IL P+WA++V+HF +NW + LLT +PTY ++L FN+ E+G LP+L
Sbjct: 280 VPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSW 339
Query: 372 FSANLGGWIADTLVSK-GLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACS 429
L G AD L +K S VR+I IG +GPA FL + ++AV + S
Sbjct: 340 LCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCDYSLAVAFLTIS 399
Query: 430 QGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDV 486
F SG NH DIAP Y+G+LLG++NT + G+ G + G W V
Sbjct: 400 TTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTVGEWQTV 459
Query: 487 FKVSVGLYLVGTAVWNLFSTGE 508
F ++ + + G + LF+ GE
Sbjct: 460 FYIAAAINVFGAIFFTLFAKGE 481
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| UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 145/382 (37%), Positives = 213/382 (55%)
Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
+++W+ T G I SFF+GY++TQI GG A +GGK +LGFG+ S+ T LTP+AA L
Sbjct: 89 KYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADL 148
Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
G+ +L+ VR G+GEGV PAM+++ S W P ERS+ L++ Y+G LG+V L S
Sbjct: 149 GVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGL 208
Query: 253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
+ + W VFY FG+LG +WF W+ P + E++ I+SS + K+
Sbjct: 209 ICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQKS 268
Query: 312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 371
+PW IL P+WA++V+HF +NW + LLT +PTY ++L F+ E+G LP+
Sbjct: 269 VPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYFGCW 328
Query: 372 FSANLGGWIADTLVSK-GLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVLCMACS 429
L G IAD L K S VRK IG +GPA FL + + +AV + S
Sbjct: 329 LCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFVTIS 388
Query: 430 QGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDV 486
F SG NH DIAP Y+G+LLG++N+ + G+ G + + G W V
Sbjct: 389 TTLGGFCTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPVIAKNLTHNNTVGEWQTV 448
Query: 487 FKVSVGLYLVGTAVWNLFSTGE 508
F ++ + L G + LF++GE
Sbjct: 449 FYIAASINLFGAIFFALFASGE 470
|
|
| MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 145/382 (37%), Positives = 212/382 (55%)
Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
++ W+ T G I SFF+GY++TQI GG A VGGK +LG G++ S+ T TP+AA L
Sbjct: 100 KYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADL 159
Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
G+ L+V+R G+GEGV PAM+ + S W P ERS+ L + Y+G LG+V L S
Sbjct: 160 GVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219
Query: 253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
+ + W VFY FG +G VWF +W+ +P + EK+ IVSS ++ K
Sbjct: 220 ICYYMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQLSSQKV 279
Query: 312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 371
+PWG IL P+WA++V+HF +NW + LLT +PTY ++L FN+ E+G LP+
Sbjct: 280 VPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCW 339
Query: 372 FSANLGGWIADTL-VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACS 429
L G AD L V S +VR+I +G +GPA FL + ++AV + S
Sbjct: 340 LCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYSLAVAFLTIS 399
Query: 430 QGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS---WDDV 486
F+ SG NH DIAP Y+G+LLG++NT + G+ G + + W V
Sbjct: 400 TTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMTGPIIAKSLTPDNTIREWQTV 459
Query: 487 FKVSVGLYLVGTAVWNLFSTGE 508
F ++ + + G + LF+ GE
Sbjct: 460 FCIAAAINVFGAIFFTLFAKGE 481
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| UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 141/381 (37%), Positives = 213/381 (55%)
Query: 134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG 193
+ W+ T G I SFF+GY++TQI GG A VGGK +LGFG++ ++ T TP+AA G
Sbjct: 101 YQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADFG 160
Query: 194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253
+ L+V+R G+GEGV PAM+ + S W P ERS+ L++ Y+G LG+V L S +
Sbjct: 161 VGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGII 220
Query: 254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTI 312
W VFY FG +G +WF +W+ +P + EK+ I+SS ++ K++
Sbjct: 221 CFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSSLKNQLSSQKSV 280
Query: 313 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 372
PW +L P+WA++V+HF +NW + LLT +PTY ++L FN+ E+GL LP+
Sbjct: 281 PWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFGCWL 340
Query: 373 SANLGGWIADTLVSK-GLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACSQ 430
L G AD L +K S VR++ IG +GPA FL + ++AV+ + S
Sbjct: 341 CMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLTIST 400
Query: 431 GTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS---WDDVF 487
F SG NH DIAP Y+G+LLG++NT + G+ G + + W VF
Sbjct: 401 TLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTIREWQTVF 460
Query: 488 KVSVGLYLVGTAVWNLFSTGE 508
++ + + G ++LF+ GE
Sbjct: 461 YIAAAINVFGAIFFSLFAKGE 481
|
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| UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 141/382 (36%), Positives = 211/382 (55%)
Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
++ W+ T G I SFF+GY++TQI GG A GGK +LGFGV+ ++ T TP+AA
Sbjct: 100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADF 159
Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
G L+ +R G+GEGV PAM+ + S W P ERS+ L++ Y+G LG+V L S
Sbjct: 160 GFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219
Query: 253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
+ + W VFY FG +G +WF +W+ +P + P EK+ I+SS ++ K+
Sbjct: 220 ICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQLSSQKS 279
Query: 312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 371
+PW +L P+WA++V+HF +NW + LLT +PTY +VL FN+ E+G +P+L
Sbjct: 280 VPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCW 339
Query: 372 FSANLGGWIADTLVSK-GLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACS 429
L G AD L ++ S VR++ IG +GPA FL + ++AV + S
Sbjct: 340 LCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTIS 399
Query: 430 QGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDV 486
F SG NH DIAP Y+G+LLG++NT + G+ G + G W V
Sbjct: 400 TTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIARSLTPENTIGEWQTV 459
Query: 487 FKVSVGLYLVGTAVWNLFSTGE 508
F ++ + + G + LF+ GE
Sbjct: 460 FCIAAAINVFGAIFFTLFAKGE 481
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| RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 142/382 (37%), Positives = 211/382 (55%)
Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
++ W+ T G I SFF+GY++TQI GG A +GGK +LG G++ ++ T TP+AA L
Sbjct: 100 KYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADL 159
Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
G+ L+V+R G+GEGV PAM+ + S W P ERS+ L + Y+G LG+V L S
Sbjct: 160 GVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219
Query: 253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
+ + W VFY FG +G VWF +W+ +P + EK+ IVSS ++ K
Sbjct: 220 ICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQLSSQKV 279
Query: 312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 371
+PW IL P+WA++V+HF +NW + LLT +PTY ++L FN+ E+G LP+
Sbjct: 280 VPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCW 339
Query: 372 FSANLGGWIADTL-VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACS 429
+ G AD L V S +VR+I IG +GPA FL + ++AV + S
Sbjct: 340 LCMIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYSLAVAFLTIS 399
Query: 430 QGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS---WDDV 486
F+ SG NH DIAP Y+G+LLG++NT + G+ G + + W V
Sbjct: 400 TTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIAKSLTPDNTIKEWQTV 459
Query: 487 FKVSVGLYLVGTAVWNLFSTGE 508
F ++ + + G + LF+ GE
Sbjct: 460 FCIAAAINVFGAIFFTLFAKGE 481
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9NRA2 | S17A5_HUMAN | No assigned EC number | 0.3375 | 0.8476 | 0.8767 | yes | no |
| Q8GX78 | ANTR2_ARATH | No assigned EC number | 0.7638 | 0.9140 | 0.8650 | no | no |
| Q652N5 | PHT44_ORYSJ | No assigned EC number | 0.7479 | 0.9238 | 0.8003 | no | no |
| Q9SDI4 | PHT41_ORYSJ | No assigned EC number | 0.8939 | 0.8105 | 0.7844 | yes | no |
| O82390 | ANTR1_ARATH | No assigned EC number | 0.7543 | 0.9824 | 0.9824 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024146001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (514 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 512 | |||
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 1e-68 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 7e-46 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-44 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-42 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-22 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 3e-20 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 4e-14 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 2e-12 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-12 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-08 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 2e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-07 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 2e-06 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 4e-05 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 6e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 5e-04 | |
| PRK05122 | 399 | PRK05122, PRK05122, major facilitator superfamily | 0.004 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 1e-68
Identities = 122/384 (31%), Positives = 186/384 (48%), Gaps = 8/384 (2%)
Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
F W+ A GLI SS F+G ++ QI G A K +G G+ S+ + + P AA
Sbjct: 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG 129
Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
G+ ++ RV G+ +G PA + I+ KW P ERSR L + SG LG+ L S +
Sbjct: 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGW 189
Query: 253 LI-HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPV- 309
L GWP +FY FG +G W +W P+ P + EKK I SS K
Sbjct: 190 LCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTR 249
Query: 310 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT 369
+++P I PVWA+ + F H W IL T++PT+ + VL + E+GL LP+L
Sbjct: 250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309
Query: 370 MAFSANLGGWIADTLVSKG-LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC 428
+ G++AD L S LS+T RKI IG LGP F L ++ + + +
Sbjct: 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369
Query: 429 -SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS---WD 484
+ + +G+ N D+APR+ G + G++ G + G+ + G IL S W
Sbjct: 370 LANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWL 429
Query: 485 DVFKVSVGLYLVGTAVWNLFSTGE 508
VF + + ++ + +F + E
Sbjct: 430 IVFLIMAFVNILCVIFYLIFGSAE 453
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 7e-46
Identities = 104/395 (26%), Positives = 169/395 (42%), Gaps = 12/395 (3%)
Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
++ +DR N+S A + + + A G + S+F WGY++ Q GG D G +
Sbjct: 2 VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT 61
Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
L +V W + T L A L ++RV +G E P + I++ W P +ER+ +
Sbjct: 62 LAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119
Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
+++ S LG + G +++ F W F G LG +W +WL P + L
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL 179
Query: 292 RPAEKKLIV----SSCASKEPVKTIPWGL--ILSKPPVWALIVSHFCHNWGTFILLTWMP 345
EK ++V + K P + + +L VW L + F N G LTW P
Sbjct: 180 TEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFP 239
Query: 346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 405
TY Q ++ E+G LP + LGG ++D L+ +G S+ + I L
Sbjct: 240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL-VFARKTAIIAGLV 298
Query: 406 PAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS-GVLLGLSNTAGV 464
+ + ++V+ P A+ +A + ++ D AP G+ GL N+ G
Sbjct: 299 LSLLMFATNYVNIPYAALALVALGFFGLGAG-AIGWALISDNAPGNIAGLTGGLINSLGN 357
Query: 465 LAGVFGTAATGYIL-QHGSWDDVFKVSVGLYLVGT 498
L G+ G G I GS+ V L L+G
Sbjct: 358 LGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 5e-44
Identities = 97/365 (26%), Positives = 155/365 (42%), Gaps = 20/365 (5%)
Query: 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG 167
L +AFL + L ++ + +P +GL+ ++F GY L Q G +D G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 168 GKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE 227
+ VL G++ +++ L A+ L LLV+RV G+G G PA +++ W P E
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118
Query: 228 RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
R R+L L+ +G LG+ G L FGW + F L + + P E
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178
Query: 288 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 347
+ +PAE+ P +P +L + PV L+++ + F LLT++P
Sbjct: 179 SKRPKPAEEA----------PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL- 227
Query: 348 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA 407
Y +VL + +GL L L A L G ++D L + R ++ + + A
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR------RRLLLALLLLILAA 281
Query: 408 FFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLA 466
L LS +S ++ + L + D+AP G GL NTAG L
Sbjct: 282 LGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLG 341
Query: 467 GVFGT 471
G G
Sbjct: 342 GALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 7e-42
Identities = 103/400 (25%), Positives = 166/400 (41%), Gaps = 50/400 (12%)
Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
++L F F L +DR +S A+ ++ + + + GLI S+F GY L + G +D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 166 VGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV 225
G + VL G++ +++ + L A L LLV R +G+G G PA ++++W P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 226 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285
ER R+L L +G LG++ G L GW +F LG + + L
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL------- 171
Query: 286 AEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 345
+ L ++ F ++G + LLT++P
Sbjct: 172 --------------------------------FLLRLLLLLALAFFLLSFGYYGLLTYLP 199
Query: 346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 405
Y +VL + E+GL L L A LGG ++D L R+++ IG L
Sbjct: 200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--------RRLLLLIGLLL 251
Query: 406 PAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGV 464
A L L+ S A+ ++ + F+ L + ++AP G GL NT G
Sbjct: 252 AALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS 311
Query: 465 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 504
L G G G +L G + VF + L L+ + L
Sbjct: 312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 93/401 (23%), Positives = 166/401 (41%), Gaps = 37/401 (9%)
Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
+W ++L F L+ D M A +SAE+ +P +G + S+ G +
Sbjct: 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFF 72
Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
G AD +G + VL + ++ +S+ T L +A + LL++R G+G G MP +N ++
Sbjct: 73 GPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALV 130
Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
S++ P R ++ L++ G +G+ G + +LI FGW S+FY G + + + L
Sbjct: 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAPLLLLLLLM 189
Query: 280 KAHSSPAEDPQLRPAEKKL-IVSSCA---------------SKEPVKTIPWGLILSKPPV 323
+ + + E IV++ A + + K + +
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249
Query: 324 WA---LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWI 380
L + +F G + L W+P + L F+L+ + L + + GW+
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWL 308
Query: 381 ADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL 440
AD L ++ + LG F + S + SP + +L A + QSGL
Sbjct: 309 ADRL---------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGL 359
Query: 441 YSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAATGYIL 478
Y+ P R +GV + G L + G GY+L
Sbjct: 360 YALMALFYPTAIRATGVGWAIG--IGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 70/388 (18%), Positives = 136/388 (35%), Gaps = 19/388 (4%)
Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
F + + R N ++A+ + E + +GL+ SSF Y +++ G +D +
Sbjct: 1 FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60
Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
L G++ +I L + + GI +G+ P ++KW +ER
Sbjct: 61 VFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118
Query: 230 RSLALVYSGMYLGS--VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
++ +G + L + W VF G + + + SP +
Sbjct: 119 TWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVSLICFLLLRDSP-Q 176
Query: 288 DPQLRPAEKKLI--VSSCASKEPVKTIPWGL----ILSKPPVWALIVSHFCHNWGTFILL 341
L PAE+ A K+ + + +L +W + + + +L
Sbjct: 177 SCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL 236
Query: 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV-SKGLSVTTVRKIMQS 400
W P Y Q F+ ++ L L L GW++D L + + +
Sbjct: 237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296
Query: 401 IGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLS 459
+ L ++L + +P M ++C+ Q + ++AP + +G G
Sbjct: 297 VSLLV--YWLNPAA---NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFV 351
Query: 460 NTAGVLAGVFGTAATGYILQHGSWDDVF 487
L G+ GY+ W F
Sbjct: 352 GFFAYLGGILAGLPLGYLADGFGWAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 87/444 (19%), Positives = 152/444 (34%), Gaps = 58/444 (13%)
Query: 101 KRWFIVVLC-----FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLT 155
KRW I + ++AF L R N ++A+ + + + +G++ S+F Y ++
Sbjct: 24 KRWRIQIFLSIFIGYAAFYLT---RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVS 80
Query: 156 QIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMP 213
+ G+ +D + + FG+ I +A+ + L V+ V G +G+ P
Sbjct: 81 KFVMGVLSDRSNPRYFMAFGL----ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWP 136
Query: 214 AMNNILSKWVPVAERSRSLALV-----YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
++ W ER ++ G V LA F GW + FY G
Sbjct: 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA---FFAFHGGWRAAFYFPGI 193
Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEK---KLIVSSCASKE----PVKTIPWGLILSKP 321
+ + + L + L P E+ + KE I +L
Sbjct: 194 IAII-VALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK 252
Query: 322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF------SAN 375
+W L +++ + + W P Y ++V F+L ++ W F
Sbjct: 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN------WAISLFEVAGLPGTL 306
Query: 376 LGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVDSPAMAVLCMACSQGTD 433
L GW++D + KG R M I L L L+ S + + + G
Sbjct: 307 LAGWLSD-KLFKGR-----RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII-GFL 359
Query: 434 AFSQ---SGLYSNHQDIAPRYS-GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFK 488
+ GL + + P+ + G G L G GYI WD F
Sbjct: 360 IYGPQMLIGLAAA--EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFI 417
Query: 489 VSVGLYLVGTAVWNLFSTGEKVVD 512
V L+ + E+
Sbjct: 418 VLSIAALLAILLLLPVWNAEERKI 441
|
Length = 448 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 88/409 (21%), Positives = 149/409 (36%), Gaps = 28/409 (6%)
Query: 96 WEEFPKR--WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
WE KR + L AF + M S + + ++F + GL+ +
Sbjct: 4 WEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGA 63
Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL-GLPFLLVVRVFMGIGEGVAM 212
L ++ G D GG+ ++ I A LLV+ + +G+
Sbjct: 64 LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFA 123
Query: 213 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272
M N S + P ++ +L + +G +V L +P + FG+ + G V
Sbjct: 124 VGMPNA-SFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNVAGIYV-V 180
Query: 273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC 332
+ A + P+ R S +P + S W L + +F
Sbjct: 181 ALAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWLLSLLYFA 229
Query: 333 HNWGTFILLT-WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 391
+G F+ + ++P Y + +GL L L A + LGGW++D + G V
Sbjct: 230 -TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRRV 286
Query: 392 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ---DIA 448
T + ++ + FLT H S + V F+ G S + I
Sbjct: 287 TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL---ALFVFAGLGNGSVFKMIPVIF 343
Query: 449 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLV 496
P+ +G + G+ G L G F A G L GS+ F + + YLV
Sbjct: 344 PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLV 392
|
Length = 417 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 3e-12
Identities = 74/384 (19%), Positives = 142/384 (36%), Gaps = 30/384 (7%)
Query: 123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181
+ + +LP ++A+ + G + +++ G L + + + +L + + +
Sbjct: 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90
Query: 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL 241
+ L+ +A LL+ R G+ GV + ++ VP +R R+LALV++G+ L
Sbjct: 91 SNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL 148
Query: 242 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS 301
+V G+ FL FGW + F + L + L P + +
Sbjct: 149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALL---ALLLLWKLLPPSEISGSLPGPLRTLL 205
Query: 302 SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL 361
+L +P V +++ F G F L T++ + V F+++ L
Sbjct: 206 R--------------LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL 251
Query: 362 FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM 421
+ + LGG +AD + L + LT SPA+
Sbjct: 252 VLLAFGIAGFIGNLLGGRLADRGPRRALIAAL-------LLLALALLALTFTGA--SPAL 302
Query: 422 AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG 481
A+ + + + GL + +AP + + L+ A L G A G +L
Sbjct: 303 ALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL 362
Query: 482 SWDDVFKVSVGLYLVGTAVWNLFS 505
+ V L+ + L S
Sbjct: 363 GYAATGWVG-AALLLLALLLALLS 385
|
Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
+ LCF LL +D + +A M+ EF + A +G S+ G L + GG AD
Sbjct: 17 IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR 76
Query: 166 VGGKAVLGFGVVWW---SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
+G K +L V + S+ATA P LLV R+ G+G G A+P + + S+
Sbjct: 77 IGRKRILIVSVALFGLFSLATAQAW-----DFPSLLVARLLTGVGLGGALPNLIALTSEA 131
Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264
V R +++L+Y G+ G W +FY
Sbjct: 132 VGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY 173
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 5/181 (2%)
Query: 99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
+ ++ L F ++ L + + A GL+ S F G +L +
Sbjct: 173 LLRLLLLLALAFFLLSFGYY--GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALL 230
Query: 159 GGIWADTVGGK-AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
GG+ +D +G + +L G++ ++ L +A L L + ++ +G G G A PA+
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL--LLGFGLGFAFPALLT 288
Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
+ S+ P R + L + LG G + L+ G+ VF +L + +
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
Query: 278 L 278
L
Sbjct: 349 L 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
+++ F F+ +DR+N+ A L M + + GL + F+ Y++ I I
Sbjct: 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA 68
Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
+G + + +V W IA+ T A G L ++R+ +GI E +P + L+ W P
Sbjct: 69 IIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126
Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
R+R+ AL M + GL S +++
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYIL 156
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR 201
GL+ + + G L+ G+ D G K VL G+ + ++TA+ +++ + + L++ R
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV--LIIAR 58
Query: 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261
G G A+ A +++ P ER +L L+ +G+ LG + G L GW +
Sbjct: 59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118
Query: 262 VFYSFGSLGTVWF 274
F L F
Sbjct: 119 PFLFLAILALAAF 131
|
Length = 141 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 76/392 (19%), Positives = 131/392 (33%), Gaps = 30/392 (7%)
Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
RW+ V++ + ++ P+ F V + + G ++ GG+
Sbjct: 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGL 60
Query: 162 WADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK 221
AD G +AV G + + + +A L L + G G+A N K
Sbjct: 61 LADKFGPRAVAMLGGILYGLGFTFYAIAD--SLAALYLTYGLASAGVGIAYGIALNTAVK 118
Query: 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPF---LIHRFGWPSVFYSFGSLGTVWFTVWL 278
W P +R + ++ G LGS SP +I+ G P+ F G + + V
Sbjct: 119 WFP-DKRGLASGIIIGGYGLGS---FILSPLITSVINLEGVPAAFIYMGIIFLL-VIVLG 173
Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN-WGT 337
+ P QL ++ V E ++T + W L +S F + G
Sbjct: 174 AFLIGYP--PGQLIKTNIEVSVKDYTVWEMLRTPQF---------WVLYLSFFLNAVSGL 222
Query: 338 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 397
++ + P Y Q L + L + + G ++D + I
Sbjct: 223 LLIGLYKP--YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-----GRQKTMSI 275
Query: 398 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLG 457
+ I +G A L D +A + + S P S G
Sbjct: 276 VFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF-PSLVSDIFGPANSAANYG 334
Query: 458 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKV 489
TA +AG+FG + L ++ F V
Sbjct: 335 FLYTAKAVAGIFGGLIASHALTEIGFEYTFIV 366
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 70/370 (18%), Positives = 123/370 (33%), Gaps = 57/370 (15%)
Query: 134 FNWNPATVGLIQSSF-------FWGYLLTQIAG-------GIWADTVGGKAVLGFGVVWW 179
F ++P V +I+ + +AG G D G + ++
Sbjct: 18 FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLL 77
Query: 180 SIATALTPVAAKLGLPF--LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS 237
+I +A + LL++R+F+GI G M I S + P + +L L
Sbjct: 78 AIPCLWAGLA---VQSYSVLLLLRLFIGIAGGSFASCMPWI-SFFFPKKIQGTALGLAAG 133
Query: 238 GMYLGSVTGLAFSPFLI------------HRFGWPSVFYSFGSL---GTVWFTVWLSKAH 282
+G P +I +GW V G L + F V
Sbjct: 134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG----- 188
Query: 283 SSPAEDPQLRPAEKKL-IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341
A+ P +PA KL + S + W L + + +G+F+ +
Sbjct: 189 ---ADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSV-TFGSFLGV 244
Query: 342 TWM-PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400
+ + ++ + +G + L L + + LGG I+D L + + +
Sbjct: 245 SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMG 304
Query: 401 IGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA---PRYSGVLLG 457
L +S + VL +A FS +G S + R +G + G
Sbjct: 305 AF----LVVLGLVSPLSLAVFIVLFVALF----FFSGAGNGSTFALVPHIFRRATGAVSG 356
Query: 458 LSNTAGVLAG 467
L G L G
Sbjct: 357 LVGAIGNLGG 366
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 27/327 (8%)
Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIG-EGVAMPAMNNI 218
G+ AD G K ++ + +V +S+ T L+ +A+ G+ L + R +G+G G A
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131
Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
+ W P +S++ A + SG +G++ F P +GW + F F L V +++
Sbjct: 132 VESW-PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF--FVGLLPVLLVIYI 188
Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP------VWALIVSHFC 332
E + A+ S V ++ + ++ V+ ++ S F
Sbjct: 189 RA---RAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245
Query: 333 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK--GLS 390
NW F LL PTY L ++G+ L +T A + G I L + GL
Sbjct: 246 ANWPIFGLL---PTY----LAGEGFDTGVVSNL--MTAAAFGTVLGNIVWGLCADRIGLK 296
Query: 391 VTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAP 449
T ++ S F+ P F + Q +++ A MA + G LY ++
Sbjct: 297 KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG 356
Query: 450 RYSGVLLGLSNTAGVLAGVFGTAATGY 476
+G++ L+ T+G + T
Sbjct: 357 LGTGLIYNLAATSGTFNSMAATWLGIT 383
|
Length = 426 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 10/180 (5%)
Query: 326 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 385
L ++ F G +L +P Y + L + TE GL L A + L G ++D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 386 SKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ 445
R+ + IG L A L L S + ++ +
Sbjct: 61 ---------RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIA 111
Query: 446 DIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 504
D P G LGL + L G G + W F + L L+ + L
Sbjct: 112 DWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
|
Length = 346 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (97), Expect = 5e-04
Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 16/326 (4%)
Query: 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWA 163
+ + + L ++ ++ ++ +L + + GL+ S+FF GY + + G
Sbjct: 4 LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63
Query: 164 DTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV 223
D G + VL G++ + + T L +A +GL LL++R+ G+G G +P + +LS+W
Sbjct: 64 DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123
Query: 224 PVAERSRSLALVYS--GMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVWLS 279
P A + + LG G + L+ GW + F LG + + L
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183
Query: 280 ------------KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALI 327
+ E +L L++ + + + L
Sbjct: 184 LDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLG 243
Query: 328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 387
++ G ILL +P + +L + + + LG + +L+
Sbjct: 244 LALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVD 303
Query: 388 GLSVTTVRKIMQSIGFLGPAFFLTQL 413
L + + + G L A L L
Sbjct: 304 RLGRSLGLRAILLAGALLLAILLLVL 329
|
Length = 338 |
| >gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 105 IVVLCFSAFLLCNMDRVNMSIAILP--MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
IV+ F ++L + + +A+LP + + ++ GL+ S + LL++ G +
Sbjct: 20 IVMFTFISYL-----TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRY 74
Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAA------KLGLPFLLVVRVFMGIGEGVA 211
ADT+G K + FG+ +++ L +A L L LL+ R+ +GIGE +A
Sbjct: 75 ADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129
|
Length = 399 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 100.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.92 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.92 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.91 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.91 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.91 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.9 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.88 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.88 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.86 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.83 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.82 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.79 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.75 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.71 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.71 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.62 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.62 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.57 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.57 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.55 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.55 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.55 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.54 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.53 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.53 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.53 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.52 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.52 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.51 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.51 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.51 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.5 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.5 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.5 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.49 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.49 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.48 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.48 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.48 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.47 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.47 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.46 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.46 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.46 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.45 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.44 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.44 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.42 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.42 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.41 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.41 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.4 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.4 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.39 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.39 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.38 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.37 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.36 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.35 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.35 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.35 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.35 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.34 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.34 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.34 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.34 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.34 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.33 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.33 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.33 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.33 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.33 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.33 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.33 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.32 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.32 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.31 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.3 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.3 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.3 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.29 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.29 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 99.29 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.29 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.28 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.28 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.28 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.27 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.27 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.27 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.27 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.27 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.26 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.26 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.25 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.23 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.22 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.21 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.21 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.21 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.2 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.2 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.18 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.17 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.13 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.12 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.1 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.09 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.09 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.09 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.07 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.07 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.07 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.06 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.05 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.05 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.03 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.03 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.01 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.01 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.99 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.99 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.91 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.89 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.87 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.85 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.85 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.85 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.82 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.81 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.81 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.78 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.77 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.72 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.66 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.61 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.6 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.57 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.54 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.51 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.51 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.41 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.3 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.24 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.21 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.08 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.06 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.04 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.93 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.93 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.77 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.7 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.69 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.69 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.59 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.59 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.48 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.45 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.44 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.12 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.06 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.01 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.97 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.9 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 96.84 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.82 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.7 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.48 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.41 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.39 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.85 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 95.66 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.44 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.31 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.05 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.65 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.98 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.59 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 92.05 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.8 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.63 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 89.42 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 88.55 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 88.52 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 87.64 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 84.54 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=306.70 Aligned_cols=383 Identities=20% Similarity=0.268 Sum_probs=319.0
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+..|..++.+.++.|..+.........+|.+.+|+|.|..+.|++.++|.++..++.++...+.||+.||++++....++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34566788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
.++.+++++++ |++.+++.|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+||
T Consensus 89 i~~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 89 IVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHH
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (512)
|.+|+..+.++++..+..+...| |++.++..+.+ ..+..+.+|+|.++...+..++...+.+.
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~---------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~ 229 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSEISGSLPGP---------------LRTLLRLLRRPGVLLGLLATFLFMTGHFA 229 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcc---------------hhHHHHHhcCchHHHHHHHHHHHHcchhh
Confidence 99999999999999888888888 11111111110 11233578999999999999999999999
Q ss_pred HHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChh
Q 010343 340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 419 (512)
Q Consensus 340 ~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (512)
..+|+.+++++..|++....++++..++++.++|..++|++.|| +.++ .......+....... .....++.
T Consensus 230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-------~l~~~~~l~a~~~l~-l~~~~~~~ 300 (394)
T COG2814 230 LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-------ALIAALLLLALALLA-LTFTGASP 300 (394)
T ss_pred hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-------HHHHHHHHHHHHHHH-HHHhcchH
Confidence 99999999999999999999999999999999999999999999 5552 222222222222222 22233333
Q ss_pred HHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHH
Q 010343 420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA 499 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 499 (512)
+.......+.+...............+..||.+..+.+++....++|..+|..++|.+.|+.|+....++.+++.+++.+
T Consensus 301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~ 380 (394)
T COG2814 301 ALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALL 380 (394)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 44433333333323233333333334456799999999999999999999999999999999999999999999999988
Q ss_pred HHHHhcCCccc
Q 010343 500 VWNLFSTGEKV 510 (512)
Q Consensus 500 ~~~~~~~~~~~ 510 (512)
+.+...+++|+
T Consensus 381 ~~~~~~~~~~~ 391 (394)
T COG2814 381 LALLSARKDRR 391 (394)
T ss_pred HHHHHHhcccc
Confidence 88777666554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=307.99 Aligned_cols=398 Identities=18% Similarity=0.218 Sum_probs=325.8
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+.|++++...++++...++.+..++.+.|.+.++.++|.+|+|++.+++.+.+.++..+.|.++||.+.|+.+..++++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHH--HHHhccc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHRF 257 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~ 257 (512)
++..+++++.+ +.+.+.++.++.|+++|.-+|++...+.+|++++|||+..++.+...++|+.+.|++. +.+..+.
T Consensus 105 ai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 105 AIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999999 8998889
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHh-hhhccccCCC-----CCCchHHHhhcChHHHHHHHHHH
Q 010343 258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL-IVSSCASKEP-----VKTIPWGLILSKPPVWALIVSHF 331 (512)
Q Consensus 258 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~ 331 (512)
+||..|++.++++++..++.++..+++|++..-.+.++... ..+..+++++ .+..-++.+++||.+|.+++..+
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~v 262 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANV 262 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence 99999999999999999999999888887654322222111 1111011111 12234577899999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH
Q 010343 332 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (512)
+.+..-+++..|.|.|+.|..|++...+++..+.+-.+++.|.++.|+++||+.+.|. .....+.+++..+++.
T Consensus 263 fvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR------~p~~~i~~~~i~~~~~ 336 (448)
T COG2271 263 FVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR------GPMALIFMLLITASLV 336 (448)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc------chHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999863321 1222233333333333
Q ss_pred hhccC--Ch-hHHHHHHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhH-HHHHHHHhhhheeecCcchhH
Q 010343 412 QLSHV--DS-PAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDV 486 (512)
Q Consensus 412 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~ig~~l~g~l~~~~g~~~~ 486 (512)
.+... ++ ....+.++.+|....+.....- ....|+.| +..|++.|+...+.++ |...+....|++.|..||...
T Consensus 337 ~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiG-l~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~ 415 (448)
T COG2271 337 LYWLAPNGSYLLDAILLFIIGFLIYGPQMLIG-LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGG 415 (448)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcch
Confidence 33222 22 3334444445555555443333 33344545 6799999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 010343 487 FKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~ 506 (512)
|.+..+.++++.+++....+
T Consensus 416 Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 416 FIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99988888887776666544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=309.55 Aligned_cols=376 Identities=16% Similarity=0.173 Sum_probs=294.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
++|..++.+.++.++.........+.+|.+.+++|.|+.++|++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI 85 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 45655555555555544444555667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
++.+.+.+++ +++.+++.|+++|++.+...+...+++.|++|+++|++++|+...+..+|..++|++++.+.+.+|||
T Consensus 86 ~~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~ 163 (390)
T PRK03545 86 ASHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR 163 (390)
T ss_pred HHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence 9999999998 99999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
+.|++.+++.++..+..+...|+.+++++ + + ..+.++.+++|.++...+..++........
T Consensus 164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (390)
T PRK03545 164 TTFLAIGGGALITLLLLIKLLPLLPSEHS---G-S---------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTA 224 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCc---c-h---------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776665555444322111 0 0 113456788998887766666666666666
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhH
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 420 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
..+++.++++.+|.+..+.+.+.+..+++.++++++.+++.||+++|. ......+.......... ..++.+
T Consensus 225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~l~~-~~~~~~ 295 (390)
T PRK03545 225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF--------LLIAIALLLVCLLLLLP-AANSEW 295 (390)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH--------HHHHHHHHHHHHHHHHH-HhchHH
Confidence 778888888878999999999999999999999999999999998762 12222222222222211 223333
Q ss_pred H-HHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHH
Q 010343 421 M-AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA 499 (512)
Q Consensus 421 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 499 (512)
. ....++.+.+.. ...+.......+..|+++++++|+++...++|..+||.++|.+.|+.|++..+...+++.+++.+
T Consensus 296 ~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 296 HLSVLSIFWGIAIM-CIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHHHHHHHHHHh-cchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 3 333333333332 22333444555567788999999999999999999999999999999999999999999988887
Q ss_pred HHHHhcCC
Q 010343 500 VWNLFSTG 507 (512)
Q Consensus 500 ~~~~~~~~ 507 (512)
+.....++
T Consensus 375 ~~~~~~~~ 382 (390)
T PRK03545 375 WSILIFRR 382 (390)
T ss_pred HHHHHccc
Confidence 77666553
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=317.38 Aligned_cols=404 Identities=15% Similarity=0.170 Sum_probs=297.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
.++..+...++.+++.+++...+...+|.+.+++|+|..+.|++.+.+.++..+++++.|++.||+|||+++.++.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 35566777778888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
++.+++.+.+ +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+.++|..+++.+.+.+.+.+|||
T Consensus 100 ~~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 100 IINILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 9999999988 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhh-hHhhhhcccc-C-CCCCCch-H-HHhhcChHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE-KKLIVSSCAS-K-EPVKTIP-W-GLILSKPPVWALIVSHFCHNW 335 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~ 335 (512)
+.|++.+++.++..++..+..++++++.......+ ++...+..++ + .+....+ + +..+++|.++.+.+..++...
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYV 257 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 99999888776655544444444433211000000 0000000000 0 0000111 2 235678899988888777777
Q ss_pred HHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 336 ~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
....+..++|.|+++.+|++..+.+...+...++.++++++.|++.||+.+++... .......+.......+.....
T Consensus 258 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~---~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK11663 258 VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP---MNLIFAAGILLSVGSLWLMPF 334 (434)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH---HHHHHHHHHHHHHHHHHHccc
Confidence 88888899999998778999999999999999999999999999999994321100 011111222222222222222
Q ss_pred CChhHHHHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHH
Q 010343 416 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 494 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 494 (512)
.+........+.++.+..... ........+ .+++++|++.|+.+...++|..++|.+.|++.|+.||+..|...+++.
T Consensus 335 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~ 413 (434)
T PRK11663 335 ASYVMQAACFFTIGFFVFGPQ-MLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAA 413 (434)
T ss_pred ccHHHHHHHHHHHHHHHhhHH-HHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHH
Confidence 222222222222222211111 111223334 445789999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCccc
Q 010343 495 LVGTAVWNLFSTGEKV 510 (512)
Q Consensus 495 ~~~~~~~~~~~~~~~~ 510 (512)
+++.+..+...|++++
T Consensus 414 ~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 414 GISALLLLPFLNAQAP 429 (434)
T ss_pred HHHHHHHHHHHhhhch
Confidence 8877766665555443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=316.21 Aligned_cols=395 Identities=17% Similarity=0.147 Sum_probs=296.7
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
..+..+..+++.+++.++++..+++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|+|+++..+.++.+
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~ 105 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSA 105 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHH
Confidence 35667888888999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHH-----HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc
Q 010343 181 IATALTPV-----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH 255 (512)
Q Consensus 181 ~~~~~~~~-----~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 255 (512)
+..++.++ ++ +++.+++.|++.|++.+...+...+++.+++|+++|++++|+...+.++|.++++.+..++.+
T Consensus 106 ~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 106 ICMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 77766654 35 899999999999999999999999999999999999999999999999999999999887766
Q ss_pred cc---CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHh-h-h-hc-cccCCCCC-Cch-HHHhhcChHHHHH
Q 010343 256 RF---GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL-I-V-SS-CASKEPVK-TIP-WGLILSKPPVWAL 326 (512)
Q Consensus 256 ~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~-~~~~~~~~-~~~-~~~~~~~~~~~~~ 326 (512)
.. +|+..|.+.+++.++..++.++..+++|++....++++... . . ++ ..++++.. ... .+..+++|.+|..
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLL 263 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHH
Confidence 53 69999998888887776666666555544322111111000 0 0 00 00000100 011 2337899999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHH
Q 010343 327 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP 406 (512)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 406 (512)
.+..++.+....+...|+|.|+++.+|++..+.+...+...++.+++.++.|+++||+++|+... ........
T Consensus 264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~-------~~~~~~~~ 336 (467)
T PRK09556 264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV-------ACIALALI 336 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH-------HHHHHHHH
Confidence 99988888888888999999999889999999999999999999999999999999999885322 11111111
Q ss_pred HHHHHhhccCChhH-HHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhH-HHHHHHHhhhheee-----
Q 010343 407 AFFLTQLSHVDSPA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVL-AGVFGTAATGYILQ----- 479 (512)
Q Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~l~g~l~~----- 479 (512)
...+......++.+ ..+..+..+.+..+..........+..+++.+|++.|+.+...++ |..++|.+.|++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g 416 (467)
T PRK09556 337 IFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNG 416 (467)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccc
Confidence 11111112222332 223333333332222222112233445567899999999999997 77999999999999
Q ss_pred -------cCcchhHHHHHHHHHHHHHHHHHHh
Q 010343 480 -------HGSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 480 -------~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
..||+..|.+..++.+++.++.+.+
T Consensus 417 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 417 TPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888888877666554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=301.87 Aligned_cols=384 Identities=18% Similarity=0.272 Sum_probs=290.1
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+.+|+.++.+++.++++++++...+...|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc----
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---- 255 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---- 255 (512)
+++.+++++++ +++.+++.|++.|++.+...+....++.|++|+++|++++++++....+|..+++++++++.+
T Consensus 84 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 84 GIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999998 899999999999999999999999999999999999999999999999999999999998864
Q ss_pred --ccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhh----cc-----ccC--CCCC---CchHHHhhc
Q 010343 256 --RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS----SC-----ASK--EPVK---TIPWGLILS 319 (512)
Q Consensus 256 --~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~--~~~~---~~~~~~~~~ 319 (512)
..|||+.|++.++..++..++.+++.+|+|++.+...+++++...+ +. .++ .+.+ ...++.++
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF- 240 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-
Confidence 4699999999888888776666666677665432222222111100 00 000 0000 11244444
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-hcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQV-LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIM 398 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 398 (512)
+|.+|...+..++.....+.+.+|+|.++++. .|.+..+.+.+.....++.+++.++.|+++||+++|+.. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~------~~ 314 (412)
T TIGR02332 241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH------TA 314 (412)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH------HH
Confidence 67888888888888888889999999999872 367788889999999999999999999999999877321 11
Q ss_pred HHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhh-hhcCcchhhHHHHHHHHHhHHHHHHHHhhhhe
Q 010343 399 QSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYI 477 (512)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l 477 (512)
...........+ .....+. ......+...........+....... ..++++++++.|+.+...++|.+++|.+.|.+
T Consensus 315 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i 392 (412)
T TIGR02332 315 LPYLFAAAGWLL-ASATDHN-LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL 392 (412)
T ss_pred HHHHHHHHHHHH-HHhcCCH-HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 111111111111 1112222 22221111111111111122222223 35568899999999999999999999999999
Q ss_pred eecC-cchhHHHHHHHHH
Q 010343 478 LQHG-SWDDVFKVSVGLY 494 (512)
Q Consensus 478 ~~~~-g~~~~~~~~~~~~ 494 (512)
.|.. +|+..+.+.+++.
T Consensus 393 ~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 393 KDATGSFNSGLWFVAALL 410 (412)
T ss_pred cccCCCCchhHHHHHHHH
Confidence 9986 5999888776654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=304.22 Aligned_cols=410 Identities=30% Similarity=0.529 Sum_probs=319.2
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc----------------------ccCCChhhHHHHHHHHHHHHHHH
Q 010343 98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSA----------------------EFNWNPATVGLIQSSFFWGYLLT 155 (512)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~g~~~~~~~~~~~~~ 155 (512)
..+.+|.+..++++++.+.+.++...+...+.+.+ +++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 45578889999999999999999999999888876 78999999999999999999999
Q ss_pred HhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHH
Q 010343 156 QIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV 235 (512)
Q Consensus 156 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (512)
+++.|+++||+|+|+++..+.++.+++.+++.+....+++.+++.|+++|++.+...+....++.+++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999988888776553226788999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHhHHHHHhccc-CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccC--CCCCCc
Q 010343 236 YSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK--EPVKTI 312 (512)
Q Consensus 236 ~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 312 (512)
..+..+|.++++++++.+.+.. |||+.|++.+++.++..++.+...+++|+++++.++.+++...+..+++ +..++.
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 252 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSL 252 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCC
Confidence 9999999999999999999884 9999999999988887777777766666544433333332222111111 122345
Q ss_pred hHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q 010343 313 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVT 392 (512)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 392 (512)
+++++++++.+|...+..++.....+.+..|+|.|+++.+|++..+.++..++..++.+++.++.|++.||+++|+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~ 332 (465)
T TIGR00894 253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332 (465)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999987754332
Q ss_pred hH-HHHHHHHHhHHHHHHHHhhcc-CChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHH
Q 010343 393 TV-RKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG 470 (512)
Q Consensus 393 ~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig 470 (512)
.. +......+............. ....+..+.++.++++..............+..|+..|.+.|+.+....++..++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~ 412 (465)
T TIGR00894 333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIA 412 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 11 112222222222222211111 2233333333444444333333444445556777899999999999999999999
Q ss_pred HHhhhheeec---CcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 471 TAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 471 ~~l~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
|.+.|.+.+. .+|..+|.+.+++.+++.++.....+.
T Consensus 413 p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 452 (465)
T TIGR00894 413 STLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSA 452 (465)
T ss_pred HHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 9999999875 348888999888888887776655433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=299.06 Aligned_cols=387 Identities=26% Similarity=0.434 Sum_probs=302.1
Q ss_pred HHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 010343 113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 192 (512)
+++..++...+....|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-- 80 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-- 80 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--
Confidence 455677778888889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHH
Q 010343 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272 (512)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 272 (512)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|++.+++.++
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHhhhccCCCCCCCCCChhhhHhhhhc------cccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSS------CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
..++.+...++++++++...+++++...+. .+++++.+....++.+++|+++...+..++.......+..+.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT 240 (399)
T ss_pred HHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 776666665555443322222222111111 11112223445778899999999999999998999999999999
Q ss_pred HHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHH
Q 010343 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM 426 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
|+++.+|.+..+.+.+.+...++.+++.++.|++.||+++|+...... ......+.+............+..+......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (399)
T TIGR00893 241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA-RKTAIIAGLVLSLLMFATNYVNIPYAALALV 319 (399)
T ss_pred HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999888999999999999999999999999999999999985222111 1111112111222222222223333333334
Q ss_pred HHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc-chhHHHHHHHHHHHHHHHHHH
Q 010343 427 ACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTAVWNL 503 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 503 (512)
.++....+ ..+....+. +..++++|+++.|+.+.+.++|..++|.+.|.+.|..| |...+.+.+++.+++.++...
T Consensus 320 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 320 ALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred HHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34444433 334444444 44556889999999999999999999999999999988 999999888888777665543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=293.68 Aligned_cols=378 Identities=40% Similarity=0.777 Sum_probs=336.9
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhc
Q 010343 131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV 210 (512)
Q Consensus 131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 210 (512)
..++++|..+-|++.+.+..|+++++++.|+++||+|.|+++..+.++.+++.++.+++.+.+++.+++.|+++|++.+.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 34688999999999999999999999999999999999999999999999999999998877778889999999999999
Q ss_pred hhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc-cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010343 211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 289 (512)
Q Consensus 211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (512)
.+|+...+..+|.|++||++..++..++..+|.+++.+++|.+.+. +||++.|++.++++++..++++.+..++|.+++
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP 224 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 9999999999999999999999999999999999999999999998 999999999999999999999999999998888
Q ss_pred CCChhhhHhhhhccccCCCC--CCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhH
Q 010343 290 QLRPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW 367 (512)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~ 367 (512)
...++|.+...+...+++.+ ...||+.+++++.+|.+.+..+......+.+..++|.|+++.+|++..+.|++.++..
T Consensus 225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~ 304 (466)
T KOG2532|consen 225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPF 304 (466)
T ss_pred CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHH
Confidence 88888877776665544443 4789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCC--hhHHHHHHHHHHhhhhhhhhchhhhhhh
Q 010343 368 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQ 445 (512)
Q Consensus 368 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
+...+..+++|.++||...|.+.....++..-.++..+.++.++.+...+ ..+..+.++.+..+..+........-..
T Consensus 305 l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~ 384 (466)
T KOG2532|consen 305 LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ 384 (466)
T ss_pred HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh
Confidence 99999999999999999886555555577888888888887777776655 3445666666666667777677776666
Q ss_pred hhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec---CcchhHHHHHHHHHHHHHHHHHHhcCCc
Q 010343 446 DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 446 ~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (512)
+..|++.+..+|+.+.+..+..+++|.+.|.+... ..|+.+|++.+++.+++.+++.++.+.+
T Consensus 385 ~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e 450 (466)
T KOG2532|consen 385 DIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGE 450 (466)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCc
Confidence 66899999999999999999999999999999943 5899999999999999998887775443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=288.93 Aligned_cols=367 Identities=15% Similarity=0.163 Sum_probs=277.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
+.|+.+..+.+..+............+|.+.+++|.++.++|+..+++.++..+++++.|++.||+|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~ 96 (394)
T PRK10213 17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 96 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 35666566666555555555566667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
++.+++.+.+ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.....++|..++|.+++.+.+.+|||
T Consensus 97 ~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~ 174 (394)
T PRK10213 97 LSCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174 (394)
T ss_pred HHHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 9999998887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
+.|++.+++.++..+......|+.++++++ . ..+.++.+++|.++...+..++........
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~---~----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLPGEPSH---Q----------------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAF 235 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCccccc---c----------------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999998877766554444434443211100 0 112446788999988777666666666666
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhH
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 420 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
..++++++.+++|+++.+.+.++...+++.+++.++.+++.||.+++ .......+.....+......+..+
T Consensus 236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~---------~l~~~~~~~~~~~~~l~~~~~~~~ 306 (394)
T PRK10213 236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL---------ALAGAPLVLAVSALVLTLWGSDKI 306 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh---------HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 67764444445799999999999999999999999999999995433 111111221111111111222233
Q ss_pred H-HHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHH
Q 010343 421 M-AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT 498 (512)
Q Consensus 421 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~ 498 (512)
. ....++.+.+ .....+......++..|++.+++.++.....++|..+|+.++|++.|..|+...+...+++.++..
T Consensus 307 ~~~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 307 VATGVAIIWGLT-FALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 3 3333333333 344445455444444567778888888888999999999999999999999988888776655544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=290.37 Aligned_cols=382 Identities=22% Similarity=0.274 Sum_probs=286.7
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+++|..+.+.++..++.+++....++..|.+.+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 47888888998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
+++.+++.+.+ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|
T Consensus 91 ~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 168 (406)
T PRK11551 91 GLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW 168 (406)
T ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 99888888888 8999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhc---ChHHHHHHHHHHHHHHH
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS---KPPVWALIVSHFCHNWG 336 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~ 336 (512)
++.|++.+++.++..++.....+++++..++..+.+.+ ....+..++ .+..+.+.+..++....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-------------APVLRALFGEGRATATLLLWISYFFTLIV 235 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-------------hhhHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999888776666555555555543321111000000 001111222 22333444444454556
Q ss_pred HHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccC
Q 010343 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 416 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (512)
.+....+.|.++++ .|++..+.+.+.+..+++.++++++.|++.||+++++. ... ..+.....+......
T Consensus 236 ~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------~~~--~~~~~~~~~~~~~~~ 305 (406)
T PRK11551 236 LYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV-------VLL--IYAGILASLAALAAA 305 (406)
T ss_pred HHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHH--HHHHHHHHHHHHHhc
Confidence 66777889999987 69999999999999999999999999999999998832 222 222112222222222
Q ss_pred Chh-HHHHHHHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecC-cchhHHHHHHHH
Q 010343 417 DSP-AMAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-SWDDVFKVSVGL 493 (512)
Q Consensus 417 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~-g~~~~~~~~~~~ 493 (512)
+.. ......++.+.+..... +..... .+..++++|+++.|+.+....+|..++|.+.|.+.++. ++...+.....+
T Consensus 306 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 384 (406)
T PRK11551 306 PSFAGMLLAGFAAGLFVVGGQ-SVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPV 384 (406)
T ss_pred CcHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHH
Confidence 232 23333333333333333 333344 44556688999999999999999999999999999974 556666666666
Q ss_pred HHHHHHHHHHhcCC
Q 010343 494 YLVGTAVWNLFSTG 507 (512)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (512)
.+++.++.+...++
T Consensus 385 ~~~~~~~~~~~~~~ 398 (406)
T PRK11551 385 ILVAALAALLLVSR 398 (406)
T ss_pred HHHHHHHHHHHhcc
Confidence 66665555544443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=295.77 Aligned_cols=401 Identities=15% Similarity=0.201 Sum_probs=282.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
++|..+..+++.....+..+..+.+..|.+.++ |+|..+.|++.+.+.++..+++++.|+++||+|||++++++.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 456666666666777777777777888988888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh--cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHH-HHHhHHHHHhccc
Q 010343 181 IATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV-TGLAFSPFLIHRF 257 (512)
Q Consensus 181 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~ 257 (512)
++.+++++.+. .+++.+++.|++.|++.+...+.....+.+++|+++|++++++.+.+..+|.. .+++++..+....
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 98888876531 15778899999999999988888888999999999999999999999999874 4555444443445
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhc---cccCCCCC-Cch-HHHhhcChHHHHHHHHHHH
Q 010343 258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSS---CASKEPVK-TIP-WGLILSKPPVWALIVSHFC 332 (512)
Q Consensus 258 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~ 332 (512)
|||+.|++.+++.++..++..++.++++++....++.+.+....+ ..++++.+ ... .+.+++++.+|...+..++
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVF 264 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999999998888777666666665655433211111110000000 00000000 111 2346789999998888888
Q ss_pred HHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHh
Q 010343 333 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ 412 (512)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (512)
.+...+....++|.|+++..|++..+.+.+..+..++.+++.++.|+++||+++++... ..+....+.........
T Consensus 265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~----~~~~~~~l~~~~~~~~~ 340 (452)
T PRK11273 265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA----TGVFFMTLVTIATIVYW 340 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch----HHHHHHHHHHHHHHHHH
Confidence 88888888999999999988999999999999999999999999999999995432111 01111111111111111
Q ss_pred hccCChhH-HHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHH-HHHhhhheeecCcchhHHHHH
Q 010343 413 LSHVDSPA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVFKVS 490 (512)
Q Consensus 413 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~l~g~l~~~~g~~~~~~~~ 490 (512)
.......+ .....+.++...............+..+++.+|+++|+.+...++|+.+ +|.+.|.+.|+.||+..|+++
T Consensus 341 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~ 420 (452)
T PRK11273 341 LNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 420 (452)
T ss_pred HhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHH
Confidence 21122222 2222233332222211111112234556688999999999998888765 799999999999999999988
Q ss_pred HHHHHHHHHHHHHhcC
Q 010343 491 VGLYLVGTAVWNLFST 506 (512)
Q Consensus 491 ~~~~~~~~~~~~~~~~ 506 (512)
+++++++++....+.+
T Consensus 421 ~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 421 IGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888777766655544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=290.86 Aligned_cols=375 Identities=15% Similarity=0.176 Sum_probs=287.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
+|++..+.+++.+++.+......++.+|.+.+++|+|..+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56778888888899998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-ccCc
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGW 259 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~ 259 (512)
++.++..+.+ +++.+++.|++.|++.+...+...+++.+++|+++|+++++..+....+|..++|.+.+.+.+ ..||
T Consensus 84 i~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw 161 (394)
T PRK03699 84 LAVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW 161 (394)
T ss_pred HHHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 9999999888 889999999999999998889999999999999999999999999999999999999888764 5799
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHH
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (512)
|+.|.+.+++.++..++.+... .|+.+++.++++ ++. .+. ..++.++...+..++....++.
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~-----------~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~ 223 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLFSE--FPALGKHAPKAD-----------KPV----AKE-KWGIGVLFLAIAALLYILAQLT 223 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CccccccCcccc-----------Ccc----ccc-cCChHHHHHHHHHHHHHHHHHH
Confidence 9999988887766655443322 111111100000 000 011 1246677777777777777788
Q ss_pred HHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChh
Q 010343 340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 419 (512)
Q Consensus 340 ~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (512)
+..|+|.|+++.+|++..+.+.+.+...++..+++++.+++.||+++|+.. .....+....... .....+..
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l-------~~~~~~~~~~~~~-~~~~~~~~ 295 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL-------TVLAGLALVLMYL-FVNTDDPS 295 (394)
T ss_pred HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH-------HHHHHHHHHHHHH-HHHcCCch
Confidence 899999999888899999999999999999999999999999999998532 2111111111111 11222233
Q ss_pred HHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHH
Q 010343 420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA 499 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 499 (512)
+.....+..+.+.. ...+.......+..++++++..|......++|..++|.+.|++.|..|++..++..+++++++.+
T Consensus 296 ~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 296 HLLYAILGLGFFSS-AIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 33333344443333 23334444444555666788889999999999999999999999999999999888877777755
Q ss_pred HHHHh
Q 010343 500 VWNLF 504 (512)
Q Consensus 500 ~~~~~ 504 (512)
+....
T Consensus 375 ~~~~~ 379 (394)
T PRK03699 375 MCILL 379 (394)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=286.93 Aligned_cols=376 Identities=14% Similarity=0.165 Sum_probs=281.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
..|.....++.+.+.... .....+.+|.+.+++|+|..+.|++.+++.+++.+++++.|++.||+|||+++..+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred hHHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 455555555555554333 3667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc-Cc
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GW 259 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~ 259 (512)
++.+++++++ +++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++.+.++. +|
T Consensus 86 ~~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w 162 (393)
T PRK09705 86 VGALMRELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW 162 (393)
T ss_pred HHHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 9999999999 89999999999999999999999999999996 88999999999999999999999999988875 89
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHH
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (512)
|+.+.+.++..++..+..+...++.++++++. + ...++.+++++.|...+..++....+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 223 (393)
T PRK09705 163 YQTLAWWALPAVVALFAWWWQSAREVASSHKT----T---------------TTPVRVVFTPRAWTLGVYFGLINGGYAS 223 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCC----C---------------cCCcccccCHhHHHHHHHHHHHHHHHHH
Confidence 99887766655544333333222222111000 0 0112345778888777777777778888
Q ss_pred HHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChh
Q 010343 340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 419 (512)
Q Consensus 340 ~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (512)
...++|.|+++ +|++..+.+...+..+++.++++++.+++.||+++|+. ......+...+.........+..
T Consensus 224 ~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~ 295 (393)
T PRK09705 224 LIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL-------LMLALVLQLVGFCGFIWLPLQLP 295 (393)
T ss_pred HHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH-------HHHHHHHHHHHHHHHHHccchHH
Confidence 89999999988 79999999999999999999999999999999998732 22222222222221111111122
Q ss_pred HHHHHHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecCc-chhHHHHHHHHHHHH
Q 010343 420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVG 497 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~~~ 497 (512)
.. ...+.+.+.+...+.......+..+| +++|+..|+.+...+++..++|.+.|++.|+.| |...|.+.+++++++
T Consensus 296 ~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (393)
T PRK09705 296 VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL 373 (393)
T ss_pred HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 21 12223333333333333333444544 679999999999999999999999999999854 888888888777777
Q ss_pred HHHHHHhcCCcc
Q 010343 498 TAVWNLFSTGEK 509 (512)
Q Consensus 498 ~~~~~~~~~~~~ 509 (512)
.++...+.++++
T Consensus 374 ~~~~~~~~~~~~ 385 (393)
T PRK09705 374 MIITLRFAPARF 385 (393)
T ss_pred HHHHHHhccccc
Confidence 776666655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=290.73 Aligned_cols=393 Identities=14% Similarity=0.103 Sum_probs=282.8
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+++++.+...+...++.......+.+.+|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~ 111 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLT 111 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455666666777777777778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc----
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---- 255 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---- 255 (512)
+++.++.++++ +++.++++|++.|++.+... ....++.+++|+++|++++|+.+...++|..+++.+.+.+..
T Consensus 112 ~~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~ 188 (476)
T PLN00028 112 APAVFCMSLVS--SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD 188 (476)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888888 88999999999999987654 456788999999999999999988888888777766655432
Q ss_pred -----ccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHH
Q 010343 256 -----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSH 330 (512)
Q Consensus 256 -----~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (512)
..|||+.|++.+++.++..++.+++.++.|+.. .++.+++ .+.++......+++.++++++|.+.+..
T Consensus 189 ~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (476)
T PLN00028 189 AGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN--YRELKKS-----GTMPKDSFSKVLRYGVTNYRTWILALTY 261 (476)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc--hhhHHhc-----CccccccHHHHHHHHHcCchhHHHHHHH
Confidence 258999999999888877766666554433221 0010000 0000111123456678889988877776
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHH
Q 010343 331 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL 410 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (512)
++.......+..++|.|+.+.+|++..+++.+.+...++.++++++.|+++||+++|+.... +.........+.++..
T Consensus 262 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~--r~~~~~~~~~l~~i~~ 339 (476)
T PLN00028 262 GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRG--RLWALWIVQTLGGVFC 339 (476)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcch--hHHHHHHHHHHHHHHH
Confidence 66666666778889999988789999999999999999999999999999999987632111 1122222222222222
Q ss_pred HhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHH
Q 010343 411 TQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVS 490 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~ 490 (512)
......++.......+++..............+..+..|+++|++.|+.+...++|..++|.+.+ ..+..+|+..|.+.
T Consensus 340 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~ 418 (476)
T PLN00028 340 IWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLM 418 (476)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHH
Confidence 22222333322222222222222122233334445567789999999998888888888887765 23346799999999
Q ss_pred HHHHHHHHHHHHHhc
Q 010343 491 VGLYLVGTAVWNLFS 505 (512)
Q Consensus 491 ~~~~~~~~~~~~~~~ 505 (512)
+++.+++.++.++.+
T Consensus 419 ~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 419 GVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHHHhee
Confidence 888888877766654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=284.45 Aligned_cols=384 Identities=14% Similarity=0.096 Sum_probs=289.1
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
++.+.....+.+..++..+....+.+.+|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+..+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45677777778888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
+++.+++.+.+ +++.+++.|++.|++.+...+...+.+.|.+|+++|.+.+++......+|..+||.+++.+.+..+|
T Consensus 89 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 89 ILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred HHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 99999888888 8999999999999999988899999999999999999999999999899999999999999998999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHH
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (512)
|+.|++.+++.++..+..+...|+++++.++..+. ++ ...+++.++++|.++...+..++.......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-KE------------LGRDYKLVLKNRRFVAGALALGLVSLPLLA 233 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-HH------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 99999988888777665555555443221111000 00 123466788999998888877777666667
Q ss_pred HHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh---ccC
Q 010343 340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL---SHV 416 (512)
Q Consensus 340 ~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 416 (512)
...+.|.++.+.+|+++.+.+.......++.+++.++.+++.||+++++. ..........+...... ...
T Consensus 234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~ 306 (406)
T PRK15402 234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-------IRMGLWPMVAGLLLAALATVISS 306 (406)
T ss_pred HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHHHHHHHccc
Confidence 77788999888889999999988888888899999999999999998842 22111111111111111 112
Q ss_pred ChhHHHH-HHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHH
Q 010343 417 DSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL 495 (512)
Q Consensus 417 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~ 495 (512)
...++.. ...+.+.+.+. ..+..........++++|++.+..+....++..+|+.+.|.+.+..+.........+..+
T Consensus 307 ~~~~~~~~~~~~~g~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 307 HAYLWLTAGLSLYAFGIGL-ANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGL 385 (406)
T ss_pred ccHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Confidence 2233322 33333333332 233333334444568899999999999999999999999999998775554444444444
Q ss_pred HHHHHHHHhcC
Q 010343 496 VGTAVWNLFST 506 (512)
Q Consensus 496 ~~~~~~~~~~~ 506 (512)
+..++...+.|
T Consensus 386 ~~~~~~~~~~~ 396 (406)
T PRK15402 386 LWLLLVRIFLK 396 (406)
T ss_pred HHHHHHHHHhc
Confidence 44333333333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=284.39 Aligned_cols=375 Identities=15% Similarity=0.183 Sum_probs=280.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.+..+.+..+..........+.+|.+.+++|.+..+.|++.+++.++..++++++|++.||+|||+++..+.++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 35556667777788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHH
Q 010343 185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264 (512)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 264 (512)
++++++ +++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..+++++++.+.+..|||+.|+
T Consensus 84 l~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~ 161 (382)
T PRK10091 84 MFTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL 161 (382)
T ss_pred HHHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence 999998 999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhh
Q 010343 265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 344 (512)
+.+++.++..+..+...|+.+++.+. + .+ ..+ +.++++..+...+..++..........++
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~~~~~~-~--~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIRDEAKG-G--LR---------------EQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYI 222 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCccccc-C--HH---------------HHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887777666555555553321110 0 00 012 34577777766665555555555566777
Q ss_pred HHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHH
Q 010343 345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL 424 (512)
Q Consensus 345 ~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (512)
+.++.+.+|+++.+.+.+.+..+++.++++++.+++.||+++++. ......+.....................
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 295 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-------AAVTDFIIVLALLMLFFFGGMKTASLIF 295 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888887789999999999999999999999999999999998743 2222222122221121112222222222
Q ss_pred HHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeec-CcchhHHHHHHHHHHHHHHHHH
Q 010343 425 CMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWN 502 (512)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~ 502 (512)
.++.+.+......+......++..+ +..+.+ ..+...++|..+||.+.|++.|. .+|+..+.+.+++.++......
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 296 AFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 2333333333333333333333333 445544 34677899999999999999996 7899999998877777766655
Q ss_pred HhcCCcc
Q 010343 503 LFSTGEK 509 (512)
Q Consensus 503 ~~~~~~~ 509 (512)
.+.++|+
T Consensus 374 ~~~~~~~ 380 (382)
T PRK10091 374 LYGRYKR 380 (382)
T ss_pred HHhhhhc
Confidence 5554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=288.83 Aligned_cols=369 Identities=14% Similarity=0.140 Sum_probs=288.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
++|..+..++++.++..++..+++..+|.+.+++|.+..+.+|+.+.+.++..++++++|+++||+|||+++..+.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhccc-CCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
++.+++++++ +++.++++|+++|++.+...+.....+.+.+ |+++|++++|+......+|..+||.+++.+.++.||
T Consensus 83 ~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 83 LASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 9999999998 9999999999999999999888888887776 678999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCC-CChhhhHh-----------hhhc-------------------------
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-LRPAEKKL-----------IVSS------------------------- 302 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~------------------------- 302 (512)
|+.|++...+.++..++..+..|++++++.+ .+...... ....
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 240 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999998888777766666666654432211 11100000 0000
Q ss_pred -cccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHH
Q 010343 303 -CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIA 381 (512)
Q Consensus 303 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~ 381 (512)
.+...+....+ .+++++|.++...+..++......+...++|.|+++.+|+++.++|.......++..++.++.|++.
T Consensus 241 ~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~ 319 (495)
T PRK14995 241 RTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV 319 (495)
T ss_pred HHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111112 3578899888888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHhHHHHHHHH-hhccCChhH-HHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHH
Q 010343 382 DTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLSHVDSPA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 459 (512)
Q Consensus 382 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 459 (512)
||+++|+. ......+...+...+ .....+..+ .....++.+.+.+....+.........++++++.+.+++
T Consensus 320 ~r~g~~~~-------~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 392 (495)
T PRK14995 320 SRLGLRLV-------ATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIE 392 (495)
T ss_pred HHcCchHH-------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHH
Confidence 99998732 211111111111111 112222232 333444445555555555555566667778999999999
Q ss_pred HHHHhHHHHHHHHhhhheee
Q 010343 460 NTAGVLAGVFGTAATGYILQ 479 (512)
Q Consensus 460 ~~~~~~g~~ig~~l~g~l~~ 479 (512)
+...++|..+|+.+.|.+.+
T Consensus 393 ~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 393 TMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=277.93 Aligned_cols=360 Identities=14% Similarity=0.082 Sum_probs=262.5
Q ss_pred HHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcCh
Q 010343 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (512)
.+......+.+.+|.+.+|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+ ++
T Consensus 2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~ 79 (368)
T TIGR00903 2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NY 79 (368)
T ss_pred hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cH
Confidence 3456677888999999999999999999999999999999999999999999999887665555544433233335 89
Q ss_pred HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHH
Q 010343 195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF 274 (512)
Q Consensus 195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 274 (512)
+.+++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+.+|||+.|++.+++.++..
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 9999999999999985 456666679999999999999999999999999999999999999999999999888888877
Q ss_pred HHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcC
Q 010343 275 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF 354 (512)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~ 354 (512)
++.++..||+|+++++..+.+ + ...++++++++|.+|.+.+..++....++.+..|+|.|+++ .|+
T Consensus 159 ~~~~~~lp~~p~~~~~~~~~~-~------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~ 224 (368)
T TIGR00903 159 ILVLAALPALPFQAAEGFGFK-D------------AVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGL 224 (368)
T ss_pred HHHHHHcCCCCCCCCCCcchH-H------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 777777777654332111000 0 01246789999999999999999999999999999999977 578
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhh
Q 010343 355 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA 434 (512)
Q Consensus 355 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (512)
+.. .+....+..+.+.++ .++++||..|++. +........+..+..+............+.+..+...+..
T Consensus 225 s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~-----r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (368)
T TIGR00903 225 EDI-AGDAVALAILAGLIG---VAVIPDRVARAGL-----RSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLML 295 (368)
T ss_pred ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhh
Confidence 764 556555555555544 4677887755421 0111111111112222121222222233333333333333
Q ss_pred hhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHH
Q 010343 435 FSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 502 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (512)
...+....+..+..| +.||++.|+.+...++++.++|.+.|.+.. |....|.+.++..+++.+...
T Consensus 296 ~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 296 PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555 789999999999999999999999988774 777888888888877776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=284.46 Aligned_cols=371 Identities=18% Similarity=0.190 Sum_probs=277.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
|..+.......+. ......+.+..|.+.+++|+|..++|++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~ 81 (377)
T TIGR00890 3 WYVLVGTVIMCFT-SGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG 81 (377)
T ss_pred EEEeHHHHHHHHH-hhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence 3333444443333 334667788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhH
Q 010343 183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV 262 (512)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 262 (512)
.+++++++ +++.+++.|++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..|||+.
T Consensus 82 ~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 158 (377)
T TIGR00890 82 FTFYAIAD--SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAA 158 (377)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHH
Confidence 99999998 89999999999999999888888888899985 6799999999999999998888787888888899999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHH
Q 010343 263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342 (512)
Q Consensus 263 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 342 (512)
|++.+++.++..+..+...+++++++.+.+++ .+.+....++.+++|.++.+.+..++..........
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (377)
T TIGR00890 159 FIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIE------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIG 226 (377)
T ss_pred HHHHHHHHHHHHHHHHHheecCchhccccCcc------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHH
Confidence 99999888887766665554433221111000 000122456778899888877777766666666667
Q ss_pred hhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHH
Q 010343 343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA 422 (512)
Q Consensus 343 ~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (512)
+.+.|.++ +|.+..+.+.+.+...++.++++++.|++.||+++|+... ........................
T Consensus 227 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T TIGR00890 227 LYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS-------IVFGISAVGMAAMLFIPMLNDVLF 298 (377)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------HHHHHHHHHHHHHHHcccchhHHH
Confidence 77777766 7888888999999999999999999999999999885321 111111111111222121122222
Q ss_pred -HHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHH
Q 010343 423 -VLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT 498 (512)
Q Consensus 423 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~ 498 (512)
......+...+.. ........ +..++++++++.|+.+...++|..++|.+.|.+.++.||+..|.+.+++.+++.
T Consensus 299 ~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 299 LATVALVFFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 2222233333322 23333333 445668899999999999999999999999999999999999998887777654
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=284.73 Aligned_cols=381 Identities=14% Similarity=0.141 Sum_probs=273.1
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHH
Q 010343 99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW 178 (512)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 178 (512)
.+++|+.+..+++.++..+++.....+..|.+.+++|.++.++|++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
.+++.+++.+.+ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 87 FSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988 899999999999999999999999999999999999999999999999999999999999988766
Q ss_pred --chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCh-hhhHhhhhccccCCCCCCc-------hHHHhh-cCh-HHHHH
Q 010343 259 --WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP-AEKKLIVSSCASKEPVKTI-------PWGLIL-SKP-PVWAL 326 (512)
Q Consensus 259 --~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~-~~~~~ 326 (512)
||+.|++.++..++..+ .....|++++.+++.++ .+.....++..++++..+. ..+... +++ .+...
T Consensus 165 ~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (405)
T TIGR00891 165 DGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYL 243 (405)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHH
Confidence 99999876655544433 33333433221111000 0000000000000000000 001100 111 12223
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHH
Q 010343 327 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP 406 (512)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 406 (512)
.+...+..........++|.|+.+.+|++..+.+.+.+...++.++++++.+++.||+++|+... ...... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~-------~~~~~~-~ 315 (405)
T TIGR00891 244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV-------CSLLAG-Q 315 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhH-------HHHHHH-H
Confidence 33333334445566778899998888999999999999999999999999999999999885322 111111 1
Q ss_pred HHHHHhhccCChhHHHHHH-HHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc-ch
Q 010343 407 AFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WD 484 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g-~~ 484 (512)
..........+..+..... .+.+...............+..+++++|+++|+.+...++|..++|.+.|.+.|+.| |+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~ 395 (405)
T TIGR00891 316 LLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG 395 (405)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111111112233322222 333333333322223333444556889999999999999999999999999999988 87
Q ss_pred hHHHHH
Q 010343 485 DVFKVS 490 (512)
Q Consensus 485 ~~~~~~ 490 (512)
..+...
T Consensus 396 ~~~~~~ 401 (405)
T TIGR00891 396 TALASL 401 (405)
T ss_pred hhHHhh
Confidence 766553
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=293.45 Aligned_cols=393 Identities=15% Similarity=0.143 Sum_probs=279.3
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHH
Q 010343 99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW 178 (512)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 178 (512)
.+.+|.++++++++.+..+++...++..+|.+.+++|++..+.+++.+++.++.+++.+++|+++||+|||+.++++.++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45678888888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc--
Q 010343 179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-- 256 (512)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-- 256 (512)
.+++.+++++++ +++.++++|++.|++.+...+...+++.|++|+++|++.+++..+++.+|.++++.++..+...
T Consensus 242 ~~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 242 NGFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999988 8999999999999999999999999999999999999999999999999999999888776643
Q ss_pred -----------cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-Chhh--------------------hH----hhh
Q 010343 257 -----------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL-RPAE--------------------KK----LIV 300 (512)
Q Consensus 257 -----------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------------~~----~~~ 300 (512)
.+||+.+++.++..++.. +..++.|++|+..... +..+ .. ...
T Consensus 320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~ 398 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK 398 (742)
T ss_pred chhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence 358888888776655544 4445556665321000 0000 00 000
Q ss_pred hcc-c----c-CCCCCC-----------------chHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHh---
Q 010343 301 SSC-A----S-KEPVKT-----------------IPWGLILSKP---PVWALIVSHFCHNWGTFILLTWMPTYYNQV--- 351 (512)
Q Consensus 301 ~~~-~----~-~~~~~~-----------------~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~--- 351 (512)
... . + +...+. .+++.+++.+ ..+.+++..+...++++++..|+|.++++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 000000 1244444433 345667777888888999999999876541
Q ss_pred -h-----------------cCCcc--------------------------------------------------------
Q 010343 352 -L-----------------HFNLT-------------------------------------------------------- 357 (512)
Q Consensus 352 -~-----------------g~~~~-------------------------------------------------------- 357 (512)
+ +++.+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 0 00000
Q ss_pred -------------------------------------chhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 010343 358 -------------------------------------ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400 (512)
Q Consensus 358 -------------------------------------~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 400 (512)
.......+.+++.+++.++.|+++||+|||+ ++.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~---------~l~ 629 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR---------MLA 629 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------HHH
Confidence 1123345667889999999999999999983 223
Q ss_pred HHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheee
Q 010343 401 IGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ 479 (512)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~ 479 (512)
.++++.+++.+...........+++.++..++.....+....+..+..| +.|++++|+.+....+|.+++|+++|.+.+
T Consensus 630 ~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 630 GSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333322222222223332223233333344555566666655 789999999999999999999999998877
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHh
Q 010343 480 HGSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 480 ~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
. +....|++.+++.+++.++..++
T Consensus 710 ~-~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 710 I-TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHhC
Confidence 5 45667777777777766655544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=279.32 Aligned_cols=384 Identities=15% Similarity=0.109 Sum_probs=266.7
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccC---CChhhHHH---HHHHHHHHHHHHHhhhhHhHhhcCChHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFN---WNPATVGL---IQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~---~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 174 (512)
+++..+...+++.++..++...+....|.+.++++ .+..+.+. +.++..++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45666777778899999999999999999999984 55554444 4445555555999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCh--------HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHH
Q 010343 175 GVVWWSIATALTPVAAKLGL--------PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG 246 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 246 (512)
+.++++++.+++++++ ++ ..++++|+++|++.+...+...+++.|++|+++|++..++.+.+...|..++
T Consensus 99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 99 SVCMMCFGSLVIACLP--GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 54 3688999999999999999999999999999999999999988888888888
Q ss_pred HhHHHHHh--------cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhh
Q 010343 247 LAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL 318 (512)
Q Consensus 247 ~~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (512)
+.+...+. +.+|||+.|++.+++.++... .....+|+++. +.+. ..+..++++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~-------~~~~---------~~~~~~~~~l~ 239 (432)
T PRK10406 177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ-------ETRA---------LKEAGSLKGLW 239 (432)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH-------HHhh---------hcccccHHHHH
Confidence 87765543 257999999987776655432 22222222111 0000 00123577888
Q ss_pred cChHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 010343 319 SKPPVWALIVSHFCH-NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 397 (512)
Q Consensus 319 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 397 (512)
++++.+...+...+. ...++.+..|+|.|+++.+|++..+.+...+...++..++..+.|+++||+++|+. .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~-------~ 312 (432)
T PRK10406 240 RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS-------M 312 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-------H
Confidence 898887766655443 56677888999999988789999899998888888888999999999999998842 2
Q ss_pred HHHHHhH-HHHH-HHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhH-HHHHHHHh
Q 010343 398 MQSIGFL-GPAF-FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVL-AGVFGTAA 473 (512)
Q Consensus 398 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~-g~~ig~~l 473 (512)
.....+. .... ........+.......+...+................+. +++.|+++.|+.+...++ .+...|.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~ 392 (432)
T PRK10406 313 LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYV 392 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHH
Confidence 1111111 1111 111111222222222222222222222223344444444 557899999999877664 35558888
Q ss_pred hhheeecCcchhHHHHHHHHHHHHHHHHHHhcCCccc
Q 010343 474 TGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 510 (512)
Q Consensus 474 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (512)
.+.+.+...+...+++.+++.+++.+..++..++.|.
T Consensus 393 ~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 429 (432)
T PRK10406 393 ALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKG 429 (432)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 8866433446666777777777776666665555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=285.50 Aligned_cols=404 Identities=15% Similarity=0.216 Sum_probs=287.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 181 (512)
+|..++.+.+.+...+.....+....|.+.+ +|.++.+.|++.+++.++..+++++.|+++||+|||+.+..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 4666677777777777777777777887776 599999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhh--cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-ccC
Q 010343 182 ATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFG 258 (512)
Q Consensus 182 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g 258 (512)
+.++..+.+. .+++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+....+|..+++.+.+...+ ..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 8887765421 1567788899999999999999999999999999999999999999999999999888776544 578
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChh--hhHhhhhccc-cCCCC-CCc-hHHHhhcChHHHHHHHHHHHH
Q 010343 259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA--EKKLIVSSCA-SKEPV-KTI-PWGLILSKPPVWALIVSHFCH 333 (512)
Q Consensus 259 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~ 333 (512)
||+.|++.+++.++..++.++..++++++....+.+ +.+...+..+ .+++. .+. -.+.+++++.+|...+..++.
T Consensus 184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (438)
T TIGR00712 184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFV 263 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHH
Confidence 999999998888877666666555544321110000 0000000000 00000 011 123468899999888887887
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL 413 (512)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (512)
+...+....++|.|+++..|+++.+.++...+..++.++++++.|++.||+++++....+ ................
T Consensus 264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~----~~~~~~~~~~~~~~~~ 339 (438)
T TIGR00712 264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATG----VFFMTLVTIAVIVYWM 339 (438)
T ss_pred HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH----HHHHHHHHHHHHHHHh
Confidence 777788889999999988899999999999999999999999999999999755322111 0011111111111111
Q ss_pred ccCChhHHH-HHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHH-HHHHHhhhheeecCcchhHHHHHH
Q 010343 414 SHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSV 491 (512)
Q Consensus 414 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~ig~~l~g~l~~~~g~~~~~~~~~ 491 (512)
....+.+.. ...+..+....+..........+..+++++|++.|+.+...++++ .++|.+.|.+.|+.||...+.+..
T Consensus 340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~ 419 (438)
T TIGR00712 340 NPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 419 (438)
T ss_pred cCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHH
Confidence 111222222 222222222111111111122344556789999999998888864 689999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCccc
Q 010343 492 GLYLVGTAVWNLFSTGEKV 510 (512)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~ 510 (512)
++.+++.+..+...+++|+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 420 GGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 8888888877777776664
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=275.67 Aligned_cols=380 Identities=13% Similarity=0.105 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.+....++.++...........++.+.+++|.|+.+.|++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~ 93 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA 93 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 44555555555566666566667777789999999999999999999999999999999999999999999999888876
Q ss_pred HHH---HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHH-HHHHhHHHHHhcccCch
Q 010343 185 LTP---VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 185 ~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~g~~ 260 (512)
++. +.. .+++.+++.|++.|++.+...+...+.+.+++|+++|++++|+.+...++|. .++|.+++.+.+.+||+
T Consensus 94 ~~~~~~~~~-~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~ 172 (402)
T TIGR00897 94 AFIVFGLGH-ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM 172 (402)
T ss_pred HHHHHhccC-ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence 543 221 1678888999999999988888888889999999999999999999999997 68999999999888977
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
..++......++..++..+..++.++++++.++.+. .+...+++.++++|.++...+..++.....+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (402)
T TIGR00897 173 NTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKF-----------SELGKAATILFTNPNVLLGGMVRIINTIGLFGF 241 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcch-----------hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence 666554443333333333433332211111000000 001224667889999998888888877888888
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh--ccCCh
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL--SHVDS 418 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 418 (512)
..+.|.|+++ +|++..+.+.+.+...++..+++++.|++.||+++|+... .............+... ...++
T Consensus 242 ~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~ 315 (402)
T TIGR00897 242 AVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR-----WFGGVGCGIFTLALYYIPQHFGHS 315 (402)
T ss_pred HHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-----HHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999999876 7999999999999999999999999999999999874311 01111111111111111 11222
Q ss_pred hH-HHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHH
Q 010343 419 PA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 497 (512)
Q Consensus 419 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~ 497 (512)
.+ .....++.+.+.... .+. .....+.+|+++|++.|+.+...+++..++|.+.|.+.|..|+...+++.+++.+++
T Consensus 316 ~~~~~~~~~~~G~~~~~~-~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~ 393 (402)
T TIGR00897 316 FAVALIIAIALGIFLAGY-VPL-AAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVS 393 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-HHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 32 333333344333332 232 344456778899999999999999999999999999999999999999999888887
Q ss_pred HHHHHHh
Q 010343 498 TAVWNLF 504 (512)
Q Consensus 498 ~~~~~~~ 504 (512)
.++..+.
T Consensus 394 ~~~~~~~ 400 (402)
T TIGR00897 394 AFLTAFI 400 (402)
T ss_pred HHHHHHh
Confidence 7665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=275.46 Aligned_cols=376 Identities=17% Similarity=0.138 Sum_probs=269.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+.++.+..+.+..++..++..+..+.+|. +.+++|.|+.++|++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence 34455667778888888999999999887 56889999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHh---h---cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHH
Q 010343 180 SIATALTPVAA---K---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253 (512)
Q Consensus 180 ~~~~~~~~~~~---~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 253 (512)
+++.+.+.+.. + .+++.+++.|+++|++.+...+...+++.+++|+++|++++++......+|.++|+.+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 77766554431 0 13567899999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHH
Q 010343 254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333 (512)
Q Consensus 254 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (512)
.+.+||++.+++.+++.++..+.. ...++.+++ + + + +.++++.++ ..+.......+.
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~-~--~---------------~~~~~~~~~--~~~~~~~~~~~~ 228 (399)
T PRK05122 172 YHWGGLAGLGLLIMLLALLGLLLA-RPRPAVPPV--K-G--E---------------RLPFRRVLG--RVWPYGMGLALA 228 (399)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHH-hcCCCCCCC--C-c--c---------------chhHHHHHH--HHHHHHHHHHHH
Confidence 999999999887666554433222 111111110 0 0 0 011222222 222222233344
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL 413 (512)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (512)
...+.....+++.|+.+ .|+ ...+...+...++.++++++.|++.||+++++. ......+..........
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-------~~~~~~~~~~~~~~~~~ 298 (399)
T PRK05122 229 SIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRV-------AIVSLLVEILGLLLLWL 298 (399)
T ss_pred HHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHH
Confidence 45566677788888876 465 345677778889999999999999999988732 22222222222222221
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 414 SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
..+........++.+.+.....+.......+..+++++|++.|+++....+|..+++.+.|.+.++.||+..+++.+++
T Consensus 299 -~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 377 (399)
T PRK05122 299 -APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA 377 (399)
T ss_pred -hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 2222233333333444443333333333445566789999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCccc
Q 010343 494 YLVGTAVWNLFSTGEKV 510 (512)
Q Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (512)
.+++.++...+.+++++
T Consensus 378 ~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 378 ALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHHHHhcccccc
Confidence 88887776666554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=271.66 Aligned_cols=362 Identities=15% Similarity=0.184 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
++.+..+....++...+...+.+.+|.+.+++|.++.++|++.+++.++..+++++.|++.||+|||+++..+.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 83 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS 83 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 33444444555667778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhH
Q 010343 183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV 262 (512)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 262 (512)
.+++.+.+ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.
T Consensus 84 ~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 161 (385)
T TIGR00710 84 SLGLALSN--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAI 161 (385)
T ss_pred HHHHHHHc--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 99998888 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHH
Q 010343 263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342 (512)
Q Consensus 263 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 342 (512)
|++.+++.++..+..+...+++++++++.+..+. ...+++.+++|+++...+...+..........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (385)
T TIGR00710 162 FAFLSLAGILLSALIFFILPETLPYEARIQISTY--------------FETFLLLLKSKMFWGYALIYGASFGGFFAFFS 227 (385)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHH--------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9998888777766666555554332221111110 12456778899998887777777777778888
Q ss_pred hhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH-hhc--cCChh
Q 010343 343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLS--HVDSP 419 (512)
Q Consensus 343 ~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 419 (512)
+.|.++++.+|.++.+.+.+.+...++.++++++.|++.||+++|+. .............+. ... ..+..
T Consensus 228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL-------LRMGLILFAVSAVLLEITAILGLGSW 300 (385)
T ss_pred cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHHHHHHHhccchH
Confidence 89999988889999999999999999999999999999999998843 222211111111111 111 11222
Q ss_pred HHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHH
Q 010343 420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF 487 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~ 487 (512)
........+.+.......+.......+..|++++++.++.+.....++.+.+.+.|.+.+..++...+
T Consensus 301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 368 (385)
T TIGR00710 301 AMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSL 368 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHH
Confidence 22222222222222333344444444555678999999999888876666666677655544444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=273.29 Aligned_cols=366 Identities=16% Similarity=0.096 Sum_probs=273.8
Q ss_pred HHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHH-HHHHHHHHHHHHHHH
Q 010343 111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPV 188 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~ 188 (512)
+.+++..+......+.+|. +.+++|.|+.++|++.+++.+...+.+++.|+++||+||||.++ .+.++.+++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888887 56789999999999999999999999999999999999988765 455666667777788
Q ss_pred HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHH--HHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH
Q 010343 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS--LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF 266 (512)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 266 (512)
++ +++.+++.|++.|.+.+...|...++..|+.++++|++. .+......++|.++||.+++.+.+.+|||+.|++.
T Consensus 84 ~~--~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 84 NR--NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred cc--hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 87 888888999999988888888888999998877777654 68888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
+++.++..++.++..|+.++++++..+ ..+.++.+++|.++...+..++..........++|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSYPRGAPGALT-----------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPL 224 (375)
T ss_pred HHHHHHHHHHHHHhCCCcccCcccccC-----------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHH
Confidence 888777766666655554432211100 112334567777776666666555555666778899
Q ss_pred HHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHH
Q 010343 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM 426 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
|+++.+|.++.+.+.+.....+..+++.++.|++.||+++|+.. .. +.+............++.+......
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM-------LL--AALAGVAFYTGLAADNSLWALLMLQ 295 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH-------HH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999988888788888999999999999988432 11 1111112221112222333333332
Q ss_pred HHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHh
Q 010343 427 ACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
.+.+...+...+.......+..|++++++.|+++...++|..++|.+.|.+.|..||+..|.+.+++.+++.++....
T Consensus 296 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 296 LLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 232222233344455566677787888999999999999999999999999999999999999998888877765443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=278.90 Aligned_cols=376 Identities=14% Similarity=0.120 Sum_probs=268.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
.+++.+..+++.++..+++.....+..|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
++.++.++++ +++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+..|||
T Consensus 95 ~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 95 VGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred HHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 9999999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHH---HHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC---HNWGT 337 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~ 337 (512)
+.|++..+..++. +......|++++..++ +.+...+..+........++++++++|.++...+.... .....
T Consensus 173 ~~f~i~~~~~~~~-~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (426)
T PRK12307 173 AAFFVGLLPVLLV-IYIRARAPESKEWEEA----KLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGAN 247 (426)
T ss_pred HHHHHHHHHHHHH-HHHHHHCCCChHHHHh----hhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 9998754333222 1111111221110000 00000000000001112356778888887654433222 22233
Q ss_pred HHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCC
Q 010343 338 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 417 (512)
Q Consensus 338 ~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (512)
..+..++|.|+++ .|.++.+.+.+.+...++.++++++.|++.||+++|+. ....................+
T Consensus 248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 319 (426)
T PRK12307 248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-------FSIGLLMSFLFIFPLFRIPQD 319 (426)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHHHccc
Confidence 3467788999988 59999999999999999999999999999999998832 221211111111111111112
Q ss_pred hhHHHHHHHHHHhhhh-hhhhchhhhh-hhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHH
Q 010343 418 SPAMAVLCMACSQGTD-AFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG 492 (512)
Q Consensus 418 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~ 492 (512)
... ......++.... .......... .+..+++++|+++|+.+....+++.++|.+.|++.++.|+.....+..+
T Consensus 320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~ 395 (426)
T PRK12307 320 NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA 395 (426)
T ss_pred cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 222 122222222111 1111222233 3445557899999999999999999999999999999887765443333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.79 Aligned_cols=376 Identities=14% Similarity=0.101 Sum_probs=276.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc-ccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
.++.+++..++.++.+....++++..+.+.+ ++|+|..|.+++.++..+++.+++++.|++.||+|.|+++.++.++.+
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4678888889999999999999999888776 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-----hhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh-
Q 010343 181 IATALTPVA-----AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI- 254 (512)
Q Consensus 181 ~~~~~~~~~-----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~- 254 (512)
+..++.+++ + +++.+++.|++.|++ +..++.....+++++|+++||+++|+....+++|..+++++...+.
T Consensus 112 i~~~~~~~a~~~~~~--s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~ 188 (462)
T PRK15034 112 IPCVWLGIAVQNPNT--PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF 188 (462)
T ss_pred HHHHHHHHHHcccCC--CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999988886 5 899999999999998 6688999999999999999999999998777788777666555433
Q ss_pred ----c-------------ccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHh
Q 010343 255 ----H-------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLI 317 (512)
Q Consensus 255 ----~-------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (512)
+ ..+||.++++..++.++..++.++..++.++++. + ..+....
T Consensus 189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~--~------------------~~~~~~v 248 (462)
T PRK15034 189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--S------------------IADQLPV 248 (462)
T ss_pred HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--C------------------HHHHHHH
Confidence 2 2336777777777777776666666444332111 1 1134568
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 010343 318 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 397 (512)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 397 (512)
+|+|+.|.+.+.+++.+..+.++..++|.|+++.+ +.........+..+...+.++++|+++||+|++++....
T Consensus 249 lk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~---- 322 (462)
T PRK15034 249 LQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN---- 322 (462)
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH----
Confidence 89999999999999999999999999999998854 333333334445677888999999999999998532211
Q ss_pred HHHHHhHHHH-HHHHhhccC--ChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC----------------------cch
Q 010343 398 MQSIGFLGPA-FFLTQLSHV--DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP----------------------RYS 452 (512)
Q Consensus 398 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 452 (512)
...+.+.. ......... .+.+.....++......+.......-+..+..| ++.
T Consensus 323 --~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (462)
T PRK15034 323 --FIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTET 400 (462)
T ss_pred --HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHH
Confidence 11111111 111222111 122333332222222222222233322211112 267
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhheeec-CcchhHHHHHHHHHHHHHHHHHHhcCCc
Q 010343 453 GVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 453 g~~~g~~~~~~~~g~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (512)
|.+.|+......+|+++.|.+.|...+. .++...|+...+..+++.++.+....|+
T Consensus 401 g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 401 AAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999998887 6688889988888888877766655443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=259.87 Aligned_cols=385 Identities=18% Similarity=0.201 Sum_probs=317.2
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+.+++.+++..+...+.+..+.++++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++...+.++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 45677888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 180 SIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 180 ~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
.+..+..+++.. .+++.+++++++.|++. ..+......++.+||||++|.++|++. .+++|..+..+++..+....|
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g 167 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG 167 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence 999998888762 13459999999999994 467888999999999999999999999 999999999999999999889
Q ss_pred ---chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHH
Q 010343 259 ---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNW 335 (512)
Q Consensus 259 ---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (512)
|+....+..+..++..++.++...+.++.+...++... ..++.++++++.|.+.+.++....
T Consensus 168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------~~~~~v~~~~~~W~lsllY~~tFG 232 (417)
T COG2223 168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------AQLKAVFSNKDTWLLSLLYFATFG 232 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------------hHHHHHhcCcchHHHHHHHHHHHH
Confidence 99999999888888888888887777664322222110 235678899999999999999999
Q ss_pred HHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 336 ~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
++.++..++|.|+++++|.++.++|.+...+.+.+.+.++++|+++||+|.+|.. .........+........
T Consensus 233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~-------~~~f~~~~~~~~~l~~~~ 305 (417)
T COG2223 233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT-------LAVFVGMALAAALLSLFL 305 (417)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH-------HHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999998542 222222222222222221
Q ss_pred -----CChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc-chhHHHH
Q 010343 416 -----VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKV 489 (512)
Q Consensus 416 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g-~~~~~~~ 489 (512)
..+.+.....++....+.+.......-......+++.|.+.|+...+..+|+..-|...|...+..| +...|++
T Consensus 306 ~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~ 385 (417)
T COG2223 306 TGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFML 385 (417)
T ss_pred cccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHH
Confidence 1334444444444444445555666666667778899999999999999999999999999999966 8999999
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 010343 490 SVGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ 508 (512)
...+.+++.++......++
T Consensus 386 ~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 386 LLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999888888766665544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=281.10 Aligned_cols=371 Identities=16% Similarity=0.196 Sum_probs=278.2
Q ss_pred HHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHh
Q 010343 111 SAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 190 (512)
+.++..+.+...+.+..|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 34667778888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHH-hHHHHHhcccCchhHHHHHHHH
Q 010343 191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL-AFSPFLIHRFGWPSVFYSFGSL 269 (512)
Q Consensus 191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~g~~~~f~~~~~~ 269 (512)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++ .+++.+.+..+||+.|++.+++
T Consensus 82 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (379)
T TIGR00881 82 --SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGII 159 (379)
T ss_pred --hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999 5777777888999999998888
Q ss_pred HHHHHHHHhhhccCCCCCCCCCChhhh-Hhh----hhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhh
Q 010343 270 GTVWFTVWLSKAHSSPAEDPQLRPAEK-KLI----VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344 (512)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 344 (512)
.++..++.+...++++++++..+.++. ... .++.+++...+...+++++++|.++.+.+..++.......+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS 239 (379)
T ss_pred HHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666666655554432211111000 000 000001111122345677899999998888888888888899999
Q ss_pred HHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhH-HHH
Q 010343 345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA-MAV 423 (512)
Q Consensus 345 ~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 423 (512)
|.|+++.+|++..+.+.+.+...++.++++++.+++.||..+++.... .......................+ ...
T Consensus 240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
T TIGR00881 240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL----AVFFMALIIVSLLVYWLNPAANPLMDLI 315 (379)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH----HHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 999998889999999999999999999999999999998754432110 111111111111111111112222 222
Q ss_pred HHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHH
Q 010343 424 LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF 487 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~ 487 (512)
..+..+...............+..++++||++.|+.+....+|..++|.+.|.+.|+.||+..|
T Consensus 316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 316 CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 2333333222222222223345556688999999999999999999999999999999987653
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=280.70 Aligned_cols=373 Identities=16% Similarity=0.105 Sum_probs=272.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 188 (512)
++...++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 101 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence 33445666677778888899999999999999999999999999999999999999999999999888877776655442
Q ss_pred ---HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHH
Q 010343 189 ---AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS 265 (512)
Q Consensus 189 ---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 265 (512)
....+++.+++.|++.|++.+...+...+++.+++|+++|+++.++.+...++|..+||.+++.+.+..+|++.|++
T Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 11226788889999999999988899999999999999999999999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhH
Q 010343 266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 345 (512)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 345 (512)
.++..++..++.+.. ++.++++++.++..+ .....++..+++|.++...+..++... ......++|
T Consensus 182 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p 247 (417)
T PRK10489 182 AAAGTFITLLPLLRL-PALPPPPQPREHPLR------------SLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYP 247 (417)
T ss_pred HHHHHHHHHHHHHhC-CCCCCCCcccccchH------------HHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhH
Confidence 877766655544443 332221111100000 002245667888887766655544333 456778899
Q ss_pred HHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHH
Q 010343 346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC 425 (512)
Q Consensus 346 ~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
.|+++.+|.++.+.+++.+...++.+++.++.+++.||.++++. .. .+.+..+..+......++.+.....
T Consensus 248 ~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-------l~--~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (417)
T PRK10489 248 ALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-------ML--LSTLGSFLAVGLFGLMPMWILAVLC 318 (417)
T ss_pred HHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-------HH--HHHHHHHHHHHHHHccchHHHHHHH
Confidence 99998889999999999999999999999999999998654421 11 2222222222222233333333333
Q ss_pred HHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHh
Q 010343 426 MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
.++.+...+...+......++ .+++.||+++|+++...++|..+||.+.|++.|..|+...+...+++.++..++....
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444455444 4557899999999999999999999999999999998888887776665554444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=269.59 Aligned_cols=365 Identities=14% Similarity=0.065 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT 183 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 183 (512)
+.++.++++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHH
Q 010343 184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 263 (512)
+++++.+ +++.++++|+++|++.+...+...+.+.+..++++|++++++.+...++|..+|+.+++.+.+...+...+
T Consensus 86 ~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 86 AGLGLMV--GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred HHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 9999888 89999999999999999988988888889998999999999999999999999999999987754333333
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHh
Q 010343 264 YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTW 343 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 343 (512)
. .+........+. +...+ +++.++ + +..++++.+++|.++......+.....+.....+
T Consensus 164 ~-~~~~~~~~~~~~-~~~~~-~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (381)
T PRK03633 164 V-TGLVLAAILPLL-FTRIL-NQQAEN-H-----------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGL 222 (381)
T ss_pred H-HHHHHHHHHHHH-Hhccc-CCCCCC-C-----------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3 222222211121 11111 111100 0 0123455677888776555455555556667788
Q ss_pred hHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHH
Q 010343 344 MPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV 423 (512)
Q Consensus 344 ~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
+|.|+++ .|.+..+.+.+.+...++.+++++..|++.||+++|+. .. .+............ .......
T Consensus 223 lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-------l~--~~~~~~~~~~~~~~--~~~~~~~ 290 (381)
T PRK03633 223 MPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-------LR--VQVFVVILGSIAML--SQAAMAP 290 (381)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-------HH--HHHHHHHHHHHHHh--hhHHHHH
Confidence 9999987 69999999999999999999999999999999998832 11 11111111111111 1112222
Q ss_pred HHHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHH
Q 010343 424 LCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 502 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (512)
...+.+.+.... .+..... .+..++++++...+..+...++|..+||.+.|++.|+.|+...|.+.+.+.++..+..+
T Consensus 291 ~~~l~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 291 ALFILGAAGFTL-YPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHhH-HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 223333333323 3444443 34455567788888888889999999999999999999999999998888876655444
Q ss_pred Hh
Q 010343 503 LF 504 (512)
Q Consensus 503 ~~ 504 (512)
..
T Consensus 370 ~~ 371 (381)
T PRK03633 370 RK 371 (381)
T ss_pred hc
Confidence 33
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=277.60 Aligned_cols=391 Identities=12% Similarity=0.121 Sum_probs=285.3
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHH
Q 010343 97 EEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV 176 (512)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 176 (512)
++..++|.++..+++..+........+...+|.+.+++|.+..+++++.+.+.+...++.++.|+++||+|||++++.+.
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 33445787777777777666666666788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcChHHHHH-HHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc
Q 010343 177 VWWSIATALTPVAAKLGLPFLLV-VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH 255 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 255 (512)
++.+++.+++++++ +++.+++ .|++.|++.+...+...+++.++++ ++|++++++.+.+..+|..++|.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 92 LLASLGMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999988888 7877765 5689999998777777888899994 789999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHhhhccCCCCCC--CCCChh--hhHhhhhc-cccCCCC---CCchHHHhhcChHHHHHH
Q 010343 256 RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED--PQLRPA--EKKLIVSS-CASKEPV---KTIPWGLILSKPPVWALI 327 (512)
Q Consensus 256 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 327 (512)
.+|||+.|++.+++.++..+..++..++.+.++ +...+. +.....++ ..+.... +..++ +++++|.++...
T Consensus 169 ~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 247 (455)
T TIGR00892 169 SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYL 247 (455)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHH
Confidence 999999999999887766555444433222110 000000 00000000 0000000 01112 467899999888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHHHHHHhHH
Q 010343 328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV--SKGLSVTTVRKIMQSIGFLG 405 (512)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~~~~~~~~~~~~~~ 405 (512)
+..++..........++|.|+++ .|++..+.+.+.++.+++.++++++.|++.||.. ++ +...+..+.+.
T Consensus 248 ~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~ 319 (455)
T TIGR00892 248 SGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-------VQYLFSFALLF 319 (455)
T ss_pred HHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-------HHHHHHHHHHH
Confidence 88888778877888899999987 6999999999999999999999999999999742 22 11222222222
Q ss_pred HHHHHHhhccCChhHH-HHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecC-cc
Q 010343 406 PAFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-SW 483 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~-g~ 483 (512)
.++.++.....++.+. ....++.+.+.+...........+..+++++++++|+++...++|.++||.++|.+.|.. +|
T Consensus 320 ~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~ 399 (455)
T TIGR00892 320 NGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399 (455)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence 2222222222233333 333444444444333333334445566788999999999999999999999999999986 59
Q ss_pred hhHHHHHHHHHHHHHH
Q 010343 484 DDVFKVSVGLYLVGTA 499 (512)
Q Consensus 484 ~~~~~~~~~~~~~~~~ 499 (512)
+..|.+.+++.+++.+
T Consensus 400 ~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 400 KYIFYASGSIVVSAGL 415 (455)
T ss_pred chHHHHhhHHHHHHHH
Confidence 9999888877766654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=272.11 Aligned_cols=377 Identities=16% Similarity=0.160 Sum_probs=274.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhh-----HHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT-----VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
....++++.++..+......+.+|.+.+++|.+..+ .|++.+++.++..+++++.|+++||+|||+.+..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 94 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 344556677788888888899999999999988654 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
+++.+++.+.+ +++.+++.|++.|++.+ ..+....++.+.+++++|++++++......+|..++|.+++.+.+..+|
T Consensus 95 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 171 (408)
T PRK09874 95 GIVMVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGL 171 (408)
T ss_pred HHHHHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 99988888887 89999999999999865 5677888999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHH-HHHHHHHHHHHH
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWAL-IVSHFCHNWGTF 338 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 338 (512)
++.|++.+++.++..+..+...++++++.++.++.+. .+..+.+++++++.. ....+.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T PRK09874 172 RPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHM---------------REVVTSLKNPKLVLSLFVTTLIIQVATG 236 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHH---------------HHHHHhCcCCchHHHHHHHHHHHHHHHH
Confidence 9999998888777766666555554322111111010 112234566665543 333344445555
Q ss_pred HHHHhhHHHHHHhhcCCcc---chhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 339 ILLTWMPTYYNQVLHFNLT---ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 339 ~~~~~~~~~l~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
....+++.|..+..+.... ..+.+..+.+++.+++.+..|++.||+++++.. .... ....+.......
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~-------~~~~--~~~~~~~~~~~~ 307 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL-------ITAL--IFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH-------HHHH--HHHHHHHHHHHH
Confidence 6677888888875332221 245566677788889999999999999988432 2111 122222222222
Q ss_pred CChhHHH-HHHHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 416 VDSPAMA-VLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 416 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
.+..+.. +..++.+.+.+.. .+..... ....+++++|+.+++++....+|..+||.++|.+.+..||+..|.+.+++
T Consensus 308 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~ 386 (408)
T PRK09874 308 VQTPLQLGILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGV 386 (408)
T ss_pred hccHHHHHHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHH
Confidence 2233333 3333334443333 3333333 34455678999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCcc
Q 010343 494 YLVGTAVWNLFSTGEK 509 (512)
Q Consensus 494 ~~~~~~~~~~~~~~~~ 509 (512)
.+++.++.....++++
T Consensus 387 ~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 387 VLFNAVYSWNSLRRRR 402 (408)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888777665544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=274.42 Aligned_cols=371 Identities=15% Similarity=0.145 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT 183 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 183 (512)
+.++.++++.++..++...+.+.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34667777888889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHH
Q 010343 184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 263 (512)
+++.+.+ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+.+..|||+.|
T Consensus 90 ~~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f 167 (471)
T PRK10504 90 LFCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIF 167 (471)
T ss_pred HHHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHH
Confidence 8888887 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHh-----------hhhc--------------------------cccC
Q 010343 264 YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL-----------IVSS--------------------------CASK 306 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------------------------~~~~ 306 (512)
.+...+..+..+......++.+.+..+.+...... .... .++.
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN 247 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99887776666655555554332222111110000 0000 0001
Q ss_pred CCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 010343 307 EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVS 386 (512)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~ 386 (512)
.+....+. ++++||.++..++..++..........+.|.|++..+|.++.+.++......++.+++.++.+++.||+++
T Consensus 248 ~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~ 326 (471)
T PRK10504 248 NNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGY 326 (471)
T ss_pred CCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 11112233 47899999988888888888877778889999988789999999999999999999999999999999998
Q ss_pred cCCchhhHHHHHHHHHhHHHHHHHHhh-ccCChhHHH-HHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHh
Q 010343 387 KGLSVTTVRKIMQSIGFLGPAFFLTQL-SHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV 464 (512)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 464 (512)
|+. ......+.......... ...+..+.. ...++.+.+.+...........+..+++.+|.++|+.+....
T Consensus 327 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 399 (471)
T PRK10504 327 RRV-------LVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ 399 (471)
T ss_pred hHH-------HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH
Confidence 842 22222212211111111 112222222 222333333333333333344455667899999999999999
Q ss_pred HHHHHHHHhhhheeecCcch
Q 010343 465 LAGVFGTAATGYILQHGSWD 484 (512)
Q Consensus 465 ~g~~ig~~l~g~l~~~~g~~ 484 (512)
+|..+|+.+.|.+.+..|+.
T Consensus 400 ~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 400 LSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999999999998887664
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=268.62 Aligned_cols=369 Identities=15% Similarity=0.126 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
+.+..+.++.++..+......+.+|. +.+++|.|..++|++.+++.++..++++++|+++||+|||+++..+.+...++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 34555556667777778888888886 57899999999999999999999999999999999999999999988877665
Q ss_pred HHHHHHH---h---hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 183 TALTPVA---A---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 183 ~~~~~~~---~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
.+..... + ..+++.+++.|+++|++.+...+...+++.+++|+++|++++++.+.+..+|..+||++++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432211 1 116788999999999999998999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHH
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG 336 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (512)
+||++.+.+..+..++..... ...++.+++++ .+ .+.++..+ .++...+..++....
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~------------------~~~~~~~~--~~~~~~~~~~l~~~~ 231 (392)
T PRK12382 175 FGFAALALTTMVLPLLAWAFN-GTVRKVPAHAG--ER------------------PSLWSVVG--LIWKPGLGLALQGVG 231 (392)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HhccCCCCCcc--cC------------------chHHHHHH--HHHHhHHHHHHHHHH
Confidence 999988776554443332221 11121111100 00 01111111 122222222333445
Q ss_pred HHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccC
Q 010343 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 416 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (512)
......+.|.|+++ .|++ +.+......+++.++++++.|++.||+++|+.... ...+.......... ..
T Consensus 232 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~-------~~~~~~~~~~~~~~-~~ 300 (392)
T PRK12382 232 FAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIV-------SLLVETVGLLLLWL-AP 300 (392)
T ss_pred HhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHH-------HHHHHHHHHHHHHH-cc
Confidence 55667788888877 4654 35666677788889999999999999998864322 11111111111111 22
Q ss_pred ChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHH
Q 010343 417 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLV 496 (512)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~ 496 (512)
+.........+.+.+.....+.......+..+++++|++.|+.+....+|..++|.+.|++.|+.||+..|.+.+++.++
T Consensus 301 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~ 380 (392)
T PRK12382 301 TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVL 380 (392)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 22222333333333333333333333445566789999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhcC
Q 010343 497 GTAVWNLFST 506 (512)
Q Consensus 497 ~~~~~~~~~~ 506 (512)
+.++.+...+
T Consensus 381 ~~~~~~~~~~ 390 (392)
T PRK12382 381 GIIVTILSFR 390 (392)
T ss_pred HHHHHHhhcc
Confidence 8777665544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=269.64 Aligned_cols=355 Identities=14% Similarity=0.092 Sum_probs=270.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 188 (512)
+..+.++..++.....+.+|.+.++++.++.++|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888999999999999999999999999999999999999999999999999999888887777666
Q ss_pred Hhh---cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHH
Q 010343 189 AAK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS 265 (512)
Q Consensus 189 ~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 265 (512)
... .+++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|.++||.+++.+.+..|||+.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 541 16788999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHH-Hhh
Q 010343 266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWM 344 (512)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~ 344 (512)
.++..++..+..+...+++++++++.+.+++. . ++....++..+++|.++...+..++......... .+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (365)
T TIGR00900 164 DAVGFAISALLIVSVRIPELAASEIQALSNAV-L--------RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALF 234 (365)
T ss_pred HHHHHHHHHHHHHhcccccCCCccccccchhH-H--------HHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87766665554444333222211111100000 0 0012346678899999888888777777776666 788
Q ss_pred HHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCC-hhHHH-
Q 010343 345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMA- 422 (512)
Q Consensus 345 ~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 422 (512)
|.|.++.+|.+..+.+.+.....++.+++.++.+++.||.++++. . ..+....+.........+ +.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL-------M--TGAIFVIGLAILVVGLTPPNFPLFL 305 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH-------H--HHHHHHHHHHHHHHHhhchhHHHHH
Confidence 999888789999999999999999999999999999999988732 2 222222222222222222 23333
Q ss_pred HHHHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 423 VLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
+..++.+.+... ..+..... .+..++++||++.|+.+...+++..++|.+.|.+.|+.|
T Consensus 306 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 306 VLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333443333 34444444 455566889999999999999999999999999988654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=266.16 Aligned_cols=370 Identities=11% Similarity=0.023 Sum_probs=271.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
..+.+..++..+....+.+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||+++..+.++.+++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 98 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT 98 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 34444556677788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH
Q 010343 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF 266 (512)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 266 (512)
.+++ +++.++++|+++|++.+...+...+++.|+++++++++++++......+|..+||.+++.+.+..|||+.|++.
T Consensus 99 ~~a~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 99 LFTT--SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred HHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9988 99999999999999988777777888999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
+++.++..+..++..|++++++++....+ . ...+++++++||.++...+..++.......+..+.|.
T Consensus 177 ~~~~~i~~~~~~~~lp~~~~~~~~~~~~~-~------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~ 243 (413)
T PRK15403 177 AVMGLIAFVGLLLAMPETVKRGAVPFSAK-S------------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPV 243 (413)
T ss_pred HHHHHHHHHHHHHhCCCCccccCCCCChH-H------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 88887776655554555432211110000 0 0235678899999999888888888888888888999
Q ss_pred HHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHH-HHHH
Q 010343 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM-AVLC 425 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 425 (512)
++++.+|.++.+.++.......+.+++..+.+++.+|..+++..... ..+...+.+........ ..+..+. ....
T Consensus 244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--~~~~~ig~~l~~~~~~~--~~~~~~~~~~~~ 319 (413)
T PRK15403 244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRA--VPIQLVGLALLIVGNLL--WPHVWLWSVLGT 319 (413)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH--HHHHHHHHHHHHHHHHH--ccccHHHHHHHH
Confidence 99998899999999998888888888888888766544333221100 01111121111111111 1222222 2222
Q ss_pred HHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHH
Q 010343 426 MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 497 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~ 497 (512)
.+.+.+.+. ..+..........+..+|++.|+.+.....+..+++...|++.++. -...|...++++.+.
T Consensus 320 ~l~~~G~~~-~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 320 SLYAFGIGL-IFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG-GRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHH-HhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHH
Confidence 223333332 3333332222222335799999999999999999999999988774 455555444444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=278.08 Aligned_cols=386 Identities=15% Similarity=0.141 Sum_probs=266.0
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+++|+.+..+++.+++..++.....+.+|.+.+++|.|+.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
+++.+++.+.+ +++.+++.|++.|++.+...+....++.|.+|+++|++++++......+|..+++.+.+.+.+.++|
T Consensus 96 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 96 SVGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 99999999988 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-ChhhhHhhhhccccCCCCCCchH----------HHhh----------
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL-RPAEKKLIVSSCASKEPVKTIPW----------GLIL---------- 318 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---------- 318 (512)
|+.|++.++..++. ++.....|+.++.+++. .+.+.+...+.....+.. .... ...+
T Consensus 174 ~~~f~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
T PRK03893 174 RALFFIGILPIIFA-LWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHR-IINILLTLAAAAALWFCFAGNLQNAAIV 251 (496)
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCCchhhhhhccccccchhHHHHHhcchhH-HHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 99998754433332 22222223222110000 000000000000000000 0000 0000
Q ss_pred ---------------------cChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHH
Q 010343 319 ---------------------SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLG 377 (512)
Q Consensus 319 ---------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 377 (512)
+.+....+.+..+...........++|.|+++.+|++..+.+.+.+...++.++++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~ 331 (496)
T PRK03893 252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG 331 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000011111111112345788999987789999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHH-HHhhhhhhhhchhhhhh-hhhcCcchhhH
Q 010343 378 GWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNH-QDIAPRYSGVL 455 (512)
Q Consensus 378 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~~ 455 (512)
|++.||+++|+. .......................+....... .+....+. ........ +..+++++|++
T Consensus 332 g~l~dr~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 403 (496)
T PRK03893 332 GFLGDWLGTRKA-------YVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAG 403 (496)
T ss_pred HHHHHHhcchHH-------HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcc
Confidence 999999998842 2222111111111111112222222222222 22222222 22333344 44455789999
Q ss_pred HHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHH
Q 010343 456 LGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 497 (512)
Q Consensus 456 ~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~ 497 (512)
+|+.+....+|..+||.+.|.+.|+.|+...+...++++.+.
T Consensus 404 ~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~ 445 (496)
T PRK03893 404 LGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV 445 (496)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988876655444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=280.27 Aligned_cols=400 Identities=18% Similarity=0.161 Sum_probs=273.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCC--------hhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWN--------PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL 172 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 172 (512)
+.+...+++.++.++..++...+.+..+.+..+++.+ ..+.|++.+++.++..++++++|+++||+|||+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~ 104 (481)
T TIGR00879 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL 104 (481)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence 3444444555566777788888888888888888777 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHH-
Q 010343 173 GFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS- 250 (512)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~- 250 (512)
.++.++.+++.+++.+... .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 184 (481)
T TIGR00879 105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS 184 (481)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999888866441 14568999999999999999999999999999999999999999999999999999999
Q ss_pred --HHHhcccCchhHHHHHHHHHHHHHHHHhhhccCCCCCC--CCCChhhhHhhhhccccC--------------------
Q 010343 251 --PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED--PQLRPAEKKLIVSSCASK-------------------- 306 (512)
Q Consensus 251 --~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------- 306 (512)
+...+..+||+.|++.++..++..+.. ++.++.+... ++..+...+...+....+
T Consensus 185 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (481)
T TIGR00879 185 GKVSLNNTLGWRIPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIE 263 (481)
T ss_pred HhhcCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 666677899999999666555544433 3444443210 000000000000000000
Q ss_pred CCCCCchHHHhhc------ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHH
Q 010343 307 EPVKTIPWGLILS------KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWI 380 (512)
Q Consensus 307 ~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l 380 (512)
.......++..++ .+.++...+..+...........+.|.++++ .|++..+.+.......++.+++.++.|++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 342 (481)
T TIGR00879 264 KRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFL 342 (481)
T ss_pred HhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011222332 1222222333333333334455666777665 79999888999999999999999999999
Q ss_pred HHHHHhcCCchhhHHHHHHHHHhHHHHHHHHh---hccCC------hhHHHHHHHHHHhhhhhhhhchhhhhhhhhc-Cc
Q 010343 381 ADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ---LSHVD------SPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PR 450 (512)
Q Consensus 381 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 450 (512)
.||+++|+... ........+..... ....+ .........++..+......+.......+.. ++
T Consensus 343 ~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (481)
T TIGR00879 343 VDRFGRRPLLL-------IGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS 415 (481)
T ss_pred HHHhcchHHHH-------HHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence 99999884322 11111111111111 11111 2222333333333333333344455545554 47
Q ss_pred chhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcCCcc
Q 010343 451 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 509 (512)
Q Consensus 451 ~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (512)
+|+++.|+.+...++|.+++|.+.|.+.++.+|...|++.+++++++.++...+.++.|
T Consensus 416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 416 LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 89999999999999999999999999999999999999888888887776665544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=270.99 Aligned_cols=388 Identities=14% Similarity=0.121 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhh----HHH--HHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT----VGL--IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV 176 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 176 (512)
++.+....++.++.+++...+....|.+.++++.+..+ ++. +.++..++..++++++|+++||+|||+++.++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677778899999999999999999999998643322 222 247788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcChHH--------HHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHh
Q 010343 177 VWWSIATALTPVAAKLGLPF--------LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA 248 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~--------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 248 (512)
++++++.+++++++ ++.. ++++|+++|++.+...+...+++.|++|+++|++..++...+..+|..+|+.
T Consensus 95 ~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~ 172 (490)
T PRK10642 95 VIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG 172 (490)
T ss_pred HHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 7653 8899999999999999999999999999999999999999888888888887
Q ss_pred HHHHHh--------cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcC
Q 010343 249 FSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK 320 (512)
Q Consensus 249 ~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
+...+. ..+|||+.|++.+++.++.. +.....+|+++.....++.++. +.+...+.+..++++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 247 (490)
T PRK10642 173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETPAFQQHVDKLEQG----DREGLQDGPKVSFKEIATK 247 (490)
T ss_pred HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChhHHHHHHhhhhh----ccccccccccCCHHHHHHH
Confidence 665443 25799999998765555433 3333444443211000000000 0000001123356666542
Q ss_pred -hHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Q 010343 321 -PPVWA-LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIM 398 (512)
Q Consensus 321 -~~~~~-~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 398 (512)
++.+. .....++....++.+..++|.|+++.+|++..+.++......++.+++.++.|+++||+|||+. ..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-------~~ 320 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF-------VI 320 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HH
Confidence 23222 2233344556777888899999988789988888888888889999999999999999999842 21
Q ss_pred HHHH-hHHHHHHHHhhccCChhHHHH-HHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhh
Q 010343 399 QSIG-FLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGY 476 (512)
Q Consensus 399 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~ 476 (512)
.... +.............+...... ..++.+.+.............+..+++.||++.|+.+....+++.++|.+.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~ 400 (490)
T PRK10642 321 LGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAW 400 (490)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111111111111222222222 22222222222211222222334566889999998666677778999999999
Q ss_pred eeecC-cchhHHHHHHHHHHHHHHHHHHh
Q 010343 477 ILQHG-SWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 477 l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
+.+.. ++...+++..+..+++.+..++.
T Consensus 401 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 401 LVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 98764 35555555555555554444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=261.33 Aligned_cols=359 Identities=14% Similarity=0.137 Sum_probs=274.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
+.++.+.+.....++..+....+.+.+|.+.+++|.|+.+.+++.+++.++..++++++|+++||+|||+.+..+.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~ 84 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI 84 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 35666666666676777788888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
++.+++.+.+ +++.+++.|++.|++.+...+....+..|.++++++++++++.+.+..++..++|.+++.+.+..|||
T Consensus 85 ~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 162 (394)
T PRK11652 85 LGTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWR 162 (394)
T ss_pred HHHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 9998888888 89999999999999998888888889999999999999999999999999999999999999989999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
+.|++.+++.++..++.....+|+++++++.. + ...++++.+++|.++...+..+........+
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARWMPETRPADARRT--R--------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVF 226 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCccccchh--H--------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999887776665555555554432221111 1 0234667888998887776666666666666
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh--ccCCh
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL--SHVDS 418 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 418 (512)
..+.+.++++.+|.+..+.+++.....++.+++..+.+++.||.+++ .................. .....
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWFGVMN 298 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77788899888899999999998888899999999999999998843 111111222221211111 11122
Q ss_pred hHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchh
Q 010343 419 PAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD 485 (512)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~ 485 (512)
.+.......+.+...+...+.......+..|+++|++.++.+....+|..+++.+.|.+.+...+..
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 365 (394)
T PRK11652 299 VWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSL 365 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence 2333333333333333444555555555667889999999999999999999999999877654443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=279.27 Aligned_cols=367 Identities=16% Similarity=0.210 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT 183 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 183 (512)
+.+..++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 35667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHH
Q 010343 184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 263 (512)
+++++++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++.+++|||+.|
T Consensus 82 ~~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 82 LLCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred HHHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 9999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCC-ChhhhH-----------hhhhcc---------------------------c
Q 010343 264 YSFGSLGTVWFTVWLSKAHSSPAEDPQL-RPAEKK-----------LIVSSC---------------------------A 304 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~---------------------------~ 304 (512)
++.+.+.++..++..+..+++++++.+. +..... ...+.. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE 239 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9988887776666655555433222111 100000 000000 0
Q ss_pred cCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010343 305 SKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 384 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 384 (512)
...++...+ .+.+++|.++...+..++..+.......++|.|+++.+|.++.+.++......++.+++.++.|++.||+
T Consensus 240 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~ 318 (485)
T TIGR00711 240 LTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI 318 (485)
T ss_pred HcCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000111112 3467888888888888888888888889999999998999999999999999999999999999999999
Q ss_pred HhcCCchhhHHHHHHHHHhHHHHHHHHh--hccCChhH-HHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHH
Q 010343 385 VSKGLSVTTVRKIMQSIGFLGPAFFLTQ--LSHVDSPA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNT 461 (512)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 461 (512)
++|+. ......+...+..+.. .......+ ......+.+.+.+....+......+..+++++|++.|+.+.
T Consensus 319 ~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 391 (485)
T TIGR00711 319 DPRKL-------VTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNF 391 (485)
T ss_pred CcHHH-------HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHH
Confidence 98832 2222222222222222 11122222 33333344444444444555555566777899999999999
Q ss_pred HHhHHHHHHHHhhhheeec
Q 010343 462 AGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 462 ~~~~g~~ig~~l~g~l~~~ 480 (512)
...+|+.+|+.+.|.+.++
T Consensus 392 ~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 392 TRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=265.46 Aligned_cols=373 Identities=14% Similarity=0.160 Sum_probs=270.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 181 (512)
....+..+.+.+++..+......+.+|.+.+++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44556777777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-c-
Q 010343 182 ATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-R- 256 (512)
Q Consensus 182 ~~~~~---~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~- 256 (512)
+.+++ .+++ +++.++++|+++|++.+...+..+.++.++.++++|.+.+++.+..+.+|..+++.+++.+.. .
T Consensus 104 ~~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 104 GAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99775 3456 899999999999999999999999999998777777778999999999999999999876541 0
Q ss_pred ------------------------cCchhHHHHHHHHH-HHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCC
Q 010343 257 ------------------------FGWPSVFYSFGSLG-TVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKT 311 (512)
Q Consensus 257 ------------------------~g~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (512)
.+||++|+....+. ++..++.....|+.+.++. .+ ++ .....
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~--~~-~~----------~~~~~ 248 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--SD-AK----------QGSFS 248 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cc-cc----------ccchh
Confidence 24666665433333 2322222222222111110 00 00 00012
Q ss_pred chHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 010343 312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY-NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLS 390 (512)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 390 (512)
.++++++++|.++...+..++....+.....|.+.|+ ++.+|+++.+.++.+....++.++++++.+++.||+++|+.
T Consensus 249 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~- 327 (438)
T PRK10133 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV- 327 (438)
T ss_pred hhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-
Confidence 2356788999988877777777778887888889885 56689999999999999999999999999999999998843
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHH
Q 010343 391 VTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG 470 (512)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig 470 (512)
......+....+.+... . +.......+.+++.+.+ ...+.......+..+++.+.+.++.. ...+|+.++
T Consensus 328 ------l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~glg~~-~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~ 397 (438)
T PRK10133 328 ------LAAYALIAMALCLISAF-A-GGHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIV 397 (438)
T ss_pred ------HHHHHHHHHHHHHHHHH-c-CChHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhhccchhHHh-HHhccchHH
Confidence 22222111111122111 1 22222333334444444 44555555555556666778888876 455789999
Q ss_pred HHhhhheeecCc-chhHHHHHHHHHHHHHHH
Q 010343 471 TAATGYILQHGS-WDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 471 ~~l~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 500 (512)
|.+.|.+.|..| .+..|++..++.+.....
T Consensus 398 ~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 398 TPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 999999999987 778887666555544433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=263.71 Aligned_cols=360 Identities=10% Similarity=0.004 Sum_probs=270.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHH----HHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL----GFGVVWWSIATA 184 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~~~~~~~~ 184 (512)
+.+.++..+.......|++|.+.+++|.|..++|++.+++.+...++++++|+++||+||+... ..+..+..+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 5566777777788899999999999999999999999999999999999999999999985433 222222222 2
Q ss_pred HHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHH
Q 010343 185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264 (512)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 264 (512)
.+.+++ +++.+++.|+++|.+.+...|...++..++ +++|++.+|......++|.+++|++++.+.+.+|||..|.
T Consensus 87 ~~~~~~--~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 87 FSAGAH--NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred HHHhhh--hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 333456 789999999999999988889988887664 5788999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhh
Q 010343 265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 344 (512)
+.+++.++. ++.....++.++++++ ++ + +..+..++++++|+|+++.+.+..++.......+..+.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-~-----------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~ 228 (382)
T TIGR00902 163 ILTAGLAFM-LIGFLIKPTIPPKDAI-PE-D-----------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS 228 (382)
T ss_pred HHHHHHHHH-HHHHHcCCCCCCCccc-cc-c-----------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876553332 2233333321111111 00 0 00112346788999999999999999889999999999
Q ss_pred HHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHH
Q 010343 345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL 424 (512)
Q Consensus 345 ~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (512)
|.|+++ .|.+..+.|.+.+...++.+++..+.+++.||++.|+ .+..+.+...+........++.+....
T Consensus 229 ~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T TIGR00902 229 AIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD---------LLLISAIACVGRWAIIGAIEAFPLIFL 298 (382)
T ss_pred HHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH---------HHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 999987 7999999999999999999999999999999999883 334444444444444444555554444
Q ss_pred -HHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHH-HHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHH
Q 010343 425 -CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSN-TAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 425 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 500 (512)
..+.+..++.. .+....+.++.+++++++.+++++ ....+|..++|.++|+++|+.|+ ..|+..+++.+++.++
T Consensus 299 ~q~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 299 LQILHCGTFAVC-HLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 44445444444 444555555556678899999987 45679999999999999999986 6777777777766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.43 Aligned_cols=346 Identities=26% Similarity=0.448 Sum_probs=262.5
Q ss_pred HHHHHHHhhhhhhhhhhhh-hhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q 010343 110 FSAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 188 (512)
+++.++..++.....+.+| .+.+++|.+..++|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 5667788888888999999 899999999999999999999999999999999999999999999999999999666666
Q ss_pred HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHH
Q 010343 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268 (512)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 268 (512)
++ +.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++.+.+..+||+.|++.++
T Consensus 82 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 82 AS--NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp HC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred hh--hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 66 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCc-hHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010343 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTI-PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 347 (512)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 347 (512)
+.++..++.....+++++++++.++.+++ ++++.... .++.++++|.+|.+.+..++..........++|.|
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence 98888775444444333322222211110 00000112 26677778877755666666666778899999999
Q ss_pred HHHhhcCC-ccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCCh-hHHHHHH
Q 010343 348 YNQVLHFN-LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDS-PAMAVLC 425 (512)
Q Consensus 348 l~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 425 (512)
+.+.+|++ ..+.+.+.+...+..++++++.|++.||+++++ ...............+......++ .+.....
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR------RLLIAILLLILGALGLLLLPFSSSPVWLIIAL 306 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88889999 789999999999999999999999999988762 112222222222223222222222 3333444
Q ss_pred HHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHH
Q 010343 426 MACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGT 471 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~ 471 (512)
++.+.+. +...+...... +..+++++|++.|+.+...+++..+||
T Consensus 307 ~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 307 FLIGFGF-GIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHH-HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4445543 44444444444 555668999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=264.90 Aligned_cols=385 Identities=16% Similarity=0.160 Sum_probs=262.9
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhh-hhccc--CCChhhHHHHH-----HHHHHHHHHHHhhhhHhHhhcCChHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEF--NWNPATVGLIQ-----SSFFWGYLLTQIAGGIWADTVGGKAV 171 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~g~~~-----~~~~~~~~~~~~~~g~l~dr~g~r~~ 171 (512)
.++++.+...+++.++.+++...+....|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 345677888888999999999998887765 45555 66666 45553 34556677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChH--------HHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHH
Q 010343 172 LGFGVVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS 243 (512)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 243 (512)
+.++.++++++.+++++++ ++. .++++|+++|++.+...+....++.|++|+++|++..+..+.+..+|.
T Consensus 97 l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999998 765 588899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHh--------cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHH
Q 010343 244 VTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWG 315 (512)
Q Consensus 244 ~~g~~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (512)
.++..+...+. +.+|||+.|++.+++.++.. ......+|+++.. +...+ . ++.+.+....+
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~~es~~~~----~~~~~-----~-~~~~~~~~~~~ 243 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGMEESAEFE----QQQHE-----Q-AAAKKRIPVIE 243 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhCCCChhHH----HHHhh-----c-ccccccCCHHH
Confidence 99988777665 25799999998776654422 2222222222110 00000 0 00000111233
Q ss_pred HhhcChHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhH
Q 010343 316 LILSKPPVWALIV-SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTV 394 (512)
Q Consensus 316 ~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 394 (512)
.++++|+.+...+ ..++.....+....+.|.|+++.+|++......+....++..+++.++.|+++||+++|+..
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~---- 319 (438)
T PRK09952 244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY---- 319 (438)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----
Confidence 4667777666544 34445566777888999999888898887665566666778888899999999999988432
Q ss_pred HHHHHHHHhHHHH-H-HHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHH-hHHHHHH
Q 010343 395 RKIMQSIGFLGPA-F-FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAG-VLAGVFG 470 (512)
Q Consensus 395 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~-~~g~~ig 470 (512)
.....+.... . ........+..+......++.........+....+..+. +++.|+++.|+.+... .+++.++
T Consensus 320 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~ 396 (438)
T PRK09952 320 ---ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFT 396 (438)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHH
Confidence 1111111111 1 111111222233333233332233333334444555554 4578898999866554 5899999
Q ss_pred HHhhhheeec--CcchhHHHHHHHHHHHHHHHHHHhc
Q 010343 471 TAATGYILQH--GSWDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 471 ~~l~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
|.+.|++.|. .+|...+.+.+++.+++.+..+..+
T Consensus 397 p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 397 PFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999884 3578888888888887777665553
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=263.96 Aligned_cols=372 Identities=12% Similarity=0.016 Sum_probs=268.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
..++++.++..++...+....+.+.++++.++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 44567777777776667777777789999999999999999999999999999999999999999999999999888877
Q ss_pred HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH
Q 010343 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF 266 (512)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 266 (512)
.+.. +. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.++|.+.+. .|+..+.+.
T Consensus 86 ~~~~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~ 159 (393)
T PRK11195 86 LFGI--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVC 159 (393)
T ss_pred HHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7766 43 67899999999999999999999999999999999999999999999999999999885 477777766
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
+...++..+.. ...|+.+.++++.+.+..... ++ ....++.++++|.+.......++...........+|.
T Consensus 160 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (393)
T PRK11195 160 ALIYLLAALFN-LFIPRLGARRPGQSWNPIALL-RD-------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLA 230 (393)
T ss_pred HHHHHHHHHHH-hcCCCCcccccccCCCHHHHH-HH-------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544443333 334443322111111110000 00 0123456788888776665555555555666677788
Q ss_pred HHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHH-H
Q 010343 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-C 425 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 425 (512)
|+++.+|.++.+.|.+.+..+++.++++++.+++.||.++++.. . .++.... ........++.+.... .
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~-------~--~g~~~~~-~~~~~~~~~~~~~~~~~~ 300 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL-------P--AGILMGL-VVLLMALQHSLLPAYPLL 300 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH-------H--HHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 88888999999999999999999999999999999987776422 1 1111111 1111122233333333 3
Q ss_pred HHHHhhhhhhhhchhhhhhhhhcCc-c-hhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHH
Q 010343 426 MACSQGTDAFSQSGLYSNHQDIAPR-Y-SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 503 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (512)
++.+.+.+....+ ..+..++.+|+ . +|++.|+.+...+++..++..+.+.+ +..|.+..+.+.+...+++..+...
T Consensus 301 ~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 301 ILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 44444555664 3 69999999999999999999999965 6778888877766666666555544
Q ss_pred hc
Q 010343 504 FS 505 (512)
Q Consensus 504 ~~ 505 (512)
++
T Consensus 379 ~~ 380 (393)
T PRK11195 379 WR 380 (393)
T ss_pred HH
Confidence 43
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=260.94 Aligned_cols=368 Identities=14% Similarity=0.141 Sum_probs=267.0
Q ss_pred hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 010343 118 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL 197 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (512)
+...++.+.+|.+.+++|.|+.+++++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+.+ +++.+
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~ 82 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQL 82 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHH
Confidence 4556777889999999999999999999999999999999999999999999999999999999999999888 89999
Q ss_pred HHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHH
Q 010343 198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277 (512)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 277 (512)
++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+|++.|++.+++.++..++.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877776666
Q ss_pred hhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCcc
Q 010343 278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT 357 (512)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 357 (512)
....+++++++++.+.+.++ ...++++.+++|.++...+..++.......+..+.|.++.+.+|+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 230 (377)
T PRK11102 163 FFFIPETLPKERRQPFHLRT------------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQ 230 (377)
T ss_pred HHhCCccCcccccCCCChHH------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHH
Confidence 55555543222111100000 012456778899888877777777677777778888888887899999
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-HHHHHHHHhhc-cCChhHHHHHHHHHHhhhhhh
Q 010343 358 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQLS-HVDSPAMAVLCMACSQGTDAF 435 (512)
Q Consensus 358 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 435 (512)
+.+.+.....++.++++++.+++.||+++|+... ....+ ......+.... .....+...............
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T PRK11102 231 NFGYYFALNIVFLFVMTIINSRFVRRVGALNMLR-------FGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSM 303 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999884322 11111 11111111111 111222222222222222222
Q ss_pred hhchhhhhhhhhcCcchhhHHHHHHHHH-hHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcCCc
Q 010343 436 SQSGLYSNHQDIAPRYSGVLLGLSNTAG-VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 436 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (512)
..........+..|+++|++.++.+... .+|..+++.+.+.. +. ++...+...+++.+++.++.++..+++
T Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T PRK11102 304 ISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAP-FT-SAWPMVWSMAFCSILSILFYLYASRPK 375 (377)
T ss_pred hhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhcc-CC-ChHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2333334445566788999999987664 46667777665443 22 233333444444455544444444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=260.30 Aligned_cols=367 Identities=16% Similarity=0.100 Sum_probs=251.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHH-HHHHHHhhhhHhHhhcCChHHH-HHHHHHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVL-GFGVVWWSIAT 183 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~ 183 (512)
....+..++..+......+.+|. +.+++|.|++++|++.+...+ +..++++++++ .||+|+||.+ ..+.++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 33444466777777777787777 578899999999999877655 55555555555 9999999875 45566666777
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcch--hHHHHHHHHhhhhHHHHHHhHHHHHhcccCchh
Q 010343 184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261 (512)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 261 (512)
.+.++++ +++.+++.+.+.|...+...|...+++.++.++++| +...++.+.+.++|.++||++++.+.+++|||.
T Consensus 97 ~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~ 174 (393)
T PRK15011 97 TLFAWNR--NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTV 174 (393)
T ss_pred HHHHHhh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHH
Confidence 7777777 787776666555555567788888988888766655 345688899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcC-hHHHHHHHHHHHHHHHHHHH
Q 010343 262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 262 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 340 (512)
.|++.+++.++..++.+...|+.++++++..+ +.+ . ..++ +..+.......+.......+
T Consensus 175 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T PRK15011 175 MYLSAAVAFIVCGVMVWLFLPSMRKELPLATG-TLE---------------A---PRRNRRDTLLLFVICTLMWGTNSLY 235 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccCCCCccccc-ccc---------------c---cccccccHHHHHHHHHHHHHHHHHH
Confidence 99999888877766666656654432221100 000 0 0112 22333333334444555566
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhH
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 420 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
..+.|.|+++.+|++..+.+.+.+...++.+++.++.|+++||+++|+. ... +.......+......+..+
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~-------~~~--~~~~~~~~~~~~~~~~~~~ 306 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL-------MRV--AAVAGVCFYAGMLMAHSPA 306 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-------HHH--HHHHHHHHHHHHHHHhhHH
Confidence 6789999988889999999998888888888999999999999998842 111 1111111111111122333
Q ss_pred HHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHH
Q 010343 421 MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 500 (512)
.......+.....+...........+..|+++|++.++++...++|..++|.++|.+.|+.||+..+.+.+++.+++.++
T Consensus 307 ~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 307 ILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33322222222222222233344566677789999999999999999999999999999999999999888888777766
Q ss_pred HHHh
Q 010343 501 WNLF 504 (512)
Q Consensus 501 ~~~~ 504 (512)
.+..
T Consensus 387 ~~~~ 390 (393)
T PRK15011 387 LLRI 390 (393)
T ss_pred HHhh
Confidence 5544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=258.88 Aligned_cols=354 Identities=15% Similarity=0.136 Sum_probs=265.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 188 (512)
..+..++..+....+.+.+|.+.+++|.++.++|++.+++.++..++++++|+++||+|||+.+..+.++.+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 90 (401)
T PRK11043 11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW 90 (401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 33334555667788888889999999999999999999999999999999999999999999999999999999988888
Q ss_pred HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHH
Q 010343 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268 (512)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 268 (512)
.+ +++.+++.|++.|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+.+|||+.|++.++
T Consensus 91 ~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~ 168 (401)
T PRK11043 91 VE--SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFA 168 (401)
T ss_pred hc--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 88 8999999999999998888888889999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010343 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348 (512)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 348 (512)
+.++..+..+...+++++++ + +++ ..++++.+++|.++...+...+.......+..+.|.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 230 (401)
T PRK11043 169 ITLLLILPTLRLKPSKKARK-Q--SQD---------------ALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL 230 (401)
T ss_pred HHHHHHHHHHHcCCCCCccc-c--chH---------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 87776665554443322111 0 000 22466788888887766666666666667778889888
Q ss_pred HHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHH-HHH
Q 010343 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMA 427 (512)
Q Consensus 349 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 427 (512)
++ +|++..+.++......++.++++++.+++.||+++++.... ......+......+......+..+.... ...
T Consensus 231 ~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (401)
T PRK11043 231 EQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPW----LLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV 305 (401)
T ss_pred HH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH----HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 76 79999999998888888999999999999999988742110 1111111111111111111223332332 233
Q ss_pred HHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHH
Q 010343 428 CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK 488 (512)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~ 488 (512)
.+.+.+ ...+.......+..|+++|++.|+.+.....+...++.+.|.+.+.......+.
T Consensus 306 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 365 (401)
T PRK11043 306 MAAANG-AIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGSV 365 (401)
T ss_pred HHHHHH-HHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHH
Confidence 333333 333444444444457789999999999999999999999999988654444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=265.29 Aligned_cols=380 Identities=17% Similarity=0.169 Sum_probs=299.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT 183 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 183 (512)
+.+-.++.+.++..++..+....++.+..+..-|+..++++.++..+..++..+++|.++||++|||+++.+.++.++..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 45666778888999999999999999888888999999999999999999999999999999999999999998877655
Q ss_pred HHHHHH---hhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 184 ALTPVA---AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 184 ~~~~~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
+..++. ...+.+.+++..++.|++.+...|+.++++.+.+|+++..+++++.+...++..++||.++|.+...+|..
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~ 169 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA 169 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 444332 22367889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
+.|.+.++..++........+++.++++. .++...+ ..+..++.+.++|.+...++..++..+....+
T Consensus 170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~-~~e~~~~-----------~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~ 237 (524)
T PF05977_consen 170 AAFLINALSFLISILALLRWKPPPPPSSL-PRERFFS-----------ALREGLRYVRSSPPLRSVLLRSFLFNLFASAV 237 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccccc-chhhhhh-----------hHHHHHHHHhcchHHHHHHHHHHHHHHhhhHH
Confidence 99999888777665555444433221111 1111111 11346778888998887777777777777777
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhH
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 420 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
...+|.+.++.+|.++...|++.+..++|+++|.++.+++.+|+++++ ++..+.+..+..++.+...++.+
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~---------lv~~~~~~~a~~~~~lal~~~~~ 308 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR---------LVLLASLLFALALLLLALSPSFW 308 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch---------hhHHHHHHHHHHHHHHhcchHHH
Confidence 888999999999999999999999999999999999999999887763 22333344444444455555555
Q ss_pred HHHHHHHHHhhhhhhhhchhhh-hhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHH
Q 010343 421 MAVLCMACSQGTDAFSQSGLYS-NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA 499 (512)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 499 (512)
.....+++.+...........+ .+...|++.+|+++|++++....+..+|..+.|.+.++.|.+..+.+.+++.+++.+
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444444 445555678999999999999999999999999999999999999888877777666
Q ss_pred HHHHh
Q 010343 500 VWNLF 504 (512)
Q Consensus 500 ~~~~~ 504 (512)
+....
T Consensus 389 ~~~~~ 393 (524)
T PF05977_consen 389 IALRF 393 (524)
T ss_pred HHHHh
Confidence 65544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=263.85 Aligned_cols=359 Identities=14% Similarity=0.103 Sum_probs=246.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHH-HHH-----HHHHHHHHhhhhHhHhhcCChHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQ-SSF-----FWGYLLTQIAGGIWADTVGGKAVLGF 174 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~ 174 (512)
.|++....++++.++.+++...+++..|.+.++++.++.+.+.+. +.. .+...+++++.|+++||+|||+.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 355678888999999999999999999999999999888765443 322 22234678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcChH--------HHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHH
Q 010343 175 GVVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG 246 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 246 (512)
+.++..++.+++++++ +++ .+++.|+++|++.+...+....++.|++|+++|++++++.....++|..++
T Consensus 92 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 92 TLSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 665 468899999999999999999999999999999999999999988888888
Q ss_pred HhHHHHHh--------cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhh
Q 010343 247 LAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL 318 (512)
Q Consensus 247 ~~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (512)
+.+++.+. +.+|||+.|++..+...+ . +......+ +.+ +...+. +++.....++...
T Consensus 170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~---~~~~~~~~-e~~---~~~~~~-------~~~~~~~~~~~~~ 234 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-I---FLIRRSLE-ETE---EFLARK-------HRPSMREIFRSLA 234 (434)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-H---HHHHHhcC-CCH---HHHHhh-------hccccccHHHHHH
Confidence 88877763 468999999875433211 1 11111111 110 000000 0001112244445
Q ss_pred cChHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 010343 319 SKPPVWALI-VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 397 (512)
Q Consensus 319 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 397 (512)
++++.+... +..++....++....+.|.|+++.+|++..+.+++.....++.+++.++.|++.||+++|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~------- 307 (434)
T PRK15075 235 ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL------- 307 (434)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-------
Confidence 565555433 333444556677888999999988899999999988889999999999999999999988432
Q ss_pred HHHHHhH-HHHH-HHHhhccCChhHHHHH-HHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHHHHHHHh-HHHHHHHH
Q 010343 398 MQSIGFL-GPAF-FLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGV-LAGVFGTA 472 (512)
Q Consensus 398 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~-~g~~ig~~ 472 (512)
....... .... ........+....... ..+.+.+.+ ...+..... .+..+++.|+++.|+.+.+.. +++.++|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~ 386 (434)
T PRK15075 308 IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPA 386 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHH
Confidence 1111111 1111 1111112222222212 222222222 222323333 445566889999999765555 45888999
Q ss_pred hhhheeecCcch
Q 010343 473 ATGYILQHGSWD 484 (512)
Q Consensus 473 l~g~l~~~~g~~ 484 (512)
+.|++.|+.|+.
T Consensus 387 ~~g~i~~~~g~~ 398 (434)
T PRK15075 387 ISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHhcCCc
Confidence 999999987753
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=260.09 Aligned_cols=369 Identities=13% Similarity=0.094 Sum_probs=264.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP 187 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 187 (512)
+....++.........+.++. +.+++|.|+.++|++.+...+...+.+++.|+++||+|||+++..+.++.+++.+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 335555556666666666665 6788999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHH
Q 010343 188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG 267 (512)
Q Consensus 188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~ 267 (512)
+.+ +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+...++|..+||.+++.+. .+||++.|++.+
T Consensus 95 ~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 95 IAH--EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred Hhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 888 89999999999999999889999999999999999999999999999999999999999998 679999999988
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010343 268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 347 (512)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 347 (512)
+..++..++.....++.++++ . .+ + ...++++.+++|.++...+..+...........++|.|
T Consensus 172 ~~~~~~~i~~~~~~~~~~~~~-~-~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 234 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYKLST-V-RT-P--------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIM 234 (400)
T ss_pred HHHHHHHHHHHHhCCcccccc-c-ch-h--------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 777766555444444321110 0 00 0 02246678889888766555554444444456788999
Q ss_pred HHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHH-
Q 010343 348 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC- 425 (512)
Q Consensus 348 l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 425 (512)
+++. +.++.+.+++++..+++...+....+++.|| ++.++ ... .++...+.........+..+.....
T Consensus 235 ~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (400)
T PRK11646 235 VNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-------RLM--AGLLIMSLSMFPIGMVSNLQQLFTLI 304 (400)
T ss_pred HHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-------HHH--HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8885 4577888888888887777666666666654 44331 122 2222222222222222333333222
Q ss_pred HHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecC---c-chhHHHHHHHHHHHHHHH
Q 010343 426 MACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG---S-WDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~---g-~~~~~~~~~~~~~~~~~~ 500 (512)
.+.+.+.. ...+...... +..+++++|+++|+.+...++|..+||.+.|++.|+. + ....+...+++.+++.+.
T Consensus 305 ~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 305 CLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 22333333 3334444444 4456689999999999999999999999999999984 2 456666666666666555
Q ss_pred HHHhcCCc
Q 010343 501 WNLFSTGE 508 (512)
Q Consensus 501 ~~~~~~~~ 508 (512)
.....|++
T Consensus 384 ~~~~~~~~ 391 (400)
T PRK11646 384 LYWQFSQK 391 (400)
T ss_pred HHHHHhhc
Confidence 44434443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=257.86 Aligned_cols=359 Identities=16% Similarity=0.140 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.+....+..+....+...+.+.+|.+.+++|.|..+.++..+++.++..+++++.|+++||+|||+.+..+.++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34455566667777777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHH
Q 010343 185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264 (512)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 264 (512)
++.+.+ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..||++.|+
T Consensus 84 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 84 LCSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred HHHHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 988888 888999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhh
Q 010343 265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 344 (512)
+.+++.++..++.+...+++++++++.+... ....++.++++.++...+...+.......+..+.
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETRPARAPAASSK---------------PRENSESLLNRFFLSRLVITTLSVTVILTFVNTS 226 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccCCccch---------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9888877776666555555432221111000 1123456788887766665555555555666777
Q ss_pred HHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHH
Q 010343 345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL 424 (512)
Q Consensus 345 ~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (512)
|.++++.+|++..+.+.+.+..+++.+++.++.+++.||+++|+. ......+...+........ ........
T Consensus 227 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 298 (392)
T PRK10473 227 PVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL-------MLTSQVLFLAAGITLALSP-SHAVSLFG 298 (392)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 888888789999999999999999999999999999999998842 2222222222222222111 11122222
Q ss_pred HHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHH
Q 010343 425 CMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 494 (512)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 494 (512)
......+....... .......| ++++ |.......++..+++.+++++.++.|+.......+.+.
T Consensus 299 ~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 299 ITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 22222222211111 12222333 3332 33334455677777777777777777765554444433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=261.64 Aligned_cols=368 Identities=11% Similarity=0.071 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
+..+.+..++...+.....+.+|. +.+++|+|..++|++.+++.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 445556677777777887777665 5578999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHH
Q 010343 185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264 (512)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 264 (512)
+..+.+ +++.+++++++.|.+.+...+...++..|.+++++|++++++.+...++|.++||.+++.+.+ .+|+..|+
T Consensus 89 ~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~ 165 (395)
T PRK10054 89 AIPLVN--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFW 165 (395)
T ss_pred HHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHH
Confidence 888888 888888889899988888888899999999999999999999999999999999999999875 79999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhh
Q 010343 265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 344 (512)
+.+++.++..++.....+++++++++.++ + ....++.+++|.++...+..++..+....+..+.
T Consensus 166 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 229 (395)
T PRK10054 166 LAAICSAFPLVFIQIWVQRSEKAIATETG--S--------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCI 229 (395)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccchh--h--------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhH
Confidence 88877777655554444333221111000 0 0113567889999888887777777766666677
Q ss_pred HHHHHHh--hcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhH-H
Q 010343 345 PTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA-M 421 (512)
Q Consensus 345 ~~~l~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 421 (512)
+.|..+. .+.+....+.+.....+..+......|++.||.++|+. ......+........... .++.+ +
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~-~~~~~~~ 301 (395)
T PRK10054 230 SQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL-------MTAGTLCFVIGLVGFIFS-GNSLLLW 301 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH-------HHHHHHHHHHHHHHHHHc-chHHHHH
Confidence 7776542 35556677788888888777888888999999987732 222222222222222211 22333 2
Q ss_pred HHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHH
Q 010343 422 AVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 500 (512)
.......+.+ .....+.......+ .+++.++++.+..+ ...+|..+||.++|.+.|+.|+...|++.+.+..++.++
T Consensus 302 ~~~~~~~~~g-~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 302 GMSAAVFTVG-EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred HHHHHHHHHH-HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence 2333333333 33333444444444 45578899988755 667899999999999999999999998877766666555
Q ss_pred HH
Q 010343 501 WN 502 (512)
Q Consensus 501 ~~ 502 (512)
..
T Consensus 380 ~~ 381 (395)
T PRK10054 380 ML 381 (395)
T ss_pred HH
Confidence 44
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=264.66 Aligned_cols=366 Identities=22% Similarity=0.323 Sum_probs=266.2
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+++|+.+...++.++..+.......+..|.+.+++|.++.+.|++.++..++..++.++.|+++||+|||+.+..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 35667777777788888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
+++.++..+.+ +++.+++.+++.|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+.+..||
T Consensus 93 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 93 SVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 99998888888 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhh----hhc--------ccc---CCCCCCchHHHhhcC---h
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI----VSS--------CAS---KEPVKTIPWGLILSK---P 321 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~~---~~~~~~~~~~~~~~~---~ 321 (512)
++.|++.+++.++..++.....+++++...+.++++.... ..+ ..+ +.+..+..++.++++ +
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR 250 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence 9999998766666666555555554331111111110000 000 000 000011112223332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 010343 322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 401 (512)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 401 (512)
..+.+.+..++..........+.|.+.+ .+|.+..+.+...+...++.++++++.+++.||+++|+ ......
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~ 322 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-------TALLLL 322 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-------HHHHHH
Confidence 3344444555555666777788885554 47999999999999999999999999999999998772 111111
Q ss_pred HhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhhe
Q 010343 402 GFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYI 477 (512)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l 477 (512)
..... .........+........++.+.+.+... +...... +..++++|+++.|+.+....+|..++|.+.|++
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 323 LGAVF-AVLVGSTLFSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 11111 11111112233333333444444444343 4444444 444557899999999999999999999999986
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=254.09 Aligned_cols=346 Identities=29% Similarity=0.476 Sum_probs=288.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP 187 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 187 (512)
.+....+....+.....+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 45566777888888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHH
Q 010343 188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG 267 (512)
Q Consensus 188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~ 267 (512)
+.+ +++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.+....+|..+++.+++.+.+..+|++.+++.+
T Consensus 83 ~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 83 FAS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred Hhc--cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 887 899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010343 268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 347 (512)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 347 (512)
++.++..+...... |.++...+..++..........+.|.+
T Consensus 161 ~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T cd06174 161 ILGLLLALLLLFLL---------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLY 201 (352)
T ss_pred HHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88777766555443 456677777788888888999999999
Q ss_pred HHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHH
Q 010343 348 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA 427 (512)
Q Consensus 348 l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (512)
.++.+|.+..+.+.......++..++.++.+++.||+++|+. ....+..............++.+.......
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 273 (352)
T cd06174 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL--------LLLIGLLLAALGLLLLALAPSLALLLVALL 273 (352)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 998779999999999999999999999999999999998840 222222222222222222333343434433
Q ss_pred HHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHH
Q 010343 428 CSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 502 (512)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (512)
+.+.......+.......+. ++++|++.+|+.+....++..++|.+.|.+.|..+++..+.+.+++.+++.++..
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 33333444445555555444 4589999999999999999999999999999999999999999998888776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=263.47 Aligned_cols=400 Identities=13% Similarity=0.111 Sum_probs=262.3
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccc--------CCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF--------NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 171 (512)
+...+..++..++.+..+++...+++..|.+.+++ +.+..+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34566777777888999999999998888888776 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---------h-hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhh
Q 010343 172 LGFGVVWWSIATALTPVA---------A-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL 241 (512)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~---------~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 241 (512)
+.++.++++++.++.++. + ...++.+++.|+++|++.+...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999998888777653 1 012567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHh--------cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCC-CCChhhhHhhhhccccCCC--CC
Q 010343 242 GSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP-QLRPAEKKLIVSSCASKEP--VK 310 (512)
Q Consensus 242 g~~~g~~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~ 310 (512)
|..+++.+++.+. +.+|||+.|++.++..++..+.. ++.||+++... +.+.++.+...+.....++ ..
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence 9999988776553 35689999998887777765444 44555543210 1111111000000000000 00
Q ss_pred CchHHHhhc-----ChHHHH-----HHH----HHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHH
Q 010343 311 TIPWGLILS-----KPPVWA-----LIV----SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANL 376 (512)
Q Consensus 311 ~~~~~~~~~-----~~~~~~-----~~l----~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 376 (512)
..+.++..+ .+..+. +.. ..+...........+.|.+.++ .|.+....++.....++..+++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~ 325 (479)
T PRK10077 247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVL 325 (479)
T ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHH
Confidence 000111110 011110 000 0111111122334556776665 7888877777778888999999999
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH-hhc--cCChhHHHHHHHHHHhhhhhhhhchhhhhhhhh-cCcch
Q 010343 377 GGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLS--HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYS 452 (512)
Q Consensus 377 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 452 (512)
.+++.||+++|+... ........+...+ ... .....+........+.+......+.......+. ++++|
T Consensus 326 ~g~l~dr~g~r~~~i-------~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 398 (479)
T PRK10077 326 AIMTVDKFGRKPLQI-------IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 398 (479)
T ss_pred HHHHHHHhcChHHHH-------HhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence 999999999884322 1111111111111 111 111122222222223333222234445555555 45789
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhh------heeecCcchhHHHHHHHHHHHHHHHHHHhcCCc
Q 010343 453 GVLLGLSNTAGVLAGVFGTAATG------YILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 453 g~~~g~~~~~~~~g~~ig~~l~g------~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (512)
+++.|+.+....++..+++.+.+ ++.|..++...|++.+++.+++.++.+.+.++.
T Consensus 399 ~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 399 GKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999998866655 444677888888888877777766655554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-29 Score=256.11 Aligned_cols=379 Identities=13% Similarity=0.119 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-----CChHH-HHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWW 179 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~ 179 (512)
...++..++.+++........+|.+.++.|.+..++|.+ +...... ++++++|+++||+ ||||. +..+.++.
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 444555566677777888888999999999999999997 3344443 6899999999999 99885 66777777
Q ss_pred HHHHHHHHHHh-hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-cc
Q 010343 180 SIATALTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RF 257 (512)
Q Consensus 180 ~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~ 257 (512)
+++...+++.+ ..+++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777776653 12577888899999999999999999999999999999999999999999999999999999998 57
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHH
Q 010343 258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337 (512)
Q Consensus 258 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 337 (512)
|||..|++.+++.++..+..+. .+|++++.++ ++..+ +....++++.++++..+...+..++.....
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~-~~~~~-----------~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~ 238 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATLL-APEPTDTIPV-PKTLE-----------QAVVAPLRDFFGRNNAWLILLLIVLYKLGD 238 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-cCCCcccccc-ccchh-----------hhHHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 9999999988877766555444 3443221111 00000 001235667788888777766666666666
Q ss_pred HHHHHhhHHHHHHhhcCCccchhhhhh-hhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-HHHHHHHHhh-c
Q 010343 338 FILLTWMPTYYNQVLHFNLTESGLFCV-LPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQL-S 414 (512)
Q Consensus 338 ~~~~~~~~~~l~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 414 (512)
.....+.+.|+.+.+|++..+.+.+.. ...++.+++.+++|++.||+++++. ......+ ......+... .
T Consensus 239 ~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~-------l~i~~~l~~l~~l~~~~l~~ 311 (491)
T PRK11010 239 AFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA-------LMIFGILQGVSNAGYWLLSI 311 (491)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 677778888887778999999999885 5568999999999999999998742 2111111 1111111111 1
Q ss_pred cCChhHHHHHHHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 415 HVDSPAMAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
..++.+.......+.....+......... ....+++..++..|+.+....+|..+++.+.|++.|..||+..|.+.+++
T Consensus 312 ~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~ 391 (491)
T PRK11010 312 TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAA 391 (491)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 12232222222222111112222223333 34455578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 010343 494 YLVGTAVWNLFST 506 (512)
Q Consensus 494 ~~~~~~~~~~~~~ 506 (512)
.+.+.++....++
T Consensus 392 ~l~~l~~~~~~~~ 404 (491)
T PRK11010 392 AVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHh
Confidence 8888777666543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-30 Score=252.52 Aligned_cols=366 Identities=15% Similarity=0.177 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.++.++..+++.++......+.+|.+++++|.|..+.|++.+.+.+++.+++++.|++.||+|||+.+..+.++++++.+
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 35566777888888888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHh-hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc-------
Q 010343 185 LTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR------- 256 (512)
Q Consensus 185 ~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------- 256 (512)
++.... ..+++.+++.|++.|++.+...+..+.++.+..|+++|++.+++.+...++|..+||.+++.+...
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 764432 127889999999999999999999999999999999999999999999999999999999887532
Q ss_pred -------------------cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHh
Q 010343 257 -------------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLI 317 (512)
Q Consensus 257 -------------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (512)
.+||++|++.+++.++..++..+. +.++.++++ ++ + .....+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~p~~~~~~-~~--~-----------~~~~~~~~~~ 228 (410)
T TIGR00885 164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KMPALNHSD-AK--Q-----------ISFSASLSRL 228 (410)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccc-cc--c-----------ccchhhHHHH
Confidence 369999998888777655444322 111111110 00 0 0001234567
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-cCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHH
Q 010343 318 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL-HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK 396 (512)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 396 (512)
+++|.++...+..+++...+....++++.|.++.. +.+....+...+....+..+|+++++++.||+++|+
T Consensus 229 ~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-------- 300 (410)
T TIGR00885 229 ARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-------- 300 (410)
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--------
Confidence 89999998888888888888888899999997632 333444455666777888999999999999998873
Q ss_pred HHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhh
Q 010343 397 IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATG 475 (512)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g 475 (512)
.+....... ....+.....+.......+.+.+.+..... +...... +..+++......++... .+|+.++|++.|
T Consensus 301 ~l~i~~~~~-~~~~ll~~~~~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G 376 (410)
T TIGR00885 301 VLMAYAIIG-MALCLGSIFAGGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQG 376 (410)
T ss_pred HHHHHHHHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHH
Confidence 222222222 222222222223334445555555555555 5555554 44444433333343333 399999999999
Q ss_pred heeecC------cchhHHHHHHHHHHHH
Q 010343 476 YILQHG------SWDDVFKVSVGLYLVG 497 (512)
Q Consensus 476 ~l~~~~------g~~~~~~~~~~~~~~~ 497 (512)
.+.|+. +++..|++...+.+..
T Consensus 377 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 377 FIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHHHhcccccCccchHHHHHHHHHHHH
Confidence 999953 5777787755554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-30 Score=251.10 Aligned_cols=357 Identities=12% Similarity=0.074 Sum_probs=258.2
Q ss_pred HHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCCh----HHHHHHHHHHHHHHHHHHH
Q 010343 113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK----AVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~ 188 (512)
++........+.+.+|.+.+++|.|..++|++.+++.++..++++++|++.||+||| +.+.+...+. .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 555556678889999999999999999999999999999999999999999999984 3332222221 2222233
Q ss_pred HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHH
Q 010343 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268 (512)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 268 (512)
.+ +++.+++.|++.|++.+...+...++..++ +++|+++++..+...++|..+||++++.+.+++|||..|++.++
T Consensus 91 ~~--~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~ 166 (382)
T PRK11128 91 AH--SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA 166 (382)
T ss_pred cc--cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 35 789999999999999998999888888876 46688889999999999999999999999999999999988776
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010343 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348 (512)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 348 (512)
..++..+.. ...+++++++++ ++ + .++...++++++|+|.++.+.+..++..........+.|.|+
T Consensus 167 ~~~~~~~~~-~~~~~~~~~~~~-~~---~---------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 232 (382)
T PRK11128 167 GVASMLLGQ-LLRPTIMPQGES-RQ---Q---------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW 232 (382)
T ss_pred HHHHHHHHH-HccCCCCCcccc-cc---c---------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 555443332 233322111110 00 0 001134578899999999888888888777778888999999
Q ss_pred HHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHH
Q 010343 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC 428 (512)
Q Consensus 349 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (512)
++ .|.+..+.|.+.+...++.++..++.+++.||+++++. +..+....++........++.+......++
T Consensus 233 ~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (382)
T PRK11128 233 QA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL---------LLLSAICGVVRWGLMGSTTALPWLIVIQIL 302 (382)
T ss_pred HH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77 79999999999999999999999999999999998832 223333333333333334444444433333
Q ss_pred HhhhhhhhhchhhhhhhhhcCcchhhHHHHHH-HHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHH
Q 010343 429 SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSN-TAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 500 (512)
.+.......+....+..+.+++++++..++.+ ....+|..+||.++|.+.|+.|+ ..++..+++.+++.++
T Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 33333334455555555566777789999887 44567889999999999999887 4666666665555433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-29 Score=245.99 Aligned_cols=374 Identities=14% Similarity=0.068 Sum_probs=264.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-----CChH-HHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKA-VLGFGVVWWSIA 182 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~ 182 (512)
.+..++.++.........+|.+.++.|+|.+++|++..+... .+.++++|+++||+ |||| ++.++.++.+++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 345677888888889999999999999999999999777665 69999999999999 7765 688888888888
Q ss_pred HHHHHHHhh-cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc-cCch
Q 010343 183 TALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWP 260 (512)
Q Consensus 183 ~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~ 260 (512)
..++.+.+. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 877777631 25677888888888888999999999999999999999999999999999999999999999885 5999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
..|++.+++.++..+.. ...+++++++++.++..++ ...+++++++||.++.+++..++........
T Consensus 162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~ 228 (402)
T PRK11902 162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGEA------------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFA 228 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHHH------------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence 99999888776655443 3334332221111100000 1235778899999988777766666554444
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-HHHHHHHHhhcc-CC
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPW-LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQLSH-VD 417 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 417 (512)
..+.+.++.+.+|+++.+.+++....+ ++.+++.++.+++.||+++|+. ....... ......+..... .+
T Consensus 229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~-------l~~~~~~~~l~~l~~~~~~~~~~ 301 (402)
T PRK11902 229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS-------LMLFGVLQAVSNLGYWVLAVTPK 301 (402)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 455566677778999999999887655 4689999999999999998742 2111111 111111211111 22
Q ss_pred hhHHHHHHHHH----HhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 418 SPAMAVLCMAC----SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 418 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
+.+.......+ ++............+.+ .+..++..++.+....++..+++.++|.+.|+.||+..|.+.+++
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~ 378 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTAAFVALLMALCN---RSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVI 378 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 33333332221 21222222223333333 333455567777777788887788999999999999999999988
Q ss_pred HHHHHHHHHHhcCC
Q 010343 494 YLVGTAVWNLFSTG 507 (512)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (512)
.+++.++.....++
T Consensus 379 ~~~~~~~~~~~~~~ 392 (402)
T PRK11902 379 ALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHHhhh
Confidence 88887766555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-30 Score=252.65 Aligned_cols=379 Identities=17% Similarity=0.227 Sum_probs=282.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhh-hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
....++..++..++....+...+... +..+.+|.+....+.+.+.+++.++++++++++|.+.||++..+.+....+++
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 34566667777888888887777655 55588999999999999999999999999999999999999989888888888
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh-----
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI----- 254 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----- 254 (512)
++..++..... |++.+++.|++.|+..+..+|....+++.|+.+++|+..+|++.+..++|.++|++++..+.
T Consensus 122 ~~~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 122 GLFGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 88887777777 99999999999999999999999999999999999999999999999999999999999863
Q ss_pred -cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccc------cCCCCCCchHHHhhcChHHHHHH
Q 010343 255 -HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCA------SKEPVKTIPWGLILSKPPVWALI 327 (512)
Q Consensus 255 -~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
...||||.|++.+++.++..++.++..|+.|.+..-.++.++....++.+ .+++.+...+++.+++|.+|.+.
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~ 279 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFS 279 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHH
Confidence 35789999999999999999999999999888665555544322211111 11224566788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHH----HhcCCchhhHHHHHHHHHh
Q 010343 328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL----VSKGLSVTTVRKIMQSIGF 403 (512)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----~~~~~~~~~~~~~~~~~~~ 403 (512)
+..++.....+++..|+|.|+.+..|++..++..+.....++++++.+++|.++||. .++ ........
T Consensus 280 l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~--------~~~~~~~~ 351 (495)
T KOG2533|consen 280 LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR--------LLFIVFLC 351 (495)
T ss_pred HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH--------HHHHHHHH
Confidence 999999999999999999999996679999999999999999999999999999995 333 12222222
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhh-hhhhhcCc-chhhHHHHHHHHHhH-HHHHHHHhhhheeec
Q 010343 404 LGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYS-NHQDIAPR-YSGVLLGLSNTAGVL-AGVFGTAATGYILQH 480 (512)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~g~~~g~~~~~~~~-g~~ig~~l~g~l~~~ 480 (512)
+........+............+..+........+.... ......+. ++-+..+......+. +.+.++...+.....
T Consensus 352 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~ 431 (495)
T KOG2533|consen 352 LYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR 431 (495)
T ss_pred HHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence 222222222222232233333222322222222233333 33334443 344444444444444 444444455555565
Q ss_pred CcchhHHHH
Q 010343 481 GSWDDVFKV 489 (512)
Q Consensus 481 ~g~~~~~~~ 489 (512)
+++...|..
T Consensus 432 y~~~~~f~~ 440 (495)
T KOG2533|consen 432 YGWGAVFYM 440 (495)
T ss_pred hhhhhHHHH
Confidence 777777733
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=249.60 Aligned_cols=349 Identities=16% Similarity=0.179 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
++..++.+++.......+.+..|. +.+++|+|+.+.+++.+++.++..+++++.|+++||+|||+.+.++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 345677777888888889999995 8899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc---------
Q 010343 185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH--------- 255 (512)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--------- 255 (512)
++.+.+. +++.+++.|+++|++.+. .+...+++.+++|+++|++++++.....++|..+++.+++.+.+
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 83 WAGLAVQ-SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8887653 578889999999999664 56678899999999999999999998888888888888776654
Q ss_pred -ccCchhHH-HHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHH
Q 010343 256 -RFGWPSVF-YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333 (512)
Q Consensus 256 -~~g~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (512)
..+||+.| +..+++..+..++.+...++.++++++..+.+.+ .... ..++......++.+++|+++...+..++.
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK--GARW-SVGTGALGDQLKVFRDRHTWILALLYSVT 237 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc--cccc-cccchhHHHHHHHHhccchhhHHHHHHHH
Confidence 34899999 4445555554444444444433322111110000 0000 00000111456678889988888887777
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL 413 (512)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (512)
......+..+.|.|+++.+|+++.+.+.+.....+..++++++.|++.||+++|+. ..........+..++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~ 310 (366)
T TIGR00886 238 FGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK-------LLMSFLGVAMGAFLVVL 310 (366)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh-------HHHHHHHHHHHHHHHHh
Confidence 77778888999999999899999999999999999999999999999999998843 22222222222222222
Q ss_pred ccCC--hhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHH
Q 010343 414 SHVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLA 466 (512)
Q Consensus 414 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 466 (512)
...+ ................+...........+..|+++|++.|+.+...++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 311 GLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG 365 (366)
T ss_pred cCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence 2221 3333333333333333334444555666677889999999999888765
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=250.65 Aligned_cols=393 Identities=14% Similarity=0.139 Sum_probs=260.0
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccc-----CCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF-----NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 174 (512)
+.+++.+.++.++.+..+++....+...|.+..++ +.+..+.+++.+.+.++..++++++|+++||+|||+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45677788888899999999999998888876642 3556678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHH
Q 010343 175 GVVWWSIATALTPVAAKL----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS 250 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 250 (512)
+.++..++.++.++.++. +++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877610 1678999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhc-----------------------ccCchhHHHHHHHHHHHHHHHHhhhccCCCCC---CCCCChhhhH-hh---h
Q 010343 251 PFLIH-----------------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE---DPQLRPAEKK-LI---V 300 (512)
Q Consensus 251 ~~l~~-----------------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~---~ 300 (512)
..+.. ..+||+.|.+.++..++..+. .+..||+|+- +.+.+++..+ .. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 76532 247999998777666554444 4556776652 1111111010 00 0
Q ss_pred ----hcccc------CCCCCCchHHHhhcC---hHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhh--
Q 010343 301 ----SSCAS------KEPVKTIPWGLILSK---PPVWA----LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL-- 361 (512)
Q Consensus 301 ----~~~~~------~~~~~~~~~~~~~~~---~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~-- 361 (512)
++.++ +++..+.++++++++ ++.+. +....+...+.+++...+.|.++++ .|++....+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~ 329 (502)
T TIGR00887 251 VKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNA 329 (502)
T ss_pred cccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhH
Confidence 00000 000011256666643 22211 1222333344555667778888876 6887653221
Q ss_pred ----------hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc--CChhHHHHHHHHHH
Q 010343 362 ----------FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACS 429 (512)
Q Consensus 362 ----------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 429 (512)
......++.+++.++.+++.||+|||+... ........+..++.... .+............
T Consensus 330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 402 (502)
T TIGR00887 330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQL-------MGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ 402 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH-------HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 223344567778899999999999995322 11111111111111111 01111111111111
Q ss_pred hhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeec----------CcchhHHHHHHHHHHHHH
Q 010343 430 QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH----------GSWDDVFKVSVGLYLVGT 498 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~----------~g~~~~~~~~~~~~~~~~ 498 (512)
........+....+..|..| +.|+++.|+.+.+..++++++|.+.|.+.+. .++...|.+.+++++++.
T Consensus 403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (502)
T TIGR00887 403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI 482 (502)
T ss_pred HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH
Confidence 11122222334444455555 7899999999999999999999999999884 345567777777777665
Q ss_pred HHH
Q 010343 499 AVW 501 (512)
Q Consensus 499 ~~~ 501 (512)
+..
T Consensus 483 i~~ 485 (502)
T TIGR00887 483 LFT 485 (502)
T ss_pred HHh
Confidence 544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=250.99 Aligned_cols=384 Identities=13% Similarity=0.057 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
++.+.+.+++..+..+...+.+|.+ .+++|+|+.++|++.+++.++..++++++|+++||+|||+++.++..+.++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 91 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG 91 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3444455666666666777777765 455999999999999999999999999999999999999999887666554433
Q ss_pred HHHH---Hhhc---ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 185 LTPV---AAKL---GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 185 ~~~~---~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
.... .+.. .+...++.+++.|.+.....+....+..+. .++++..+|..+...++|..++|++++.+.+ .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~ 168 (420)
T PRK09528 92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-IN 168 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cC
Confidence 2211 1100 011122333444444333334444443322 3456778899999999999999999999876 48
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHH
Q 010343 259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF 338 (512)
Q Consensus 259 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (512)
|+..|++.+++.++..++.+...++++++....+++++ ++++....+.++.+++|.++.+.+..++....+.
T Consensus 169 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~ 240 (420)
T PRK09528 169 PQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA--------NASAVSLKDALALLKLPKFWFLVLYVIGVACFYD 240 (420)
T ss_pred chHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc--------ccccccHHHHHHHccCCCeEeehHHHHHHHHHHH
Confidence 99999988887777666655554443322111000000 0011112345567889988776666555555555
Q ss_pred HHHHhhHHHHHHhh---cCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 339 ILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 339 ~~~~~~~~~l~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
....+.|.|+.+.+ +.+..+.|.+.++..++..++.++.|++.||+++|+... .... +.+........
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-------~~~~--l~~~~~~l~~~ 311 (420)
T PRK09528 241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALL-------LAGT--IMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH-------HHHH--HHHHHHHHHHh
Confidence 56666777776543 456677889999999999999999999999999985321 1111 11112122222
Q ss_pred CChhHHHHHHHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHH-HHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 416 VDSPAMAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~-~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
.++.+.......+.+............+ .+..+++.+++..+. ++....+|..++|.+.|++.|..||+..|...+++
T Consensus 312 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~ 391 (420)
T PRK09528 312 ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI 391 (420)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 3334433333333222222222223333 345566778887665 67788999999999999999999999999998888
Q ss_pred HHHHHHHHHHhcCCcc
Q 010343 494 YLVGTAVWNLFSTGEK 509 (512)
Q Consensus 494 ~~~~~~~~~~~~~~~~ 509 (512)
.++..++.....++++
T Consensus 392 ~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 392 VLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 8777666665554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=244.25 Aligned_cols=333 Identities=12% Similarity=0.105 Sum_probs=243.6
Q ss_pred hhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Q 010343 119 DRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLL 198 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (512)
....+.+.+|.+.+++|.|..+.|++.+++.++..+++++.|++.||+|||+++.++.++..++.+.. ..+ +.+.++
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l~ 91 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALLF 91 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999998888877776 566 788899
Q ss_pred HHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc--CchhHHHHHHHHHHHHHHH
Q 010343 199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTV 276 (512)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~ 276 (512)
+.|++.|++.+...+....++.|+++ ++|++++++.+....+|..+++.+++.+.+.. +||+.|.+.+++.++....
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~ 170 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA 170 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888999885 68999999999999999999999999888765 3999988776654443222
Q ss_pred HhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCc
Q 010343 277 WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNL 356 (512)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 356 (512)
. .++.++++++.++ .+....++.+++|.++...+..++....+.....++|.|+++ .|++.
T Consensus 171 ~---~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~ 231 (355)
T TIGR00896 171 W---IPQVRRRVAANQT---------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASA 231 (355)
T ss_pred H---hhhhccccCCCCC---------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH
Confidence 2 1221111110000 001234567788998887777777777788888999999987 69999
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhh
Q 010343 357 TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFS 436 (512)
Q Consensus 357 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
.+.+.+.+...++.++++++.|++.||++.++. .......+...+.........+..+ ....+.+.+.+...
T Consensus 232 ~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~g~~~ 303 (355)
T TIGR00896 232 ATAGSLLALMQLAQAASALLIPALARRVKDQRG------IVAVLAVLQLVGLCGLLFAPMHGLW--AWALVLGLGQGGAF 303 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH------HHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHhhhhHh
Confidence 999999999999999999999999999965531 1111111111111111111111211 12233343333333
Q ss_pred hchhhhhhhhhc-CcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 437 QSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 437 ~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
+........+.+ +++++...++.+...+++..++|.+.|++.|+.|
T Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 304 PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222333344 3567999999999999999999999999999865
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=255.45 Aligned_cols=361 Identities=17% Similarity=0.107 Sum_probs=250.4
Q ss_pred hhhhhhhcccCCC---hhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 010343 125 IAILPMSAEFNWN---PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR 201 (512)
Q Consensus 125 ~~~~~~~~~~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (512)
+..+.+.+|++++ ..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++.++++ +++.+++.|
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFR 187 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence 5678899999999 99999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhc
Q 010343 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ||+.|++.++..++..+.. +..
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence 999999999999999999999999999999999999999999999998876653 9999999988877766655 445
Q ss_pred cCCCCCCC-CCChhhhHh-h----------------hh--ccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHH
Q 010343 282 HSSPAEDP-QLRPAEKKL-I----------------VS--SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341 (512)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~-~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (512)
+|+++... +.+.++... . .. +.+.+.+.+..++++++++|.++...+...+..+......
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 55443110 001100000 0 00 0000011123467889999998877666655544443333
Q ss_pred HhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHH
Q 010343 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM 421 (512)
Q Consensus 342 ~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (512)
..++.+..+ .+.+. .......++..+++.++.+++.||+|+|+. .......................+.
T Consensus 344 ~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ 412 (505)
T TIGR00898 344 YGLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYT-------MAASLLLAGVALLLLLFVPVDLYFL 412 (505)
T ss_pred HHHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHcCCCchHH
Confidence 333333333 44443 233445677888999999999999998832 2222221122222222222222233
Q ss_pred HHHHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHH
Q 010343 422 AVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 500 (512)
.....+++.+......+....+..+..| +.|+++.|+.+....+|++++|.+.+ + +..++...+.+.+++.+++.++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333333333444555555555 78999999999999999999999999 4 4445566666666666666555
Q ss_pred HHHh
Q 010343 501 WNLF 504 (512)
Q Consensus 501 ~~~~ 504 (512)
..++
T Consensus 491 ~~~l 494 (505)
T TIGR00898 491 TLFL 494 (505)
T ss_pred HHcC
Confidence 4444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=245.23 Aligned_cols=378 Identities=16% Similarity=0.188 Sum_probs=285.4
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+..++.+.++++...++.++.+.+.-..+.+.+.+|+++...|++.+.+.+.+.++.|++|+++||++||+++.+|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG- 258 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g- 258 (512)
.++.++.+++. .+|+++++|.+.|+|.+.+.|..+++++|.+|.++|++.+++++....+|..+|.+.+..+.+..+
T Consensus 109 ~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 109 TLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 99999999998 899999999999999999999999999999999999999999999999999999999999988777
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHH
Q 010343 259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF 338 (512)
Q Consensus 259 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (512)
|||.|+..+++.++..++.+++.+++++...++.+.+.+. ..+......+.+.+.+++.+....+......+...
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G 261 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG 261 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----CCCccchHHHHHHHHccCceeeehHHHHHHHHhcc
Confidence 9999999999999999999988888765432221111110 01111223355666777777777777777777777
Q ss_pred HHHHhhHHHHHH---hhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHhHHHHHHHHhh
Q 010343 339 ILLTWMPTYYNQ---VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV--TTVRKIMQSIGFLGPAFFLTQL 413 (512)
Q Consensus 339 ~~~~~~~~~l~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 413 (512)
.+..|.|.+... ..|.+.....++..+...++.+|.+++|.++||+.+..... ..+.......+......++...
T Consensus 262 s~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~ 341 (493)
T KOG1330|consen 262 SLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF 341 (493)
T ss_pred ccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH
Confidence 766666665543 24556666677778888999999999999999965532211 1111222233333333333222
Q ss_pred cc--CChhHHHHHHHHHHhhhhhhhhchhh-hhhhhhcCcchhhHHHHHHHHHhH-HHHHHHHhhhheeec-Ccch
Q 010343 414 SH--VDSPAMAVLCMACSQGTDAFSQSGLY-SNHQDIAPRYSGVLLGLSNTAGVL-AGVFGTAATGYILQH-GSWD 484 (512)
Q Consensus 414 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~l~g~l~~~-~g~~ 484 (512)
.. ....+..+++++++............ ....-++|++|.++.++...+..+ |.+-+|.+.|.+.|+ .||.
T Consensus 342 ~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 342 PAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 22 22333344444444444444433333 344556789999999998877655 556666699999998 4555
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=248.55 Aligned_cols=397 Identities=15% Similarity=0.172 Sum_probs=316.1
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHH
Q 010343 98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV 177 (512)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 177 (512)
+..+.|.++...++..+........++.+.+.++++++.+..+++|+.++......+..++.+.+.||+|.|.+.++|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 55678888888888888877778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcChHHHHH-HHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 178 WWSIATALTPVAAKLGLPFLLV-VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
+.+++.++..++. ++|.+++ ..++.|+|.++.+.+...++..+| +++|+.+.|+...+.++|.++-|.+...+.+.
T Consensus 120 v~~~g~~lssF~~--~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 120 VAALGLLLSSFAT--SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHh--hHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence 9999999999999 7776655 579999999999999999999988 88999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCC--------------------CC-----hhhh------Hhhhhcccc
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ--------------------LR-----PAEK------KLIVSSCAS 305 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-----~~~~------~~~~~~~~~ 305 (512)
+|||+.+++.+.+.+-..+.....+|..+...+. .. .... ....++.+.
T Consensus 197 ~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (509)
T KOG2504|consen 197 YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD 276 (509)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence 9999999999988877777777766633322111 00 0000 000000000
Q ss_pred -CC--CCCCchH---HHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHH
Q 010343 306 -KE--PVKTIPW---GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGW 379 (512)
Q Consensus 306 -~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 379 (512)
.. ..+..-. .+++++|.++.+.+...+...++.....++|.|..+ .|++..+.+.+++..++..++++++.|+
T Consensus 277 ~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~ 355 (509)
T KOG2504|consen 277 KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGL 355 (509)
T ss_pred cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhh
Confidence 00 1111111 478899999999999999999999999999999996 7999999999999999999999999999
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchh-hhhhhhhcCcchhhHHHH
Q 010343 380 IADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL-YSNHQDIAPRYSGVLLGL 458 (512)
Q Consensus 380 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~ 458 (512)
+.|+...+ +..+..++++..++........+..+.+....++.+...+...... ....+.+..++...+.|+
T Consensus 356 laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl 428 (509)
T KOG2504|consen 356 LADKPGIR-------ALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGL 428 (509)
T ss_pred hcCccccc-------hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHH
Confidence 99998855 2355555555555555555555555444444444333333443444 345555667899999999
Q ss_pred HHHHHhHHHHHHHHhhhheeecCc-chhHHHHHHHHHHHHHHHHHHhc
Q 010343 459 SNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 459 ~~~~~~~g~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
...+..++..+||++.|++.|..| |...|..++++.+++..+++...
T Consensus 429 ~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 429 LLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999966 99999999999988887666554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=245.39 Aligned_cols=360 Identities=17% Similarity=0.162 Sum_probs=249.4
Q ss_pred HHHhhhhhhhhhhhhhhhcccC--CChhhHHHHHHH-----HHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 114 LLCNMDRVNMSIAILPMSAEFN--WNPATVGLIQSS-----FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g--~s~~~~g~~~~~-----~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
+.+.+++..+....+.+.+++. .+..+.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777776654 445666665543 333445688999999999999999999999999999999
Q ss_pred HHHhhcChH--------HHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh----
Q 010343 187 PVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI---- 254 (512)
Q Consensus 187 ~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---- 254 (512)
++.+ +++ .+++.|+++|++.+...+...+++.|++++++|++..++.+.+..+|.++++.++..+.
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 83 GLLP--SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred hhCC--ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887 553 57889999999999999999999999999999999999999999999999998877654
Q ss_pred ----cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChH--HHHHHH
Q 010343 255 ----HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP--VWALIV 328 (512)
Q Consensus 255 ----~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 328 (512)
+.++||+.|++.+++.++...+.. ..+++++.+++ ++ +++....++++.+++++ ++...+
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGLYLRR-NLEETPVFEKA-----QE--------KHKKKRGPIRETLTKHRKPFLLGLG 226 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHH-hcCCChhHHHH-----Hh--------ccccccCCHHHHHHhchHHHHHHHH
Confidence 357899999887766555443322 22222211100 00 00111234556666655 666666
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHH-
Q 010343 329 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA- 407 (512)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~- 407 (512)
..++..........++|.|+++.+|.+..+.+.......++..++.++.|++.||+++|+... ..........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~------~~~~~~~~~~~ 300 (394)
T TIGR00883 227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI------IFTVLAALLAV 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH------HHHHHHHHHHH
Confidence 777777777788899999998878999999999999999999999999999999999884211 1111111111
Q ss_pred HHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHH-HHHHhHHHHHHHHhhhheeecCc-ch
Q 010343 408 FFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGS-WD 484 (512)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~-~~~~~~g~~ig~~l~g~l~~~~g-~~ 484 (512)
.........+..+.........+.......+...... +..++++|+++.|+. +....+|..++|.+.|++.|+.| +.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 380 (394)
T TIGR00883 301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWY 380 (394)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcch
Confidence 1111121222333333333333333323334444444 444557899999985 45566888999999999999977 77
Q ss_pred hHHHHHHHHHH
Q 010343 485 DVFKVSVGLYL 495 (512)
Q Consensus 485 ~~~~~~~~~~~ 495 (512)
..++...++.+
T Consensus 381 ~~~~~~~~~~l 391 (394)
T TIGR00883 381 AIGYYLAALAL 391 (394)
T ss_pred hHHHHHHHHHH
Confidence 66666555444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=240.19 Aligned_cols=377 Identities=12% Similarity=0.015 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
++.+...+++.+.....+.+.+|.+ .+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 4556666777777888888888775 556899999999999999999999999999999999999999877666655443
Q ss_pred HHH---HHh---hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 185 LTP---VAA---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 185 ~~~---~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
... +.+ ...+..+++.+++.|++.+...+....+..+.. ++++..+|......++|.++||.+++.+.+ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~ 160 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID 160 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC
Confidence 221 111 002334566788889988888888888877754 334567788889999999999999998865 59
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHH
Q 010343 259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF 338 (512)
Q Consensus 259 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (512)
|+..|++.+++.++..++.+...+++++++.. .+ .. + .++++.+..+.+++++||.++.+.+..++....+.
T Consensus 161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~----~--~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 232 (396)
T TIGR00882 161 PQIVFWLGSGFALILMLLLMFAKPKAPSSATV-AN-AL----G--ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYD 232 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-hc-cc----c--cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99999998888877766555544443221110 00 00 0 00111123457788999998877777666666666
Q ss_pred HHHHhhHHHHHHhh---cCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 339 ILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 339 ~~~~~~~~~l~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
....+.+.|+++.+ +.+....|.+.+...+...++....+++.||+++|+... .+....++.......
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~---------~~~~l~~l~~~~~~~ 303 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALL---------IAGTIMSVRIIGSSF 303 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH---------HHHHHHHHHHHHHHh
Confidence 66677888887754 455567788888889999999999999999999985321 222222222222222
Q ss_pred CChhHHHHHHHHHHhhhhhhhhchhhhhhh-hhcCcchhhHHHH-HHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 416 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~-~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
.++.+.......+.+..............+ ..+++.+++..+. .+....+|+.+++.+.|++.|..||+..|.+.+++
T Consensus 304 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 304 ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 333333333222222222222222222233 3345667776666 67889999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 010343 494 YLVGTAVWN 502 (512)
Q Consensus 494 ~~~~~~~~~ 502 (512)
.++..++..
T Consensus 384 ~~i~~~~~~ 392 (396)
T TIGR00882 384 VLLFTLISV 392 (396)
T ss_pred HHHHHHHHH
Confidence 877766544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=234.67 Aligned_cols=347 Identities=18% Similarity=0.141 Sum_probs=277.1
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhh
Q 010343 134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213 (512)
Q Consensus 134 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 213 (512)
.+.+..++|++.+...+...+.+++.|.+.||+|+|..+++|+.++..+.+++++.. +++.++++|.++|+|.+....
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHHHHh
Confidence 345677899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhcccCCcc-hhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 010343 214 AMNNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 292 (512)
Q Consensus 214 ~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (512)
+..++++|.+|+++ |++++|+...+.++|..+||+++|.+++..|.+.+|++.+++.++-..+.++..++.+.+++...
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~ 258 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE 258 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccc
Confidence 99999999998765 79999999999999999999999999999999999999999999988888877665443332111
Q ss_pred hhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHH
Q 010343 293 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 372 (512)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~ 372 (512)
+ ..++++++++|.++.........+.........++.+..+.+..+..+.|+.+....+...+
T Consensus 259 ~-----------------~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~i 321 (464)
T KOG3764|consen 259 Q-----------------GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAI 321 (464)
T ss_pred c-----------------CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhc
Confidence 1 33577899999999988888888888888889999999998886677999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHH-HHHHHHHhh---hhhhhhchhhhhhhhhc
Q 010343 373 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQG---TDAFSQSGLYSNHQDIA 448 (512)
Q Consensus 373 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~ 448 (512)
+..+.|.+.||+++.+ ......+++..+.+.......+...-+ +-...++.+ ......+....+.....
T Consensus 322 g~~lfg~la~k~~~~~-------wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh 394 (464)
T KOG3764|consen 322 GTNLFGKLADKYPHLR-------WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH 394 (464)
T ss_pred cCchHHHHHHhcCchh-------HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh
Confidence 9999999999999663 244444444444444333333333222 112222222 22223333333332222
Q ss_pred Cc---chhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 449 PR---YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 449 ~~---~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
.+ ..|.+.++......+|.++||.++|.+.+..|+++.....++..++-.-+..+++.
T Consensus 395 ~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 395 VSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred ccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 57899999999999999999999999999999999998888887776655555443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=237.66 Aligned_cols=368 Identities=11% Similarity=0.045 Sum_probs=248.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCC-hHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATALT 186 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~ 186 (512)
+.+.+|+.+.....+.+.++. +.+++|++..|+|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 455566667777777666544 667799999999999999999999999999999999965 778888888888888888
Q ss_pred HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcc--------cCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW--------VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
.+.+ +++.+++.+++.|++.+...+..+++..+. .....|.+.+| .+|.++||.+++.+....+
T Consensus 87 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~ 158 (418)
T TIGR00889 87 AQVT--TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS 158 (418)
T ss_pred HHhc--CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence 8777 889999999999998877777776654322 22223344333 5789999999988733323
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHH
Q 010343 259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF 338 (512)
Q Consensus 259 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (512)
|+ .|++.+++.++..++. +..+|.++++++.+...++ ....+.+.++|+|.++.+.+..++......
T Consensus 159 ~~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 225 (418)
T TIGR00889 159 NI-QLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKV-----------MLGLDAFILFKNKRMAIFFFFSMLLGAPLQ 225 (418)
T ss_pred hH-HHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHH-----------HhhhhHHHHhcCCCeeeHHHHHHHHHhHHH
Confidence 44 4555666555555443 3444443221111100000 001234567899998888888887777666
Q ss_pred HHHHhhHHHHHHhhcCCc--------cchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHH-
Q 010343 339 ILLTWMPTYYNQVLHFNL--------TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF- 409 (512)
Q Consensus 339 ~~~~~~~~~l~~~~g~~~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~- 409 (512)
....+.+.|+++ .|.++ ...+...++..+..+++.+..|++.||+|+|+. +..+.+..++.
T Consensus 226 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~---------l~~~~~~~~v~~ 295 (418)
T TIGR00889 226 ITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV---------MLLSLVAWALRF 295 (418)
T ss_pred HHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---------HHHHHHHHHHHH
Confidence 777888888877 46543 566899999999999999999999999998832 22222222222
Q ss_pred -HHhhccCCh--hHHHH-HHHHHHhhhhhhhhchhhhh-hhhhcCcchhhHHHHHH-HHHhHHHHHHHHhhhheeec---
Q 010343 410 -LTQLSHVDS--PAMAV-LCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSN-TAGVLAGVFGTAATGYILQH--- 480 (512)
Q Consensus 410 -~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~-~~~~~g~~ig~~l~g~l~~~--- 480 (512)
+........ .+... ..++.+.+.. ...+....+ .+..+++++++++|+.+ ....+|..+||.++|++.|+
T Consensus 296 ~l~~~~~~~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~ 374 (418)
T TIGR00889 296 GFFAYGDPEYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA 374 (418)
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 222211111 22222 2333333333 333443444 44455688999999997 56789999999999999998
Q ss_pred ---CcchhHHHHHHHHHHHHHHHHHHhcCCc
Q 010343 481 ---GSWDDVFKVSVGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 481 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (512)
.||+.+|.+.+++.+++.++...+.+++
T Consensus 375 ~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 375 YGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3589999988888777777666665543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=271.53 Aligned_cols=378 Identities=13% Similarity=0.094 Sum_probs=257.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh-hhhcccCCCh-hhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHH---HHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAIL-PMSAEFNWNP-ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF---GVVWWSI 181 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~---~~~~~~~ 181 (512)
+..+++.+..++....+..... .+..+.+.+. ...++..+++.++++++++++|+++||+|||+++.. +.++..+
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~ 97 (1140)
T PRK06814 18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA 97 (1140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333322 3444444333 457888999999999999999999999999997643 2222222
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchh
Q 010343 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 261 (512)
..+.....+ +++.++++|+++|++.+...|+..+++.+++++++|++++|+.+++.++|.++||+++|++.+..+|++
T Consensus 98 ~~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~ 175 (1140)
T PRK06814 98 LAIYGFHLN--SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI 175 (1140)
T ss_pred HHHHHHHHh--hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 222223335 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHH
Q 010343 262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341 (512)
Q Consensus 262 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (512)
.|+..++..++..++.+. .++.+......+... ... ......++.+.++|.++...+..++.++....+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1140)
T PRK06814 176 LVALLMGIAVLGWLASLF-IPKTGNAAPDLKIDR-NII--------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVL 245 (1140)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCCCCCCCCeecc-chH--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 995544444444433333 333322211111000 000 0002357788899999999888888888888888
Q ss_pred HhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH----------
Q 010343 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT---------- 411 (512)
Q Consensus 342 ~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 411 (512)
.++|.|+++.+|.+....|++.+..+++.+++.++.|++.+|..+++....+. +..++....+.+.
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~ 321 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGA----LLMGLFGLDLAFASSSVPAEPAQ 321 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHH----HHHHHHHHHHHhccccccccccc
Confidence 99999999989999999999999999999999999999998776664332211 1111111111110
Q ss_pred ------hhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheee-cCcch
Q 010343 412 ------QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWD 484 (512)
Q Consensus 412 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~-~~g~~ 484 (512)
.....+.+...+..++++.+.+....+.........+++.+|+++|+.+++..++..+++.+.|.+.+ ..++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~ 401 (1140)
T PRK06814 322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP 401 (1140)
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 00012333333334444544444444444444566667899999999999999999999999999975 45677
Q ss_pred hHHHHHHHHHHHHHHH
Q 010343 485 DVFKVSVGLYLVGTAV 500 (512)
Q Consensus 485 ~~~~~~~~~~~~~~~~ 500 (512)
..+++.+++.++..++
T Consensus 402 ~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 402 WIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766655554444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=219.69 Aligned_cols=376 Identities=16% Similarity=0.178 Sum_probs=286.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT 183 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 183 (512)
..++.+...+++.++......+.+|.+.+.++++..|++++..++..++.+.+++.|++.+|+|+|+-+++++.++++++
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35666667778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc------
Q 010343 184 ALTPVA-AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR------ 256 (512)
Q Consensus 184 ~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------ 256 (512)
.++.-+ ...++..++++-++.|.|.+....+.+.++....++++..+.+++.+.++++|.++||++++.+..+
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 887522 2227888999999999999999999999999999999999999999999999999999999998762
Q ss_pred -------------cCchhHHHHHHHHHHHHHHHHhhhc-cCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChH
Q 010343 257 -------------FGWPSVFYSFGSLGTVWFTVWLSKA-HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP 322 (512)
Q Consensus 257 -------------~g~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (512)
-.|+++|...+...++..+.....+ |+.++.+++..+.+ .....+++++|.
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~---------------~~~~~~l~~~~~ 237 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASG---------------SAGLSSLFQNKH 237 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccc---------------cchHHHHHhChH
Confidence 2378888887776666555544443 22221111111100 114567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 010343 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402 (512)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 402 (512)
++...+..+++.........|++.|+.+..|.+..+.+...+.++.+.++|++++.++.+|+...| .+....
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k--------~Laf~a 309 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK--------YLAFYA 309 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--------HHHHHH
Confidence 999999999999999999999999999988999999999999999999999999999999998773 222222
Q ss_pred hHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 403 FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
+.....+......+..+......+++.+.... .|.......+.-+++.....++ -....+|+++.|.+.|++.|+.|
T Consensus 310 -~~~ill~~~~~l~~g~v~~~~l~~ig~F~sim-fPTIfslal~~l~~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 310 -LIAILLLLAVALIGGVVALYALFLIGLFNSIM-FPTIFSLALKNLGEHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred -HHHHHHHHHHHHhcChHHHHHHHHHHHHhHHH-HHHHHHHHHhccCcccccccee-eeeheecchHHHHHHHHHHHhhh
Confidence 22222222222334455555555555555544 4555555544444444443333 55667899999999999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc
Q 010343 483 WDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
....+.....+|.+-.+.+.+..
T Consensus 387 ~~~~~~~~pllc~lyV~~~~~~~ 409 (422)
T COG0738 387 IQLTFLIVPLLCYLYVLFFALIG 409 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887755555544444433333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-27 Score=231.06 Aligned_cols=370 Identities=12% Similarity=0.091 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHH--HHHHHHHHHHHHhhhhH-hHhhcCChHHHHHHHHH-HHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLI--QSSFFWGYLLTQIAGGI-WADTVGGKAVLGFGVVW-WSI 181 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~--~~~~~~~~~~~~~~~g~-l~dr~g~r~~~~~~~~~-~~~ 181 (512)
+..++..++.+++......+.+|.+.++.|.|.+++|++ .++..+...+.+++++. ..||+||||.+++...+ .++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 556777889999999999999999999999999999997 46678888888888844 78999999887555433 222
Q ss_pred HHHHHH-H--HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 182 ATALTP-V--AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 182 ~~~~~~-~--~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
...... + ... ....++...++.++..+...+..+++..|..++++++...+....+..+|.++|+.+.+++.+.+|
T Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g 161 (390)
T TIGR02718 83 CLASLALVGPDVA-GAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG 161 (390)
T ss_pred HHHHHHcCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222222 1 221 233445556667777888889999999999988888989999998889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHH
Q 010343 259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF 338 (512)
Q Consensus 259 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (512)
||..|++.+++.++..+..+...+++++++++ ++. +..++++.+|+|.++...+..++......
T Consensus 162 w~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 225 (390)
T TIGR02718 162 QRPAFLLVACVPLASLVCVLWLKDRAVASPEA-PLA---------------RRASLFRFFRRPLAWSLLALALLSAMTAV 225 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-chh---------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 99999999988877666655554443221111 000 01246678899998888888888888888
Q ss_pred HHHHhhHHHHHHhhcCCccchhhhhhhhHH-HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhH-HHHHHHHh-h--
Q 010343 339 ILLTWMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL-GPAFFLTQ-L-- 413 (512)
Q Consensus 339 ~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-- 413 (512)
....+.+.|++| .|+++++.|.+....++ ..+++.++.|++.||+++++. ........ ........ .
T Consensus 226 ~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-------l~~~~~~~~~~~~~~~~~~~~ 297 (390)
T TIGR02718 226 SGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT-------FILGVGLAGSLALLWFAQAAF 297 (390)
T ss_pred HHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 888899999988 69999999999888875 666778999999999998843 22111111 11111111 0
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhchhh-hhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHH
Q 010343 414 SHVDSPAMAVLCMACSQGTDAFSQSGLY-SNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV 491 (512)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~ 491 (512)
..............++....+...+... ...+..++ +++|+.+++.+...++|..++|.++|.++|+.||+..|...+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~ 377 (390)
T TIGR02718 298 WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT 377 (390)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 1112222222222332222233333333 33455555 789999999999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 010343 492 GLYLVGTAV 500 (512)
Q Consensus 492 ~~~~~~~~~ 500 (512)
++.+++.++
T Consensus 378 ~~~l~a~~~ 386 (390)
T TIGR02718 378 VLAVLAILL 386 (390)
T ss_pred HHHHHHHHH
Confidence 777766543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=234.99 Aligned_cols=400 Identities=14% Similarity=0.065 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhc-c--cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh-cCChHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSA-E--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWW 179 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 179 (512)
+.++.+++..++..+..+...+.+|.+.+ + +|++..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 34556666777777787777777777654 4 89999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcc---hhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE---RSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
+++.+++++.+ +++.+++.+++.|++.+...+...+++++++|+++ |++++++.+...++|.++||.+++++.+.
T Consensus 90 ~~g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~ 167 (475)
T TIGR00924 90 MLGHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN 167 (475)
T ss_pred HHHHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887 78888899999999999999999999999998754 88899999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccC---CCCCCCCCChhhhHhhhh----------------ccccC-----------
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHS---SPAEDPQLRPAEKKLIVS----------------SCASK----------- 306 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----------------~~~~~----------- 306 (512)
+||++.|.+.++..++..+......+. .++++++.++++++.... ...+.
T Consensus 168 ~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (475)
T TIGR00924 168 YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT 247 (475)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999998876555544433332221 111111111111000000 00000
Q ss_pred ----------CCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccc----hhhhhhhhHHHHHH
Q 010343 307 ----------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTMAF 372 (512)
Q Consensus 307 ----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~----~g~~~~~~~~~~~~ 372 (512)
..++.....+-.|...+..+.+...+....+....+.++.+.++..+.+... .+++.+...+..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil 327 (475)
T TIGR00924 248 LAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVV 327 (475)
T ss_pred HHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHH
Confidence 0000000111112223445555556666677777777888887754444322 67888889988888
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc---------cCChhHHHHHHHHHHhhhhhhhhchhhhh
Q 010343 373 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS---------HVDSPAMAVLCMACSQGTDAFSQSGLYSN 443 (512)
Q Consensus 373 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
..++..++..|..+|+.-.....+. .++++..++.+.... ...+.++.+...++.........+.....
T Consensus 328 ~~p~~~~~~~~l~~~~~~~~~~~k~--~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~ 405 (475)
T TIGR00924 328 GSPVLAMIWTRLGRKGKDPTTPLKF--TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSW 405 (475)
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8888776666666542111110111 222222222222111 12344555555555555555666666666
Q ss_pred hhhhc-CcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 444 HQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 444 ~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
..+.. ++.||+++|++.....+|..+++.+.....+..++...|...++++++..++.++..+.
T Consensus 406 ~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 406 WTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554 57899999999999999999999999988888888888888888777777666665544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=209.72 Aligned_cols=375 Identities=14% Similarity=0.157 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
+..+..+.+..+----......+.++.+.+++|+|.+.+|++.++..++..+.+++..++..|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444444455677888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc-Cchh
Q 010343 183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPS 261 (512)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~ 261 (512)
.++-... +.+.++..-.+.|.+.+.......+++.+.| +++-+..+|++.+...+|..+++.+...+.++. |||.
T Consensus 91 ~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 91 ILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 8887665 4678899999999999999999999999999 677899999999999999999999999998887 7999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHH
Q 010343 262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341 (512)
Q Consensus 262 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (512)
.+.+-+.++++..+.++.-..+.+ ......+ ..+-..++++|.-|.+.+.+.+....++...
T Consensus 167 aL~~WAl~allAl~~WlPq~~r~~-~~~~~~~-----------------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~ 228 (395)
T COG2807 167 ALGFWALLALLALLIWLPQALREQ-AASIATK-----------------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVI 228 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhccccc-ccccccc-----------------cccccccccCchhHHHHHHHHhhHHHHHHHH
Confidence 999999999888777765532111 0110000 1112347899999999999999999999999
Q ss_pred HhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHH
Q 010343 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM 421 (512)
Q Consensus 342 ~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (512)
.|+|.++.| .|+|..++|.+.+...+.++..++....+.+|..+++... ...........+.+.. ...+.+++
T Consensus 229 ~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~-----~~~~~~~l~G~~G~~~-~P~~~~~l 301 (395)
T COG2807 229 GWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV-----VLALLLMLVGLVGLLL-APGQLPIL 301 (395)
T ss_pred HHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHHHHHH-hhhhHHHH
Confidence 999999999 6999999999999999999999999999999987775422 1122222222222222 22222222
Q ss_pred HHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec-CcchhHHHHHHHHHHHHHH
Q 010343 422 AVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTA 499 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~~~~~ 499 (512)
. .++++.+.+.........+..+ .++++.++-.|+.+.++++-..+||.+.|++.|. ++|+..+...+.+.++..+
T Consensus 302 w--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 302 W--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred H--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 2 3555555555554444444433 3457899999999999999999999999999998 6788888777777766666
Q ss_pred HHHHhcCCc
Q 010343 500 VWNLFSTGE 508 (512)
Q Consensus 500 ~~~~~~~~~ 508 (512)
.-+...|++
T Consensus 380 ~Gl~a~r~~ 388 (395)
T COG2807 380 FGLRAGRNR 388 (395)
T ss_pred HHhhcchhH
Confidence 655555543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=226.67 Aligned_cols=323 Identities=13% Similarity=0.037 Sum_probs=229.5
Q ss_pred hhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-----CChHH-HHHHHHHHHHHHHHHHHHhh-c
Q 010343 120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWWSIATALTPVAAK-L 192 (512)
Q Consensus 120 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~~~~~~~~~~~~~-~ 192 (512)
.....+.+|.+.+++|+|.+++|+...+ .+...+ .+++|+++||+ ||||. ++.+.++.++...++++... .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3456677899999999999999999765 555555 99999999998 88887 56677777777666666531 1
Q ss_pred ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC--------chhHHH
Q 010343 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--------WPSVFY 264 (512)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------~~~~f~ 264 (512)
+.+.+....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..| ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 556677778888998898999999999999999999999999999999999999999999998888 999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChH---HHHHHHHHHHHHHHHHHHH
Q 010343 265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP---VWALIVSHFCHNWGTFILL 341 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~ 341 (512)
+.++..++..+..++..+|++++++. ++++++. ...++++++++|. ++.+.+..++.....+...
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQEDASV-PKPLTQA-----------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAAT 229 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccc-chhHHHH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 98887777655555444543222111 1111100 0224666777775 7777777777778888889
Q ss_pred HhhHHHHHHhhcCCccchhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHH-HHhhc-cC--
Q 010343 342 TWMPTYYNQVLHFNLTESGLFCVLPW-LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQLS-HV-- 416 (512)
Q Consensus 342 ~~~~~~l~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-- 416 (512)
.++|.|+++ +|++..+.+.+....+ ++.+++.+++|++.||+|+|+. ......+...... ..... ..
T Consensus 230 ~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~ 301 (356)
T TIGR00901 230 VLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA-------LLLFGIVQALTNAGFVWLASNGHH 301 (356)
T ss_pred HHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999998 8999999999888776 5788999999999999998742 2211111111111 11111 11
Q ss_pred -----ChhHHHHHHHHH-HhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHh
Q 010343 417 -----DSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV 464 (512)
Q Consensus 417 -----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 464 (512)
+..+......++ +.+.+...........+..+++++|+.+|+.+...+
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 302 DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 223333333333 333343444444444455677899999999887664
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=262.08 Aligned_cols=374 Identities=17% Similarity=0.134 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHhhhhh-hhhhhhhhhhcccCCC--hhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRV-NMSIAILPMSAEFNWN--PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
+..++++.++..+... ......+.+..+++.+ ....+++.+++.++..++++++|+++||+|||++++++.++..+.
T Consensus 11 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~ 90 (1146)
T PRK08633 11 FLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGL 90 (1146)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHH
Confidence 3333444444443333 3333445555556654 445799999999999999999999999999999999888766655
Q ss_pred HHHHH---HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc---
Q 010343 183 TALTP---VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--- 256 (512)
Q Consensus 183 ~~~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--- 256 (512)
.++.. ... +++.++++|++.|++.+...+...+++.|++|+++|++++|+...+..+|.++|+++++++.+.
T Consensus 91 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~ 168 (1146)
T PRK08633 91 TLLIVLAYYLG--WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNG 168 (1146)
T ss_pred HHHHHHHHHHc--cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54443 334 7899999999999999999999999999999999999999999999999999999999999876
Q ss_pred -----c-CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHH
Q 010343 257 -----F-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSH 330 (512)
Q Consensus 257 -----~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (512)
+ +|.+.+.+..+...+..++..+..++.+.......+.+.. .........++.++++|.++...+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (1146)
T PRK08633 169 NTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKY-------LFPKLLWRNLKLLRSDRVLWLAIIGL 241 (1146)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccccccc-------ccHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2 3444444444333333333333334433222111000000 00000123567788899988888877
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhcCCcc-chhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHH
Q 010343 331 FCHNWGTFILLTWMPTYYNQVLHFNLT-ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF 409 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (512)
++..........++|.|+.+.+|++.. ..+++.+..+++.+++.++.+++.||+++++.... +.++.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~---------~~~~~~~~ 312 (1146)
T PRK08633 242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPL---------GALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhH---------HHHHHHHH
Confidence 777777778888999999998999998 99999999999999999999999999987753221 11111111
Q ss_pred HHhhccCChhHHH-HHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec-CcchhHH
Q 010343 410 LTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVF 487 (512)
Q Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~-~g~~~~~ 487 (512)
++.+....+.+.. +..++.+.+.+....+.........+++.+|+++|+.+.+..+|..+++.+++.+... .++...+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~ 392 (1146)
T PRK08633 313 LFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLF 392 (1146)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 1111122233333 3334444444433333333334455668899999999999999998888887766542 3444555
Q ss_pred HHHHHHHHHH
Q 010343 488 KVSVGLYLVG 497 (512)
Q Consensus 488 ~~~~~~~~~~ 497 (512)
++.+.+.++.
T Consensus 393 ~~~~~~~~~~ 402 (1146)
T PRK08633 393 YLIALVTLIG 402 (1146)
T ss_pred HHHHHHHHHH
Confidence 5555444333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=244.45 Aligned_cols=281 Identities=16% Similarity=0.224 Sum_probs=225.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
+.+.+.++...+........++.+.++++++..+.|++.+.+.+++.++.++.|++.||+|||+++.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 44455677777778888888999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHh-------------------------------------------------hcChHHHHHHHHHHhhhhhchhhHHHH
Q 010343 187 PVAA-------------------------------------------------KLGLPFLLVVRVFMGIGEGVAMPAMNN 217 (512)
Q Consensus 187 ~~~~-------------------------------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~ 217 (512)
++.+ +..+..++++|+++|+|.+...+...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 7753 012456788999999999999999999
Q ss_pred HHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc----------------------CchhHHHHHHHHHHHHHH
Q 010343 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF----------------------GWPSVFYSFGSLGTVWFT 275 (512)
Q Consensus 218 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------g~~~~f~~~~~~~~~~~~ 275 (512)
++.|++|+++|++++++++....+|.++|+++++++.+.+ +|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988643 267778888888877766
Q ss_pred HHhhhccCCCCCCCCCC--hhhhHhhhhccccC-------CCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 276 VWLSKAHSSPAEDPQLR--PAEKKLIVSSCASK-------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 276 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
.++.++++.|++..+.+ ..+.+......++. .......++.+++||.++...+..++......++..++|.
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~ 355 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK 355 (633)
T ss_pred HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544332211110 00000000000000 0011234678999999999999999999999999999999
Q ss_pred HHHHhhcCCccchhhhhhhhHH-HHHHHHHHHHHHHHHHHhc
Q 010343 347 YYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSK 387 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~ 387 (512)
|+++.+|+++.+++++.....+ +.+++.+++|++.||++.+
T Consensus 356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 9999999999999999988776 6789999999999999854
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=231.17 Aligned_cols=345 Identities=14% Similarity=0.092 Sum_probs=239.4
Q ss_pred hhhhhhhh-hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh----cCChH-HHHHHHHHHHHHHHHHHHHhhc
Q 010343 119 DRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKA-VLGFGVVWWSIATALTPVAAKL 192 (512)
Q Consensus 119 ~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~~~ 192 (512)
........ .+.+.+++|+++.++|++.++..+..++..++.|+++|| +|||| .++.+....+++.+++.+.++.
T Consensus 14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~ 93 (437)
T TIGR00792 14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF 93 (437)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence 33444443 555778899999999999999999999999999999998 67755 5667878888887777665521
Q ss_pred C----hHHHHHHHHHHhhhhhchhhHHHHHHhccc-CCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-------ccCch
Q 010343 193 G----LPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWP 260 (512)
Q Consensus 193 ~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~ 260 (512)
+ ...+++.+++.+++.+...++..++..+.. ++++|++..++.+.+..+|..+++.+.+.+.. ..+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 1 356677788889988888888889999887 46899999999999999988887776665542 45899
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
+.+.+.+++.++..++.+...+|++++.+..++ ++......++.++++|.++...+..++........
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERYSEIPKNIE------------KKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK 241 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc------------cCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999998888887776666655554321111000 00011235677889999998888888877777766
Q ss_pred HHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhH
Q 010343 341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 420 (512)
Q Consensus 341 ~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
..+.+.|.+..++ +....+.+.....++.+++.++.+++.||+|+|+. ......+............ +..+
T Consensus 242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~ 312 (437)
T TIGR00792 242 NGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL-------FAGGILLMVLGYLIFFFAG-SNLP 312 (437)
T ss_pred cchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHHcc-hhHH
Confidence 6666666665555 45667777788889999999999999999998843 2222222222222222211 2333
Q ss_pred HHHHHHHHHhhhhhhhhchhhhhhhhh--------cCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcch
Q 010343 421 MAVLCMACSQGTDAFSQSGLYSNHQDI--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 484 (512)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~ 484 (512)
......++.+...+...+.......+. +++.+|.+.|+.+....+|..+++.+.|.+.+..||.
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 313 LILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333333333333333444443332 2456899999999999999999999999999887764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=221.44 Aligned_cols=401 Identities=15% Similarity=0.144 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhh-hhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh-cCChHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWW 179 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 179 (512)
+++.++.+++..+...+..+.....++ ++.+++|.+..+.+++.+.+.....+..+++|+++|| +||||++.++.+++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 455566677777777777776666544 4677899999999999999998899999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhcChH-HHHHHHHHHhhhhhchhhHHHHHHhcccCCc--chhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 180 SIATALTPVAAKLGLP-FLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~-~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
+++.+.+++.. +.. .+++.|+++|+|.+...+...+++.|.+|++ +|+++++++....++|..+||.+++++.++
T Consensus 92 ~~g~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~ 169 (489)
T PRK10207 92 AIGYFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK 169 (489)
T ss_pred HHHHHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876 433 4558899999999999999999999999877 457899999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCC--CCCCChhh-hHhh------------hhc-cccCCCC-----------
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE--DPQLRPAE-KKLI------------VSS-CASKEPV----------- 309 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~------------~~~-~~~~~~~----------- 309 (512)
+|||+.|++.++..++..+......+..++. +.+.++.+ .... ... .+.....
T Consensus 170 ~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (489)
T PRK10207 170 FGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVV 249 (489)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999986553333332222222111110 11010000 0000 000 0000000
Q ss_pred ------CCchHHHhhcChHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHhhcCCc----cchhhhhhhhHHHHHHHHHHH
Q 010343 310 ------KTIPWGLILSKPPVWALIVS--HFCHNWGTFILLTWMPTYYNQVLHFNL----TESGLFCVLPWLTMAFSANLG 377 (512)
Q Consensus 310 ------~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~ 377 (512)
.....++.+|+|.+....+. ..+....+......++.+.++..+.+. ...+.+.+...+..++..++.
T Consensus 250 ~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~ 329 (489)
T PRK10207 250 TIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPIL 329 (489)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHH
Confidence 00000134455554443322 344445555565777888775333221 122344455667777888889
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHH-----Hhhc----cCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhc
Q 010343 378 GWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL-----TQLS----HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA 448 (512)
Q Consensus 378 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (512)
+++.||+++|+.-.....+......+...+... .... ..+.++.....++.+.+.....++.........|
T Consensus 330 ~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP 409 (489)
T PRK10207 330 AGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVP 409 (489)
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCh
Confidence 999999998863211111222211111111110 1111 1123344444455555555555555666667777
Q ss_pred CcchhhHHHHHHHHHhHHHHHHHHhhhheee----------cCcchhHHHHHHHHHHHHHHHHHHh
Q 010343 449 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQ----------HGSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 449 ~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
++.+|.++|+.+...++|+.++..+++.... ...+...|...++..+++.++++..
T Consensus 410 ~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 410 QHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988865531 1125677777776666555555443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=214.62 Aligned_cols=374 Identities=13% Similarity=0.121 Sum_probs=269.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcC-ChHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-GKAVLGFGVVWWSIATALTP 187 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~ 187 (512)
+...+|+.++..+.+.|.++.+.++.|+|..|+|.+.++..+..+++++++|.++||++ +||++.+..++.++......
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777788889999999999999999999999999999999999999999986 57777777777777766666
Q ss_pred HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHH-HHHhcccC---chhHH
Q 010343 188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS-PFLIHRFG---WPSVF 263 (512)
Q Consensus 188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~-~~l~~~~g---~~~~f 263 (512)
... +++.+++..++..+......|..+++..+... ++++-.|.....+++|.+++.... +.+....+ ....+
T Consensus 87 ~~~--~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
T PF03825_consen 87 FSS--SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIF 162 (400)
T ss_pred Hhc--cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 666 78888888888898888889999999998874 567778889999999998886552 33333333 23455
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHh
Q 010343 264 YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTW 343 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 343 (512)
++.++..++.....+.. |+.|.+++..++.++. ...+..+++|+|++..+++..++.......+..+
T Consensus 163 ~i~~~~~~ll~~~~l~l-p~~~~~~~~~~~~~~~------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f 229 (400)
T PF03825_consen 163 YIAAILSLLLAGFALFL-PKTPPKRSAKESVKKL------------LGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTF 229 (400)
T ss_pred HHHHHHHHHHHHHHHhC-CCCccccccCCCcccc------------cchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 65555554444333333 3333211111111100 0123346899999999999999999999999999
Q ss_pred hHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccC-ChhHH-
Q 010343 344 MPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV-DSPAM- 421 (512)
Q Consensus 344 ~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 421 (512)
.+.|+++..|.+....+.+.++..+++++.-...+++.+|+|.+ .++.++.+..++-....... ++.+.
T Consensus 230 ~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~~~~~~~~ 300 (400)
T PF03825_consen 230 FSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYFSDPWPFI 300 (400)
T ss_pred HHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999995337888889888999999999999999999999988 45556666666655554443 33222
Q ss_pred HHHHH----HHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHH-HhHHHHHHHHhhhheeecCcchh------HHHHH
Q 010343 422 AVLCM----ACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTA-GVLAGVFGTAATGYILQHGSWDD------VFKVS 490 (512)
Q Consensus 422 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~ig~~l~g~l~~~~g~~~------~~~~~ 490 (512)
..... ..+..++...........+..|++.|++++++++.. ..+|..+|..++|+++|+.|.+. .+.+.
T Consensus 301 ~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~ 380 (400)
T PF03825_consen 301 VALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVF 380 (400)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 22222 245555555555555555666778899999998865 57999999999999999977554 45555
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 010343 491 VGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ 508 (512)
+++.++..+++.++.|++
T Consensus 381 a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 381 AVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHhhccCC
Confidence 555555555555554443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=202.40 Aligned_cols=359 Identities=16% Similarity=0.067 Sum_probs=236.1
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhh
Q 010343 129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE 208 (512)
Q Consensus 129 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 208 (512)
...+..+.+....|.+.+.+.++..+.++.+|.++||+|||.++.++.+..++...+.+.+. |+..+++.|++.|+..
T Consensus 58 a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~k 135 (451)
T KOG2615|consen 58 AIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFK 135 (451)
T ss_pred hhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhcc
Confidence 34444556777899999999999999999999999999999999999999999999999999 8877777799999998
Q ss_pred hchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc---ccCchhHHH---HHHHHHHHHHHHHhhhcc
Q 010343 209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFGWPSVFY---SFGSLGTVWFTVWLSKAH 282 (512)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~f~---~~~~~~~~~~~~~~~~~~ 282 (512)
+ ......++++|.+++|+|+++++.+...+++|.++||.++|++.+ ..|-.+.++ +..++...-.....++.|
T Consensus 136 g-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp 214 (451)
T KOG2615|consen 136 G-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP 214 (451)
T ss_pred C-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7 456778999999999999999999999999999999999999987 333211111 111222221222333344
Q ss_pred CCCCCCCCCChhh-hHhhhhccccCCCCCCchHHHhhcChHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHhhcC
Q 010343 283 SSPAEDPQLRPAE-KKLIVSSCASKEPVKTIPWGLILSKPPVW-------ALIVSHFCHNWGTFILLTWMPTYYNQVLHF 354 (512)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~ 354 (512)
|+-+.+++.++.. .....++.++..+.+...--...+|++.. .+.+..+++...+..+..+...+..+.+|+
T Consensus 215 ETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ 294 (451)
T KOG2615|consen 215 ETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGY 294 (451)
T ss_pred ccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCC
Confidence 4322222211100 00000000111111111111233444322 233344444444555555555555667899
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhh
Q 010343 355 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA 434 (512)
Q Consensus 355 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (512)
++.+.|.+++..++.+.+.+....+..+|.+.. ....+...+..+.-.++................+-.+...
T Consensus 295 ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A 367 (451)
T KOG2615|consen 295 SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA 367 (451)
T ss_pred ChhhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence 999999999999999988888877777776522 1123333333333344444444444555555555555566
Q ss_pred hhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeec-CcchhHHHHHHHHHHHH
Q 010343 435 FSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVG 497 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~~~ 497 (512)
...+....+.....| ++||+++|+....+.++.++||.++|.+..+ -+-+..+...+.+.+..
T Consensus 368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 666677777666655 7999999999999999999999999999887 33344444444444443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=204.22 Aligned_cols=387 Identities=10% Similarity=0.035 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH--H
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW--S 180 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~ 180 (512)
+..+.....++..++..+...++.+.+.++ .|+|.+++|.+.++..+...+.+++.|.+.||.|.||-++...... .
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence 345555666667777788888888886664 8999999999999999999999999999999999666544333222 1
Q ss_pred -HHHHHHHHHh--hcChH-HHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 181 -IATALTPVAA--KLGLP-FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 181 -~~~~~~~~~~--~~~~~-~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
...+...+.+ +.|.+ ..+++.+..|+......|...+++.+.. ++.+.-.|-..+++++|.+++..++|.+.+
T Consensus 87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~- 163 (412)
T PF01306_consen 87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN- 163 (412)
T ss_dssp CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-
Confidence 2222222221 11332 3334444556666666677777776664 556778899999999999999999999986
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHH
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG 336 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (512)
.+.+..|++....+++..++.+..+++.+++.+..+..+.+ +++.+..+..+++|+|++|.+.+........
T Consensus 164 i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~ 235 (412)
T PF01306_consen 164 INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI 235 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------HHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 45677888766666655555555554433222111110000 0111123456789999999999888888778
Q ss_pred HHHHHHhhHHHHHHhh---cCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 337 TFILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL 413 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (512)
+..+....+.|....+ +.+....|.+.+...+.+++...+.+++.+|+|.|+ .+.++..+..+-....
T Consensus 236 Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~---------~Lllag~i~~iRi~~~ 306 (412)
T PF01306_consen 236 YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN---------LLLLAGVIMAIRIIGS 306 (412)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh---------HHHHHHHHHHHHHHHH
Confidence 8888877888877532 345567899999999999999999999999999983 3333344455555555
Q ss_pred ccCChhHHHHHH-HHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHH-HHHHhHHHHHHHHhhhheeecCcchhHHHHHH
Q 010343 414 SHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGSWDDVFKVSV 491 (512)
Q Consensus 414 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~ 491 (512)
...++++.+... .+.+.-.........-.+.+..+++..++...+. +...++|..+.+.++|.++|+.|++..|++.+
T Consensus 307 ~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg 386 (412)
T PF01306_consen 307 GFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMG 386 (412)
T ss_dssp HT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHH
Confidence 555555555544 4444444444444455555666667788888885 58889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccc
Q 010343 492 GLYLVGTAVWNLFSTGEKV 510 (512)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~ 510 (512)
.+.++..++..+..+++|+
T Consensus 387 ~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 387 LIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHheeeecCCCc
Confidence 8888877777776665554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=199.06 Aligned_cols=342 Identities=13% Similarity=0.089 Sum_probs=243.2
Q ss_pred hhhhhhhhhhhhhcccCCChhh-HHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 010343 119 DRVNMSIAILPMSAEFNWNPAT-VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL 197 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (512)
.+.......|.+.+++|+|.+| .|.+.+++..++++++++.|+++||+|.|+++.++.+.+++..++.+++. ++..+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~L 118 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWHM 118 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 4778888899999999999999 99999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH---HHHHHHHH
Q 010343 198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF---GSLGTVWF 274 (512)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~---~~~~~~~~ 274 (512)
.+.|++.|++.+... +...++..++|+++|+++.|+..++..+|.+++++++++ ...+|||+-+.+. .....+++
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~ 196 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV 196 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999 5568999765543 22223333
Q ss_pred HHHhhhccCCCCC----CCC-CC---hhhhHhhhhccc--cCC-CC---------CCchHHHhhcChHHHHHHHHHHHHH
Q 010343 275 TVWLSKAHSSPAE----DPQ-LR---PAEKKLIVSSCA--SKE-PV---------KTIPWGLILSKPPVWALIVSHFCHN 334 (512)
Q Consensus 275 ~~~~~~~~~~~~~----~~~-~~---~~~~~~~~~~~~--~~~-~~---------~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (512)
++. ++.|..++. +++ .+ ..+.+....+.. ..+ ++ -...++...+||.++...+-..+..
T Consensus 197 ~~a-~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~ 275 (511)
T TIGR00806 197 FLA-LFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS 275 (511)
T ss_pred HHH-HhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence 333 333332221 000 00 000000000000 000 00 0123455678888888888888888
Q ss_pred HHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc
Q 010343 335 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 414 (512)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (512)
.+++.+..|.....++.-+-....-|.+-++..+.+.+..+..|++-.++.+. ....+.+..++.+.+++...
T Consensus 276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~ 348 (511)
T TIGR00806 276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMS 348 (511)
T ss_pred hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhh
Confidence 88888888887777664332223667788888888888999999886555332 22444444455555566666
Q ss_pred cCChhHHHHHHHHHHhhhh-hhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHH
Q 010343 415 HVDSPAMAVLCMACSQGTD-AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTA 472 (512)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~ 472 (512)
..++.|...+..++..... .........+......|.-|.++|+++.+.-+-..+-..
T Consensus 349 ~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 349 QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITA 407 (511)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence 6667666666555544444 444444444556666677899999988766555544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=205.35 Aligned_cols=392 Identities=15% Similarity=0.106 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh-cCChHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~ 182 (512)
.++.++...++..+..+.+...++. +.+++|++..+.+++.+.+........+++|+++|| +|||+.+..+.++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3455556666666666666666555 568899999999999888877767777899999999 59999999999999999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcc--hhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
..++.++.+ +.+.+++.++++|++.+...+...+++.+++|+++ |..++++++.+.++|..+||.+++++.+++|||
T Consensus 102 ~~l~~~~~~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~ 180 (500)
T PRK09584 102 YALVAWSGH-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS 180 (500)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 888887642 45667788999999999999999999999997653 456889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHh---hhccCCCCCCCCCChhhhHhhh-----------hc--cccCCC-C--------------
Q 010343 261 SVFYSFGSLGTVWFTVWL---SKAHSSPAEDPQLRPAEKKLIV-----------SS--CASKEP-V-------------- 309 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~-~-------------- 309 (512)
+.|.+.++..++..+..+ ...++..++.+..+.+...... .. ..+.+. .
T Consensus 181 ~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (500)
T PRK09584 181 VAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIF 260 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999987765444333222 2222221111100000000000 00 000000 0
Q ss_pred --CCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--hhcCCc------cchhhhhhhhHHHHHHHHHHHHH
Q 010343 310 --KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ--VLHFNL------TESGLFCVLPWLTMAFSANLGGW 379 (512)
Q Consensus 310 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~--~~g~~~------~~~g~~~~~~~~~~~~~~~~~g~ 379 (512)
.....++.- +++.+.. +..++....++......+.++.. ..+.+. ...+++.+...+..++..++.++
T Consensus 261 ~~~~~~~~~~~-~~~~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~ 338 (500)
T PRK09584 261 GKEAFAMKGAA-RRKMIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAA 338 (500)
T ss_pred HHHHhhcCHHH-HHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHH
Confidence 000000111 1222222 22223334444555555555443 112221 22566777788788888888777
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc--------CChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCc
Q 010343 380 IADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--------VDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPR 450 (512)
Q Consensus 380 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (512)
+-+|.++|.... .+..+...+...+...+.... .+.++.....++.+.+.. ...+....+. +..|++
T Consensus 339 ~~~~l~~r~~~~---~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~-~~~p~g~s~~~~~aP~~ 414 (500)
T PRK09584 339 IYNKMGDRLPMP---HKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL-MISGLGLAMVAQLVPQR 414 (500)
T ss_pred HHHHhCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCcHH
Confidence 777776553211 222222222222222221111 112344444444444444 4444444444 555567
Q ss_pred chhhHHHHHHHHHhHHHHHHHHhhhheee----------cCcchhHHHHHHHHHHHHHHHHHH
Q 010343 451 YSGVLLGLSNTAGVLAGVFGTAATGYILQ----------HGSWDDVFKVSVGLYLVGTAVWNL 503 (512)
Q Consensus 451 ~~g~~~g~~~~~~~~g~~ig~~l~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 503 (512)
.||+++|+......+|..++..+.+.... ..++...|...+++.++..++.+.
T Consensus 415 ~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 415 LMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998887777777777666653221 124778887777766554444444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=202.93 Aligned_cols=362 Identities=14% Similarity=0.128 Sum_probs=248.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 188 (512)
+++.....++........++.+..++|- .....|+.+...++..+..++.|+++|.+|||.+++.+.++..++.+.++-
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3444444445555556667889999995 478889999999999999999999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHH
Q 010343 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268 (512)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 268 (512)
++ |...++++..+.|+|.|... .....++|..|.|.|....++...........++.++..+..+.+|||.|++..+
T Consensus 128 A~--~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i 204 (599)
T PF06609_consen 128 AQ--NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII 204 (599)
T ss_pred CC--cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence 99 99999999999999977655 4566689999999998888877776666666788888877777799999999988
Q ss_pred HHHHHHHHHhhhccCCCCCC--CC-CChhhh-Hhh--------------------hhcc-----cc--------------
Q 010343 269 LGTVWFTVWLSKAHSSPAED--PQ-LRPAEK-KLI--------------------VSSC-----AS-------------- 305 (512)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~--------------------~~~~-----~~-------------- 305 (512)
...+.+++.+++..++++++ .+ ..+.+. +.. .... +.
T Consensus 205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L 284 (599)
T PF06609_consen 205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL 284 (599)
T ss_pred HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH
Confidence 87776655444433332211 11 111111 000 0000 00
Q ss_pred ------C---CCCCCchHHHhhcC-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCcc---chhhhhhhhHHHHHH
Q 010343 306 ------K---EPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT---ESGLFCVLPWLTMAF 372 (512)
Q Consensus 306 ------~---~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~---~~g~~~~~~~~~~~~ 372 (512)
+ .+++..--.+++++ |.+...++..++....++....+.|......++-++. ..++.....+++..+
T Consensus 285 v~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~ 364 (599)
T PF06609_consen 285 VAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCA 364 (599)
T ss_pred HHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHH
Confidence 0 11111112346676 5566666677777777888888889888877776653 567888888999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH-hhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcc
Q 010343 373 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 451 (512)
Q Consensus 373 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (512)
+.++.|.+..++++-|.. .+....+....+..+ .....+........++.+.+.+....+......-..++++
T Consensus 365 g~~i~g~l~~~ir~~Kw~------li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ 438 (599)
T PF06609_consen 365 GAVILGLLFSKIRHIKWQ------LIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED 438 (599)
T ss_pred HHHHHHHHHHHccchhHH------HHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence 999999999888766421 111111111112222 2222222233333344444444444444444445566789
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 452 SGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 452 ~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
.|++.|+...+..+|+.+|..+..-+...
T Consensus 439 ig~a~gL~~s~R~~GGsIg~aIy~~I~~n 467 (599)
T PF06609_consen 439 IGTATGLTGSIRSIGGSIGYAIYNAIFTN 467 (599)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999988766543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=194.24 Aligned_cols=374 Identities=14% Similarity=0.119 Sum_probs=253.8
Q ss_pred hcccC--CChhh----HHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHH
Q 010343 131 SAEFN--WNPAT----VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK-LGLPFLLVVRVF 203 (512)
Q Consensus 131 ~~~~g--~s~~~----~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l 203 (512)
.+++| .+..+ .+.+.+++.+|.+++++..|.++||+|||..+.++.++..++.++..++.. .++..++++|++
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i 125 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI 125 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455 44444 466777999999999999999999999999999988888877776655432 167899999999
Q ss_pred HhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHH-HHh-cccCchhHHHHHHHHHHHHHHHHhhhc
Q 010343 204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP-FLI-HRFGWPSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~-~l~-~~~g~~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
.|+..+.......-++.|..|++.||..-...+.+..+|..++..++. .+. +...|++.+.+..+.+++..+...+ .
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~-~ 204 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF-L 204 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc-C
Confidence 999999999999999999999999999999999999999999966553 333 3345999999888887777665555 4
Q ss_pred cCCCCC----CCCCChhh---------------hHhhhhccc--cCCCCCCchHHHhhcChHHHHHHHHHHHHHH-----
Q 010343 282 HSSPAE----DPQLRPAE---------------KKLIVSSCA--SKEPVKTIPWGLILSKPPVWALIVSHFCHNW----- 335 (512)
Q Consensus 282 ~~~~~~----~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 335 (512)
||+|+- +.+.++.+ .+...++.+ +.++++..+++++++++..+.-....+...+
T Consensus 205 PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~s 284 (485)
T KOG0569|consen 205 PESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFS 284 (485)
T ss_pred CCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhc
Confidence 555531 11111110 000011111 1222356788999998876654333322222
Q ss_pred HHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 336 ~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
+.+....|...++++ .|++..++.+.....++..++..+++.++.||.|||++++.+.. ...+..+...........
T Consensus 285 Gi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~--~~~~~~~~~~~~~~l~~~ 361 (485)
T KOG0569|consen 285 GINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS--LMAVALLLMSIALFLSNS 361 (485)
T ss_pred CcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 234455666666666 69999999999999999999999999999999999965544321 111111111111111111
Q ss_pred CChhH--H-HHHHHHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHH
Q 010343 416 VDSPA--M-AVLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV 491 (512)
Q Consensus 416 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~ 491 (512)
...+. . +...+.....+.....+..+-+..|. +++.|+.++++......+..++-....-.+.+..|. ..|+...
T Consensus 362 ~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~ 440 (485)
T KOG0569|consen 362 FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFV 440 (485)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHH
Confidence 11111 1 22222233333333334444455554 557899999999999999999999999999998886 6677777
Q ss_pred HHHHHHHHHHHHhcCCcc
Q 010343 492 GLYLVGTAVWNLFSTGEK 509 (512)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~ 509 (512)
+.+++..+..++..++.|
T Consensus 441 i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 441 IPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHhCcccC
Confidence 777777766666666655
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=187.53 Aligned_cols=392 Identities=13% Similarity=0.144 Sum_probs=253.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHH
Q 010343 98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV 177 (512)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 177 (512)
..+.+|...........-..+.........|.+....|.+..|..++......+..+++..+|.++|++|||+.+.....
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 34456777777767776666666666677788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc
Q 010343 178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF 257 (512)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 257 (512)
...+...+.+..+ |+..+.+.|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.+....+.-.++.++
T Consensus 152 ~t~v~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 152 VTGVFGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred HHHHHHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999 999999999999999998 888899999999999988777666 999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-Chhhh-----Hhh----------------hhccc-----------
Q 010343 258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL-RPAEK-----KLI----------------VSSCA----------- 304 (512)
Q Consensus 258 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~----------------~~~~~----------- 304 (512)
||||.....+....+...+.++ .+++++-.-.. ++.+. +.. ..+.+
T Consensus 228 gwr~~l~~~~~pl~~~a~f~~w-~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~ 306 (528)
T KOG0253|consen 228 GWRYLLFTSSTPLMFAARFLVW-VYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS 306 (528)
T ss_pred hHHHHHHHHHhHHHHHHHHHhh-cccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence 9999998888665555554444 34444311110 10000 000 00000
Q ss_pred cCCCCCCchHHHhhcC---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-----------------hc--CCccchhhh
Q 010343 305 SKEPVKTIPWGLILSK---PPVWALIVSHFCHNWGTFILLTWMPTYYNQV-----------------LH--FNLTESGLF 362 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-----------------~g--~~~~~~g~~ 362 (512)
...+....+...++.. +....++...+...+.+++..-......+.. .+ .+...--.=
T Consensus 307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd 386 (528)
T KOG0253|consen 307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD 386 (528)
T ss_pred ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence 0011112223333321 1222233333434444444333322222221 00 111111112
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHh-hccCChhHHHHHHHHHHhhhhhhhhchhh
Q 010343 363 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ-LSHVDSPAMAVLCMACSQGTDAFSQSGLY 441 (512)
Q Consensus 363 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
.....+....|.++.+++.||+|||+ .++..++..+++++. ....+... ..+..+.+-++........+
T Consensus 387 llitslaefPGlLIt~~iverlGRKk---------TMal~l~~f~iflfll~~c~~rn~-~tvllf~arafisg~fqvaY 456 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKK---------TMALSLILFGIFLFLLTTCKTRNA-YTVLLFTARAFISGAFQVAY 456 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHhchheEEE
Confidence 23456788899999999999999994 223333333333322 22222222 22333333334444456667
Q ss_pred hhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 442 SNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 442 ~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
.+..++.| ..|+++.|.......+|+++.|+++ ...+..- .....+.+++++++.+...++.-
T Consensus 457 vYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~-sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 457 VYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELST-SLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred EecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccce-eehHHHHHHHHHHHHHHheeeee
Confidence 77777777 6799999999999999999999998 4444433 34444455555555555544433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=205.26 Aligned_cols=397 Identities=16% Similarity=0.104 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHhhh--hhhhhhhhhhhhccc-----CCCh--hhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHH
Q 010343 106 VVLCFSAFLLCNMD--RVNMSIAILPMSAEF-----NWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV 176 (512)
Q Consensus 106 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 176 (512)
........+..+.+ ..........+.++. ..+. .+.+++.+...++..++++++|+++|++|||+.++++.
T Consensus 47 ~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~ 126 (513)
T KOG0254|consen 47 ALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAV 126 (513)
T ss_pred HHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33334444444443 344444455555432 2222 35599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 177 VWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
+.+.++.+++++++ |++.++++|++.|+|.|........+++|..|++.||...+..+....+|..++..++....+.
T Consensus 127 ~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~ 204 (513)
T KOG0254|consen 127 VLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV 204 (513)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999995544444322
Q ss_pred -cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-ChhhhHhhhh--cc-------------------ccCCCCCCch
Q 010343 257 -FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL-RPAEKKLIVS--SC-------------------ASKEPVKTIP 313 (512)
Q Consensus 257 -~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-------------------~~~~~~~~~~ 313 (512)
.+||..+.+..+.+++..+. ..+.|++|+...+. +..+.+.... .. +.....+...
T Consensus 205 ~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
T KOG0254|consen 205 YAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKAS 283 (513)
T ss_pred CccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccccc
Confidence 48999999888888887777 66667666432111 1111100000 00 0000011112
Q ss_pred HHHhhc----ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 010343 314 WGLILS----KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL 389 (512)
Q Consensus 314 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 389 (512)
++++++ ++.+..+.+..+....+......|.+.+++. .|.+... .......++..+++..+...+.||+|||+.
T Consensus 284 ~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l 361 (513)
T KOG0254|consen 284 WGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL 361 (513)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 333333 2223334444444444556666777888776 4666443 555566777788888888999999999965
Q ss_pred chhhHHHHHHHHHhHHHHHHHHhhcc-----CChhHH-HHHHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHH
Q 010343 390 SVTTVRKIMQSIGFLGPAFFLTQLSH-----VDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTA 462 (512)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 462 (512)
++.+.... .++.++.+........ ....++ .....+....+.....+..+.+..+..| +.|+++.++....
T Consensus 362 ll~s~~~m--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~ 439 (513)
T KOG0254|consen 362 LLFGAAGM--SICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAV 439 (513)
T ss_pred HHHhHHHH--HHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHH
Confidence 55443222 2222222221111111 111222 2223333333333344444556666666 7899999999988
Q ss_pred HhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHH-HHHHhcCCcc
Q 010343 463 GVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA-VWNLFSTGEK 509 (512)
Q Consensus 463 ~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 509 (512)
..+...+-....-.+.+..+....|...++++.+... ....+.++.|
T Consensus 440 n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 440 NWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 8887777666655555554434455555555555444 3444444433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=191.53 Aligned_cols=394 Identities=13% Similarity=0.030 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHh----hcCChHHHHHH-HH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAVLGFG-VV 177 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~ 177 (512)
|+++.+.. ..+-..+........++.+.+++|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .+
T Consensus 4 ~~li~~~~-~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 4 RKLLRVAS-VAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 44443333 33344566777777788888999999999999999999999999999999999 59999998764 66
Q ss_pred HHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcch--hHHHHHHHHh
Q 010343 178 WWSIATALTPVAAKLGL-----------------PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSG 238 (512)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-----------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~ 238 (512)
...++.++++++. +. +..+++..+..++.....++..++++|.+|+++| +.++++.+.+
T Consensus 83 ~~~~~l~ll~~~~--~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~ 160 (477)
T TIGR01301 83 LVAFAVILIGFAA--DIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFF 160 (477)
T ss_pred HHHHHHHHHHhCc--hhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence 6666667776655 32 2333444455668888888999999999998865 6899999999
Q ss_pred hhhHHHHHHhHHHHH--hccc-------------CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhcc
Q 010343 239 MYLGSVTGLAFSPFL--IHRF-------------GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC 303 (512)
Q Consensus 239 ~~~g~~~g~~~~~~l--~~~~-------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (512)
.++|.++|+.+++.. .+.+ +.+..|++.+++.++..++..+..+|.+...++..++++. ++
T Consensus 161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~---~~- 236 (477)
T TIGR01301 161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA---AP- 236 (477)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc---cc-
Confidence 999999999999875 2221 5688999988888888887777777754322111100000 00
Q ss_pred ccCCCCCCchHHHh----hc-ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhcCCccc----------hhhhhhhhH
Q 010343 304 ASKEPVKTIPWGLI----LS-KPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-VLHFNLTE----------SGLFCVLPW 367 (512)
Q Consensus 304 ~~~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~----------~g~~~~~~~ 367 (512)
.++......++++ .+ .|.++.+++..++..+++..+..|.+.|..+ .++.++.. ..+....+.
T Consensus 237 -~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s 315 (477)
T TIGR01301 237 -PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNS 315 (477)
T ss_pred -ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 0000001122222 22 4678899999999999999999999888764 45543321 123344555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHh-hcc-C--------------C----hhHHHHHHHH
Q 010343 368 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ-LSH-V--------------D----SPAMAVLCMA 427 (512)
Q Consensus 368 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--------------~----~~~~~~~~~~ 427 (512)
+...+.+++..++.+|+|++|. .......+...++.... ... . + .....+.+..
T Consensus 316 ~~~~i~s~~l~~l~~~~g~~k~------~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (477)
T TIGR01301 316 VVLGITSIGMEKLCRGWGAGKR------LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI 389 (477)
T ss_pred HHHHHHHHHHHHHHHHhccchh------HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence 6666777788888999985422 11222111111111111 110 0 0 1233333444
Q ss_pred HHhhhhhhhhchhhhhhhhhcC--cchhhHHHHHHHHHhHHHHHHHHhhhheeecC--cchhHHHHHHHHHHHHHHHHHH
Q 010343 428 CSQGTDAFSQSGLYSNHQDIAP--RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG--SWDDVFKVSVGLYLVGTAVWNL 503 (512)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~ 503 (512)
+|...............+..++ +..|..+|+.|.+..+.+.+.....|.+.+.. +...++.+.++..+++.++.++
T Consensus 390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455553 46799999999999999999999999855553 4567888888888888888877
Q ss_pred hcCCccc
Q 010343 504 FSTGEKV 510 (512)
Q Consensus 504 ~~~~~~~ 510 (512)
..++.+.
T Consensus 470 ~~~~~~~ 476 (477)
T TIGR01301 470 LLPRPRV 476 (477)
T ss_pred hCCCCCC
Confidence 7776553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-21 Score=194.31 Aligned_cols=401 Identities=14% Similarity=0.089 Sum_probs=271.5
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHH
Q 010343 99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW 178 (512)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 178 (512)
..+||..+........+.+. .+.++.+.+.+.+++|+|..+++++.++. .....++++.|++.||+|+|+++.++.++
T Consensus 23 e~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34677766666655554433 45666778889999999999999998874 44556788899999999999999999999
Q ss_pred HHHHHHHHHHHhh----cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh
Q 010343 179 WSIATALTPVAAK----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254 (512)
Q Consensus 179 ~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 254 (512)
++++.++++++.. .+++.+++.|++.|++.+...+.....+.+++| ++||++.|+...+.++|.++.+.+...+.
T Consensus 101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998721 178999999999999999999999999999995 78999999999999999986544444443
Q ss_pred cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCC-----CCChhhhH------------------h-------------
Q 010343 255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP-----QLRPAEKK------------------L------------- 298 (512)
Q Consensus 255 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------~------------- 298 (512)
. .+|+..|++.+++.++..++.+.+.++++.... +.+++++. .
T Consensus 180 ~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~y 258 (591)
T PTZ00207 180 S-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVF 258 (591)
T ss_pred H-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHH
Confidence 3 368888888888888877776666555442211 11111111 0
Q ss_pred ------------------------hh------h--------------c-c-----------------c---------c-C
Q 010343 299 ------------------------IV------S--------------S-C-----------------A---------S-K 306 (512)
Q Consensus 299 ------------------------~~------~--------------~-~-----------------~---------~-~ 306 (512)
.. . + . . + .
T Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (591)
T PTZ00207 259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYI 338 (591)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCC
Confidence 00 0 0 0 0 0 0
Q ss_pred CCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccc--hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010343 307 EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE--SGLFCVLPWLTMAFSANLGGWIADTL 384 (512)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~ 384 (512)
.+.....+.+.+++.++|.+++..++.......+...+..+.+..-|.+... ...+.++.++++.+|++..|.+....
T Consensus 339 ~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~ 418 (591)
T PTZ00207 339 APQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS 418 (591)
T ss_pred CCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH
Confidence 0111126677788999999999999888877777778888777732663322 33378999999999999999988433
Q ss_pred HhcCC---chhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHH
Q 010343 385 VSKGL---SVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNT 461 (512)
Q Consensus 385 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 461 (512)
.+|+. ... ...+.+..+.....+++....+...+.+..++.+.+. +...+.......++..++-|+-.-+...
T Consensus 419 ~~~~~~~r~pr---t~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~-G~~~~~~~~i~selFgk~~g~~yN~~~~ 494 (591)
T PTZ00207 419 QKRRAEDRVPI---TIALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFAN-GFMAATIALVTRTIFAKDPAKHYNFCFL 494 (591)
T ss_pred Hhhccccccch---hHHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHh-hHhHHHHHHHHHHHhccchHHHhhHHhH
Confidence 33321 221 1222222222222222222222123334444444444 4445555566666655888888888777
Q ss_pred HHhHHHHHH-HHhhhheeecC----------c---chhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 462 AGVLAGVFG-TAATGYILQHG----------S---WDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 462 ~~~~g~~ig-~~l~g~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
..-+|..+- -.+.|.++|+- | ++..|++.++++++++++...+.-+
T Consensus 495 a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 495 GSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 777777666 66888888761 1 6788999999988888876665433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=199.01 Aligned_cols=336 Identities=14% Similarity=0.054 Sum_probs=220.5
Q ss_pred hhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh----cCChH-HHHHHHHHHHHHHHHHHHHhhc----ChHH
Q 010343 126 AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKA-VLGFGVVWWSIATALTPVAAKL----GLPF 196 (512)
Q Consensus 126 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~~~----~~~~ 196 (512)
..+.+.+++|+++.++|.+.++..+...+..|+.|.++|| +|||| .++.+.+..+++..+....+.. ..+.
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3555888899999999999999999999999999999998 77754 4556777777776655555421 1355
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHhccc-CCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-------ccCchhHHHHHHH
Q 010343 197 LLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWPSVFYSFGS 268 (512)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~~~f~~~~~ 268 (512)
+++..++.+.+......+..++.+|+. ++++|.+..++...+..+|..+++.+...+.. ..+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 666667777777778888889999988 55889999999988888888888765544433 2467878888877
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010343 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348 (512)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 348 (512)
+.++..+..+...+|+++++++.+ .....+++.+++||.++.+++..++............+.|.
T Consensus 192 i~~v~~~~~~~~~~e~~~~~~~~~---------------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 256 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTPEVDNS---------------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV 256 (444)
T ss_pred HHHHHHHHHhCCeEEecCCCCcCC---------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee
Confidence 777766655555444322111100 01123567789999998888777766666655555444444
Q ss_pred HHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHH
Q 010343 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC 428 (512)
Q Consensus 349 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (512)
+...+ +....+.+.....+..+++.++.+++.||+|+|+. ....................++.+...+..++
T Consensus 257 ~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 328 (444)
T PRK09669 257 NYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRA-------FKWTIVAFVILSALIFFIPPSNVWLIFALNIL 328 (444)
T ss_pred eeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44333 23344455556667888888999999999998842 22222111111111112222333333333333
Q ss_pred Hhhhhhhhhchhhhhhhhhc--------CcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcch
Q 010343 429 SQGTDAFSQSGLYSNHQDIA--------PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 484 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~ 484 (512)
.+...+...+....+..++. .+..|..+|..+.+..+|..+|+.+.|.+.+..||.
T Consensus 329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333344455555554442 234577889999999999999999999999987773
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-21 Score=190.78 Aligned_cols=360 Identities=16% Similarity=0.097 Sum_probs=265.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHH-HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHH
Q 010343 139 ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217 (512)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 217 (512)
+..++..++..+...+..|+.|.++|+.++||.++ +...+..++..++.+.+..+++...+..++.-++.+......++
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999999999999999998776655 44455556666666654335666666677777788888899999
Q ss_pred HHhcccCCcch--------------------------hHHHHHHHHhhhhHHHHHHhHHHHHhcc--------cCchhHH
Q 010343 218 ILSKWVPVAER--------------------------SRSLALVYSGMYLGSVTGLAFSPFLIHR--------FGWPSVF 263 (512)
Q Consensus 218 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~g~~~~f 263 (512)
++.+..+++++ ++..+.-...+.+|+++.-.+.-.+... .+.|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 9999999999999998887776555322 2358888
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCC-CCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHH
Q 010343 264 YSFGSLGTVWFTVWLSKAHSSPAED-PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 342 (512)
.+.++..++..+..++..|+.++.+ .+..........++ -...++++.++|.+..+++..+++.-+...+..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~-------l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~ 302 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKR-------LWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS 302 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHH-------HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777777777765522 11111110000000 023467778899999999999999999999999
Q ss_pred hhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHhHHHHHHHH-----hhcc
Q 010343 343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK--GLSVTTVRKIMQSIGFLGPAFFLT-----QLSH 415 (512)
Q Consensus 343 ~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 415 (512)
+...|..+.+|++..+...+..+..+.+++|++++|++.||+|.| +..... +....+.....++ ....
T Consensus 303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~-----l~~~~~i~~~g~~G~~~~~~g~ 377 (477)
T PF11700_consen 303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLIS-----LILWIIIPLYGLFGFWPSFFGL 377 (477)
T ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH-----HHHHHHHHHHHHHHhhhcccCc
Confidence 999999999999999999999999999999999999999999998 322111 1111111111111 1113
Q ss_pred CChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc-chhHHHHHHHHH
Q 010343 416 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLY 494 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g-~~~~~~~~~~~~ 494 (512)
.+.+...+..++.+...+......-..+.+..|+++.+..+|++.......+.+||++.|.+.+..| .+..+....++.
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf 457 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF 457 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3444445555556666666666666666677778899999999999999999999999999999865 889999999999
Q ss_pred HHHHHHHHHhcCCccc
Q 010343 495 LVGTAVWNLFSTGEKV 510 (512)
Q Consensus 495 ~~~~~~~~~~~~~~~~ 510 (512)
+++.++......++.+
T Consensus 458 ~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 458 LIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHhhccchhhh
Confidence 9998887666555443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=185.33 Aligned_cols=386 Identities=16% Similarity=0.143 Sum_probs=254.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh-cCChHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWW 179 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 179 (512)
+|...++..++..|-+++...........+..+.+++.++..++.++|.....+..+++|++.|| +|.|..-++-....
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 44445555555556666666666666677888889999999999999999999999999999997 67666555444444
Q ss_pred HHHHHHHH---HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 180 SIATALTP---VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 180 ~~~~~~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
.++.++++ ..+ .+|.+..+|++.|+|.-....+-+.+...|+..+|.+.++|+......+|..+--.+.+++.+.
T Consensus 121 ~~GqliFa~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 121 FLGQLIFAAGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred HHHHHHHHhchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence 55555543 344 7899999999999998888899999999999999999999999999999999888888888775
Q ss_pred cCc------hhH---HHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHH
Q 010343 257 FGW------PSV---FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALI 327 (512)
Q Consensus 257 ~g~------~~~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
.+- +.. ....+...+...+......--..+ ..++....++....+..+..+.+ --.|.+|.+.
T Consensus 199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~------rAerilh~e~g~~Ge~pkLtdv~--~f~ppfw~~~ 270 (459)
T KOG4686|consen 199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDD------RAERILHLEEGFLGEEPKLTDVN--TFYPPFWVLV 270 (459)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------HHHHHHhhhcCcccCCccccccc--ccCccHHHHH
Confidence 431 111 111111111111111111100000 00000000000000111111111 1368899999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHH
Q 010343 328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA 407 (512)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 407 (512)
+..++++.+...+...-|.++++++|+++..++.+.+.....+.+.+++.|.++||+|++-. ++... ++...
T Consensus 271 iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-------wv~~a-~~~tl 342 (459)
T KOG4686|consen 271 IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-------WVASA-CILTL 342 (459)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-------hHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998832 22222 22211
Q ss_pred H--HHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc-ch
Q 010343 408 F--FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WD 484 (512)
Q Consensus 408 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g-~~ 484 (512)
. ..+.+... +++... .+++.......-.........+++++.|++.|..+.+.++|-++.|.+.|.+.|+-| |.
T Consensus 343 ~~H~~l~Ft~l-sPy~~m--~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~ 419 (459)
T KOG4686|consen 343 LGHSGLFFTFL-SPYTSM--TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD 419 (459)
T ss_pred HHhhhHHhhhc-cHHHHH--HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence 1 12222222 222222 222333332222223333344566789999999999999999999999999999844 43
Q ss_pred h---HHHHHHHHHHHHHHHHHHhcCC
Q 010343 485 D---VFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 485 ~---~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
. -|+..+.+.+....+.+...++
T Consensus 420 ~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 420 NLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecc
Confidence 3 3444455555555555555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=198.72 Aligned_cols=377 Identities=10% Similarity=-0.001 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh-hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcC-----ChHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLGFGVV 177 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~ 177 (512)
..+.++...++..++. ...... .+.+.+++|++.++++...++..++..+-.+ +|+++||++ ||+.++++.+
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL 103 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence 3455666677888888 555444 5556778999999999999999999988555 999999997 6666777766
Q ss_pred HHH-HHHHHHHHHhhcCh-HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHH---HHHHHHhhhhHHHHHHhHHHH
Q 010343 178 WWS-IATALTPVAAKLGL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS---LALVYSGMYLGSVTGLAFSPF 252 (512)
Q Consensus 178 ~~~-~~~~~~~~~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~g~~~g~~~~~~ 252 (512)
+.. +....++..+ +. ....+..++.+++.+...++..++..|..+ +++... .+.......+|.++|+.++|.
T Consensus 104 l~~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~ 180 (468)
T TIGR00788 104 LGSAILYGLLPGKV--SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGP 180 (468)
T ss_pred HHHHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHH
Confidence 653 4433333333 43 344458899999999999999999999997 554443 333344455899999999999
Q ss_pred HhcccCchhHHHHHHHHHHHHHHHHhhhccCCCC-CCCCCChhhh---HhhhhccccCCCCCCchHHHhhcChHHHHHHH
Q 010343 253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA-EDPQLRPAEK---KLIVSSCASKEPVKTIPWGLILSKPPVWALIV 328 (512)
Q Consensus 253 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (512)
+.+.++|+..|++.+++.++..+...+ .+|++. ..++..+.+. ........+.......+.+..+++|.++...+
T Consensus 181 l~~~~~~~~~f~~~a~l~ll~~~~~~~-~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~ 259 (468)
T TIGR00788 181 LLDKTLTRILFLITAALLLLQLFVSNL-SKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLI 259 (468)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHh-cccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 999999999999988888777444444 344321 1111000000 00000000000000123455678888887666
Q ss_pred HHHH-HHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHH
Q 010343 329 SHFC-HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA 407 (512)
Q Consensus 329 ~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 407 (512)
..++ +.........+. .+..+.+|+++.+.|.+....+++.+++..+.+++.+|++.|+ ++..+.+..+
T Consensus 260 fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~---------~l~~~~~l~~ 329 (468)
T TIGR00788 260 FIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL---------LFGVTTLLYT 329 (468)
T ss_pred HHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHHHH
Confidence 6555 322222211111 1223458999999999999999999999999999998888772 3333333333
Q ss_pred HHHHhhc----c------CChh-HHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhh
Q 010343 408 FFLTQLS----H------VDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGY 476 (512)
Q Consensus 408 ~~~~~~~----~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~ 476 (512)
....... . .+.. .......+...+.+....+......+..+++++|+.+|+.+.+.++|..+++.++|.
T Consensus 330 ~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 330 LSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred HHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221110 0 0112 222223333444444455555556666777899999999999999999999999999
Q ss_pred eeecCc-----chhHHHHHHHHHHH
Q 010343 477 ILQHGS-----WDDVFKVSVGLYLV 496 (512)
Q Consensus 477 l~~~~g-----~~~~~~~~~~~~~~ 496 (512)
+.++.| ++..+....+..+.
T Consensus 410 l~~~~g~~~~~~~~~~~~i~i~~~~ 434 (468)
T TIGR00788 410 LMETIGITCDNSNNLWLLILGHSLA 434 (468)
T ss_pred HHHHcCCCcccccchHHHHHHHHHH
Confidence 999887 76666554444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-20 Score=181.62 Aligned_cols=394 Identities=14% Similarity=0.153 Sum_probs=237.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-CChHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWW 179 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 179 (512)
+++.+..++...+...+..+.+...+|.+ .+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||.+.++.++.
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 34445566666666676777676676664 567899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCc--chhHHHHHHHHhhhhHHHHHHhHHHHHhccc
Q 010343 180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF 257 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 257 (512)
+++.+++..... +...+++...+.+++.+...+...++++|.+|++ +|..++++.....++|..++|.+.+++.+.+
T Consensus 87 ~lg~lll~~~~~-~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~ 165 (493)
T PRK15462 87 AIGHVVLGASEI-HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY 165 (493)
T ss_pred HHHHHHHHHhhc-chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 988876665431 2233444445555666777788889999999875 6899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccCCCC----CCCCCChhhhHh---------------hhhc-cccCCCC--------
Q 010343 258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPA----EDPQLRPAEKKL---------------IVSS-CASKEPV-------- 309 (512)
Q Consensus 258 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------~~~~-~~~~~~~-------- 309 (512)
||++.|.+.++..++..+..+...+..++ +++..++++... .... ..++...
T Consensus 166 Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (493)
T PRK15462 166 SWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATI 245 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998766444443333322211111 011111100000 0000 0000000
Q ss_pred ---------CCchHHHhhcChHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCC----ccchhhhhhhhHHHHHHH
Q 010343 310 ---------KTIPWGLILSKPPV---WALIVSHFCHNWGTFILLTWMPTYYNQVLHFN----LTESGLFCVLPWLTMAFS 373 (512)
Q Consensus 310 ---------~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~----~~~~g~~~~~~~~~~~~~ 373 (512)
...+.... .++++ ..+.+...+....+....+.+..|.++.-+.+ .-..+++.+++.+..++.
T Consensus 246 ~~~~~~~~~~~~~~~~~-er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l 324 (493)
T PRK15462 246 IGLGVLAKIYRKAENQK-QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLC 324 (493)
T ss_pred HHHHHHHHHHHhcCCHH-HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHH
Confidence 00000000 01122 23333333444444455556666666532211 123567888888888888
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh-----cc--CChhHHHHHHHHHHhhhhhhhhchhhhhhhh
Q 010343 374 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL-----SH--VDSPAMAVLCMACSQGTDAFSQSGLYSNHQD 446 (512)
Q Consensus 374 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
+++.+++-.|..+++.-.....+..+.+.+...+...+.. .. ..+.++.+...++......+..|...+...+
T Consensus 325 ~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~ 404 (493)
T PRK15462 325 GVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITR 404 (493)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 8888888777643211111112233333333322222211 11 1234445555555555566666777776666
Q ss_pred hcC-cchhhHHHHHHHHH-hHHHHHHHHhhhheeec------------CcchhHHHHHHHHHHHH
Q 010343 447 IAP-RYSGVLLGLSNTAG-VLAGVFGTAATGYILQH------------GSWDDVFKVSVGLYLVG 497 (512)
Q Consensus 447 ~~~-~~~g~~~g~~~~~~-~~g~~ig~~l~g~l~~~------------~g~~~~~~~~~~~~~~~ 497 (512)
..| +.+|+.+|...... .+|..++..+.+...+. ..|...|...+...++.
T Consensus 405 laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 405 IEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 666 67999999986643 57777776666655321 13556677666555444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-21 Score=180.88 Aligned_cols=278 Identities=11% Similarity=0.059 Sum_probs=196.5
Q ss_pred ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc----------------
Q 010343 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR---------------- 256 (512)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------- 256 (512)
+++.+++..++.|.|.+...+..+.++++..++|++.+.+++.+.++++|.+++|.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 7899999999999999999999999999999999999999999999999999999999988732
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHH
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG 336 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (512)
..|+++|++.+.+.++..+++.+...++.+++ + .+...+ ++ ....+..+++|.++...+..+++...
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~-~-~~~~~~--------~~---~~~~~~~~~~~~~~l~~~~~f~yvg~ 155 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEA-D-VARVSS--------GD---TTQKTSAFQFTHLVLGALGIFVYVGA 155 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc-c-cccccc--------cc---ccchhhHHhhHHHHHHHHHHHHHHHH
Confidence 36899999777665555544443322111111 1 000000 00 01123467788888888888888888
Q ss_pred HHHHHHhhHHHHHHh--hcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc
Q 010343 337 TFILLTWMPTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 414 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (512)
+.+...|.+.|+.+. +|+++.+.+...+.+..+.++|+++.+++.||+++++. .. .+..+.........
T Consensus 156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-------l~--~~~~l~~~~~~l~~ 226 (310)
T TIGR01272 156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-------LA--FNAFLAVLLSIGAA 226 (310)
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-------HH--HHHHHHHHHHHHHH
Confidence 999999999999864 68999999999999999999999999999999998742 11 11111111111111
Q ss_pred cCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHH
Q 010343 415 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 494 (512)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 494 (512)
..+.........+++.+.+ ...+.......+..+++.+++.++. ....+|+.++|.+.|.+.|..|.+..+++...+.
T Consensus 227 ~~~~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 227 LTHGYVAMWFVLALGLFNS-IMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1222222333334444444 4445545544444455567777775 5778999999999999999999888887544443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=193.37 Aligned_cols=338 Identities=17% Similarity=0.210 Sum_probs=246.5
Q ss_pred hhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHh----hcCChHH-HHHHHHHHHHHHHHHHHH-h-hc----C
Q 010343 125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAV-LGFGVVWWSIATALTPVA-A-KL----G 193 (512)
Q Consensus 125 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~-~~~~~~~~~~~~~~~~~~-~-~~----~ 193 (512)
...+.+.+.+|+++..+|++..+..+..++..|+.|.++| |+||||. ++++.+..+++..++... + +. .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 3456678888999999999999999999999999999999 7997766 557778888888777755 2 11 1
Q ss_pred hHHHHHHHHHHhhhhhchhhHHHHHHhcccC-CcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc-------CchhHHHH
Q 010343 194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYS 265 (512)
Q Consensus 194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~f~~ 265 (512)
...+.+..++..++......+..++..|..+ +++|.+..+..+.+..+|..+...+.+.+.+.. +|++...+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 2345777777899999999999999999997 578999999999999999877777766665432 58888888
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhH
Q 010343 266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 345 (512)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 345 (512)
.+++.++..++..+..+|++++.++.++ +......++.+++||.++.+.+..++............+
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~ 249 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSVEVTEQEK-------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP 249 (428)
T ss_pred HHHHHHHHhhhhhheeeecccccccccc-------------ccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence 8888888877777776662111111111 111234578899999999999999998888888888889
Q ss_pred HHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHH
Q 010343 346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC 425 (512)
Q Consensus 346 ~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
.|.++..|.+ ...+.+.....++.+++.++.+++.||+|+|+.... ...+...+.........++.+...+.
T Consensus 250 y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~ 321 (428)
T PF13347_consen 250 YYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII-------GLLLAALGFLLLFFLGPGSPWLVLIL 321 (428)
T ss_pred HHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh-------hHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9988887776 567788888899999999999999999999965332 22222222222222221344444444
Q ss_pred -HHHHhhhhhhhhchhhhhhhhhc--------CcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcch
Q 010343 426 -MACSQGTDAFSQSGLYSNHQDIA--------PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 484 (512)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~ 484 (512)
.+.+.+.+. .......+..++. .++.|..+|+.+....++..+++.+.|.+.+..||.
T Consensus 322 ~~l~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 322 FILAGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHhHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 444444433 3344444443332 245799999999999999999999999998776554
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-21 Score=177.55 Aligned_cols=395 Identities=15% Similarity=0.118 Sum_probs=288.3
Q ss_pred CccCCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHH
Q 010343 95 WWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174 (512)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 174 (512)
..+..++||.+++...+..+.+.+.+..+.+......+.+| +...+-|..-+|.+.+....+++-|+.||+|-|..+.+
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 34556789999999999999988888888888777777888 88888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----ChH--HHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHh
Q 010343 175 GVVWWSIATALTPVAAKL----GLP--FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA 248 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~----~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 248 (512)
+..+.+++..+-..+... .++ ....+..+.+.+..........+..-|+++++|..+..+-.+++.+|.++|.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 999999998876655421 334 67788888888888777777788899999999999999999999999999988
Q ss_pred HHHHHhccc------Cchh--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcC
Q 010343 249 FSPFLIHRF------GWPS--VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK 320 (512)
Q Consensus 249 ~~~~l~~~~------g~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
+...+..+- .|.. .|+..+++..+.+++..+..+++|+........... +.....+.++.++|
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n 265 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKN 265 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcC
Confidence 888887643 3443 355455555555555555555544333322221111 11124567889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 400 (512)
+++..+.+.+.+....+++..+.+-.-+.. .|.+....|+......+++++++.+.|.+.||.+.-+. ....
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~-------~~~v 337 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL-------TTLV 337 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH-------HHHH
Confidence 999999888888888888877777766655 47888899999999999999999999999999876632 1111
Q ss_pred HHhHHHH--HHH--HhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhh
Q 010343 401 IGFLGPA--FFL--TQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGY 476 (512)
Q Consensus 401 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~ 476 (512)
....... ..+ .........+....+..++.+..+..+...-.-.+...|..-++..|+.+...++-+.+-.++.+.
T Consensus 338 ~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~ 417 (480)
T KOG2563|consen 338 LYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI 417 (480)
T ss_pred HHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence 1111111 111 112222334445555555555555555444445567788888899999999999999999999999
Q ss_pred eeecCc----chhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 477 ILQHGS----WDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 477 l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
..+..+ +...-+.....+++.+++..+++.+
T Consensus 418 ~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 418 LAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred HhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 988866 5555566666666666666665544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=186.77 Aligned_cols=348 Identities=14% Similarity=0.075 Sum_probs=209.6
Q ss_pred HHHHHhhhhhhhhhh-hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc----CChHHH-HHHHHHHHHHHHH
Q 010343 112 AFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV----GGKAVL-GFGVVWWSIATAL 185 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~~~~~ 185 (512)
+.+..........++ .+++.+.+|+++.++|.+.++..+..++..++.|+++||. ||||.+ ..+.+...+...+
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 343444444444444 4457777899999999999999999999999999999996 666654 5555544444433
Q ss_pred HHHHh-h----cChHHHHHHHHHHhhhhhchhhHHHHHHhcccC-CcchhHHHHHHHHhhh-----hHHHHHHhHHHHHh
Q 010343 186 TPVAA-K----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMY-----LGSVTGLAFSPFLI 254 (512)
Q Consensus 186 ~~~~~-~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~-----~g~~~g~~~~~~l~ 254 (512)
....+ . ...+..++..++.+++.+...++..++..+... +++|.+..++...+.+ ++..++|.+.+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g 175 (448)
T PRK09848 96 VFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP 175 (448)
T ss_pred HHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 32111 0 012334555677788888888888887776664 4678887776655434 44445555554321
Q ss_pred ccc--CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHH
Q 010343 255 HRF--GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC 332 (512)
Q Consensus 255 ~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (512)
+.. +|.....+.+++.++..++.....+|+++++.+. +.....++.+++||.++...+..++
T Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----------------~~~~~~~~~l~~n~~f~~~~~~~~~ 239 (448)
T PRK09848 176 EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----------------PSLKISLQTLKRNRPLFMLCIGALC 239 (448)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----------------CCHHHHHHHHhCCchHHHHHHHHHH
Confidence 111 1111112222333333223333233322111110 0112246778999999998888888
Q ss_pred HHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHh
Q 010343 333 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ 412 (512)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (512)
............|.|+++.+|.+....++......++.+++.++.+++.||+++|+. ......+...+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~-------~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 240 VLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT-------FLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHH
Confidence 888888888888888888888776655555555567788899999999999998843 2222222222222222
Q ss_pred hccCChhHHHHH-HHHHHhhhhhhhhchhhhhhhhhcC--------cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcc
Q 010343 413 LSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 483 (512)
Q Consensus 413 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~ 483 (512)
....+..+.... ..+.+.+.+ ...+.......+..+ ++.|...|+.+....+|..+++.+.|.+.+..||
T Consensus 313 ~~~~~~~~~~~~~~~l~g~G~~-~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 313 WVSVWSLPVALVALAIASIGQG-VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222223333332 233333333 333334444333322 3469999999999999999999999998877665
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=190.53 Aligned_cols=356 Identities=14% Similarity=0.043 Sum_probs=235.5
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhc
Q 010343 131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV 210 (512)
Q Consensus 131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 210 (512)
.+....+.....+..+++.+|..++.+++|.++||+|||++++++.++..++.++.++++ |++.+++.|++.|++.+.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccc
Confidence 456677889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 010343 211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 290 (512)
Q Consensus 211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (512)
.......++.|++++++|+.+..+ ......++.+++..++++.. +||+.+++..+..++..++ +++.+|.++....
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~ 263 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS 263 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence 999999999999999999999999 88888888889988888887 8999999998888877666 4555555542111
Q ss_pred CCh-hhhHhhhhc---------------------c--ccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 291 LRP-AEKKLIVSS---------------------C--ASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 291 ~~~-~~~~~~~~~---------------------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
..+ ++.....++ . +.....+...+..+++.|++....+...+..+.......-++.
T Consensus 264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~ 343 (521)
T KOG0255|consen 264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL 343 (521)
T ss_pred cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 111 110000000 0 0001112234667777776555544444444333333333333
Q ss_pred HHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH--hhccCChh-HHHH
Q 010343 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVDSP-AMAV 423 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 423 (512)
.... +|.+. .......+.....+....+...|+.||| .....+.....+.++ ........ +...
T Consensus 344 ~~~~-lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (521)
T KOG0255|consen 344 NVSG-LGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHW 410 (521)
T ss_pred hhhh-cCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 3322 34333 3444455557777778888999999887 222222222222222 22222222 2333
Q ss_pred HHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHH
Q 010343 424 LCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 502 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (512)
....++.+..............+..| ..|..+.+.......++.+++|.+.-..... .....+...+.+..+...+..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 489 (521)
T KOG0255|consen 411 ILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM-FPLLGLILFGWLALLLGLLSL 489 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHH
Confidence 34444444444444444566666666 5799999999999999999999988655442 222222223444444444443
Q ss_pred HhcC
Q 010343 503 LFST 506 (512)
Q Consensus 503 ~~~~ 506 (512)
.+.+
T Consensus 490 ~~lp 493 (521)
T KOG0255|consen 490 LLLP 493 (521)
T ss_pred hcCc
Confidence 4433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=189.06 Aligned_cols=397 Identities=16% Similarity=0.166 Sum_probs=264.2
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccc-C-------CChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCCh
Q 010343 98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF-N-------WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169 (512)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 169 (512)
..+++.+.+.+..++.|.+.++...++...+.+...+ | .++...+.+..+..++.+++|++.|++.||+|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3456677778888889999999999988887765543 1 4566788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHH
Q 010343 170 AVLGFGVVWWSIATALTPVAAKL-----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV 244 (512)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 244 (512)
+++...++++.++.+++++.... -.+++...|++.|+|.|+-+|...++.+|...++.||...+...+..+.|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 99999999999999877765421 1367888999999999999999999999999999999999999888888888
Q ss_pred HHHhHHHHHhcc---------------cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCC-CCCh-------hhhHhhh-
Q 010343 245 TGLAFSPFLIHR---------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP-QLRP-------AEKKLIV- 300 (512)
Q Consensus 245 ~g~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~- 300 (512)
.|.+++-.+... .=||..|.+..+..++... .....||+++-+. ..++ .++....
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~ 273 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYTALVSKKLKQAAGDMKKVLSVD 273 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHHHHhhcCHhhhhhccccccccc
Confidence 887776655421 1188888776655554432 3333344332110 0000 0000000
Q ss_pred ---hcccc-CCCCCC--ch-HHHhhc---ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhh--------h
Q 010343 301 ---SSCAS-KEPVKT--IP-WGLILS---KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL--------F 362 (512)
Q Consensus 301 ---~~~~~-~~~~~~--~~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~--------~ 362 (512)
++..+ ..+... .. +...+. -+.+...+...|+.-.+++....+....++. .|+.+..... .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~ 352 (538)
T KOG0252|consen 274 IEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEG 352 (538)
T ss_pred cchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHH
Confidence 00000 000011 11 222222 2445556667777778888888888888876 5776655444 1
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCCh----hHHHHHHHHHHhhhhhhhh
Q 010343 363 CVLPW-LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDS----PAMAVLCMACSQGTDAFSQ 437 (512)
Q Consensus 363 ~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 437 (512)
..+.. .+.+.|..+...++|++||+ .+...++.+..+..+......+ .....++..+..++..+.+
T Consensus 353 ~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 353 NLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred HHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC
Confidence 11111 22233555566789999998 4444444444444433332222 1112222222222232322
Q ss_pred c-hhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheee-----cCcchhHHHHHHHHHHHHHHHHHHhc
Q 010343 438 S-GLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ-----HGSWDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 438 ~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
. ....+..+..| +.|++..|+...++..|++++....+++.+ ..|.+.++++.+++++++.+..+++.
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 2 22334455666 789999999999999999999999999999 68999999999999999988776665
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-20 Score=185.19 Aligned_cols=354 Identities=12% Similarity=0.015 Sum_probs=226.8
Q ss_pred HHHHHhhhhhhhhhh-hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHh----hcCC-hHHHHHHHHHHHHHHHH
Q 010343 112 AFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGG-KAVLGFGVVWWSIATAL 185 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~~~ 185 (512)
+.+...+.......+ ..++.+.+|+++.++|.+..+..+.-++..|+.|.++| |+|| |+.++++.+..+++..+
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l 93 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL 93 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence 333344444555554 44466778999999999999999999999999999999 5698 55566777777777666
Q ss_pred HHHHhhc--C--hHHHHHHHHHHhhhhhchhhHHHHHHhccc-CCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc----
Q 010343 186 TPVAAKL--G--LPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR---- 256 (512)
Q Consensus 186 ~~~~~~~--~--~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---- 256 (512)
+...++. + +..+++..++.+++......+..++..|.. +++||.+..++...+.++|..+++.+...+.+.
T Consensus 94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~ 173 (473)
T PRK10429 94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG 173 (473)
T ss_pred HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6443311 1 334556667778888888999999999998 689999999998888888877766555443222
Q ss_pred ---cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHH
Q 010343 257 ---FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333 (512)
Q Consensus 257 ---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (512)
.+|+....+.+++.++..+..++..+|.+.+.....+.+ ++......++.+++||.++.+++..++.
T Consensus 174 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~n~~~~~ll~~~~~~ 243 (473)
T PRK10429 174 DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEG----------SHLTLKDIVALIYKNDQLSCLLGMALAY 243 (473)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccc----------cCCCHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 245666666666666555555554444321111000000 0011123456677999998888888888
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHH-HHHHHHh
Q 010343 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG-PAFFLTQ 412 (512)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 412 (512)
.........+.+.|.+...+ +....+.+.....++.+++.++.+++.||+|+|+.. .....+.. .......
T Consensus 244 ~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~-------~~~~~~~~~~~~~~~~ 315 (473)
T PRK10429 244 NIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW-------AGASIFPVLSCGVLLL 315 (473)
T ss_pred HHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-------HHHHHHHHHHHHHHHH
Confidence 77777777777766655433 555667777777789999999999999999988432 21221111 1111111
Q ss_pred --hccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhc--------CcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 413 --LSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA--------PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 413 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
....+..+..++...+.+...+........+..+.. .+..|..+|....+..++..+++.+.|++.+..|
T Consensus 316 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 316 MGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112233333333322222222233333334443332 2345779999999999999999999999988766
Q ss_pred c
Q 010343 483 W 483 (512)
Q Consensus 483 ~ 483 (512)
|
T Consensus 396 y 396 (473)
T PRK10429 396 Y 396 (473)
T ss_pred C
Confidence 6
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-18 Score=172.80 Aligned_cols=342 Identities=12% Similarity=0.041 Sum_probs=220.3
Q ss_pred hhhhhhhhhh-hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh----cCChHH-HHHHHHHHHHHHHHHHHHh
Q 010343 117 NMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAV-LGFGVVWWSIATALTPVAA 190 (512)
Q Consensus 117 ~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~~~~~~~ 190 (512)
.......... ...+.+..|+++..+|.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++.+++...+
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p 101 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP 101 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence 3333444433 455778899999999999999999999999999999996 687665 5567677777776665554
Q ss_pred hcC----hHHHHHHHHHHhhhhhchhhHHHHHHhcccC-CcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc-------C
Q 010343 191 KLG----LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------G 258 (512)
Q Consensus 191 ~~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g 258 (512)
..+ ...+++..++..++......+..++.++..+ ++||.+..++...+..+|..+++.+...+.+.. +
T Consensus 102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g 181 (460)
T PRK11462 102 DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG 181 (460)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 211 3456667777888888888999999999886 789999999999999999888877765555433 4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHH
Q 010343 259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF 338 (512)
Q Consensus 259 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (512)
|+....+.+++.+++..+.+...+|.++++++ +.. .+..++..++||.++.++...++......
T Consensus 182 ~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~-~~~---------------~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~ 245 (460)
T PRK11462 182 FQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT-TTS---------------MREDLRDIWQNDQWRIVGLLTIFNILAVC 245 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeccCCCcc-CCC---------------HHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 67766777766666655555544443222111 000 02246678899998877766666655555
Q ss_pred HHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhH-HHHHHHHhhccCC
Q 010343 339 ILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL-GPAFFLTQLSHVD 417 (512)
Q Consensus 339 ~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 417 (512)
........|.+...|. ....+.+.....++.+++.++++++.||+++|+. ........ .....+......+
T Consensus 246 ~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~-------~~~~~~~~~~~~~~~~~~~~~~ 317 (460)
T PRK11462 246 VRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI-------FWWTNALLAVISLAMFFVPMQA 317 (460)
T ss_pred HHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHHHhchhH
Confidence 5555555555544443 3344566777888899999999999999988732 22111111 1111111222111
Q ss_pred hhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC--------cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcc
Q 010343 418 SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 483 (512)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~ 483 (512)
........++.+.+. ....+....+..+..+ +..|..++.......+|..+++.+.|.+.+..||
T Consensus 318 ~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 318 SITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 212222222233222 3333333344443332 2346667887889999999999999998877665
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=167.23 Aligned_cols=355 Identities=17% Similarity=0.077 Sum_probs=264.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHH-HHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhhhhchhhH
Q 010343 137 NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-LGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPA 214 (512)
Q Consensus 137 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~ 214 (512)
+.+..|...++..+...+..|+.|.++|+.|+||. +-....+..+..+++.+.++ ..++..++...+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 34567888899999999999999999999996655 44555666666777777774 34566677788888998889999
Q ss_pred HHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHH--Hh----------------cccCchhHHHHHHHHHHHHHHH
Q 010343 215 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF--LI----------------HRFGWPSVFYSFGSLGTVWFTV 276 (512)
Q Consensus 215 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~--l~----------------~~~g~~~~f~~~~~~~~~~~~~ 276 (512)
.++++.+..++++.++..++-...+.+|+.+.-.+.-. +. +...-|..+.+.++-.++..+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999999999888888888887776554311 11 1223577888888888887777
Q ss_pred HhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCc
Q 010343 277 WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNL 356 (512)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 356 (512)
.+...++.++......+.-.+..+ +-...++++.+++.+..+++..+++.-+......+...|....+|++.
T Consensus 216 m~~~v~~~~~~~~~~~~~l~~g~k--------~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~ 287 (438)
T COG2270 216 MILNVHDAEKISSPPPTALRNGFK--------ELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSS 287 (438)
T ss_pred HHhcccccccccccchHHHHHHHH--------HHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccH
Confidence 777766655432111111100000 002357788899999999999999999999999999999998899999
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhh
Q 010343 357 TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFS 436 (512)
Q Consensus 357 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
.+..++.....+.+++|+++.|++.||+|.|++... .+..... .++...............++++.+.+...
T Consensus 288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~-------~lvi~~~-~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI-------GLVILSI-AALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH-------HHHHHHH-HHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 999999999999999999999999999999965332 2222222 22222222334444455566677777777
Q ss_pred hchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec-CcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 437 QSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 437 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
...-..+.+.+|+++.++.+|+++......+.+||++.+.+.+. ...+..+....++.+++.++.+..+.+
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 77777788888999999999999999999999999999999987 456777777777777777766555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=161.13 Aligned_cols=361 Identities=15% Similarity=0.133 Sum_probs=253.9
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcC-----ChHHHH-HHHHHHHHHHHHHHHHh----h-------c
Q 010343 130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLG-FGVVWWSIATALTPVAA----K-------L 192 (512)
Q Consensus 130 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~-~~~~~~~~~~~~~~~~~----~-------~ 192 (512)
+..|++++....+.+.++..+... ..+.+|..+|+.+ ||..++ .|.++...+..+.+++. . .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 567899999999999998877654 6999999999998 777655 45555555554444321 1 0
Q ss_pred Ch---HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH---
Q 010343 193 GL---PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF--- 266 (512)
Q Consensus 193 ~~---~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~--- 266 (512)
.+ ....+...+.|+|.+....+..+++.|..|+|+|+++.++...+.-+|.+++..+.+.+.+.++..-..-+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 11 234556788899999999999999999999999999999999999999999999999999877643333222
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
+++.++..++..+-. |++..+....+ +++++.....++++..+|+...+.+..++...+++.-...+-+
T Consensus 165 a~i~~~l~~ia~wg~-E~r~~~~~~~~----------~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP 233 (403)
T PF03209_consen 165 ALIALLLNLIALWGQ-EPRRSRRAAAA----------ERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEP 233 (403)
T ss_pred HHHHHHHHHHHHHhc-ccCCcccccCC----------CCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence 222222222222222 21111111000 1112222346778889999999999999999999999999999
Q ss_pred HHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHH
Q 010343 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC 425 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
|-.+.+|++..+...+....+.+.+++....|++..| .++++.. ..-+..+..........-...+.+......
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a-----~~G~~~~~~~f~lii~a~~~~~~~~~~~~~ 308 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTA-----ALGCLLGALAFALIILAGPLGSPWLFRPGV 308 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH-----HHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999988774 4443211 111111111111222222233344455556
Q ss_pred HHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec----------CcchhHHHHHHHHHH
Q 010343 426 MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH----------GSWDDVFKVSVGLYL 495 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~----------~g~~~~~~~~~~~~~ 495 (512)
+++|.+.+.+........+....+++.|..+|.....+.++..++..++|.+.|. .+|..+|.+-+++.+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~ 388 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL 388 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 6667777777666677777777788999999999999999999999999998874 357778888777777
Q ss_pred HHHHHHHHhcCC
Q 010343 496 VGTAVWNLFSTG 507 (512)
Q Consensus 496 ~~~~~~~~~~~~ 507 (512)
++..+.....++
T Consensus 389 ~a~~ll~~l~~~ 400 (403)
T PF03209_consen 389 AALVLLGRLDRR 400 (403)
T ss_pred HHHHHHHHhhhh
Confidence 777665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=167.55 Aligned_cols=355 Identities=15% Similarity=0.112 Sum_probs=258.7
Q ss_pred HHHHHhhhhhhhhhh-hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh----cCChH-HHHHHHHHHHHHHHH
Q 010343 112 AFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKA-VLGFGVVWWSIATAL 185 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~ 185 (512)
.-+............ +-.+.+..|+++..+|.+..+.-+--++.-|+.|.+.|| +||+| .++.+.+..++...+
T Consensus 20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHH
Confidence 333343444444444 444788899999999999999999999999999999996 67655 466777888888888
Q ss_pred HHHHhh----cChHHHHHHHHHHhhhhhchhhHHHHHHhcccC-CcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-----
Q 010343 186 TPVAAK----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIH----- 255 (512)
Q Consensus 186 ~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----- 255 (512)
+..+++ .+....++...+.+++......+..++.++..+ ++||.+..++.+.+..+|..+...+.+.+..
T Consensus 100 ~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~ 179 (467)
T COG2211 100 LFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG 179 (467)
T ss_pred HHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 877763 245667788899999999999999999998884 6899999999999999998777666665553
Q ss_pred --ccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHH
Q 010343 256 --RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333 (512)
Q Consensus 256 --~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (512)
..||+....+.+++..+..+.+++-.+|+..+....++..+. +.+..+..+++||.++..++..++.
T Consensus 180 ~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~-----------~~~~~~~~~~~Nrp~~~~l~~~l~~ 248 (467)
T COG2211 180 DKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKL-----------KLKDSFLLIFKNRPLLLLLLMNLLL 248 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccc-----------cHHHHHHHHHccchHHHHHHHHHHH
Confidence 346888888888888888877777766655433322210110 0122345688999999999988888
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL 413 (512)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (512)
..+.....+....|.+..+|.+.............+.+++.++..++.+|+|+|+.. .....+...+.....+
T Consensus 249 ~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-------~~~~~~~~i~~~~~~f 321 (467)
T COG2211 249 FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-------LIGLLLLAVGYLLLYF 321 (467)
T ss_pred HHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-------HHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888889899999999999999532 2222222222222222
Q ss_pred ccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC--------cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcch
Q 010343 414 SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 484 (512)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~ 484 (512)
...++.++.++..++.....+...+..+++..+..+ +..|...|.+..+.-+|.+++..+.|++.+..||.
T Consensus 322 ~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 322 TPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred hcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 233445555555455445555555555655544322 45688999999999999999999999998876653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-24 Score=218.70 Aligned_cols=392 Identities=17% Similarity=0.150 Sum_probs=246.4
Q ss_pred HHHHHhhhhhhhhhhhhhhh--cccCC---------ChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 112 AFLLCNMDRVNMSIAILPMS--AEFNW---------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~--~~~g~---------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
+.+..+++...+....+... .+++. +..+.++..+...++..++.+++|.++||+|||+.+.++.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~ 87 (451)
T PF00083_consen 8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI 87 (451)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 33556666665555544433 22222 22457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc--
Q 010343 181 IATALTPVAAKL-GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-- 257 (512)
Q Consensus 181 ~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-- 257 (512)
++.++..+++.. +++.+.++|++.|++.|...+....++.|..|+++|++..++.+....+|..++..++..+.+..
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 167 (451)
T PF00083_consen 88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDN 167 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999888733 67899999999999999999999999999999999999999999999999999888876554433
Q ss_pred -CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC---hhhhHh--------hhhccccCCC------CCCchHHHhhc
Q 010343 258 -GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR---PAEKKL--------IVSSCASKEP------VKTIPWGLILS 319 (512)
Q Consensus 258 -g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~------~~~~~~~~~~~ 319 (512)
+||..+.+..+..++..+.. .+.||+|+--..++ +.++.. ..++.++..+ +.+..++++++
T Consensus 168 ~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (451)
T PF00083_consen 168 WGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFR 246 (451)
T ss_pred ccccccccccccccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 49999998888877655544 45566554211110 000000 0000000000 01134566666
Q ss_pred ChH----HHHHHHHHHHHH-HHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhH
Q 010343 320 KPP----VWALIVSHFCHN-WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTV 394 (512)
Q Consensus 320 ~~~----~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 394 (512)
++. +........+.. .+......+.+.++++ .+.+.. -.......+...++.++...+.||+|||+....+.
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 247 NKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccccccc
Confidence 643 222222222221 2223344455555544 566665 22333445666677777789999999996544321
Q ss_pred HHHHHHHHhHHHHHHHHhhccCC----hhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHH
Q 010343 395 RKIMQSIGFLGPAFFLTQLSHVD----SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVF 469 (512)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~i 469 (512)
....+..+..+ ......... .........+..........+....+..|..| +.|+++.|+......+++.+
T Consensus 324 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i 400 (451)
T PF00083_consen 324 --LLMAICSLILG-IIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI 400 (451)
T ss_pred --ccccccccccc-cccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 11111111110 001111111 11222222222222332333444455555555 78999999999999999999
Q ss_pred HHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcCCccc
Q 010343 470 GTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 510 (512)
Q Consensus 470 g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (512)
++.+...+.+..+....+.+.++++++..++...+.++.|.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 401 IPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 99999999988775666666666666666666666665543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=158.39 Aligned_cols=404 Identities=15% Similarity=0.091 Sum_probs=252.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh-hhhhhcccC----CChhhHHHHHHHHHHHHHHHHhhhhHhHhh-cCChHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIA-ILPMSAEFN----WNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFG 175 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~ 175 (512)
+.+-+..++...+..-++.+.+... ..++..+++ ++++++.-+.+.|..-.-+..+++|+++|| +|+|+.+.++
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG 98 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG 98 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 3445666667777776666655444 444555666 999999999999988888999999999999 5999999999
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCc--chhHHHHHHHHhhhhHHHHHHhHHHHH
Q 010343 176 VVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFL 253 (512)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l 253 (512)
.+++.++.++++.....+...++++.++.++|.|..-+...+++.|.+|++ +|...++++.++.++|+.++|.+.+++
T Consensus 99 ail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~ 178 (498)
T COG3104 99 AILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL 178 (498)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence 999999999998873116778999999999999999999999999999765 367889999999999999999999999
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHhhhccCCCCCC-----CCCChhhhHhh---------hh---ccc------------
Q 010343 254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-----PQLRPAEKKLI---------VS---SCA------------ 304 (512)
Q Consensus 254 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---------~~---~~~------------ 304 (512)
.+++||+..|.+.++-..+.++..+..++...... ...+..+.... .. ...
T Consensus 179 ~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (498)
T COG3104 179 AINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVI 258 (498)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988777776665555443221111 00011000000 00 000
Q ss_pred ----------cCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCC----ccchhhhhhhhHHHH
Q 010343 305 ----------SKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFN----LTESGLFCVLPWLTM 370 (512)
Q Consensus 305 ----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~----~~~~g~~~~~~~~~~ 370 (512)
+....++.. .+-.|-.....+.+...++...+....+.+..|..+.-+.+ ....++..+...+.-
T Consensus 259 ~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~I 337 (498)
T COG3104 259 SILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFI 337 (498)
T ss_pred HHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHH
Confidence 000000000 01000011222233333333334444445555555432222 234578888999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc--------cCChhHHHHHHHHHHhhhhhhhhchhhh
Q 010343 371 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS--------HVDSPAMAVLCMACSQGTDAFSQSGLYS 442 (512)
Q Consensus 371 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (512)
++.+++..++..|.++++.......+..+...+...+.+.+... ...+.++.+...++......+..+.-..
T Consensus 338 ii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs 417 (498)
T COG3104 338 ILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLS 417 (498)
T ss_pred HHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999998886655322221122222222222222222211 1123344444444444444444455444
Q ss_pred hh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhh------eeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 443 NH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGY------ILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 443 ~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
.. ...|+...+.++|........|..++..+.+. ..+.......|..++...++..++.....+
T Consensus 418 ~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 418 MVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 44 44555678888888888777777777777663 233455667777777776666655444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=167.72 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
...+.++.+..+.+.+....+...+..+.+.++++..+.|++.+.+-++..+...+..++.-|..|-|++-+|.++++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 34556667777888888777777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-------------------h----------------------------c---ChHHHHHHHHHHhhhhhchh
Q 010343 183 TALTPVAA-------------------K----------------------------L---GLPFLLVVRVFMGIGEGVAM 212 (512)
Q Consensus 183 ~~~~~~~~-------------------~----------------------------~---~~~~l~~~~~l~G~~~~~~~ 212 (512)
.+++++.+ . . -+..++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 99886542 0 0 02367788999999999999
Q ss_pred hHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc------------------C-chhHHHHHHHHHHHH
Q 010343 213 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF------------------G-WPSVFYSFGSLGTVW 273 (512)
Q Consensus 213 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------------------g-~~~~f~~~~~~~~~~ 273 (512)
+...+++-|...+++-...+|+......+|.++|-++++++...+ | |..-|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886421 2 667788888888888
Q ss_pred HHHHhhhccCCCCCCCCCChhhhHhhhhccc--cCCC-------CCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhh
Q 010343 274 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCA--SKEP-------VKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 344 (512)
.+.+++++++.|+..++....+.+....+.. .+++ +.....+++++||.+....+...+....+.++.+|+
T Consensus 336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl 415 (735)
T KOG3626|consen 336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL 415 (735)
T ss_pred HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence 8888888777665443211111111111111 0111 112356788999999999999999999999999999
Q ss_pred HHHHHHhhcCCccchhhhhhhhHH-HHHHHHHHHHHHHHHHHhc
Q 010343 345 PTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSK 387 (512)
Q Consensus 345 ~~~l~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~ 387 (512)
|-|+++++|.+...+..+.+..++ +..+|.+++|++.+|+..+
T Consensus 416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence 999999999999999999877665 5567788899999988655
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=160.80 Aligned_cols=394 Identities=17% Similarity=0.179 Sum_probs=252.2
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc--cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCC-hHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGV 176 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~ 176 (512)
+.+|+.+++..+..++.....+.+.+..-++.++ .+.+.+..|++.++..++.+++.+..|++..|.+. |+.++++.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 4578889999999999999988888886666666 78889999999999999999999999999999986 88899999
Q ss_pred HHHHHHHHHH-HHH--hhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHH
Q 010343 177 VWWSIATALT-PVA--AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253 (512)
Q Consensus 177 ~~~~~~~~~~-~~~--~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 253 (512)
++..++.++. .+. ++..-+.++++|++.|+|.+ .....-+++++....++|.++++....+..+|.++||.+...+
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 9999999887 332 22245889999999999977 4567778888888889999999999999999999998888776
Q ss_pred hcc--cC-----------chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcC
Q 010343 254 IHR--FG-----------WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK 320 (512)
Q Consensus 254 ~~~--~g-----------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
... -| +..+-|+.+++.++..+......+|..++..+.+....+. ...+++..+... +..
T Consensus 189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~d~ 261 (488)
T KOG2325|consen 189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE---EKSDIEKVKKPK----LDW 261 (488)
T ss_pred hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh---hccchhhhccCC----hhH
Confidence 531 11 3456677777777777777777766655443222111100 000000000000 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhh----hHHHHHHHHHHHHHHH-HHHHhcCCchhhHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL----PWLTMAFSANLGGWIA-DTLVSKGLSVTTVR 395 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~----~~~~~~~~~~~~g~l~-dr~~~~~~~~~~~~ 395 (512)
+..+.+.+..+...+.+....+..+.+....++++..++-...+. .++..+...+...... .++..|+....+.
T Consensus 262 ~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~- 340 (488)
T KOG2325|consen 262 VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGF- 340 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehH-
Confidence 233444555555555566666667777777788877666544433 3333333333333222 1222232221110
Q ss_pred HHHHHHHhHHHHHHHHhhccCC---------------------------hhHHHHHH--HHHHhhhhhhhhchhhhhhhh
Q 010343 396 KIMQSIGFLGPAFFLTQLSHVD---------------------------SPAMAVLC--MACSQGTDAFSQSGLYSNHQD 446 (512)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 446 (512)
........+......... ..+.+... ++++...-.........+.+.
T Consensus 341 ----l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySki 416 (488)
T KOG2325|consen 341 ----LIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKI 416 (488)
T ss_pred ----HHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHH
Confidence 011111111000000000 00111111 112222222223344556677
Q ss_pred hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 447 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 447 ~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
..|++++++.|++......+..++|.+...+....|+++++.+..+..++...++..+.+
T Consensus 417 Lgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~ 476 (488)
T KOG2325|consen 417 LGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLK 476 (488)
T ss_pred hCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999988888777776666555433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-20 Score=183.68 Aligned_cols=371 Identities=15% Similarity=0.151 Sum_probs=3.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
+.+++..+++.+........+..+.++|+++..+.|++.+.+-++..+..++..++.+|..|-|++-+|.++++++.+++
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence 34444555556666667777889999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHh------------------------h------------------------cChHHHHHHHHHHhhhhhchhhHHHHH
Q 010343 187 PVAA------------------------K------------------------LGLPFLLVVRVFMGIGEGVAMPAMNNI 218 (512)
Q Consensus 187 ~~~~------------------------~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~ 218 (512)
++-+ . .-+..++++.++.|+|....++...++
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 5421 0 013567888999999999999999999
Q ss_pred HhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc---------------------cC-chhHHHHHHHHHHHHHHH
Q 010343 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR---------------------FG-WPSVFYSFGSLGTVWFTV 276 (512)
Q Consensus 219 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------------~g-~~~~f~~~~~~~~~~~~~ 276 (512)
+-|..++++-+..+|+..+...+|.++|-++++.+... .| |...|++.+++.++..+.
T Consensus 166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip 245 (539)
T PF03137_consen 166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP 245 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877642 12 666777788888888777
Q ss_pred HhhhccCCCCCCCCCCh------hhhHhhhhcccc---------CCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHH
Q 010343 277 WLSKAHSSPAEDPQLRP------AEKKLIVSSCAS---------KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341 (512)
Q Consensus 277 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (512)
.+.++++-|...+..++ ++++...++..+ ..++.....+++++||.+....+...+......++.
T Consensus 246 l~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~ 325 (539)
T PF03137_consen 246 LFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFA 325 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 77777665544111000 000000000000 012223456788999999999999999999999999
Q ss_pred HhhHHHHHHhhcCCccchhhhhhhhHH-HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHH--HHHhh-----
Q 010343 342 TWMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF--FLTQL----- 413 (512)
Q Consensus 342 ~~~~~~l~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----- 413 (512)
+|+|.|++.+++.++.+++++.....+ +.++|.+++|++.+|++.+..-. .+......++.... ..+..
T Consensus 326 tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~---~~~~~v~~~v~~~~~~~~~~~~C~~~ 402 (539)
T PF03137_consen 326 TFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA---AKFCIVVSIVSVILYSPLFFLGCPNP 402 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH---HHHHHHHHHHHHHHHHHHHeecCCCC
Confidence 999999999999999999998877665 77888999999999986552111 11111111111111 00000
Q ss_pred -------cc------------------------------------CChhHHHHH-HHHHHhhhhhhhhchhhhhhhhhcC
Q 010343 414 -------SH------------------------------------VDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP 449 (512)
Q Consensus 414 -------~~------------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (512)
.. .+....+.+ .++..........+......+-+++
T Consensus 403 ~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~ 482 (539)
T PF03137_consen 403 PIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPP 482 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCCh
Confidence 00 000111112 2222333344455666667788889
Q ss_pred cchhhHHHHHHHHHh-HHHHHHHHhhhheeec
Q 010343 450 RYSGVLLGLSNTAGV-LAGVFGTAATGYILQH 480 (512)
Q Consensus 450 ~~~g~~~g~~~~~~~-~g~~ig~~l~g~l~~~ 480 (512)
++|+.+.|+...+.. +|.+-||.+.|.+.|.
T Consensus 483 ~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 483 EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------
T ss_pred hhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 999999999986664 5889999999999997
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=133.69 Aligned_cols=253 Identities=15% Similarity=0.142 Sum_probs=189.5
Q ss_pred HHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 010343 114 LLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 193 (512)
.+...+....+|.+-.+.+++|++..|++.+.........+..++.|.++||+|||+..++..++.+++++.- ..+ +
T Consensus 44 ~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~--~ 120 (354)
T PF05631_consen 44 LLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSS--N 120 (354)
T ss_pred HHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hcc--c
Confidence 3344556667777667778999999999999999999999999999999999999999999999998888644 345 8
Q ss_pred hHHHHHHHHHHhhhhhchhhHHHHHHhcc-----cCCcchhHHHHHHH-HhhhhHHHHHHhHHHHHhcccCc--hhHHHH
Q 010343 194 LPFLLVVRVFMGIGEGVAMPAMNNILSKW-----VPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGW--PSVFYS 265 (512)
Q Consensus 194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~-----~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~--~~~f~~ 265 (512)
++.+++.|++.|++.+..+.+..++...- +|++..+..++... ..+++-.+++.+++.++.+..+. ..+|..
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~ 200 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDA 200 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999999988877532 33444455555555 34455566677777777776654 789998
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhH
Q 010343 266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 345 (512)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 345 (512)
...+.++..++.....+|+..+..+..+..+.. ...++.+++||+++.+.+...+.-...+.+.....
T Consensus 201 a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~------------~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWt 268 (354)
T PF05631_consen 201 AIVLLAVAAVLILKTWPENYGDTSSSSSLSGSF------------REAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWT 268 (354)
T ss_pred HHHHHHHHHHHHHhcccccCCCcccccchHHHH------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeee
Confidence 888888887777766666654422221111111 23467788899999999999998888888776655
Q ss_pred HHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHH
Q 010343 346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT 383 (512)
Q Consensus 346 ~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr 383 (512)
+-++. +-.....|++++.+.++.++|+.+..++..|
T Consensus 269 PaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 269 PALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred ceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55552 2234457999999999999999988766654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-15 Score=146.56 Aligned_cols=363 Identities=17% Similarity=0.092 Sum_probs=249.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCh-hhHHHHHHHH----HHHHHHHHhhhhHhHhhcCChHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNP-ATVGLIQSSF----FWGYLLTQIAGGIWADTVGGKAVLGFGV 176 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~----~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 176 (512)
.+......++-.|..++.........+......+.+. ...+...... .+...+..+..|.++||+|||..+....
T Consensus 20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~ 99 (463)
T KOG2816|consen 20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL 99 (463)
T ss_pred hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence 3445556666666666666556666666555554322 2333344444 6788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHhhh--hhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh
Q 010343 177 VWWSIATALTPVAAKLGLPFLLVVRVFMGIG--EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 254 (512)
....+..+...+.. +|.++ +.++. .+.......++++|....++|...+|+.......+..++|.+++.+.
T Consensus 100 ~~~~l~~~~~~~~~---~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 100 FGTILPALCLLFQG---YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred HHHHHhHHHHHHHH---HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888877776654 33333 33332 23456778899999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhh-hHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHH
Q 010343 255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE-KKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333 (512)
Q Consensus 255 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (512)
...|.-..|.+..+..++..+......||+..++++..... .............+.....+..-.+|..+.+++..++.
T Consensus 173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~ 252 (463)
T KOG2816|consen 173 KFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLS 252 (463)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHH
Confidence 99999999999999999998888888887665544331000 00000000000000011111222355555555555554
Q ss_pred HHHHHH-HHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHH-HHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH
Q 010343 334 NWGTFI-LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGG-WIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411 (512)
Q Consensus 334 ~~~~~~-~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (512)
...... ..-..+.|+...++++..+.+.+.+..+....++..+.. .+...++.+ ..+..++..-.....
T Consensus 253 ~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~---------~~i~lGl~~~~~~~~ 323 (463)
T KOG2816|consen 253 SLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK---------RLISLGLLSEFLQLL 323 (463)
T ss_pred HHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHHHHHHHH
Confidence 444332 222457778888999999999999999999999988876 777778877 355556655555555
Q ss_pred hhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
........|................+.........+.++++|+++++...+..+...++|.+.+.++..
T Consensus 324 ~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 324 LFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 555566666655555555554444444444455667789999999999999999999999999988654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=142.59 Aligned_cols=374 Identities=13% Similarity=0.046 Sum_probs=227.8
Q ss_pred hhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcC-----ChHHHHHHHHHHHHHHHHHHHHhh--cChHH
Q 010343 124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLGFGVVWWSIATALTPVAAK--LGLPF 196 (512)
Q Consensus 124 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 196 (512)
....|.+.+++|+++++...+.++..++..+ .++.|.++|-+. ||.-++++.++.+++.+.++..+. .+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 3446778999999999999998888877654 788999999863 444566666666555555554432 14566
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHhcccC--CcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHH
Q 010343 197 LLVVRVFMGIGEGVAMPAMNNILSKWVP--VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF 274 (512)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 274 (512)
..++.++..+|.........+++.|... +++++...+.......+|.+++..++|.+.+..+++..|.+.+++.++..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 6777788899999999999999999883 34478888899999999999999999999999999999999888887776
Q ss_pred HHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhc
Q 010343 275 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIV-SHFCHNWGTFILLTWMPTYYNQVLH 353 (512)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~~g 353 (512)
+..+...+|.+...........+..........++.....++.++.|.+|...+ ..++............-.+..+..+
T Consensus 169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~ 248 (433)
T PF03092_consen 169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALG 248 (433)
T ss_pred HHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecccc
Confidence 666666665221111100000000000000000111334566777888877666 3222222211111100011223345
Q ss_pred ---CCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH--hh-c-------cCChhH
Q 010343 354 ---FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QL-S-------HVDSPA 420 (512)
Q Consensus 354 ---~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-------~~~~~~ 420 (512)
+++...+.+..+..++.++|..+..+...+...|+ ......++.....+. .+ . ..+.+.
T Consensus 249 gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~--------~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f 320 (433)
T PF03092_consen 249 GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR--------IFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF 320 (433)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence 77777787776677777777776665555444442 222222222111111 01 0 111111
Q ss_pred HHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc--------chhHHHHHHH
Q 010343 421 MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS--------WDDVFKVSVG 492 (512)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g--------~~~~~~~~~~ 492 (512)
...-..+..........+......+..|+...|+.+++...+.++|..++..++..+.+..+ .....+++.+
T Consensus 321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~ 400 (433)
T PF03092_consen 321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV 400 (433)
T ss_pred EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence 11222223333333344555556666777889999999999999999999999999887754 3344555555
Q ss_pred HHHHHHHHHHHhcC
Q 010343 493 LYLVGTAVWNLFST 506 (512)
Q Consensus 493 ~~~~~~~~~~~~~~ 506 (512)
+.++...+..++.+
T Consensus 401 ~~ll~l~ll~lLp~ 414 (433)
T PF03092_consen 401 IQLLPLPLLFLLPP 414 (433)
T ss_pred HHHHHHHHHHHcCC
Confidence 55555555444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=145.57 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=135.4
Q ss_pred hhhhhhhhhhcccCCCh--------hhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhh--
Q 010343 122 NMSIAILPMSAEFNWNP--------ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK-- 191 (512)
Q Consensus 122 ~~~~~~~~~~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-- 191 (512)
......+.+.++.|.++ .+.+.+.++..+...++.++.|++.||+|+|+++.++.++.+++..+......
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~ 305 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY 305 (418)
T ss_pred HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 34445566666666543 66799999999999999999999999999999999999998888766665321
Q ss_pred cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHH-HhhhhHHHHHHhHHHHHhcc------cCchhHHH
Q 010343 192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHR------FGWPSVFY 264 (512)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------~g~~~~f~ 264 (512)
.+++.+++.+++.|++.+...+....++.|.+|+++|++++|+.+ ...++|..+||.++|.+.++ +||+..|.
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~ 385 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL 385 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 024567778999999999888999999999999999999999997 67889999999999999987 46999999
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 010343 265 SFGSLGTVWFTVWLSKAHSS 284 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ 284 (512)
+.+++.++..++.+++.+++
T Consensus 386 ~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 386 FFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 98888888877777777654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=135.85 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=134.4
Q ss_pred hhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Q 010343 121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV 200 (512)
Q Consensus 121 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (512)
......++.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+ +.+.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 308 (399)
T PRK05122 233 GTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALIG 308 (399)
T ss_pred HHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHH
Confidence 3344445555556665 3456777888889999999999999999999999988888888888777777 77788888
Q ss_pred HHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhh
Q 010343 201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK 280 (512)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 280 (512)
.++.|++.+...+.....+.+.+|+++|++++++++....+|..+++.+.|.+.+..||++.|++.+++.++..+.....
T Consensus 309 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 309 AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888888888999999999999999999999999999999999999999999999888888776666665
Q ss_pred ccCCC
Q 010343 281 AHSSP 285 (512)
Q Consensus 281 ~~~~~ 285 (512)
.++++
T Consensus 389 ~~~~~ 393 (399)
T PRK05122 389 YRRAP 393 (399)
T ss_pred ccccc
Confidence 55433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=139.78 Aligned_cols=152 Identities=11% Similarity=0.079 Sum_probs=129.1
Q ss_pred hhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 010343 123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV 202 (512)
Q Consensus 123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (512)
.....+.+.+++|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++.+++.++..+.+..+...+++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 33445556778899999999999999999999999999999999999999999888888887777665222233455677
Q ss_pred HHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHH
Q 010343 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF 274 (512)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 274 (512)
+.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||++.|.+.+++.++..
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 888888877788888999999999999999999999999999999999999999999999998887766643
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=119.38 Aligned_cols=136 Identities=24% Similarity=0.419 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccC
Q 010343 145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224 (512)
Q Consensus 145 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 224 (512)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.+ +++.+.+.+++.|++.+...+...+++.|.+|
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 3456778889999999999999999999999998888888888877 88999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhcc
Q 010343 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282 (512)
Q Consensus 225 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 282 (512)
+++|++.+++.+....+|..+++.+.+.+.+..+|++.+++.+++.++..+......+
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999988877777666665544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-13 Score=133.69 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=126.5
Q ss_pred hhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Q 010343 122 NMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV 200 (512)
Q Consensus 122 ~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (512)
.+....|. +.+++|.++.+.|++.+...+...++.++.|+++||+|||+.+..+.....+......+.+ +.+.+++.
T Consensus 234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 311 (393)
T PRK15011 234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--SPAILLGL 311 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 34445665 4567899999999998888888888999999999999999988877666555554444555 67777788
Q ss_pred HHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhh
Q 010343 201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK 280 (512)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 280 (512)
+++.+++.+...+....+..|..| +++++++++++....+|..+++.++|.+.+.+||+..|++.+++.++..+..+..
T Consensus 312 ~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 312 QLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888777777788889886 5699999999999999999999999999999999999998877777766555544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-14 Score=139.93 Aligned_cols=149 Identities=10% Similarity=0.074 Sum_probs=129.8
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchh
Q 010343 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM 212 (512)
Q Consensus 133 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 212 (512)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++..+.+ +.+.+++.+++.|++.+...
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~~~ 333 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSILKLLHAFEVPFLL 333 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence 3467778899999999999999999999999999999999999999888888888887 78888899999999988888
Q ss_pred hHHHHHHhcccCCcchhHHHHH-HHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccC
Q 010343 213 PAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 213 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 283 (512)
+....++.+.+|++.++...+. ++....+|.++++.+.|++.+..||+..|.+.+++.++..++.+...++
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888999999999888887665 6777889999999999999999999999999888877766666555444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=136.27 Aligned_cols=159 Identities=14% Similarity=0.015 Sum_probs=130.6
Q ss_pred hhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Q 010343 120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLV 199 (512)
Q Consensus 120 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (512)
........|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|+|+.+..+.+...++.++..+.+ +.+.+.+
T Consensus 236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 313 (406)
T PRK11551 236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLL 313 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHH
Confidence 33444457788888999999999999999999999999999999999999998887777777766666666 6777777
Q ss_pred HHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHHHHHHHHHHHHHHh
Q 010343 200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 278 (512)
..++.|++.+...+...+++.|.+|+++|++.+|+.+....+|..+||.++|.+.++.+ |...++..+...++..++.+
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 88888998888888899999999999999999999999999999999999999998754 55556655555555444444
Q ss_pred hh
Q 010343 279 SK 280 (512)
Q Consensus 279 ~~ 280 (512)
..
T Consensus 394 ~~ 395 (406)
T PRK11551 394 LL 395 (406)
T ss_pred HH
Confidence 43
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=133.73 Aligned_cols=165 Identities=12% Similarity=0.036 Sum_probs=141.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP 187 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 187 (512)
...+..++.......+....|.+.+++|.++.++|++.++..++..+..++.+++.||+|.|+.+.++.++.++..++.+
T Consensus 209 ~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 209 RFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555566667777788999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHH-HhhhhHHHHHHhHHHHHhcccCchhHHHHH
Q 010343 188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSF 266 (512)
Q Consensus 188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 266 (512)
+.+ +.+.+++.++++|+..+...+....++.+. |++++++..++++ ...++|..+|+.++|.+.+++|+ ..|++.
T Consensus 289 ~~~--~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~ 364 (382)
T TIGR00902 289 AIE--AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFM 364 (382)
T ss_pred hHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 888 889999999999999999999999999998 8999999999986 56789999999999999999986 667777
Q ss_pred HHHHHHHHHH
Q 010343 267 GSLGTVWFTV 276 (512)
Q Consensus 267 ~~~~~~~~~~ 276 (512)
+++.++..++
T Consensus 365 ~~~~~~~~~~ 374 (382)
T TIGR00902 365 AIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHH
Confidence 7777665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-13 Score=134.35 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=125.6
Q ss_pred HHHhhhhhhhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHH-HHHHhh
Q 010343 114 LLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL-TPVAAK 191 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~ 191 (512)
++.....+.....+|.+. +++|.+..+.++......++..++.++.|+++||+|||+.+..+.++..+.... ......
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444455555677755 568999888888888889999999999999999999999988777654433322 222221
Q ss_pred cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHHHHHHH
Q 010343 192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLG 270 (512)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~ 270 (512)
.+...+++.+++.|++.+........++.+.+|++.|++++|+......+++.++|.+.+++.+..+ |+.++++..+.+
T Consensus 340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~ 419 (490)
T PRK10642 340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA 419 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 1566777888998888777777788888999999999999998666666777889999999887654 777776666666
Q ss_pred HHHHHHHhhhccCCCC
Q 010343 271 TVWFTVWLSKAHSSPA 286 (512)
Q Consensus 271 ~~~~~~~~~~~~~~~~ 286 (512)
++..+..++. ||+++
T Consensus 420 ~i~~~~~~~~-pes~~ 434 (490)
T PRK10642 420 VIGLITGVTM-KETAN 434 (490)
T ss_pred HHHHHHHHHh-ccccC
Confidence 5555554443 55554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=138.73 Aligned_cols=176 Identities=13% Similarity=0.044 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT 183 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 183 (512)
.++.+++..++.+.........+|.+ .+++|++..+.++..+...++..++.+++|+++||+|+|+.+.....+..++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555555555555555566667764 56799999999999999999999999999999999999988766554444333
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhh-HHHHHHhHHHHHhc-------
Q 010343 184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIH------- 255 (512)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~------- 255 (512)
.+..+....+.+.+.+..++.|++.............|.+|+++++++.|+.+...++ |..++|.+.|.+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 2222222115556667788888654433333446677999999999999999999886 77999999999999
Q ss_pred -----ccCchhHHHHHHHHHHHHHHHHhhh
Q 010343 256 -----RFGWPSVFYSFGSLGTVWFTVWLSK 280 (512)
Q Consensus 256 -----~~g~~~~f~~~~~~~~~~~~~~~~~ 280 (512)
..||+..|++.++..++..+..+..
T Consensus 419 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 419 IFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998877777765555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=137.13 Aligned_cols=161 Identities=17% Similarity=0.158 Sum_probs=132.6
Q ss_pred hhhhhhhhhhhcccCCChh----hHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 010343 121 VNMSIAILPMSAEFNWNPA----TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF 196 (512)
Q Consensus 121 ~~~~~~~~~~~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (512)
....+..+.+.++.+.+.. ..+++.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.+ +.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 313 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQ 313 (408)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHH
Confidence 3344455555554433332 346666777888889999999999999999999998888877777777666 7788
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHH
Q 010343 197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV 276 (512)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 276 (512)
+++.+++.|++.+...+...+.+.+..+++++++.+++.+....+|..+||.++|.+.+..||++.|++.+++.++..++
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999888887776
Q ss_pred HhhhccC
Q 010343 277 WLSKAHS 283 (512)
Q Consensus 277 ~~~~~~~ 283 (512)
.+...++
T Consensus 394 ~~~~~~~ 400 (408)
T PRK09874 394 SWNSLRR 400 (408)
T ss_pred HHHHHHH
Confidence 6654443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=131.93 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=133.4
Q ss_pred hhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Q 010343 120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLV 199 (512)
Q Consensus 120 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (512)
........+.+.++.|.+. .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.+ +.+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 307 (392)
T PRK12382 232 FAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALA 307 (392)
T ss_pred HhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHH
Confidence 3344445556666666653 56667778888899999999999999999999999988888888777776 7778888
Q ss_pred HHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhh
Q 010343 200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279 (512)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 279 (512)
..++.|++.+...+...+.+.+.+|+++|++++|+.+....+|..+||.+.+.+.++.||+..|.+.+++.++..++.+.
T Consensus 308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 89999999998888888899999999999999999999999999999999999999999999999998888777666654
Q ss_pred hc
Q 010343 280 KA 281 (512)
Q Consensus 280 ~~ 281 (512)
..
T Consensus 388 ~~ 389 (392)
T PRK12382 388 SF 389 (392)
T ss_pred hc
Confidence 43
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=136.41 Aligned_cols=161 Identities=13% Similarity=0.042 Sum_probs=137.8
Q ss_pred hhhhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 010343 123 MSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR 201 (512)
Q Consensus 123 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (512)
+....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.+ +.+...++.
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 319 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCL 319 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHH
Confidence 34456666666 899999999999999999999999999999998888888888888888877777776 777778888
Q ss_pred HHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhc
Q 010343 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
++.|++.+...+...+++.+..|++.|++++|++.....+|..+|+.+.|.+.+.+|++..++..++..++..++.....
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999988877888899999999999999999999999999999999999999999999999888877777666666655
Q ss_pred cCCC
Q 010343 282 HSSP 285 (512)
Q Consensus 282 ~~~~ 285 (512)
++.+
T Consensus 400 ~~~~ 403 (417)
T PRK10489 400 GELR 403 (417)
T ss_pred cccc
Confidence 5444
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-13 Score=131.33 Aligned_cols=152 Identities=15% Similarity=0.054 Sum_probs=124.4
Q ss_pred hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH-HHHHHhhcChHHHHHHHHHHh
Q 010343 127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTPVAAKLGLPFLLVVRVFMG 205 (512)
Q Consensus 127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~l~G 205 (512)
.|.+.+++|.+..+.+++.+...++..++.++.|++.||+++|+... +..+..++.. +....+ +.+.++++.++.|
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~g 305 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAAN--SEWHLSVLSIFWG 305 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhc--hHHHHHHHHHHHH
Confidence 34456668999999999999999999999999999999999886544 4444444433 333444 6777888899999
Q ss_pred hhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhcc
Q 010343 206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 282 (512)
++.+...+...+.+.+..| ++|++++|+++....+|..+||+++|.+.+++|++..|++.+++.++..+......+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9988777888888888875 688999999999999999999999999999999999999998888887777666554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-13 Score=129.65 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=126.9
Q ss_pred hhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 010343 125 IAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF 203 (512)
Q Consensus 125 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 203 (512)
...|. +.+++|.++.+.|++.+.......++.++.|++.||+|+|+.+..+.++..+......+.+ +.+.+++.+++
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 297 (375)
T TIGR00899 220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN--SLWALLMLQLL 297 (375)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33444 4567899999999998888888888899999999999999998888776666655555555 67778888899
Q ss_pred HhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhh
Q 010343 204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279 (512)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 279 (512)
.|++.+...+....++.|..|+ ++++++++.+....+|..++|.+++.+.+..||+..|++.+++.++..++..+
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 9999888888888899998864 66799999999999999999999999999999999999988877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=136.94 Aligned_cols=138 Identities=11% Similarity=0.030 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhc
Q 010343 142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK 221 (512)
Q Consensus 142 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 221 (512)
.+...+..++.+++.++.|+++||+|||++++++.++.+++.+++++.+ +...+++.+++.|++.+..++...++++|
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788999999999999999999999999999999999888887 77778888889999888889999999999
Q ss_pred ccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccC
Q 010343 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 222 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 283 (512)
++|.++|++++|+.++...+|.++||++++.+.+. +...+|++.+++.++..++.+++ |+
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PE 735 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PD 735 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 99999999999999999999999999999988764 45677877777777666555544 44
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-13 Score=128.13 Aligned_cols=169 Identities=25% Similarity=0.363 Sum_probs=149.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhccc-CCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChH-HHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEF-NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA-VLGFGVVWWSIATALT 186 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~ 186 (512)
..+..++............|.+.++. |.+..+.++..+...++..++.++.|++.||+|+|+ .+..+..+..++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344555555666666677766654 999999999999999999999999999999999999 9999999999999988
Q ss_pred HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH
Q 010343 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF 266 (512)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 266 (512)
.+.+ +.+.+++..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+++.
T Consensus 260 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~ 337 (352)
T cd06174 260 ALAP--SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337 (352)
T ss_pred HHhc--cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 8887 78889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 010343 267 GSLGTVWFTVWLS 279 (512)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (512)
+++.++..+..+.
T Consensus 338 ~~~~~i~~i~~~~ 350 (352)
T cd06174 338 AALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHhee
Confidence 9888877665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=128.15 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=126.4
Q ss_pred hhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 010343 122 NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR 201 (512)
Q Consensus 122 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (512)
.....+|.+.++.|.++.+.|++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... . . .......
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~-~~~~~~~ 292 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S--Q-AAMAPAL 292 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h--h-HHHHHHH
Confidence 334457777778899999999999999999999999999999999999999888877777665443 2 2 2234466
Q ss_pred HHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhh
Q 010343 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK 280 (512)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 280 (512)
++.|++.....|...+.+.|..|+++++...+......++|..+||.++|++.+++||++.|.+.+.+.++..+..++.
T Consensus 293 ~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 293 FILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 7778777777899999999999888888888888889999999999999999999999999999888877665554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=127.57 Aligned_cols=171 Identities=15% Similarity=0.021 Sum_probs=132.4
Q ss_pred HHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 010343 113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 192 (512)
.++............|.+.+++|.+..+.|...+++.++..++.++.|++.||+|||+.+..+..+..++.++....+.
T Consensus 214 ~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~- 292 (393)
T PRK09705 214 FGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL- 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-
Confidence 3333444445556677777778999999999999999999999999999999999999998888777777665543331
Q ss_pred ChHHHHHHHHHHhhhhhchhhHHHHHHhcccC-CcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHHHHHHH
Q 010343 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLG 270 (512)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~ 270 (512)
+...+ ..++.|++.+...+.......+..+ ++++++.+|+.+....++..++|.+.|++.+..| |...|.+.++..
T Consensus 293 ~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~ 370 (393)
T PRK09705 293 QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCV 370 (393)
T ss_pred hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 22222 2345688877778877777777775 5788999999999999999999999999999886 788888877777
Q ss_pred HHHHHHHhhhccCCCC
Q 010343 271 TVWFTVWLSKAHSSPA 286 (512)
Q Consensus 271 ~~~~~~~~~~~~~~~~ 286 (512)
++..+....+.+|++.
T Consensus 371 ~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 371 VGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHhcccccc
Confidence 7766666666665543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=129.21 Aligned_cols=170 Identities=15% Similarity=0.008 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChH--HHHHHH------
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA--VLGFGV------ 176 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~------ 176 (512)
++...+..++............|.+ .+++|.++.+.+++.+...++..++.++.|++.||++||+ ......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 3444455555555666666666665 4568999999999999999999999999999999999996 111111
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 177 VWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
++..+........+ +.+..+....+.+++.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 297 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 297 LVLSLLMFATNYVN--IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HHHHHHHHHhccch--hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 11111111111111 23333333444444444 7889999999999999999999999999999999999999999999
Q ss_pred cC-chhHHHHHHHHHHHHHHHHh
Q 010343 257 FG-WPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 257 ~g-~~~~f~~~~~~~~~~~~~~~ 278 (512)
.| |+..|++.+++.++..+..+
T Consensus 374 ~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 374 TGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred CCchhHHHHHHHHHHHHHHHHHH
Confidence 88 99999988887776655544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-12 Score=122.60 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=148.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
+++.+........+........+.+.-|.+.+..|+|...++++.-++.++..++..+.|++.|| +.|+.+.....+.+
T Consensus 209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a 287 (394)
T COG2814 209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA 287 (394)
T ss_pred cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence 34445555555555555556677777888999999999999999999999999999999999999 99999998888888
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
+..+.+.+..+ +.+..++.-++.|+............+++ ..+|.++.+.+++....++|..+|..++|.+.+++|+.
T Consensus 288 ~~~l~l~~~~~-~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~ 365 (394)
T COG2814 288 LALLALTFTGA-SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA 365 (394)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 88877776663 45666777777888877666666777777 44788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCC
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSS 284 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~ 284 (512)
...++.+++.++..++.+...+.+
T Consensus 366 ~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 366 ATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998888877776655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=129.18 Aligned_cols=170 Identities=12% Similarity=0.116 Sum_probs=135.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
.+.+..++.......+....|.+. +++|+++.+.+.+.+.+.++..++.++.|++.||+++|+.+.....+..+...+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 209 FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 333444444444445556677766 6689999999999999999999999999999999999999888777777666666
Q ss_pred HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH
Q 010343 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF 266 (512)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 266 (512)
...+ +.+.+.+..++.|++.+...+...+...+..+ +++++..+.......+|..++|.+.|.+.+..|++..+++.
T Consensus 289 ~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~ 365 (394)
T PRK03699 289 VNTD--DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTA 365 (394)
T ss_pred HHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhh
Confidence 5565 66667777888899888788888888887774 55678889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhh
Q 010343 267 GSLGTVWFTVWLSK 280 (512)
Q Consensus 267 ~~~~~~~~~~~~~~ 280 (512)
+++.++..+.+...
T Consensus 366 ~~~~~~~~~~~~~~ 379 (394)
T PRK03699 366 NGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777765544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=129.37 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=124.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 399 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 399 (512)
++.++.+.+..++...+.+....++|.|+++++|++..+.|+..+...++.++++++.|+++||+|+|+...
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~-------- 77 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYML-------- 77 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH--------
Confidence 345677778888888889999999999998889999999999999999999999999999999999985322
Q ss_pred HHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhhee
Q 010343 400 SIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL 478 (512)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~ 478 (512)
.+.+...+........++.+.......+.+.......+...... +..++++|+++.|+.+...++|..++|.+++.+.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 78 -LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222233343333332222222223333344444 4455678999999999999999999999999987
Q ss_pred ecCcchhHHHHHHHHHHHHHHHHHH
Q 010343 479 QHGSWDDVFKVSVGLYLVGTAVWNL 503 (512)
Q Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (512)
+ .+|+..|.+.+++.+++.++..+
T Consensus 157 ~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 157 M-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred H-hccCcHHHHHHHHHHHHHHHHHH
Confidence 5 68999999888877776554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=137.12 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=131.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc--CChHHHHH--HHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGF--GVVWWSIAT 183 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~--~~~~~~~~~ 183 (512)
......++...........+|.+.+++|.+..+.+++.++..++..+++++.|++.||. ++|+...+ +.++.+++.
T Consensus 245 ~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ 324 (455)
T TIGR00892 245 VYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTH 324 (455)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555566777788999999999999999999999999999999984 33433333 334344444
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc-CchhH
Q 010343 184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSV 262 (512)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~ 262 (512)
+++.+.+ +++.+++.+++.|++.+...+...+++.|.+|++++++.+|+++....+|..+||.++|.+.+.. +|++.
T Consensus 325 ll~~~~~--~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~ 402 (455)
T TIGR00892 325 LLCALAG--DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYI 402 (455)
T ss_pred HHHHHhc--hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchH
Confidence 5555666 78888889999999999999999999999999999999999999999999999999999999887 49999
Q ss_pred HHHHHHHHHHHHH
Q 010343 263 FYSFGSLGTVWFT 275 (512)
Q Consensus 263 f~~~~~~~~~~~~ 275 (512)
|++.+++.++..+
T Consensus 403 f~~~~~~~li~~~ 415 (455)
T TIGR00892 403 FYASGSIVVSAGL 415 (455)
T ss_pred HHHhhHHHHHHHH
Confidence 9988877666544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-13 Score=133.10 Aligned_cols=177 Identities=11% Similarity=0.030 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhc-ccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc--CChHHH-HHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSI 181 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~ 181 (512)
++...+..++...........+|.+.+ +.|.+..+.+++..++.++..++.++.|+++||+ +||+.. .....+..+
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~ 334 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 334 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 334444444444444455566777665 4789999999999999999999999999999999 455432 222233333
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHH-HHhHHHHHhcccCch
Q 010343 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT-GLAFSPFLIHRFGWP 260 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~g~~ 260 (512)
+.++..+....+.+...++.++.|.+..........+..|.+|+++|++++|+.+....+|..+ +|.+.|.+.++.||+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~ 414 (452)
T PRK11273 335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 414 (452)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcch
Confidence 3333323221134444445555555433333334456779999999999999999988888654 799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAH 282 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~ 282 (512)
..|++.++.+++..+.......
T Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 415 GGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999888877776665554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=130.56 Aligned_cols=176 Identities=10% Similarity=0.001 Sum_probs=119.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc--CChHHH-HHHHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSIAT 183 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~ 183 (512)
.+.+..++...........+|.+. +++|++..+.+...+.+.++..++.++.|+++||+ ++|+.. ....+...+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~ 326 (434)
T PRK11663 247 LLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHH
Confidence 333444444444445555666655 67899999999999999999999999999999998 333332 22211111111
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHH
Q 010343 184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 263 (512)
......+..+...+.+..+..|++...........+.|.+|+++|++++|+.+....+|..++|.+.+++.+..||+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f 406 (434)
T PRK11663 327 GSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFF 406 (434)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHH
Confidence 11111121133333344444554433222333456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 010343 264 YSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~ 283 (512)
++.+++.++..+..+...++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 407 VVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99988888776666554443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-13 Score=136.51 Aligned_cols=183 Identities=11% Similarity=0.053 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
+..++..++..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+.++.+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 362 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC 362 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44555555555555555555666678888899999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHH---hhc------ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHH
Q 010343 183 TALTPVA---AKL------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253 (512)
Q Consensus 183 ~~~~~~~---~~~------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 253 (512)
.++..+. ... +...+....++.+.......+....++.|.+|+++|++++++.+....+|.+++|.+.+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~ 442 (481)
T TIGR00879 363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM 442 (481)
T ss_pred HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666521 110 1122222333333333334466677889999999999999999999999999999999999
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHhhhccCCC
Q 010343 254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285 (512)
Q Consensus 254 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 285 (512)
.+..+|++.|++.++++++..++.+.+.++.+
T Consensus 443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 443 LESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 99999999999988888887777766655433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-13 Score=131.71 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH-
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT- 183 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~- 183 (512)
+.......++............|.+. +++|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 300 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 33344444444555555556667655 6789999999999999999999999999999999999998775554443322
Q ss_pred H-HHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHH-HHhhhhHHHHHHhHHHHHhcccC-ch
Q 010343 184 A-LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV-YSGMYLGSVTGLAFSPFLIHRFG-WP 260 (512)
Q Consensus 184 ~-~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~g-~~ 260 (512)
. ...+....+.+.+++..++.|++.+...+...+++.|.+|+++|++++++. +....+|..++|.++|.+.++.| |+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 380 (394)
T TIGR00883 301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWY 380 (394)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcch
Confidence 2 222222125666777788899998889999999999999999999999984 55667899999999999999988 88
Q ss_pred hHHHHHHHHHH
Q 010343 261 SVFYSFGSLGT 271 (512)
Q Consensus 261 ~~f~~~~~~~~ 271 (512)
..++...+..+
T Consensus 381 ~~~~~~~~~~l 391 (394)
T TIGR00883 381 AIGYYLAALAL 391 (394)
T ss_pred hHHHHHHHHHH
Confidence 87776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=132.97 Aligned_cols=151 Identities=12% Similarity=0.132 Sum_probs=118.1
Q ss_pred hhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Q 010343 122 NMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV 200 (512)
Q Consensus 122 ~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (512)
.....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+..+..+..+........+.+.+.+.
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445677766 589999999999999999999999999999999999999988887766665544433331133444444
Q ss_pred HHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHH
Q 010343 201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272 (512)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 272 (512)
.++.++......+...+++.+.+|+++|++.+++.+....+|..+||.++|.+.+.+||+..+...+....+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 555444444455677788999999999999999999999999999999999999999999888665544433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-10 Score=108.14 Aligned_cols=346 Identities=10% Similarity=0.070 Sum_probs=229.5
Q ss_pred hhhhhhhhhhcc-cCCChhhHH-HHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Q 010343 122 NMSIAILPMSAE-FNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLV 199 (512)
Q Consensus 122 ~~~~~~~~~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (512)
.-....|++.+. .|++..|+. -+.-...-.++...++...+.|..+.|++++++.+...+...++.+.+ +...+-+
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~ 99 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQL 99 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHH
Confidence 333445566665 789998875 355566667788889999999999999999999999999999998988 9999999
Q ss_pred HHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc--cCchhHHHHHHHHHHHHHHHH
Q 010343 200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTVWFTVW 277 (512)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~ 277 (512)
..++.|++.+. ..+..+++-...++++-.++.+...+..-+|..++.+++-.+... .+++...++......++.+..
T Consensus 100 ~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~ 178 (412)
T PF01770_consen 100 MQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA 178 (412)
T ss_pred HHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 778889999999999999999999999999999999999888763 335555555554444444444
Q ss_pred hhhccCCCCC---CCCC-----ChhhhHhhh---hc---cccCCCCC-----------CchHHHhhcChHHHHHHHHHHH
Q 010343 278 LSKAHSSPAE---DPQL-----RPAEKKLIV---SS---CASKEPVK-----------TIPWGLILSKPPVWALIVSHFC 332 (512)
Q Consensus 278 ~~~~~~~~~~---~~~~-----~~~~~~~~~---~~---~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~ 332 (512)
+++++.++.. ++.. .+.+.+... ++ .++..+.. ...+++..++|.++...+-..+
T Consensus 179 ~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~ 258 (412)
T PF01770_consen 179 LFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAF 258 (412)
T ss_pred HHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4444332210 0000 000000000 00 00000000 1245566789999888888888
Q ss_pred HHHHHHHHHHhhHHHHHHh--hcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHH
Q 010343 333 HNWGTFILLTWMPTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL 410 (512)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (512)
...++..+..+.....++. .+-....-|.+-++..+.+.++.+..|++..++.+. ....+....+..+.++
T Consensus 259 atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L 331 (412)
T PF01770_consen 259 ATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLL 331 (412)
T ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHH
Confidence 8888888888887777664 234445568888888888888999999986555544 2233333334444444
Q ss_pred HhhccCChhHHHHHHHH-HHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 411 TQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
+.....++.+...+..+ +..............+......|.-|.++|+.+.+..+-.. .+.-.+.|.
T Consensus 332 ~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt---ilT~iV~d~ 399 (412)
T PF01770_consen 332 FLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQT---ILTLIVVDK 399 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHH---heEEEEEcC
Confidence 45555556555555544 44444444444455555666778889999987765544433 333344553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-13 Score=124.66 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc--CChHH-HHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAV-LGFGVV 177 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~-~~~~~~ 177 (512)
+.+.++.+++++++.+..+..+.-..|. +.|..|+|...+++..+++-++.+.+.+++|+++||+ |||.. -++.++
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4567888899999999999999888877 5667899999999999999999999999999999995 55554 445555
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhh-HHHHHHhHHHHHhcc
Q 010343 178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHR 256 (512)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~ 256 (512)
+..++.+...+.++.|+++..++.++.|+..-+..-.......|..|++--|.+.|+...+..+ |.+.+....+++.|.
T Consensus 330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 5566666666666446688889999999988777777778888999999999999999999999 999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccC
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~ 283 (512)
+||...|++..+.++++.++.......
T Consensus 410 ~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 410 WGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888887777666655543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-11 Score=114.20 Aligned_cols=365 Identities=12% Similarity=0.030 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-CChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFN-WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT 183 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 183 (512)
....+..++++...+.-++....+.+..+.. -+---.+...-.-.+..+++.+..|.+.||..|.++...+.+..-++.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 3456778888999999999988888776653 355556666666777888999999999999999998776655443332
Q ss_pred HHH----H--HHhhc-----C--hHHHHHHHHHHhhhhhchhhHH-HHHHhccc------CCcchhHHHHHHHHhhhhHH
Q 010343 184 ALT----P--VAAKL-----G--LPFLLVVRVFMGIGEGVAMPAM-NNILSKWV------PVAERSRSLALVYSGMYLGS 243 (512)
Q Consensus 184 ~~~----~--~~~~~-----~--~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~------~~~~r~~~~~~~~~~~~~g~ 243 (512)
.+. . +.... + ...+++.-.+.|.......... .++=.||. +++.+.+.++...-.-.+..
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 221 1 11100 0 1222222223333222222111 22222442 35566888888888999999
Q ss_pred HHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhcc----CCCC---CCCCCChhhhHhhh------------hccc
Q 010343 244 VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH----SSPA---EDPQLRPAEKKLIV------------SSCA 304 (512)
Q Consensus 244 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~------------~~~~ 304 (512)
+++|++.|.+.+..+.+....+.++..++...+-+++.. ..|. +++...+++.+... ....
T Consensus 163 llaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
T PF06963_consen 163 LLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLW 242 (432)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHH
Confidence 999999999999889888888877777776654433211 1111 11110000000000 0000
Q ss_pred cCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010343 305 SKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 384 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 384 (512)
+.-.....+|+..+++|.+...+...+++ +...++......|+... |+++...|.+-+...+.++.+.++..++.+|+
T Consensus 243 ~~~~~~~~~w~~Y~~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri 320 (432)
T PF06963_consen 243 NPLRTIIRGWRTYFRQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI 320 (432)
T ss_pred HHHHHHhccHHHHHhCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011134677778877666554444444 44556788888999985 99999999999999999999999999999999
Q ss_pred HhcCCchhhHHHHHHHHHhHHHHHHHHhhccCC-hhH---HHH-HHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHH
Q 010343 385 VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPA---MAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 459 (512)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 459 (512)
|..|.-.++. ..-..++..+.........+ ... .++ ...+.=.+..++-.......++.+++++||+..|+.
T Consensus 321 Glvr~G~~~l---~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq 397 (432)
T PF06963_consen 321 GLVRAGLWSL---WWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQ 397 (432)
T ss_pred cchhhHHHHH---HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHH
Confidence 9775433221 11122222222222222221 111 111 112222333444445555566677888999999999
Q ss_pred HHHHhHHHHHHHHhh
Q 010343 460 NTAGVLAGVFGTAAT 474 (512)
Q Consensus 460 ~~~~~~g~~ig~~l~ 474 (512)
+...++...+.-.+.
T Consensus 398 ~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 398 NSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998877765553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=129.36 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=115.6
Q ss_pred hhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH-HHHHHhhcChHHHHHH
Q 010343 123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTPVAAKLGLPFLLVV 200 (512)
Q Consensus 123 ~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 200 (512)
.....|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++... ...... +.+.+.+.
T Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 334 (405)
T TIGR00891 257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA--NVAVLGLG 334 (405)
T ss_pred hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 3334454 5567899999999999999999999999999999999999998887766543333 222333 55666666
Q ss_pred HHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHHH
Q 010343 201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSF 266 (512)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~ 266 (512)
.++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|++.|.+.+..| |+..+...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 335 LFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 6777777777778888999999999999999999999999999999999999999988 87766653
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=126.38 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=129.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHH-HHHHHHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALT 186 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~ 186 (512)
...+..++............|.+.+++|.+..+.+.+.+...++..++.+..|+++||+|||+.+. .+.+..+++.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l 305 (402)
T TIGR00897 226 LGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLAL 305 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 333444444555555666788888889999999999999999999999999999999999988764 3333333333333
Q ss_pred HHHh---hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHH
Q 010343 187 PVAA---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF 263 (512)
Q Consensus 187 ~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 263 (512)
.+.+ ..+.+..++..++.|++.+...+ ....+.+.. +++|++++|+.+....+|..++|.+++.+.+..||+..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~ 383 (402)
T TIGR00897 306 YYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVV 383 (402)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 2211 11456677788888988876544 455666765 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 010343 264 YSFGSLGTVWFTVWLSK 280 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~ 280 (512)
++.+++.++..++..+.
T Consensus 384 ~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 384 WIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99988887776665554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-12 Score=123.34 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=126.8
Q ss_pred hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 010343 118 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL 197 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (512)
.....+....|.+.++.|.+..++|.+.++..++..+..++.|++.||+|+|+.+..+.++.++..++..+.+ +.+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ 296 (382)
T PRK11128 219 GSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWL 296 (382)
T ss_pred HHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHH
Confidence 3333444455666678999999999999999999999999999999999999999999999888888887777 88888
Q ss_pred HHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHH-HhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHH
Q 010343 198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF 274 (512)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 274 (512)
++..++.|++.+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.+.+|+ ..|+..+++.++..
T Consensus 297 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 297 IVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 9999999999998889999988886 5667788899886 55677889999999999999887 46666666655443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-11 Score=121.71 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=120.3
Q ss_pred hhhhhcccCCChhhHHHHHH-HHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH---HHHhhcChHHHHHHHH
Q 010343 127 ILPMSAEFNWNPATVGLIQS-SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV 202 (512)
Q Consensus 127 ~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 202 (512)
.|.+.+++|++..++|++.. ...++.+++.++.|+++||+|+|+.+.++.++.++..+.+ .... .+.+.+.+..+
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~-~~~~~l~~~~~ 324 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD-KNLYSMGAAVF 324 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 44456779999999999984 6668999999999999999999988776666555544322 2221 14445555566
Q ss_pred HHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhc
Q 010343 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
+..++.+...+...++..+..+++.+++.+++.+....+|..+++.+.|.+.+..||+..|.+.++++++..++....+
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666656666777888889998889999999999999999999999999999999999999998888888766666554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-12 Score=125.94 Aligned_cols=175 Identities=11% Similarity=0.077 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--hcCCccchhhhhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhHHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKI 397 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~ 397 (512)
+.++.+.+..++..+++++...++|.|+++. +|++..+++.+.+.+.++..++.+++|+++|| +|+|+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~-------- 81 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT-------- 81 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH--------
Confidence 4456666677777889999999999999887 89999999999999999999999999999999 798842
Q ss_pred HHHHHhHHHHHHHHhhccCChhHHH-HHHHHHHhhhhhhhhchhhhhhhhh-cCc---chhhHHHHHHHHHhHHHHHHHH
Q 010343 398 MQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDI-APR---YSGVLLGLSNTAGVLAGVFGTA 472 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~g~~~g~~~~~~~~g~~ig~~ 472 (512)
+..+.+..++........++.+.. +...+.+.+ .+...+.......+. +++ +|++++++.+...++|..+||.
T Consensus 82 -l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~ 159 (475)
T TIGR00924 82 -MVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG-SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159 (475)
T ss_pred -HHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc-cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence 222222223222222233333333 333333333 333334444444333 333 4888999999999999999999
Q ss_pred hhhheeecCcchhHHHHHHHHHHHHHHHHHHhc
Q 010343 473 ATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 473 l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
++|++.++.||+..|...++.++++.+.+....
T Consensus 160 l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 160 LAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998877666655544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=123.06 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Q 010343 324 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF 403 (512)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 403 (512)
+.++...++...+.+....+++.|+++++|++..+.|+..+...+...+.+++.|+++||+++|+. . ..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~-------l--~~~~ 83 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM-------I--VTGM 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH-------H--HHHH
Confidence 455677788888888999999999988899999999999999999999999999999999998843 2 2222
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 404 LGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
.............++.+.......+.+...+...+...... +..++++++++.|+.+...++|..+||.++|++. ..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g 162 (400)
T PRK11646 84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD 162 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 22222222222233444433333333333333334444444 4456689999999999999999999999999998 678
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc
Q 010343 483 WDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
|+..|++.+++.++..++.....
T Consensus 163 ~~~~f~~~~~~~~~~~i~~~~~~ 185 (400)
T PRK11646 163 FRLVCATGAVLFVLAAAFNAWLL 185 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988877766655444433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=121.40 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=147.5
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHH
Q 010343 98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV 177 (512)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 177 (512)
++..|+...+.+.+....+..+......+...+.++.|++..++-++.....+...+..+++..+.||+|||+.++.+..
T Consensus 264 ~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~ 343 (485)
T KOG0569|consen 264 NPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS 343 (485)
T ss_pred CcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 33445555555555555555566666666777899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhc--Ch--H---HHHHHHHHHhhhhh-chhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhH
Q 010343 178 WWSIATALTPVAAKL--GL--P---FLLVVRVFMGIGEG-VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF 249 (512)
Q Consensus 178 ~~~~~~~~~~~~~~~--~~--~---~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 249 (512)
++.+..+++...... .. | ..+++.++..++.+ +..|...-+.+|.+|++.|..++++......+...+-...
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~ 423 (485)
T KOG0569|consen 344 LMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA 423 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766543210 11 1 12334444444333 2468888999999999999999999999999999998888
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010343 250 SPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288 (512)
Q Consensus 250 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (512)
...+.+.+|- +.|++..+.+++..+..++..||++.+.
T Consensus 424 fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 424 FPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 8888888887 7888888899999999999999876544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=124.44 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=107.9
Q ss_pred hhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 010343 123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV 202 (512)
Q Consensus 123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (512)
+...+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....+..+...+.+..+
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 44456777777899999999999999999999999999999999999999888877766655444333112222222222
Q ss_pred HHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHH
Q 010343 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS 265 (512)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 265 (512)
..+++.....+....++.|.+|+++|++++|+......+|..++|.+.+++.+.+|+....++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 222222333455667889999999999999999999999999999999999998887654333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=122.44 Aligned_cols=177 Identities=12% Similarity=0.160 Sum_probs=122.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHH-HhcCCchhhHHHH
Q 010343 319 SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTTVRKI 397 (512)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~ 397 (512)
+.+.++.++...+...+.++++..++|.|+++.+|++..+++.+...+.+...++.+++|+++||+ |+|+. .
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~-------i 79 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA-------V 79 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH-------H
Confidence 345667777777888889999999999999988999999999999999999999999999999999 98842 2
Q ss_pred HHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC-c--chhhHHHHHHHHHhHHHHHHHHhh
Q 010343 398 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-R--YSGVLLGLSNTAGVLAGVFGTAAT 474 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~~g~~ig~~l~ 474 (512)
.....+...+..++...................+. +...+....+..+..| + +|.+++++.+...++|+.++|.+.
T Consensus 80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 22222211111111111111111222122222222 2223333444544443 3 689999999999999999999999
Q ss_pred hheeecCcchhHHHHHHHHHHHHHHHHHH
Q 010343 475 GYILQHGSWDDVFKVSVGLYLVGTAVWNL 503 (512)
Q Consensus 475 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (512)
|++.+..||+..|.+.++.++++.+.+..
T Consensus 159 g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 159 GYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766666655544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=119.77 Aligned_cols=165 Identities=18% Similarity=0.266 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHH
Q 010343 327 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP 406 (512)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 406 (512)
++..++...........+|.++.+++|.+..+.+++.+...++..++.++.|++.||+|+|+ .+..+.+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~---------~l~~~~~~~ 72 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR---------VLIIGLLLF 72 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee---------eEeehhhhh
Confidence 34556666777777788886666668999999999999999999999999999999999983 222222222
Q ss_pred HHH-HHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcch
Q 010343 407 AFF-LTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 484 (512)
Q Consensus 407 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~ 484 (512)
++. +......+.+ ......++.+...+...+....+..+ .++++|++++|+.+....+|..++|.+++.+.+..+|+
T Consensus 73 ~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~ 151 (352)
T PF07690_consen 73 ALGSLLLAFASNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWR 151 (352)
T ss_dssp HHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHC
T ss_pred hhHHHHhhhhhhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccc
Confidence 222 2211113444 44444444444434445555555544 45569999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010343 485 DVFKVSVGLYLVGTAVW 501 (512)
Q Consensus 485 ~~~~~~~~~~~~~~~~~ 501 (512)
..|++.+++.++..++.
T Consensus 152 ~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 152 WAFLISAILSLIAAILF 168 (352)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhH
Confidence 99999999988887753
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=124.68 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=140.6
Q ss_pred hhhhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Q 010343 120 RVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLL 198 (512)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (512)
...+...+|.+. +++|.++...|++.++..+|.+++.++.+++.+|+++++++..+.++.+++.+.+++.+ +.+..+
T Consensus 234 ~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--~~~~~~ 311 (524)
T PF05977_consen 234 ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--SFWLAL 311 (524)
T ss_pred hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--HHHHHH
Confidence 333445577755 56899999999999999999999999999999999999999999999999999999988 888889
Q ss_pred HHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHh
Q 010343 199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 278 (512)
+..++.|++........++.+.+..|++.|||.++++++....+..+|.++.|.+.+.+|.+..+.+.++..++..++..
T Consensus 312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887776666555544
Q ss_pred hh
Q 010343 279 SK 280 (512)
Q Consensus 279 ~~ 280 (512)
..
T Consensus 392 ~~ 393 (524)
T PF05977_consen 392 RF 393 (524)
T ss_pred Hh
Confidence 33
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=121.07 Aligned_cols=163 Identities=13% Similarity=0.003 Sum_probs=117.6
Q ss_pred hhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHH--hhcCh
Q 010343 118 MDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA--AKLGL 194 (512)
Q Consensus 118 ~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 194 (512)
..........|. +.+++|.+......+..+..+...++.++.|+++||+|||+.+..+.++..++.+.+... ...+.
T Consensus 264 ~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T PRK09952 264 LTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIF 343 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 333334444554 456788888876666666777778889999999999999999888776655544333221 11123
Q ss_pred HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHh-hhhHHHHHHhHHHHHhccc--CchhHHHHHHHHHH
Q 010343 195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGT 271 (512)
Q Consensus 195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~--g~~~~f~~~~~~~~ 271 (512)
+.+++..++.+++.+...+...+++.|.+|.+.|+.+.++.... ..+|+.++|.+.+++.+.. +|+..+.+.++..+
T Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 423 (438)
T PRK09952 344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCL 423 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 44455667778888888888899999999999999898886554 4589999999999998754 48888887777777
Q ss_pred HHHHHHhhh
Q 010343 272 VWFTVWLSK 280 (512)
Q Consensus 272 ~~~~~~~~~ 280 (512)
+..+..+..
T Consensus 424 i~~v~~~~~ 432 (438)
T PRK09952 424 ISAMTALLM 432 (438)
T ss_pred HHHHHHHHc
Confidence 666655543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=116.04 Aligned_cols=390 Identities=15% Similarity=0.065 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHH-HHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG-VVWWSIATA 184 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~~~~~~~~ 184 (512)
++.+=+.+++.+.....+.+.++.+.+++|+++.++|.+...-.+..+++.|++|.++||+.+||.++++ ++....+.+
T Consensus 13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred hheeeeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3444444566667778888999999999999999999999999999999999999999999877665554 455555555
Q ss_pred HHHHHhhc--ChH----------HHHHHHHHHhhh---------------------------------------------
Q 010343 185 LTPVAAKL--GLP----------FLLVVRVFMGIG--------------------------------------------- 207 (512)
Q Consensus 185 ~~~~~~~~--~~~----------~l~~~~~l~G~~--------------------------------------------- 207 (512)
++.+.+.. +.. ..-..|..-|..
T Consensus 93 ll~fv~P~~~~~i~~~~~~c~~~~~~~~~~~~~v~l~~~~~s~~~~~~s~pa~~~~~~Eap~~~~~~~~s~~~~~~d~~~ 172 (618)
T KOG3762|consen 93 LLVFVPPVDKNRIHEVFFCCDSSGLDSGRALRGVTLPVNINSCQEGASSRPAKCALEVEAPGFRNPIEESDFLTFEDEHA 172 (618)
T ss_pred heeeccCcccCcccccccccccccCchhhhccCccceechhhhhccccCCcHHHHHhccCccccCCcccchhhhhhhhhh
Confidence 55444310 000 001111111111
Q ss_pred -----------------------------------------------------hhchhhHHHHHHhcc-------cCCcc
Q 010343 208 -----------------------------------------------------EGVAMPAMNNILSKW-------VPVAE 227 (512)
Q Consensus 208 -----------------------------------------------------~~~~~~~~~~~~~~~-------~~~~~ 227 (512)
.........+++-+. +...+
T Consensus 173 ~i~ps~~~~v~s~~~~~~~~~~s~~~~~~~~rq~~v~~~~v~Ll~~~~~~ef~s~c~~~~~d~~~~~~~~e~~~~~~~~~ 252 (618)
T KOG3762|consen 173 AIAPSVITFVRSYDQALLEPVVSPLFSHRVYRQPEVQKAHVCLLTPIKIGEFFSNCAGTLADAAVFDLLLEAAAITGSLR 252 (618)
T ss_pred ccchhhhcccccCCHHhhccccCcccccchhcccccccceeEEeecccccccccCccccchHHHHHHHHhhhhhhhceee
Confidence 000011111111111 11122
Q ss_pred hhHHHHHHHHhhhhHHHHHHhHHHHHhc----------ccCchhHHHHHHHHHHHHHHHHhh--hccC-CCCCCCCCChh
Q 010343 228 RSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVFYSFGSLGTVWFTVWLS--KAHS-SPAEDPQLRPA 294 (512)
Q Consensus 228 r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 294 (512)
.+...++-..+..++. ++--..--+.+ ...|+..+.+.+.++.-+.....- +.-+ .+....+....
T Consensus 253 ~~~~~gW~l~~~~~~~-i~~d~~~sf~d~~c~~~~~~e~~n~~~~~~v~gv~~~~A~~~~~~~~~~~~~~~~~v~~~~~~ 331 (618)
T KOG3762|consen 253 YGASLGWGLAMFLCGQ-IALDYTYSFSDAPCKGDLGDEEKNYYLCQRVCGVLGTGATGSAADCFFKYDMGHRLVVDSYGA 331 (618)
T ss_pred ccchhHHHHHHHHHhh-hhhhhhhhhhcCCCccccchhhhchhhhhhHHHHHHHHHHHHhcCcEEEeccccccccccccH
Confidence 3445566666666665 33222222222 345777888877666655444332 2222 12111111111
Q ss_pred hhHhh-----h---hccccC--CCCCC---chHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhh
Q 010343 295 EKKLI-----V---SSCASK--EPVKT---IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL 361 (512)
Q Consensus 295 ~~~~~-----~---~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~ 361 (512)
+.... . ...+.. ++... .....++.++....+++...+.+++...+.+++=-+++| ++..+...|.
T Consensus 332 ~v~~~l~~~~~~~f~~s~~~~~~~~~~~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv 410 (618)
T KOG3762|consen 332 EVESMLALAASIAFPSSKLGQGEPHSSSVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGV 410 (618)
T ss_pred HHHHHHHHHHHhhccccccCCCCchHHHHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeee
Confidence 11000 0 000000 11011 112245677887778888888888888888888778888 6777778888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhh
Q 010343 362 FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLY 441 (512)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
..+..-.+.++.-++.+++.+|+|+.+++ ..++.+...-++.+....++|..+-+=++-+...+.......
T Consensus 411 ~~a~~~~gEI~~~ffs~klI~kiGHv~v~---------~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLIEKIGHVNVM---------YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred hhhhhccchHHHHHHHHHHHHHhccccee---------eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999988543 345555556666666667777777666665555555556666
Q ss_pred hhhhhh-cCcchhhHHHHHHHHH-hHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 442 SNHQDI-APRYSGVLLGLSNTAG-VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 442 ~~~~~~-~~~~~g~~~g~~~~~~-~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
++++.+ ||+.++++.|+..... .+|-.+|.+++|.+.+.+|-+..|.+.++.+++.+++...+.+
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666554 5688999999988554 7899999999999999999999999998888887776655543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-11 Score=118.32 Aligned_cols=179 Identities=14% Similarity=0.090 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhh-hhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCCh--HHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNM-SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK--AVLGFGVVW 178 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~ 178 (512)
+.+.+...++++++..-+...+ ........+++|++..+...+..+..+..+++.+++|++.||+|.| +++.++.++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL 358 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3445555556655544444444 3444555668999999999999999999999999999999999999 888888777
Q ss_pred HHHHHHHHHH--------HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHH
Q 010343 179 WSIATALTPV--------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS 250 (512)
Q Consensus 179 ~~~~~~~~~~--------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 250 (512)
+.+..+...+ .. +.+.+++..++.|++.|..++...++.++..|+++.+..+|++....-....+||++.
T Consensus 359 ~~~i~~~g~~G~~~~~~g~~--~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSFFGLK--SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHHHHHhhhcccCcc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7554444333 33 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccC-chhHHHHHHHHHHHHHHHHhhhcc
Q 010343 251 PFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAH 282 (512)
Q Consensus 251 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~ 282 (512)
+.+.+..| -|+.+....++.++.+++......
T Consensus 437 g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 437 GLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999887 888888888777777666655443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=120.44 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 185 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 185 (512)
...+++..++............|.+.+++|.++.+.++..+...++..++.++.|++.||+|+|+.+....+......++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLV 331 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 33444444444555555566677888899999999999999999999999999999999999995544443333333333
Q ss_pred HHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHH
Q 010343 186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253 (512)
Q Consensus 186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 253 (512)
..... +.+.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.++|.+
T Consensus 332 ~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 332 GSTLF--SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHhh--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 33244 6777788889999999999999999999999999999999999999999999999999875
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-11 Score=121.01 Aligned_cols=175 Identities=16% Similarity=0.196 Sum_probs=118.1
Q ss_pred hcCh-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhHH
Q 010343 318 LSKP-PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVR 395 (512)
Q Consensus 318 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~ 395 (512)
+++| .++..++..++..+.++.+..+++.|+++.+|++..+.+.+............+++|+++|| +|+|+.
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~------ 90 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV------ 90 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH------
Confidence 4555 58888888888889999999999999988899999998888877766666666789999999 598842
Q ss_pred HHHHHHHhHHHHHHHHhhccCChhHHHHHH-HHHHhhhhhhhhchhhhhhhhhcC-c--chhhHHHHHHHHHhHHHHHHH
Q 010343 396 KIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-R--YSGVLLGLSNTAGVLAGVFGT 471 (512)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~~g~~ig~ 471 (512)
......+...+..+.... .+........ .+.+.+ .+...+....+..+..| + +++.++++++...++|..++|
T Consensus 91 -~~~g~~~~~ig~~l~~~~-~~~~~~l~~~~~l~gig-~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp 167 (500)
T PRK09584 91 -IMLGAIVLAIGYALVAWS-GHDAGIVYMGMATIAVG-NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM 167 (500)
T ss_pred -HHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHh-hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence 222222222122222221 1222222222 333333 33333444444444433 2 355688899999999999999
Q ss_pred HhhhheeecCcchhHHHHHHHHHHHHHHHH
Q 010343 472 AATGYILQHGSWDDVFKVSVGLYLVGTAVW 501 (512)
Q Consensus 472 ~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 501 (512)
.+.|++.++.||+..|.+.++..+++.+.+
T Consensus 168 ~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 168 LATPWLAAKYGWSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998886666555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-11 Score=120.70 Aligned_cols=177 Identities=11% Similarity=0.136 Sum_probs=122.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhHHHHH
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKIM 398 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~ 398 (512)
.+.++.++...+.-.+.+++...+++.|+++.+|++..+.+++...+.....+..+++|+++|| +|+||...
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~------- 85 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV------- 85 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH-------
Confidence 4567777778888889999999999999999899999999999999888888888899999999 99995322
Q ss_pred HHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhh-hcCc--chhhHHHHHHHHHhHHHHHHHHhhh
Q 010343 399 QSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPR--YSGVLLGLSNTAGVLAGVFGTAATG 475 (512)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~g~~~g~~~~~~~~g~~ig~~l~g 475 (512)
....+...+...............+.....+.+.+ ...+....+..+ .+++ +|++++++++...++|..+||.++|
T Consensus 86 ~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g 164 (489)
T PRK10207 86 LGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP 164 (489)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 22222222222222211111112222333333333 333344444444 4444 4578999999999999999999999
Q ss_pred heeecCcchhHHHHHHHHHHHHHHHHHHh
Q 010343 476 YILQHGSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 476 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
++.++.||++.|++.++..+++.+.+...
T Consensus 165 ~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 165 VIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998766555555444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=121.04 Aligned_cols=151 Identities=18% Similarity=0.147 Sum_probs=108.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH-HHH
Q 010343 110 FSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTP 187 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~ 187 (512)
....++............|.+.++ +|.+..+.++....+.++..++.+++|+++||+|||+.+..+..+..+... ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 333344444455556667776654 899999999999999999999999999999999999988776554433221 111
Q ss_pred -HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhh-hHHHHHHhHHHHHhcccCch
Q 010343 188 -VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY-LGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 188 -~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~g~~ 260 (512)
.....++..+.+..++.|++.+...+....++.|.+|+++|+.++++...... +++.++|.+.+++.+..|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 11211333444445666777777777777889999999999999999655444 46788999999999988864
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-11 Score=121.55 Aligned_cols=175 Identities=14% Similarity=0.199 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 400 (512)
+.++.+.+..++.....+.+..++|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|+|+. .+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-------~~~~ 81 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI-------FFTA 81 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-------HHHH
Confidence 356777777788777888888999999887 89999999999999999999999999999999999843 2222
Q ss_pred HHhHHHHHHHHhhccCChhHHHH-HHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhhee
Q 010343 401 IGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL 478 (512)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~ 478 (512)
......+... ....++.+... ..++.+.+.+.. .+...... +..++++++++.|+.+....+|..++|.++|.+.
T Consensus 82 ~~~~~~~~~~--~~~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 82 IVLFTLGSLF--CALSGTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHHH--HHHhCCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1111111111 11223333333 334444444433 33444444 4445578999999999999999999999999999
Q ss_pred ecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 479 QHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
++.||++.|.+...+.+++.++.....+
T Consensus 159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 159 EYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999988777666665554433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-11 Score=117.63 Aligned_cols=162 Identities=12% Similarity=0.029 Sum_probs=113.9
Q ss_pred HHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc
Q 010343 335 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 414 (512)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (512)
..+..+...+|.+.+| +|++..+.|++.+.+.++..++++..|++.||+|||+. .. ..+...........
T Consensus 5 ~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-------~~--~~~~~~~~~~~~~~ 74 (368)
T TIGR00903 5 AIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-------LF--GSLATFAAAAGRLL 74 (368)
T ss_pred HHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-------HH--HHHHHHHHHHHHHH
Confidence 4455666777777666 89999999999999999999999999999999997732 11 11111111111111
Q ss_pred c-CChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 415 H-VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 415 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
. .+...+...-++.+.+.. ...+......+..++++|+++.++.+....+|..+++.+++++.++.||+..|.+.+++
T Consensus 75 ~~~~~~~l~~~R~l~G~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l 153 (368)
T TIGR00903 75 DPFNYEWLLACQLLAALGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAV 153 (368)
T ss_pred HhccHHHHHHHHHHHHhHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 1 233333333344444433 33444444556677789999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHhcCC
Q 010343 494 YLVGTAVWNLFSTG 507 (512)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (512)
.++..++.....++
T Consensus 154 ~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 154 AAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHHHHHHcCC
Confidence 77766655555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-11 Score=118.35 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 400 (512)
+.++.+.+..++...........+|.+.++ +|.+..+.++..+...++..+++++.|++.||+|+|+. . .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-------~--~ 72 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI-------L--L 72 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH-------H--H
Confidence 456677777788888888888888887766 89999999999999999999999999999999998842 2 2
Q ss_pred HHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhc-CcchhhHHHHHHHHHhHHHHHHHHhhhheee
Q 010343 401 IGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 479 (512)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~ 479 (512)
.+.+..++........++.+...+.-.+.+...+...+.......+.. ++++++++++......++..++|.+++++.+
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 222222232223333344444444433333333333334444444444 4679999999999999999999999999999
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 480 HGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 480 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
..||+..|.+.+++.++..+......+
T Consensus 153 ~~gwr~~f~~~~~~~~~~~~~~~~~lp 179 (382)
T PRK10091 153 EFSWRYTFLLIAVFNIAVLASIYFWVP 179 (382)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999988876666554444333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-11 Score=121.53 Aligned_cols=169 Identities=13% Similarity=0.021 Sum_probs=127.3
Q ss_pred hhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcCh--
Q 010343 117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL-- 194 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-- 194 (512)
..+........|.+.++.|.+....++......+...++.++.|+++||+|||++++.+.++.+++.+++......+.
T Consensus 284 ~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~ 363 (479)
T PRK10077 284 FVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG 363 (479)
T ss_pred HhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCccc
Confidence 333444455678888889998887888878888889999999999999999999999999998888877654421111
Q ss_pred HHHHHHHHHHhhhhhc-hhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh------cccCchhHHHHHH
Q 010343 195 PFLLVVRVFMGIGEGV-AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI------HRFGWPSVFYSFG 267 (512)
Q Consensus 195 ~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~~~g~~~~f~~~~ 267 (512)
.....+.++.+++.+. ..+....++.|.+|+++|++++|+......+|.++++.+.+.+. +.++|++.|++.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 443 (479)
T PRK10077 364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 443 (479)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHH
Confidence 1233344444444443 34678899999999999999999999999999998876665443 5788999999988
Q ss_pred HHHHHHHHHHhhhccCCC
Q 010343 268 SLGTVWFTVWLSKAHSSP 285 (512)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ 285 (512)
+++++..++.+.+.+|++
T Consensus 444 ~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 444 CMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHHhccccCC
Confidence 887777776666666543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=121.87 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcC--ChHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSI 181 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~ 181 (512)
+.++.+.+...+..++.......+|.+.++.|.+..+.+.+.++..+...++.+..|+++|+.. ++.+..++.++.++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 5667777777777888888888899999999999999999999999999999999999999988 44556677888888
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-ch
Q 010343 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WP 260 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~ 260 (512)
+.+.+++.. +++.++...++.|++.|........++.|..+.++...+.|+...+.+++..+||+++|++.+..| |.
T Consensus 378 ~~~~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 378 ARLFLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 888888888 899999999999999998888888899999999999999999999999999999999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 010343 261 SVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~ 281 (512)
..|+..++..++....++...
T Consensus 456 ~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 456 HAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eehhhcChHHHHHHHHHHHhH
Confidence 999999988888776666554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-11 Score=118.67 Aligned_cols=173 Identities=14% Similarity=0.043 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Q 010343 324 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF 403 (512)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 403 (512)
+......++...........+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+. ... +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-------~~~--~~ 77 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV-------LLL--GL 77 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-------HHH--HH
Confidence 334444444445556666677776655 89999999999999999999999999999999999842 222 22
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 404 LGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
+............++.+.......+.+...+...+....+..+ .++++|+++.|+.+....+|..++|.+++.+.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 78 FIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222222222223344444443333333333444444455544 455789999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcC
Q 010343 483 WDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
|+..+++.+++.++..++.....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999888777776665555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=119.00 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=117.2
Q ss_pred hhhhhhhhhhcccCCChhhHHHHHHHHHH-HHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHh----hcChHH
Q 010343 122 NMSIAILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA----KLGLPF 196 (512)
Q Consensus 122 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 196 (512)
......+.+.+|.|++++++|++.....+ ...++.++.|++.||+|+|+.+..+.++.++..+...... ..+...
T Consensus 226 ~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (390)
T TIGR02718 226 SGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV 305 (390)
T ss_pred HHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH
Confidence 33344566667789999999999988764 6667789999999999999998887766533333222111 012334
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHhcccCC-cchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHH
Q 010343 197 LLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT 275 (512)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 275 (512)
++...++.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..|++..|+..+++.++..+
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 306 AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 44555666777777778888887777766 78899999999999999999999999999999999999988777666544
Q ss_pred H
Q 010343 276 V 276 (512)
Q Consensus 276 ~ 276 (512)
+
T Consensus 386 ~ 386 (390)
T TIGR02718 386 L 386 (390)
T ss_pred H
Confidence 3
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-12 Score=127.30 Aligned_cols=175 Identities=10% Similarity=0.017 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHH------------HHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHH
Q 010343 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGL------------IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV 177 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 177 (512)
....+...+..+......|.+.++.|.+..+.+. ...+..++..++.++.++++||+|||++++++..
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~ 373 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Confidence 3333333333334444577777788876543221 2233445666788899999999999999988887
Q ss_pred HHHHHHHHHHHHhhc--ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc
Q 010343 178 WWSIATALTPVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH 255 (512)
Q Consensus 178 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 255 (512)
+.+++..+..+.... +...+....+...++.....+....+.+|.+|.+.|++++|+.+....+|.++++.+.+.+.+
T Consensus 374 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 374 ILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 777776655543210 111112111222222223456677788999999999999999999999999999999999887
Q ss_pred c----------cCchhHHHHHHHHHHHHHHHHhhhccCCC
Q 010343 256 R----------FGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285 (512)
Q Consensus 256 ~----------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 285 (512)
. .++...|++.+++.++..+.. ++.||++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~ 492 (502)
T TIGR00887 454 HGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETK 492 (502)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCC
Confidence 3 345667787777777665544 4445543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.8e-11 Score=111.40 Aligned_cols=163 Identities=9% Similarity=0.084 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc---ccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSA---EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW 178 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 178 (512)
+++.+++..+..|+............+.+.+ ++|+++.+.++..+.+..+..++.+..+++.||+|+|+.+.++..+
T Consensus 138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l 217 (310)
T TIGR01272 138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL 217 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3444555556666655556666666666554 3699999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
..++.++....+ +.. ....-++.|++.+..+|...+...+..|+ +.+++.++. ....+|+.++|++.|.+.|..|
T Consensus 218 ~~~~~~l~~~~~--~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g 292 (310)
T TIGR01272 218 AVLLSIGAALTH--GYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG 292 (310)
T ss_pred HHHHHHHHHHcC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc
Confidence 777765555544 333 23456688999999999999999998854 456667775 5677999999999999999999
Q ss_pred chhHHHHHHHH
Q 010343 259 WPSVFYSFGSL 269 (512)
Q Consensus 259 ~~~~f~~~~~~ 269 (512)
.+..|++..+.
T Consensus 293 ~~~a~~v~~~~ 303 (310)
T TIGR01272 293 IQLAFALPVPC 303 (310)
T ss_pred chHHHHHHHHH
Confidence 99888854443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-11 Score=118.89 Aligned_cols=143 Identities=8% Similarity=0.055 Sum_probs=121.3
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhh
Q 010343 134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213 (512)
Q Consensus 134 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 213 (512)
.+.+..+.|.+.++..+...++.+..|++.||+|+|+.+.++.++.++...+..+.+ +.+.+++.+++.|++......
T Consensus 249 ~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~ 326 (396)
T TIGR00882 249 PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--TALEVVILKMLHAFEVPFLLV 326 (396)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999999999999999999999988888887777777 788888889999998776666
Q ss_pred HHHHHHhcccCCcchhHHHHH-HHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHh
Q 010343 214 AMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 214 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 278 (512)
....+..+..+++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++..+...
T Consensus 327 ~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 327 GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 667777887877777776666 67889999999999999999999999999998888877665543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=118.76 Aligned_cols=172 Identities=12% Similarity=0.005 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhH
Q 010343 325 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 404 (512)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 404 (512)
.+.+..++...........+|.|..+ .+.+..+.+++.+...++..++.++.|++.||+|+|+... ....+.
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~-------~~~~~~ 74 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMI-------GADLIR 74 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHH-------HHHHHH
Confidence 34566667777777788888988887 6999999999999999999999999999999999995322 211111
Q ss_pred HHHHHHHhh-c--cCChhHHHHHHHHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 405 GPAFFLTQL-S--HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 405 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
..+...... . ...+.+...+...+.+...+...+....+..+. ++++|++++|+.+....+|..++|.+++.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 154 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT 154 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1 111334444443343344444455555555554 457899999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHh
Q 010343 481 GSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 481 ~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
.||+..|++.++..+++.++....
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 155 LGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988877766665554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-11 Score=119.93 Aligned_cols=174 Identities=17% Similarity=0.129 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 010343 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402 (512)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 402 (512)
+..+++..++...-...+...+|.+..+ +|.+..+.+++.+.+.++..++.+..|+++||+|+|+. . ..+
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~-------l--~~~ 77 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL-------L--MLG 77 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------H--HHH
Confidence 3455555666666667777888888776 89999999999999999999999999999999999942 2 222
Q ss_pred hHHHHHHHHhhccCChhHHHHHH-HHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 403 FLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
.+............++.+..++. .+.+.+.+...+.......... ++++|++++|+......+|..+||.++|++.++
T Consensus 78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22222222222233444444443 4444444433333333344554 457899999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 481 GSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 481 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
.||++.|++...+.++..++.....+
T Consensus 158 ~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 158 FYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999988777776665555444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=123.06 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=114.9
Q ss_pred hhhhhhhhhhhhhhhc-ccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH---HHHHHHHHHhhc
Q 010343 117 NMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALTPVAAKL 192 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~~~ 192 (512)
...........|.+.+ ..|.++.+.++...++.++..++.++.|++.||+++++....+..... ++.+.+...+..
T Consensus 264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T TIGR00712 264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAG 343 (438)
T ss_pred HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333444456666555 479999999999999999999999999999999965432222322221 112222221111
Q ss_pred ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhH-HHHHHhHHHHHhcccCchhHHHHHHHHHH
Q 010343 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLG-SVTGLAFSPFLIHRFGWPSVFYSFGSLGT 271 (512)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~l~~~~g~~~~f~~~~~~~~ 271 (512)
+.+...+..++.|++.............|.+|+++|++++|+.+....+| ..++|.+.|.+.++.||...|++..++.+
T Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~ 423 (438)
T TIGR00712 344 NPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 423 (438)
T ss_pred chHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHH
Confidence 33333344455555433222233356779999999999999999888876 57899999999999999999998888877
Q ss_pred HHHHHHhhhccCCC
Q 010343 272 VWFTVWLSKAHSSP 285 (512)
Q Consensus 272 ~~~~~~~~~~~~~~ 285 (512)
+..+..+...++++
T Consensus 424 ~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 424 LAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHhhcc
Confidence 77777777766543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=119.90 Aligned_cols=173 Identities=16% Similarity=0.174 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Q 010343 324 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF 403 (512)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 403 (512)
..+.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+. . ..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~--~~~~ 74 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL-------F--LIST 74 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH-------H--HHHH
Confidence 344555566666666677778877766 89999999999999999999999999999999999842 2 2222
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 404 LGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
+...+........++........++.+...+...+....+. +..++++|+++.++......+|..++|.++|++.++.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 75 FAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 22222222233334444444443333333333444444444 44456899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcC
Q 010343 483 WDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
|++.|++.+.+.++..++..+..+
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcC
Confidence 999999888777666655544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-08 Score=95.13 Aligned_cols=276 Identities=9% Similarity=0.017 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCC-----ChhhHHHHHHHHHHHHHHH-HhhhhHhHhhcCChHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW-----NPATVGLIQSSFFWGYLLT-QIAGGIWADTVGGKAVLGFGV 176 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~ 176 (512)
++.++...+..|+..+..+.. -.+.|.+.. +.+.+.++-+...+...+. .++.+++++|++|++++.+..
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 344555555555555444433 334555544 4578899988887777766 899999999999999988877
Q ss_pred HHHHHHHHHHHHHhh----c-------------------------ChHHHHHHHHHHhhhhhchhh-HHHHHHhcccCCc
Q 010343 177 VWWSIATALTPVAAK----L-------------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPVA 226 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~----~-------------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~ 226 (512)
..+....+++++.-. . +.|...+..+...+....... ...+++.|.++.+
T Consensus 82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~ 161 (472)
T TIGR00769 82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID 161 (472)
T ss_pred HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 777766666555410 0 123333444555555555555 7889999999999
Q ss_pred chhHHHHHHHHhhhhHHHHHHhHHHHHhcc-------c-Cch----hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChh
Q 010343 227 ERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------F-GWP----SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294 (512)
Q Consensus 227 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~-g~~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (512)
|-.|.+++...+.++|.++++.+..++.+. . .|. ..+.+.+++..+...+...+.+.. .+++...+.
T Consensus 162 qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 240 (472)
T TIGR00769 162 EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV-LTDPRSYNP 240 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccccch
Confidence 999999999999999999999998887631 1 231 233333333333333333332222 111111111
Q ss_pred hhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccc----hhhhhhhhHHHH
Q 010343 295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTM 370 (512)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~----~g~~~~~~~~~~ 370 (512)
++ .+..++.+.....+++.++++|.++.+.+...+++...+.+....-..+.+.+ -++.+ .|.+....++..
T Consensus 241 ~~---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~t 316 (472)
T TIGR00769 241 AL---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVS 316 (472)
T ss_pred hh---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
Confidence 10 00011111122457788999999999888888887777777665555665543 23322 344445556666
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010343 371 AFSANLGGWIADTLVSK 387 (512)
Q Consensus 371 ~~~~~~~g~l~dr~~~~ 387 (512)
++..++.+++.+|+|-+
T Consensus 317 l~~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 317 VTMMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 66677778999999876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=113.21 Aligned_cols=148 Identities=12% Similarity=0.049 Sum_probs=117.7
Q ss_pred hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 010343 127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGI 206 (512)
Q Consensus 127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 206 (512)
.|.+.+++|+++.+.+++...+.++..++.++.+++.||.+++..+....+......++....+ +.+.+.+..++.|+
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~G~ 317 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGS--DKIVATGVAIIWGL 317 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHH
Confidence 4667788999999999999999999999999999999996544334333333333344444555 67778888999999
Q ss_pred hhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHH
Q 010343 207 GEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 277 (512)
+.+...+...+++.+..| +++++..+......++|..+|+.++|.+.+..|++..++..+++.++..+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence 999999999989998885 5677888888889999999999999999999999998888776665554433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=119.37 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCC-hHHHH-HHH-HHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLG-FGV-VWWSI 181 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~-~~~-~~~~~ 181 (512)
++.+.+..++............|.+ .+++|.++.+.+++.+...++..++.++.|++.||..+ |+... ... ....+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 3344444444444444555555654 45689999999999999999999999999999998643 33222 111 11222
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchh
Q 010343 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 261 (512)
+.......+..+.+..++..++.|+......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+.+||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 298 SLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 22222221111445566667777776666666677889999999999999999999999999999999999999999987
Q ss_pred HH
Q 010343 262 VF 263 (512)
Q Consensus 262 ~f 263 (512)
.|
T Consensus 378 ~f 379 (379)
T TIGR00881 378 AF 379 (379)
T ss_pred cC
Confidence 64
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=113.35 Aligned_cols=179 Identities=17% Similarity=0.075 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
+..+.+++.|+..+.+...++..+|. +.+++|.++.+.|...+.+.+...+..+.+|+++||+|.+|++......++++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 34566677777777777777777777 66789999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHhh-----cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhccc
Q 010343 183 TALTPVAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF 257 (512)
Q Consensus 183 ~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 257 (512)
..+..+... .+....++..+..++..+.-......+++.++ +++-|.+.|+..+.+++|+..-|...+...+..
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence 877766531 14455555555555555555667778888888 558899999999999999999999999999888
Q ss_pred C-chhHHHHHHHHHHHHHHHHhhhccC
Q 010343 258 G-WPSVFYSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 258 g-~~~~f~~~~~~~~~~~~~~~~~~~~ 283 (512)
| +...|++...+.+++.++.+....+
T Consensus 377 g~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 377 GSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 8899999888888887766655443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=115.37 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhH
Q 010343 325 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 404 (512)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 404 (512)
...+..++.+.-........| .+++++|++..+.|++.+.+.++..+++++.|++.||+|+|+. +..+++
T Consensus 12 ~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~---------~~~~~~ 81 (412)
T TIGR02332 12 FLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW---------IAGIMV 81 (412)
T ss_pred HHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH---------HHHHHH
Confidence 333333443444444455555 5666699999999999999999999999999999999999942 222222
Q ss_pred HHHHHHHhhccCChhHHH-HHHHHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhHHHHHHHHhhhheee---
Q 010343 405 GPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ--- 479 (512)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~--- 479 (512)
...+........++.+.+ ..-++.+.+.+.. .+....+..+. ++++|+++.|+++....+|..+++.+++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 222222222223334333 3334444444433 44444445554 55789999999999999999999999998864
Q ss_pred ---cCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 480 ---HGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 480 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
..||+..|.+.++..++..++..++.+
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 369999999988777665555544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-10 Score=100.26 Aligned_cols=363 Identities=13% Similarity=0.087 Sum_probs=202.2
Q ss_pred HHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 010343 113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 192 (512)
+++...+.....|.+-.+.+++|+...++|.+........++...+.|.++||-|||+..+.-.+.+.++++ .-.++
T Consensus 46 yslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSp-- 122 (454)
T KOG4332|consen 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSP-- 122 (454)
T ss_pred HHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCC--
Confidence 444455666777888888899999999999999988889999999999999999999977655554444432 22344
Q ss_pred ChHHHHHHHHHHhhhhhchhhHHHHHHh-cccCCcchhH-------HHHHHH-HhhhhHHHHHHhHHHHHhccc--Cchh
Q 010343 193 GLPFLLVVRVFMGIGEGVAMPAMNNILS-KWVPVAERSR-------SLALVY-SGMYLGSVTGLAFSPFLIHRF--GWPS 261 (512)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~-~~~~~~~r~~-------~~~~~~-~~~~~g~~~g~~~~~~l~~~~--g~~~ 261 (512)
.+-.++++|++.|+..+..+.+..++.. |.. ++|+. .++-.. .++.+-.+++.+.+..+.+.+ |.-.
T Consensus 123 qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVA 200 (454)
T KOG4332|consen 123 QYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVA 200 (454)
T ss_pred ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCC
Confidence 6788999999999999999888877654 443 23332 222222 344455566666666666654 4556
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHH
Q 010343 262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341 (512)
Q Consensus 262 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (512)
+|-..+.+..+...+.+.-..++-.+..+.+...... +...+.+..++++..+.....+.-...+.+.
T Consensus 201 PFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf------------~gaa~aiaSD~ki~LLG~iqsLFE~smytFV 268 (454)
T KOG4332|consen 201 PFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQF------------KGAARAIASDEKIALLGAIQSLFEGSMYTFV 268 (454)
T ss_pred chHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHh------------hHhHHHHhcchHHHHHHHHHHHHhhhhheee
Confidence 6766555555554444443333322211111111110 1233445667777666555555444444433
Q ss_pred HhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc-----cC
Q 010343 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS-----HV 416 (512)
Q Consensus 342 ~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 416 (512)
....+-+.. +-...--|.+++.+.++.++|+-+..++..|-..+--.. ..+.+......+.+.... ..
T Consensus 269 FLWTPaLsp--n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~y-----mqivf~vs~a~l~Lpilt~~vsP~k 341 (454)
T KOG4332|consen 269 FLWTPALSP--NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESY-----MQIVFLVSIAALLLPILTSSVSPSK 341 (454)
T ss_pred eeecccCCC--CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchH-----HHHHHHHHHHHHHHHHHHhccCCCc
Confidence 333332221 111223478899999999999888888777654442111 111111111111111111 11
Q ss_pred ChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec--CcchhHHHHHHHH
Q 010343 417 DSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH--GSWDDVFKVSVGL 493 (512)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~--~g~~~~~~~~~~~ 493 (512)
..+..-.+.++..-...+...|.+.-+- +.+|++.|++.+-++..--++-..++-.-- =.+. .+-+..|-++...
T Consensus 342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynl--h~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL--HVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec--ccccCccccchhhhhhHHH
Confidence 2222333333333333344444444444 555557888887776654444333221110 0111 3455777777777
Q ss_pred HHHHHHHH
Q 010343 494 YLVGTAVW 501 (512)
Q Consensus 494 ~~~~~~~~ 501 (512)
..++.+..
T Consensus 420 ~~~a~i~~ 427 (454)
T KOG4332|consen 420 LFVASILQ 427 (454)
T ss_pred HHHHHHHH
Confidence 76665443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-10 Score=101.69 Aligned_cols=367 Identities=11% Similarity=-0.030 Sum_probs=217.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHh-----hcCChHHHHH-
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLGF- 174 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~- 174 (512)
...+.+..+.+.+.+++.-.+... .+|.+.+.-|.|.++.+....++. -....+++.++.| |+||||..++
T Consensus 28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeee
Confidence 344567777788999999988888 899999988999888877655442 2345688999999 9999986543
Q ss_pred HHHHHHHHHHHHHHHhh---------cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHH
Q 010343 175 GVVWWSIATALTPVAAK---------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT 245 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 245 (512)
+..+.+..+.++....+ .+...+....++.-+..+....+...+.-....+++.|-+......+...|..+
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 33333333333332210 123334445567777778888899999999998999888887777777777777
Q ss_pred HHhHHHHHhc-------ccCch---------hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCC
Q 010343 246 GLAFSPFLIH-------RFGWP---------SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPV 309 (512)
Q Consensus 246 g~~~~~~l~~-------~~g~~---------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (512)
+..+.-.+.+ ..+|. ..+++.+.+.++...+..+..++++.+..++.+.....
T Consensus 185 ~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~----------- 253 (510)
T KOG3574|consen 185 GNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHE----------- 253 (510)
T ss_pred hcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHH-----------
Confidence 7655433322 11222 23445566666665555555554443311111100000
Q ss_pred CCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 010343 310 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL 389 (512)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 389 (512)
.-.-++++++-|.+..++......-.++.+-....+.-+.| .|++.++.+++.....-.+++.....|++......-..
T Consensus 254 ~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~ 332 (510)
T KOG3574|consen 254 SYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNV 332 (510)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchH
Confidence 01135667888888888888888888888888888888888 69999998887755555555555555544431111111
Q ss_pred chhhHHHHHHHHHhHHHHHHHHhhccCC----hh----HHHHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHH
Q 010343 390 SVTTVRKIMQSIGFLGPAFFLTQLSHVD----SP----AMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSN 460 (512)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~ 460 (512)
...+.... +..+....+.....-.... .+ .+.+....+...+.........+...+ .+|...|+.+.+.|
T Consensus 333 ~lka~~~R-~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLN 411 (510)
T KOG3574|consen 333 FLKAVPYR-LGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLN 411 (510)
T ss_pred HHHhhhHH-HHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHH
Confidence 11111101 1111111111111111111 11 111111222222333333333344434 45678999999999
Q ss_pred HHHhHHHHHHHHhhhheeecCcc
Q 010343 461 TAGVLAGVFGTAATGYILQHGSW 483 (512)
Q Consensus 461 ~~~~~g~~ig~~l~g~l~~~~g~ 483 (512)
+..++|+---..+.+++.|..++
T Consensus 412 TLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 412 TLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred HHHHhcCCcHHHHHHHhcccCce
Confidence 99999999888899999887544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=112.07 Aligned_cols=175 Identities=17% Similarity=0.217 Sum_probs=137.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccC-CChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPMSAEFN-WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
...+..++.+.....+..+.+.+.++.| .+....|.+.++..++-++.-...+++..|+|.|+++.++.+..++=..++
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667777777788888888 778888988888888999999999999999999999999999999998888
Q ss_pred HHHhhcChHHHHH----HHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHh-hhhHHHHHHhHHHHHhcccCchh
Q 010343 187 PVAAKLGLPFLLV----VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSPFLIHRFGWPS 261 (512)
Q Consensus 187 ~~~~~~~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~g~~~ 261 (512)
++..+ +.+...+ ...++|+..+..+.+...++.+..|++.|+++.+++... .++|..+|..++|++.+++|-+.
T Consensus 291 a~~~~-~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 291 AYFSD-PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred HHhcC-CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence 88731 4443333 345799999999999999999999999999999998875 68999999999999999887554
Q ss_pred ------HHHHHHHHHHHHHHHHhhhccC
Q 010343 262 ------VFYSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 262 ------~f~~~~~~~~~~~~~~~~~~~~ 283 (512)
.+.+.+++.++..++...+.++
T Consensus 370 ~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 370 MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4444555555555555444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=113.87 Aligned_cols=168 Identities=16% Similarity=0.123 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 010343 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402 (512)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 402 (512)
++..++..++.......+..+.|.++++++|++..+.+++.+...++..++.++.|++.||+|+|+.. . .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-------~--~~ 73 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT-------T--LS 73 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH-------H--HH
Confidence 45566666777777788888889877777999999999999999999999999999999999998432 2 22
Q ss_pred hHHHHHHHHhhccCC-hhHHHH-HHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheee-
Q 010343 403 FLGPAFFLTQLSHVD-SPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ- 479 (512)
Q Consensus 403 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~- 479 (512)
.+...+........+ +.+... ..++.+.+ .....+......+..++++|+++.++.....++|..+++.+.+.+.+
T Consensus 74 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 74 LLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222222222222223 333333 33333333 33333333333344456789999999998888888888887776654
Q ss_pred ---------cCcchhHH-HHHHHHHHHHHHH
Q 010343 480 ---------HGSWDDVF-KVSVGLYLVGTAV 500 (512)
Q Consensus 480 ---------~~g~~~~~-~~~~~~~~~~~~~ 500 (512)
+.+|++.+ +..+++..+..++
T Consensus 153 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 183 (366)
T TIGR00886 153 LIFGAGLPAHLAWGWAFVIVPAGILLLPALL 183 (366)
T ss_pred HHhcccccccccccchhHHHHHHHHHHHHHH
Confidence 24788888 4434444333333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-10 Score=113.46 Aligned_cols=175 Identities=13% Similarity=0.049 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 400 (512)
|-+....+..+....+.......+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|+|+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-------l~-- 72 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV-------AI-- 72 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH-------HH--
Confidence 334445555555666666667778887766 79999999999999999999999999999999999842 22
Q ss_pred HHhHHHHHHHHhhccCChhHH-HHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhhee
Q 010343 401 IGFLGPAFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL 478 (512)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~ 478 (512)
.+.+...+........++.+. ....++.+.+.+... +...... +..++++|+++.++.+....++..++|.+++.+.
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 73 PGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCY-VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222333333 333333343333333 3334444 4455689999999999999999999999999998
Q ss_pred ecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 479 QHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
+..||+..+++.+++.++..++.....+
T Consensus 152 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 152 LKFPWQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred hCcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8899999999888777766655444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-11 Score=119.09 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=116.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP 187 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 187 (512)
..+..++............+.+.++ ++ ++.+.+++.++..++.+++.++++++.||+|+|+.+..+.++.+++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 227 LCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443344444443 44 667788888888999999999999999999999999999888888877766
Q ss_pred HHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccC-------CcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
+.++ +.+.+++..++.|++.+...+...++++|..+ ++++|..+|+.+....+|..+++.+.|.+.+..||.
T Consensus 306 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 306 FAGS-NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred Hcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6532 56677778888999999889999999998865 456799999999999999999999999999877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=109.90 Aligned_cols=371 Identities=15% Similarity=0.076 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh----cCChHHHH-HHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLG-FGVVW 178 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~-~~~~~ 178 (512)
+.++.+....+-..+++..-..+++++.+++|++....+.+.....+...+.+++.|..+|| |||||.++ .+...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 34444445555556666666677888999999999999999999999999999999999995 88888765 45566
Q ss_pred HHHHHHHHHHHhhc---------------ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhH-HHHHHHHhhhhH
Q 010343 179 WSIATALTPVAAKL---------------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSR-SLALVYSGMYLG 242 (512)
Q Consensus 179 ~~~~~~~~~~~~~~---------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g 242 (512)
.+++.++++++.+. ....+++..-+.-+.......++-+++.|...++++.+ +++.+..+..+|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 66777777766521 11234445555566777888899999999998877777 999999999999
Q ss_pred HHHHHhHHHHHhcccCchh--HHHHHHHHHHHHHHHHh-------hhccC------CCCCCCCCChh-hhHhhhhccccC
Q 010343 243 SVTGLAFSPFLIHRFGWPS--VFYSFGSLGTVWFTVWL-------SKAHS------SPAEDPQLRPA-EKKLIVSSCASK 306 (512)
Q Consensus 243 ~~~g~~~~~~l~~~~g~~~--~f~~~~~~~~~~~~~~~-------~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~ 306 (512)
+.+|..+++++ +|+- .|...-.+.+.+..+-. +.... .+++++...+. +.+ ....+
T Consensus 192 nvLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~----~~~~~ 263 (498)
T KOG0637|consen 192 NVLGYALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTAR----SKSSK 263 (498)
T ss_pred ceeeeeccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCccccc----ccccC
Confidence 99998888743 4332 12111111111111100 00000 00011000000 000 00000
Q ss_pred CCCCCchHHHh-hcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhcCCccc----------------hhhhhhhhHH
Q 010343 307 EPVKTIPWGLI-LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-VLHFNLTE----------------SGLFCVLPWL 368 (512)
Q Consensus 307 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~----------------~g~~~~~~~~ 368 (512)
.+...+.+..+ ...|.++.+++...+...++..+.-|...++-+ .++-++.. -.+=+.++.+
T Consensus 264 ~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~ 343 (498)
T KOG0637|consen 264 LPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSI 343 (498)
T ss_pred cchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHH
Confidence 00000111112 235678888999999888888888777777643 34433321 2234556667
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc------------cCChhHHHHHHHHHHhhhhhhh
Q 010343 369 TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS------------HVDSPAMAVLCMACSQGTDAFS 436 (512)
Q Consensus 369 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
...+.+....++.+|+|.|+.++.+.....+..++.+......... ....++.++..+-.-..-....
T Consensus 344 ~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t 423 (498)
T KOG0637|consen 344 VLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAIT 423 (498)
T ss_pred HHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccc
Confidence 7778888889999999966655543322222222222111000000 0000111111111111111111
Q ss_pred hchhhhhhh-hhcC--cchhhHHHHHHHHHhHHHHHHHHhhhheeecCc
Q 010343 437 QSGLYSNHQ-DIAP--RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 482 (512)
Q Consensus 437 ~~~~~~~~~-~~~~--~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g 482 (512)
......... +..+ .-+|...|+.|....+..++.....|.+.+..|
T Consensus 424 ~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 424 FSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred cccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 111112111 1111 235788888888888999998888898888744
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=110.12 Aligned_cols=162 Identities=10% Similarity=0.062 Sum_probs=137.4
Q ss_pred hhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 010343 123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV 202 (512)
Q Consensus 123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (512)
+..+...+.++-+.+....|.+.++..+.-++...+..++.+|+|.|+.++++..++++=..++++++ +.+.+.+.+.
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~~~i~~~kl 320 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NPWVISLIKL 320 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHH
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Confidence 33334444455556677899999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhhhhhchhhHHHHHHhcccCCcchhHHHHHH-HHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhc
Q 010343 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALV-YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
+.|+-.+....+...++.+.+|++-.++...+. +...++|..+.+.++|.+.|+.|.+.+|++.+.+.++..++..+..
T Consensus 321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence 999999999999999999999988888888884 7888999999999999999999999999999998888777777776
Q ss_pred cCCCC
Q 010343 282 HSSPA 286 (512)
Q Consensus 282 ~~~~~ 286 (512)
+++++
T Consensus 401 ~~~~~ 405 (412)
T PF01306_consen 401 KKDKK 405 (412)
T ss_dssp --SSS
T ss_pred cCCCc
Confidence 65544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=113.66 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhHHH--HHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH
Q 010343 334 NWGTFILLTWMPTY--YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411 (512)
Q Consensus 334 ~~~~~~~~~~~~~~--l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (512)
...+.....+.|.+ +++++|.+..+.+++.+...++..++.++.|++.||+|+|+.. . .+.....+...
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~-------~--~~~~~~~~~~~ 86 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL-------L--AGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH-------H--HHHHHHHHHHH
Confidence 33334444444433 4455899999999999999999999999999999999999432 2 22222222222
Q ss_pred hhccCChhHHHHH-HHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHH
Q 010343 412 QLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKV 489 (512)
Q Consensus 412 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~ 489 (512)
.....++.+...+ .++.+.+..... +...... +..+++++++..+..+....++..++|.++|++.++.||+..|++
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 87 GMLWVESAAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 2222233333333 333333333222 2233333 445556788889998888999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcC
Q 010343 490 SVGLYLVGTAVWNLFST 506 (512)
Q Consensus 490 ~~~~~~~~~~~~~~~~~ 506 (512)
.+++.++..++.....+
T Consensus 166 ~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 166 LFAITLLLILPTLRLKP 182 (401)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 88777776665554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=115.00 Aligned_cols=159 Identities=11% Similarity=0.007 Sum_probs=121.2
Q ss_pred hhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHh---hcChHHHH
Q 010343 123 MSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA---KLGLPFLL 198 (512)
Q Consensus 123 ~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 198 (512)
+....|.+ .+++|.++.+.++......++..++.++.|++.||+++|+.+.++.++..++.++..+.+ ..+.+.++
T Consensus 234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 313 (406)
T PRK15402 234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT 313 (406)
T ss_pred HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence 33344554 567899999999998888888999999999999999999999988887777776665532 11456677
Q ss_pred HHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHh
Q 010343 199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 278 (512)
+..++.|++.+...+..+...... +++++++..+..+....+|..+|+.+++.+.+..++....+..++..++...+..
T Consensus 314 ~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK15402 314 AGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVR 392 (406)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHH
Confidence 888899999888777766665444 3589999999999999999999999999999888876655555545544444433
Q ss_pred hhcc
Q 010343 279 SKAH 282 (512)
Q Consensus 279 ~~~~ 282 (512)
...+
T Consensus 393 ~~~~ 396 (406)
T PRK15402 393 IFLK 396 (406)
T ss_pred HHhc
Confidence 3333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-10 Score=115.42 Aligned_cols=160 Identities=15% Similarity=0.054 Sum_probs=101.6
Q ss_pred HHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc
Q 010343 335 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 414 (512)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (512)
........+.|.+.+ .+|++..+.+++.+...++..++.++.|++.||+|+|+. . ..+.+..++......
T Consensus 50 ~~~~~~~~~~~~l~~-~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~-------~--~~~~~~~~~~~~~~~ 119 (476)
T PLN00028 50 VSTFAAAPLLPIIRD-NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG-------S--AFLLMLTAPAVFCMS 119 (476)
T ss_pred HHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-------H--HHHHHHHHHHHHHHH
Confidence 334444455555554 489999999999999999999999999999999999832 2 222222222222222
Q ss_pred cCChhHHH-HHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheee---------cCcch
Q 010343 415 HVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ---------HGSWD 484 (512)
Q Consensus 415 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~---------~~g~~ 484 (512)
..++.... +..++.+.+... ..+......+..++++||++.|+.+...++|..+++.+.+.+.+ ..||+
T Consensus 120 ~~~s~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr 198 (476)
T PLN00028 120 LVSSATGFIAVRFFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR 198 (476)
T ss_pred HhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence 22333333 333333433332 22332223344556789999999988888888887766655432 25899
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 010343 485 DVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~ 505 (512)
..|++.+++.++..++..++.
T Consensus 199 ~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 199 IAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999998888777666555544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-10 Score=113.95 Aligned_cols=161 Identities=11% Similarity=0.014 Sum_probs=104.0
Q ss_pred hhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH-Hh-hcCh
Q 010343 118 MDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-AA-KLGL 194 (512)
Q Consensus 118 ~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~-~~~~ 194 (512)
.....+...+|.+ .+++|.+..+.+...++..+...+++++.|+++||+|||+.+.++.++.++....... .. ..+.
T Consensus 257 ~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (432)
T PRK10406 257 LCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP 336 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 3344455556664 4568999999999999888888999999999999999999887766544333322211 11 1022
Q ss_pred HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhh-HHHHHHhHHHHHhcccC-chhHHHHHHHHHHH
Q 010343 195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTV 272 (512)
Q Consensus 195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~ 272 (512)
...+....+.+++.+...+....++.|.+|++.|+.++|+.+...++ .+...|.+.+.+ +..| |...++..++..++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i 415 (432)
T PRK10406 337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVV 415 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHH
Confidence 22222222233333444456678889999999999999998876554 344577777755 4455 55556655555555
Q ss_pred HHHHHhh
Q 010343 273 WFTVWLS 279 (512)
Q Consensus 273 ~~~~~~~ 279 (512)
..+..++
T Consensus 416 ~~~~~~~ 422 (432)
T PRK10406 416 AFLVSLM 422 (432)
T ss_pred HHHHHHH
Confidence 5544444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=115.14 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=107.6
Q ss_pred hhhhhcccCCChhhHHHHHHHHH-HHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH---HHHhhcChHHHHHHHH
Q 010343 127 ILPMSAEFNWNPATVGLIQSSFF-WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV 202 (512)
Q Consensus 127 ~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 202 (512)
.+.+.+++|.++.++|++.+... ++..++.+++|++.||+|+|+.+..+..+..+..+.+ ++.++ +.+.+++..+
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~ 311 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK-HLWTMALAIG 311 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHH
Confidence 34567779999999999987654 5688999999999999999998877776665554333 23321 4555555543
Q ss_pred ----HHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHh
Q 010343 203 ----FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 203 ----l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 278 (512)
..|++.+...+....++.+.+|.++ .++.+...++|..+++.++|.+.+.+||+..|.+.++++++..++..
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777777766444 45666666788877778999999999999999998888877765554
Q ss_pred hh
Q 010343 279 SK 280 (512)
Q Consensus 279 ~~ 280 (512)
..
T Consensus 388 ~~ 389 (402)
T PRK11902 388 LM 389 (402)
T ss_pred HH
Confidence 43
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-10 Score=110.41 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=111.0
Q ss_pred HHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-CChHHHHHHHHHHHHHHHHHHHHhhcC
Q 010343 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKLG 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~ 193 (512)
+...........+|.+.++.|.+..+.+.+.++..++..++.++.|++.||+ +||+.+..+.++.+++.+.+.+.. +
T Consensus 208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 285 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--M 285 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--h
Confidence 3333344455567877778899999999999999999999999999999999 566677777777777777666655 3
Q ss_pred hHHHHHHHHHHhhhhhchhhHHHHHHhcccC-CcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
.... ...++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.|.+.++.|
T Consensus 286 ~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 286 HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 24567899999888888787766554 4667899999999999999999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=118.93 Aligned_cols=149 Identities=12% Similarity=-0.032 Sum_probs=114.7
Q ss_pred hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 010343 127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGI 206 (512)
Q Consensus 127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 206 (512)
++...++++.+... ...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.+..+.+..++..++.++
T Consensus 346 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 422 (505)
T TIGR00898 346 LVLDLGNLGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKF 422 (505)
T ss_pred HhccccccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 34444555655433 333455667788889999999999999999999988888887777663222555566677777
Q ss_pred hhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhh
Q 010343 207 GEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK 280 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 280 (512)
+.+..++..+.+..|.+|++.|++++|+.+....+|.+++|.+.+ + ...++..++++.+++.++..++.+++
T Consensus 423 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 423 GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 777788888999999999999999999999999999999999998 4 44567778888887777776665544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-09 Score=97.38 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 181 (512)
||..+......+... ...+.++..-|.+.+++|+|.+|...+.....+|..+ .++.|.+.|++|++.++.+|.+...+
T Consensus 1 rW~~l~a~~~v~~~~-Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCS-GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhc-CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 465555555555443 3567778888999999999999999999999999886 58999999999999999999999999
Q ss_pred HHHHHHHHhh-----cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 182 ATALTPVAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 182 ~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
++.+..++.. .++|.+.+..++.|.+.+....+......+.|| ++||.+.|+.-...++++.+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 9988766532 256777777888888877777777777778895 6899999999999999998888877777665
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=106.71 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=133.3
Q ss_pred hhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Q 010343 120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLV 199 (512)
Q Consensus 120 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (512)
...+...-..-..++|++..++.++.....+..+++.+++|++.||+|.|+++.++.++..+.++...+.. .-..+.+
T Consensus 269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--~~~~f~i 346 (438)
T COG2270 269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--GELDFWI 346 (438)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--ccHHHHH
Confidence 33333334444559999999999999999999999999999999999999999999999888887777766 5667788
Q ss_pred HHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHHHHHHHHHHHHHHh
Q 010343 200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 278 (512)
+..+.|++.|..+...-++..+.+|+++-++.+|+++..+..+..+||.+.+.+.+..| -|..+....++..+.+++.+
T Consensus 347 ~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 347 LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 88999999999999999999999999999999999999999999999999999988665 66666666555555544444
Q ss_pred hh
Q 010343 279 SK 280 (512)
Q Consensus 279 ~~ 280 (512)
..
T Consensus 427 ~v 428 (438)
T COG2270 427 RV 428 (438)
T ss_pred ee
Confidence 43
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-10 Score=110.81 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHH
Q 010343 326 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 405 (512)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 405 (512)
..+..++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|+|+.. .. +...
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~-------~~--~~~~ 82 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI-------LV--GMSI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH-------HH--HHHH
Confidence 3333334444444555566777665 899999999999999999999999999999999998432 22 2222
Q ss_pred HHHHHHhhccCChhHHHHHH-HHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcc
Q 010343 406 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 483 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~ 483 (512)
..+........++.+..... ++.+.+.+ ...+.......+ .++++++++.++.+....++..++|.+.|.+.+..||
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 161 (394)
T PRK11652 83 FILGTLVALFAHSLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW 161 (394)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 22222222222333333333 33333322 222333333333 3447889999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcC
Q 010343 484 DDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
+..|.+.+++.++..++.....+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~~~~ 184 (394)
T PRK11652 162 RACYLFLLLLGAGVTFSMARWMP 184 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999887766655544444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=112.34 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=111.8
Q ss_pred HHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 336 ~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
....+...+|.+.++ +|++..+.+++.+...++..++.++.|++.||+|+|+. +..+.+...........
T Consensus 6 ~~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~---------~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 6 AIDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV---------ILGGTLVFALAAVACAL 75 (377)
T ss_pred HHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH---------HHHHHHHHHHHHHHHHH
Confidence 445566788888877 79999999999999999999999999999999998842 22222222222222222
Q ss_pred CChhHHHHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHH
Q 010343 416 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 494 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 494 (512)
.++.+.......+.+...+...+.......+ .++++|+++.++.+....+|..++|.+++.+.+..+|+..|++.+++.
T Consensus 76 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 76 AQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 2333333333333333333333444444444 455789999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHhc
Q 010343 495 LVGTAVWNLFS 505 (512)
Q Consensus 495 ~~~~~~~~~~~ 505 (512)
++..++.....
T Consensus 156 ~~~~~~~~~~~ 166 (377)
T PRK11102 156 ILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHhC
Confidence 77665554443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-10 Score=99.72 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=115.0
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH-HHHHHHHHhhcChHHHHHHHHHHhhh
Q 010343 129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI-ATALTPVAAKLGLPFLLVVRVFMGIG 207 (512)
Q Consensus 129 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~G~~ 207 (512)
.+++++|+|+...+-+.+.......+..++.|.++||+|++.+.+.+..+..+ +-....+. .+.=++...+.|+.
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----~lsPy~~m~~lGLs 365 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----FLSPYTSMTFLGLS 365 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----hccHHHHHHHHhhh
Confidence 37889999999999999999999999999999999999999887766554443 33333332 33345677788999
Q ss_pred hhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC---chhHHH-HHHHHHHHHHHHHhhh
Q 010343 208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WPSVFY-SFGSLGTVWFTVWLSK 280 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---~~~~f~-~~~~~~~~~~~~~~~~ 280 (512)
.+.........++...|+++.|++.|..+...++|-.+.|+++|.+.+.-| |--.|+ +.+.+++....+.+..
T Consensus 366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 888888889999999999999999999999999999999999999998655 433443 3444444444444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-10 Score=109.94 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 399 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 399 (512)
+|.++...+...+.......+....+.+-++.+|++..+.+++.++..++..+.++..|++.||+|.|++ ...
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v-------~~~ 105 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW-------TVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-------HHH
Confidence 3566666666666666666666666666664699999999999999999999999999999999999943 222
Q ss_pred HHHhHHHHHHHHhhc---cCChhHH-HHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhh
Q 010343 400 SIGFLGPAFFLTQLS---HVDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATG 475 (512)
Q Consensus 400 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g 475 (512)
...+........... ..++.+. .+..++.+.+ +....+.......-.++++||++.|+.....++|..+++++..
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 222221111111111 1133333 3334444443 3333333333334455578999999997666666665555443
Q ss_pred hee-----e-------------cCcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 476 YIL-----Q-------------HGSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 476 ~l~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
.+. + ..+++.+.++...+.+++.++.++..++
T Consensus 185 ~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 185 LVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 322 2 2336666667666666666565555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9e-10 Score=109.68 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=107.5
Q ss_pred HHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccC
Q 010343 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 416 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (512)
......-+|... +.+|.+....++..+.+.++..++.++.|+++||+|||+.+. .+.+...+........
T Consensus 32 ~~~~~p~l~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~---------~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 32 TDLIQPGIINVV-RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLI---------TGALIFTLACAATLFT 101 (413)
T ss_pred HHhhccCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHH---------HHHHHHHHHHHHHHHc
Confidence 344445555544 448999999999999999999999999999999999994322 2222222222222223
Q ss_pred ChhHHHH-HHHHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHH
Q 010343 417 DSPAMAV-LCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 494 (512)
Q Consensus 417 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 494 (512)
++.+... .-++.+.+.. ...+.......+. +++++++++++.+....++..+||.+++.+.++.||+..|++.+++.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 102 TSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3443333 3344444333 3233334444444 44678999999999999999999999999999899999999988887
Q ss_pred HHHHHHHHHh
Q 010343 495 LVGTAVWNLF 504 (512)
Q Consensus 495 ~~~~~~~~~~ 504 (512)
+++.+..+..
T Consensus 181 ~i~~~~~~~~ 190 (413)
T PRK15403 181 LIAFVGLLLA 190 (413)
T ss_pred HHHHHHHHHh
Confidence 7776554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-10 Score=112.75 Aligned_cols=177 Identities=11% Similarity=0.010 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHH--------H
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL--------G 173 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--------~ 173 (512)
++.++...+..+........+...+|.+ .+++|.+..+.|++.++..++..++.++.|+++||+++|+.. .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIF 339 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3445556666666666666666677775 456899999999999999999999999999999997654221 1
Q ss_pred HHHHHHHHHHHH--HHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHH
Q 010343 174 FGVVWWSIATAL--TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP 251 (512)
Q Consensus 174 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 251 (512)
.+......+..+ ..... .+....+++..+.+.+.+...+.......|.. ++.+|..+++.+....+|..++|.+.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~l~~~i~p~l~g 417 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPYLS-AAFYLTIIILTLANAVSSGPLAGVLINSLDLA-PRFLGFIKGITGLPGFIGGLIASTLAG 417 (465)
T ss_pred HHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcC-hhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111111111 11111 13344444455555555555555555666766 458999999999999999999999999
Q ss_pred HHhccc---CchhHHHHHHHHHHHHHHHHhhhc
Q 010343 252 FLIHRF---GWPSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 252 ~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
.+.+.. +|+..|.+.++..++..++.....
T Consensus 418 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 418 NILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred eeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 887643 388888888877777666555443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=110.82 Aligned_cols=153 Identities=17% Similarity=0.119 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 185 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 185 (512)
....+..++............|.+ .+.+|.++...++......++..++.++++++.||+|+|+.+.++.++.+++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~ 310 (448)
T PRK09848 231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLL 310 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 333333444444444444445554 4457776665555555556778889999999999999999999999888888777
Q ss_pred HHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCc-------chhHHHHHHHHhhhhHHHHHHhHHHHHhcccC
Q 010343 186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA-------ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG 258 (512)
Q Consensus 186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 258 (512)
..+.+..+++.+++..++.|+|.+...+...++.+|..+.+ ++|..+|..+....+|..+|+.+.+.+.+..|
T Consensus 311 ~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 311 FFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 76654335667777788999999999999999999988654 35899999999999999999999999887666
Q ss_pred c
Q 010343 259 W 259 (512)
Q Consensus 259 ~ 259 (512)
+
T Consensus 391 ~ 391 (448)
T PRK09848 391 Y 391 (448)
T ss_pred C
Confidence 5
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=107.14 Aligned_cols=141 Identities=10% Similarity=0.034 Sum_probs=114.1
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhc
Q 010343 131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV 210 (512)
Q Consensus 131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 210 (512)
.+.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.++..++..+.+ +. ..+...++.|++.+.
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~glg~~~ 363 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GH-VGLIALTLCSAFMSI 363 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--Ch-HHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999888877776666665555 43 235567789999999
Q ss_pred hhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHHHHHHHHHHHHH
Q 010343 211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTV 276 (512)
Q Consensus 211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 276 (512)
.+|...+...+..++ +.+.+.++... ..+|..++|.+.|.+.+..| .+..|++..+..+.....
T Consensus 364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 999999999999854 56777777764 45788999999999999887 788888766555554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-09 Score=104.29 Aligned_cols=147 Identities=17% Similarity=0.092 Sum_probs=116.0
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhh
Q 010343 129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE 208 (512)
Q Consensus 129 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 208 (512)
.+.+.+|.++.+.|++.+...++..++++..+++.||.++|+++..+. +.++..++..+.+ +++...+..++.|++.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~ 307 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQH--SLLPAYPLLILIGALG 307 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHh--HHHHHHHHHHHHHHhh
Confidence 345668999999999999999999999999999999999998887775 3444444455555 6677777888999999
Q ss_pred hchhhHHHHHHhcccCCcc-hhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhh
Q 010343 209 GVAMPAMNNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279 (512)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 279 (512)
+...+..++.+.+..|++. +|++.++.+...++|..++..+.+.+ +.+|-+..+++.++..++...+.+.
T Consensus 308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9888888888888765554 79999999999999999999999865 5678777777655555544444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-10 Score=101.47 Aligned_cols=134 Identities=10% Similarity=0.038 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcc
Q 010343 148 FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE 227 (512)
Q Consensus 148 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 227 (512)
..+.-..+.++.+++.||+|||+.+..+++++++..++...+. +-....+.-+..-++.++.+...+.+..|.+|...
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~--~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK--TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence 3455667889999999999999999999999999998888777 33333334444444455556777889999999999
Q ss_pred hhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccCCC
Q 010343 228 RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285 (512)
Q Consensus 228 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 285 (512)
|+.+.|....+..+|+++.|+++ +....+-..+..+.+.+.+++.+...+++-+++
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 99999999999999999999999 433345556667777788888777777766654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-09 Score=107.09 Aligned_cols=154 Identities=10% Similarity=0.018 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 185 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 185 (512)
+..+....++............+++.+....+....+++.++..++.+++.++++++.||+|+|+.+.++.++..++.+.
T Consensus 233 ~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~ 312 (473)
T PRK10429 233 LSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGV 312 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555556666655556777888888888899999999999999999999998888776665554
Q ss_pred HHH---HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccC-------CcchhHHHHHHHHhhhhHHHHHHhHHHHHhc
Q 010343 186 TPV---AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIH 255 (512)
Q Consensus 186 ~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 255 (512)
..+ ....+.+.+++..++.|++.+...+...++++|..+ .++.|..+|......-+|..+++.+.|.+.+
T Consensus 313 ~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 313 LLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 121256677778888999999999999999999965 2334668999999999999999999999988
Q ss_pred ccCc
Q 010343 256 RFGW 259 (512)
Q Consensus 256 ~~g~ 259 (512)
..|+
T Consensus 393 ~~Gy 396 (473)
T PRK10429 393 LIGY 396 (473)
T ss_pred HcCC
Confidence 7665
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-08 Score=93.03 Aligned_cols=320 Identities=13% Similarity=0.122 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHh
Q 010343 141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS 220 (512)
Q Consensus 141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 220 (512)
.|.+.-+-.+...+..+.+.++.+|...+.-.....++..++.++.++++ +.+.-+++-++.+++.|........+..
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt~ 138 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLTH 138 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 45567777788889999999999999876666677778888999999988 8888889999999999888877777644
Q ss_pred cccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc--hhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCh-----
Q 010343 221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP----- 293 (512)
Q Consensus 221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 293 (512)
.+++ ...+-+..+.+.++++|+..-..+.. .|+ |..++....+.++..+..++..+.++.+....+.
T Consensus 139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~ 212 (402)
T PF02487_consen 139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDE 212 (402)
T ss_pred -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCc
Confidence 5543 35677888888889999888777766 554 6677777766655555545444433222111110
Q ss_pred hhhHhhhhccccCC--CCCCchHHH-hhcChHHHHHHHHHHHHHHHHHHHHHhh-HHHHH-HhhcCCccchhhhhhhhHH
Q 010343 294 AEKKLIVSSCASKE--PVKTIPWGL-ILSKPPVWALIVSHFCHNWGTFILLTWM-PTYYN-QVLHFNLTESGLFCVLPWL 368 (512)
Q Consensus 294 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~-~~~g~~~~~~g~~~~~~~~ 368 (512)
.+.+....+..+.+ ...+..+++ ..+-|.+....+-.++.++..+.++.-+ +...- ....-...+..+....+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~ 292 (402)
T PF02487_consen 213 AEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQL 292 (402)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence 00000011100111 111112221 1122333334444455555555554322 22221 1112223455566667777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHH-HHHHHHHhhhhhhhhchhhhhhhhh
Q 010343 369 TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDI 447 (512)
Q Consensus 369 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
|..+++--...+ | .|++.+.. .+..+-+ +..+.-..+...++.|.. +.++..|...+..+......+.++.
T Consensus 293 GVFISRSS~~~~--r--ir~lwils---~LQ~~nl-~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~ 364 (402)
T PF02487_consen 293 GVFISRSSLPFF--R--IRRLWILS---LLQVINL-VFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEV 364 (402)
T ss_pred HHhhhhcceeee--e--hhhHHHHH---HHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 777776543322 2 23221111 1111111 111111122223344444 4455556666666666777777888
Q ss_pred cCcchhhHHHHHHHHHhHHHHHHHHhhhh
Q 010343 448 APRYSGVLLGLSNTAGVLAGVFGTAATGY 476 (512)
Q Consensus 448 ~~~~~g~~~g~~~~~~~~g~~ig~~l~g~ 476 (512)
++++|..++|.......+|..++..++-+
T Consensus 365 ~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 365 PPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88999999999998888888887776544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=120.96 Aligned_cols=147 Identities=15% Similarity=0.185 Sum_probs=122.6
Q ss_pred hhhhhhh-hhcccCCChh-hHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Q 010343 123 MSIAILP-MSAEFNWNPA-TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV 200 (512)
Q Consensus 123 ~~~~~~~-~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (512)
....+|. +.+++|.+.. +.|++.+...++.+++.+++|++.||+++++.+.++.++.+++.+++.+.. +.+.+++.
T Consensus 251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 328 (1146)
T PRK08633 251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVL 328 (1146)
T ss_pred HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHH
Confidence 3334444 5567899999 999999999999999999999999999999999888888888888887777 78888888
Q ss_pred HHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-ccCchhHHHHHHHHHH
Q 010343 201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGT 271 (512)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~~~~f~~~~~~~~ 271 (512)
.++.|++.+...+...+++.+..|+++|++++|+.+....+|.++++.+++.+.. .+++...|++.+.+.+
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888776654 2345555655554443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-07 Score=96.83 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=127.5
Q ss_pred hhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh-cCChHHHHHHHHHHHHHHHHHHHHhhc------ChHHH
Q 010343 125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATALTPVAAKL------GLPFL 197 (512)
Q Consensus 125 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~l 197 (512)
....++.+.+|.+...+..+...+....-+..+++|.++|+ +|+++.+.++.++..++.++..+.... .....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 33445566789999999999999988889999999999996 799999999999999988887764310 12346
Q ss_pred HHHHHHHhhhhhchhhHHHHHHhcccCCc---chhHHHHHHHHhhhhHHHHHHhHHHHHhccc-------CchhHHHHHH
Q 010343 198 LVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYSFG 267 (512)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~f~~~~ 267 (512)
+++..+.++|.|++-+...+...|.++++ +|.+.+.++..+.++|+.+++.+.+++.+.. +|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 67788889999999999999999999754 3677899999999999999999999887443 6999999988
Q ss_pred HHHHHHHHHHhhhc
Q 010343 268 SLGTVWFTVWLSKA 281 (512)
Q Consensus 268 ~~~~~~~~~~~~~~ 281 (512)
++.++..++.....
T Consensus 169 i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 169 ILMILALIVFMAGS 182 (654)
T ss_pred HHHHHHHHHHHHhc
Confidence 88887776665443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=121.62 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=121.4
Q ss_pred hhhhhhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHH-------
Q 010343 118 MDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA------- 189 (512)
Q Consensus 118 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------- 189 (512)
+....+...+|.+. +.+|.++.+.|++.+.+.++.+++.++.|++.||.++++.+..+.++.++..+.+.+.
T Consensus 239 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (1140)
T PRK06814 239 LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAE 318 (1140)
T ss_pred HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccc
Confidence 33334444556644 5589999999999999999999999999999998887776666665555554444332
Q ss_pred -------------hhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc-
Q 010343 190 -------------AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH- 255 (512)
Q Consensus 190 -------------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~- 255 (512)
. +.+.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.+.+
T Consensus 319 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 319 PAQLKSILVFLSKR--HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred cccccchhhhhccc--ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 667788889999999999999999999999999999999999999999999999999999874
Q ss_pred ccCchhHHHHHHHHHHHH
Q 010343 256 RFGWPSVFYSFGSLGTVW 273 (512)
Q Consensus 256 ~~g~~~~f~~~~~~~~~~ 273 (512)
..++...+++.+++.++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 397 GFSIPWIILFIALANLIV 414 (1140)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 456666666555544433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=101.62 Aligned_cols=171 Identities=9% Similarity=0.029 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 010343 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402 (512)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 402 (512)
++.+.+..++..+........+|.+ ++++|.+..+.|++.+...++..++++..|++.||+|+|+. ......
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-------~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-------ILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-------HHHHHH
Confidence 4455556666666666666777776 45589999999999999999999999999999999999842 222222
Q ss_pred hHHHHHHHHh-hccCChhHHHHH-HHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 403 FLGPAFFLTQ-LSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 403 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
+...+..+.. ....++.+.... .++.+.+.+..............+++++++..++.+....+|..++|.+.+.+...
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222111 112233443333 34444444433333333333444557899999999999999999999999877432
Q ss_pred --------------------------CcchhHHHHHHHHHHHHHHHH
Q 010343 481 --------------------------GSWDDVFKVSVGLYLVGTAVW 501 (512)
Q Consensus 481 --------------------------~g~~~~~~~~~~~~~~~~~~~ 501 (512)
.+|+..|++.+++.++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888988887766655444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-09 Score=105.28 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.+..+.+..++............+++.++.-.++...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.+
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 34455555666666666666666666665433447788888999999999999999999999999999999999999998
Q ss_pred HHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCC-------cchhHHHHHHHHhhhhHHHHHHhHHHHHhccc
Q 010343 185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIHRF 257 (512)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 257 (512)
+..+.+..+.+.+++..++.|++.+.......++++|..+. ++.|..+|.......+|..+++.+.+.+.+..
T Consensus 306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 88777533789999999999999999999999999999863 33588999999999999999999999988766
Q ss_pred Cc
Q 010343 258 GW 259 (512)
Q Consensus 258 g~ 259 (512)
|+
T Consensus 386 Gy 387 (428)
T PF13347_consen 386 GY 387 (428)
T ss_pred Cc
Confidence 64
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-09 Score=100.48 Aligned_cols=158 Identities=13% Similarity=-0.045 Sum_probs=109.4
Q ss_pred HHHHhhHHHHHHhhcCCccc-hhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCC
Q 010343 339 ILLTWMPTYYNQVLHFNLTE-SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 417 (512)
Q Consensus 339 ~~~~~~~~~l~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (512)
....+...++.+.+|++.++ .|.+++.+..+..+..+.+|++.||+|.|+ ++..+.+...+...+....+
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~---------vL~l~~l~Wsl~t~L~~fa~ 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP---------VLVLQALSFVCVWLLLLLGT 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHHHHHHHHHHHHH
Confidence 34455556777679999999 999999999999999999999999999983 33333333333333333333
Q ss_pred hhHHHHHH-HHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchh---HHHHHHHH
Q 010343 418 SPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD---VFKVSVGL 493 (512)
Q Consensus 418 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~---~~~~~~~~ 493 (512)
+...+.+. +++|.+-+... .....+..-+++++|+++.|+.+....+|.+++++++++ ....||+. ...+..+.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Confidence 34444444 44455544444 555555566777999999999999999999999999999 44556654 44455555
Q ss_pred HHHHHHHHHHhcCC
Q 010343 494 YLVGTAVWNLFSTG 507 (512)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (512)
..++.++.+++.+.
T Consensus 192 ~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 192 MTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHhCCCC
Confidence 56666665555533
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=93.68 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=134.9
Q ss_pred HHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-CChHHHHHHHHHHHHHHHHHHHHhhc
Q 010343 114 LLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKL 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~ 192 (512)
-++.+..+.....+|.+..|.|+|+.+.|++.++..+......+....+++|. ++|+..+....++.++.+.+.+.+..
T Consensus 218 GlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~ 297 (395)
T COG2807 218 GLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ 297 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455566777789999999999999999999999999999999999999975 56777777888888888888777732
Q ss_pred ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCC-cchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHHHHHHH
Q 010343 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLG 270 (512)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~ 270 (512)
++ ++. .++.|+|.+..++.....+.+..+. ++-++-.+..+..+.+=..+||.+.|++-|..| |+..+.......
T Consensus 298 ~~--~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 298 LP--ILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HH--HHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 22 222 5899999999999999999988754 445777888888888889999999999999765 999988888777
Q ss_pred HHHHHHHhhhcc
Q 010343 271 TVWFTVWLSKAH 282 (512)
Q Consensus 271 ~~~~~~~~~~~~ 282 (512)
++..+.-+..-+
T Consensus 375 i~m~i~Gl~a~r 386 (395)
T COG2807 375 LLMLIFGLRAGR 386 (395)
T ss_pred HHHHHHHhhcch
Confidence 777666655544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-09 Score=106.29 Aligned_cols=136 Identities=12% Similarity=0.093 Sum_probs=101.9
Q ss_pred hhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 010343 124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF 203 (512)
Q Consensus 124 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 203 (512)
....+++.++.-.++...+.+.....+..+++.++++++.||+|+|+.+..+.++.++..+...+.+..+.+.+++..++
T Consensus 249 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 328 (444)
T PRK09669 249 GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNIL 328 (444)
T ss_pred hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 33334444433224445556666777888889999999999999999998887766654443333322266777888899
Q ss_pred HhhhhhchhhHHHHHHhcccCC-------cchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 204 MGIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
.|++.+...+...++++|..+. ++.|..++..+....+|..+|+.++|.+.+..|+
T Consensus 329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998852 2346678999999999999999999999987776
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-07 Score=90.83 Aligned_cols=317 Identities=13% Similarity=0.040 Sum_probs=192.1
Q ss_pred HHHH-HHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHH
Q 010343 141 VGLI-QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219 (512)
Q Consensus 141 ~g~~-~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 219 (512)
.|.. .++......+..++++.+.|+.|.|+.++++..+...-.+.+.+. |-+.++....+.|+|.+..+.....++
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---N~y~~yfssallG~Gaallw~GqG~yl 127 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---NSYYLYFSSALLGFGAALLWTGQGGYL 127 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---chHHHHHHHHHhhhhHHheecccceeh
Confidence 3443 677778888999999999999999999999999888777766554 567889999999999999999999999
Q ss_pred hcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC--------ch-h----------HHHHHHHHHHHHHHHHh--
Q 010343 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--------WP-S----------VFYSFGSLGTVWFTVWL-- 278 (512)
Q Consensus 220 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------~~-~----------~f~~~~~~~~~~~~~~~-- 278 (512)
.+..+++.+.+..++..+....+.++|..+...+....+ -+ . ...+.+++..+..+...
T Consensus 128 t~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~ 207 (461)
T KOG3098|consen 128 TSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINF 207 (461)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhe
Confidence 999999999999999999999999888776655433211 11 0 11111111111111111
Q ss_pred hhccCCCCCC-CCCCh-hhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--hcC
Q 010343 279 SKAHSSPAED-PQLRP-AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHF 354 (512)
Q Consensus 279 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~--~g~ 354 (512)
...|.+.... .+..+ ...+ .....-+++++|++..+....+..+....-+....|..+.-. .+.
T Consensus 208 ~~~p~~~~~~~~~~~~~~~~~------------~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~ 275 (461)
T KOG3098|consen 208 DFLPSKDVVNCKSSSETSFSE------------LLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGS 275 (461)
T ss_pred eecCccchhhhhhhccccHHH------------HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccC
Confidence 1111111100 00000 0000 011233567788888777776666666655666666555432 222
Q ss_pred C-ccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHH--Hhhcc--------------CC
Q 010343 355 N-LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL--TQLSH--------------VD 417 (512)
Q Consensus 355 ~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------~~ 417 (512)
+ ....+......+++.+++....+.+.+|..+...... ......+......+ +.... .+
T Consensus 276 n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~----~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~ 351 (461)
T KOG3098|consen 276 NTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT----VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTP 351 (461)
T ss_pred cchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc----hhHHHHHHHHHHHHHhccccccCCCCCCccccccccc
Confidence 2 2334555556677888888888888877654432111 11111111111111 11110 01
Q ss_pred hhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhh
Q 010343 418 SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGY 476 (512)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~ 476 (512)
......+...+.+............+.....|+++..+.++.-.-..++..++-.....
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 23344444455555566666677777777778888888888887777777666555544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=103.71 Aligned_cols=169 Identities=16% Similarity=0.152 Sum_probs=149.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 010343 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA 189 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 189 (512)
++..++.+++...+..++-.-.++++..+...|........+-++.-++.+++.+|+|+-+++.+++.+.++=++.+.+.
T Consensus 377 f~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L 456 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL 456 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence 34444556666666677777889999889999988888888999999999999999999999999999999999999999
Q ss_pred hhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhh-hhHHHHHHhHHHHHhcccCchhHHHHHHH
Q 010343 190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM-YLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268 (512)
Q Consensus 190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 268 (512)
. |.|..+...+++|+..+..+.+..+++++..||+-+..+.++.+... ++|--+|.+++|.+.+.+|-|..|.+.++
T Consensus 457 ~--n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~gi 534 (618)
T KOG3762|consen 457 Q--NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGI 534 (618)
T ss_pred c--CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999977654 78999999999999999999999999988
Q ss_pred HHHHHHHHHhhh
Q 010343 269 LGTVWFTVWLSK 280 (512)
Q Consensus 269 ~~~~~~~~~~~~ 280 (512)
.+++.+++....
T Consensus 535 Acl~~l~~~~~i 546 (618)
T KOG3762|consen 535 ACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHHHh
Confidence 888776665544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-10 Score=106.94 Aligned_cols=177 Identities=14% Similarity=0.094 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 010343 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402 (512)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 402 (512)
...+.+...+.+.-.+.+...++-. ++.+|.+....|++...+.+..++++++.|++.||++|++++..+.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~-------- 105 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI-------- 105 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH--------
Confidence 3344444444444444444433332 3448999999999999999999999999999999999996554432
Q ss_pred hHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC-cchhhHHHHHHHHHhHHHHHHHHhhhheeecC
Q 010343 403 FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG 481 (512)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~ 481 (512)
..-....+........|.++++=.+.+.+.+...+....++.+..+ ++|++++++++.+..+|..+|-..++.+.++.
T Consensus 106 -~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 106 -FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 2222222222223556666666555555556666777777766666 68999999999999999999999999999986
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHhcCCcc
Q 010343 482 S-WDDVFKVSVGLYLVGTAVWNLFSTGEK 509 (512)
Q Consensus 482 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (512)
+ |++.|...+++.++..++..++.++++
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 6 999999999999999888888876654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=87.06 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=90.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchh
Q 010343 361 LFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL 440 (512)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
++.+...++.+++.++.|++.||+++|+. ... +..............++.+.......+.+.......+..
T Consensus 2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 72 (141)
T TIGR00880 2 LLLAGYALGQLIYSPLSGLLTDRFGRKPV-------LLV--GLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAG 72 (141)
T ss_pred EEEEeehhHHHHHHhhHHHHHhhcchhHH-------HHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhH
Confidence 34566778899999999999999998842 222 211211222222222333333333333333333333444
Q ss_pred hhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 441 YSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 441 ~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
.... +..++++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.+.+.+++.+......+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4444 44455789999999999999999999999999999999999998888777777666555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.4e-09 Score=100.81 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=100.8
Q ss_pred HhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHH-HHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHh-h--
Q 010343 116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFF-WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-K-- 191 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~-- 191 (512)
............|.+.+++|.++.++|.+..+.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+.. .
T Consensus 221 ~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (356)
T TIGR00901 221 YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH 300 (356)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444444555566766679999999999888766 57789999999999999999999888888877766555431 1
Q ss_pred ------cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhh
Q 010343 192 ------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY 240 (512)
Q Consensus 192 ------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 240 (512)
.+.+.+..+.++.+++.+...+...+++.+.+|+++|++.+|+.++..+
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 301 HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 1456777888899999999999999999999999999999999887654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=101.02 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=114.4
Q ss_pred hcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhh
Q 010343 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQG 431 (512)
Q Consensus 352 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
++-+..++|++++...+.+++.+++.|.+.||+|.| ..+.+++.........+...++.+..++.=.+-+.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~---------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK---------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGV 171 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc---------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence 455678899999999999999999999999999999 45556666666666666666666655555444444
Q ss_pred hhhhhhchhhhhhhhhcC-c-chhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 432 TDAFSQSGLYSNHQDIAP-R-YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~-~-~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
..++....-..+..+..| | +|++++|....+..+|..+||.++|.++|..|++..|+++++++++-..+-++....
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 444444444555544444 4 589999999999999999999999999999999999999999999888776665443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=96.71 Aligned_cols=180 Identities=12% Similarity=0.150 Sum_probs=129.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc----CCccchhhhhhhhHHHHHHHHHHHHHHHHHH-HhcCCchhhH
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH----FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTTV 394 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g----~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~ 394 (512)
.|.++.+...-+.-.++++++...+..|+....+ ++.+++.-+++.++.-.-...+++||++||+ |+|+
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~------ 93 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR------ 93 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH------
Confidence 4467778888888999999999999999988888 9999999999999888888999999999996 6663
Q ss_pred HHHHHHHHhHHHHHHHHhhcc-CChhHHHHHHHHHHhhhhhhhhchhhhhhhh-hcCc--chhhHHHHHHHHHhHHHHHH
Q 010343 395 RKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPR--YSGVLLGLSNTAGVLAGVFG 470 (512)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~g~~~g~~~~~~~~g~~ig 470 (512)
..++...+...+-..+.... .......+.+..+..+.+..= +....+..+ .+++ +|-..++++.+..++|+.++
T Consensus 94 -tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K-~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~ 171 (498)
T COG3104 94 -TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK-PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIA 171 (498)
T ss_pred -HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc-ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHH
Confidence 22222222222222222221 223334444444444433333 333444433 3332 47788899999999999999
Q ss_pred HHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 471 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 471 ~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
|.+.+++.+++||...|...++-+.++.+.+++.+|.
T Consensus 172 p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 172 PIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999999888777654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=99.82 Aligned_cols=180 Identities=9% Similarity=0.044 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhc-ccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCCh---------HHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK---------AVL 172 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~ 172 (512)
...++.++++.+........+...+|.+.+ -+|++..+.|++.++..+...+..+.+|.++||.-+| ..-
T Consensus 257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFN 336 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHH
Confidence 346778888888888888889889999666 5899999999999999999999999999999987652 223
Q ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhh-hchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHH
Q 010343 173 GFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE-GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP 251 (512)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 251 (512)
.++....++..+.+++.+..+.+..+++ +..+.+. |...+..+.-..|.. +++-+..+|+.+....+...++|.+.+
T Consensus 337 ~i~~~~~ai~l~~l~~~~~~~~~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg 414 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFTSDEHRLLAVIL-LTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVG 414 (466)
T ss_pred hHHHHHHHHHHHeeeecCCCcchHHHHH-HHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 3555566666666666653222122222 2222222 333333333333434 778899999999999999999999999
Q ss_pred HHhc---ccCchhHHHHHHHHHHHHHHHHhhhccCC
Q 010343 252 FLIH---RFGWPSVFYSFGSLGTVWFTVWLSKAHSS 284 (512)
Q Consensus 252 ~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 284 (512)
.+.. ...|+..|++.+++.++..++..++-..+
T Consensus 415 ~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e 450 (466)
T KOG2532|consen 415 IIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGE 450 (466)
T ss_pred eEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCc
Confidence 9984 23699999999999888876666554333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-08 Score=97.95 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHH----HHHhcCCchhhHHHH
Q 010343 322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD----TLVSKGLSVTTVRKI 397 (512)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~~~~ 397 (512)
++..+....+...+.+.....+++.|+++ +|.+....+.+..+..+..++..++.|+++| |+||||...
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i------ 77 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI------ 77 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH------
Confidence 34455556666677788888899999876 8999999999999999999999999999999 599995422
Q ss_pred HHHHHhHHHHHHHHhhccCCh--------------h---HHHHHHHHHHhhhhhhhhchhhhhhhhh-cCcc--hhhHHH
Q 010343 398 MQSIGFLGPAFFLTQLSHVDS--------------P---AMAVLCMACSQGTDAFSQSGLYSNHQDI-APRY--SGVLLG 457 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~g~~~g 457 (512)
. .+.....+.+..+..... . +..+..+.+.............++..|. ++++ ++.+.+
T Consensus 78 -l-~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~ 155 (477)
T TIGR01301 78 -A-AGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA 155 (477)
T ss_pred -H-HHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence 2 212222222222211111 1 1122222222222332333344455554 4443 368999
Q ss_pred HHHHHHhHHHHHHHHhhhhe--eec-------------CcchhHHHHHHHHHHHHHHHHHHhcCCc
Q 010343 458 LSNTAGVLAGVFGTAATGYI--LQH-------------GSWDDVFKVSVGLYLVGTAVWNLFSTGE 508 (512)
Q Consensus 458 ~~~~~~~~g~~ig~~l~g~l--~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (512)
+.+...++|+.+|+.++|+. .+. .+++..|.+.+++.+++.++..+..+++
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 99999999999999999875 221 1677889988888888777766665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=92.51 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhh-cccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA 182 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 182 (512)
+.+...++..++.............++. ..+|.+..+..+.......+.+++.+++.++.+|+|+|+++.++.++.+++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG 315 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3444444556666666666666655544 457878888888888888888888999999999999999999999999999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCC-------cchhHHHHHHHHhhhhHHHHHHhHHHHHhc
Q 010343 183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIH 255 (512)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 255 (512)
.++..+.+..+.+.+++..++.+++.+...+...++++|..+- +.-|...+......=+|..++..+.|++.+
T Consensus 316 ~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 316 YLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888755678888899999999999999999999988742 333778888888888999999999999887
Q ss_pred ccCc
Q 010343 256 RFGW 259 (512)
Q Consensus 256 ~~g~ 259 (512)
..|+
T Consensus 396 ~~Gy 399 (467)
T COG2211 396 AIGY 399 (467)
T ss_pred HcCC
Confidence 7664
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-07 Score=83.97 Aligned_cols=363 Identities=12% Similarity=0.093 Sum_probs=222.8
Q ss_pred cccCCChhhHH-HHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhc
Q 010343 132 AEFNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV 210 (512)
Q Consensus 132 ~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 210 (512)
.+.+++..|+- -+.=...-.+.+.-.+.=.+.|-...|++++.-.+.......+..+.+ +.+.+=+.-+..|...+
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tA- 110 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATA- 110 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHH-
Confidence 34566666543 122233334555566677789999889988877777777777777777 88888888888888865
Q ss_pred hhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC--chhHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010343 211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288 (512)
Q Consensus 211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (512)
...+.++++-...+++++.++.|...+..-.|...|..++..+.+.-. +...=.+......++.++..++++. ++..
T Consensus 111 aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v-~rSl 189 (433)
T KOG3810|consen 111 AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRV-KRSL 189 (433)
T ss_pred HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCC-chhh
Confidence 457788888899999999999999999999999999999988876433 3333333333333333334343333 2211
Q ss_pred CCCChhhhHhhhhccccCCCC-------------CCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-cC
Q 010343 289 PQLRPAEKKLIVSSCASKEPV-------------KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL-HF 354 (512)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-g~ 354 (512)
-....+++. ...+.++.++. -..++....+||.++...+-..+...+++....+.....++.- +-
T Consensus 190 ~f~~~~~~~-~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~ 268 (433)
T KOG3810|consen 190 YFHRLEDKI-SVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNP 268 (433)
T ss_pred hhhcccccc-eeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCc
Confidence 111111110 01111111110 0124455678888887777777777777777777776666641 11
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHH-Hhhhh
Q 010343 355 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTD 433 (512)
Q Consensus 355 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 433 (512)
....-|..-++..+.+.++.+..|.+.-++.|. +..++..+.+..+.++..+......|+..+..++ .....
T Consensus 269 ~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~ 341 (433)
T KOG3810|consen 269 ANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQ 341 (433)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHh
Confidence 122335666677778888888888886655555 3355555555555555555555555555544444 44444
Q ss_pred hhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCc-----------chhHHHHHHHHHHHHHHHHH
Q 010343 434 AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-----------WDDVFKVSVGLYLVGTAVWN 502 (512)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g-----------~~~~~~~~~~~~~~~~~~~~ 502 (512)
.........+..+...|.-|..+|+...+.-+ +-..+.-.+.|.-| |..-|.+.+++.+++..+..
T Consensus 342 l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 342 LTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred hhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 44445555666777788889999997665543 34445555566322 44567778888888766655
Q ss_pred HhcCCcc
Q 010343 503 LFSTGEK 509 (512)
Q Consensus 503 ~~~~~~~ 509 (512)
...++.|
T Consensus 419 ~~~~~~~ 425 (433)
T KOG3810|consen 419 LMCRRNK 425 (433)
T ss_pred HHhhcCC
Confidence 5554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=99.62 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=115.4
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHh-h-------cChHHHHHHH
Q 010343 130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-K-------LGLPFLLVVR 201 (512)
Q Consensus 130 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~ 201 (512)
..+.+|.++.++|++.....++.+++....+++.+|++.|+++.++.++.+++.+...+.. . .+.+.++...
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 3357899999999999999999999999999999999999999999998888775542110 0 0334566667
Q ss_pred HHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-----chhHHHHH
Q 010343 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-----WPSVFYSF 266 (512)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~~~~f~~~ 266 (512)
++.+++.+....+...++.+..|+++++..+++.++..++|..+++.+++.+.+..| ++..+...
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i 428 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI 428 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence 889999999999999999999999999999999999999999999999999998877 55544443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8e-08 Score=90.39 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
+.+-+....++.|+..........+++.+.++ .|.+..+.+...+.+..+.+++.+...++..|+...|.+....++..
T Consensus 234 ~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i 313 (422)
T COG0738 234 QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI 313 (422)
T ss_pred hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 33445556666777777777777787777776 88899999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
+.++...+.+ +. .-+.+-++.|++.+..+|...+...+..+ +....-|..-.+..+|+++.|.+.|++.|..|-.
T Consensus 314 ll~~~~~l~~--g~-v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~ 388 (422)
T COG0738 314 LLLLAVALIG--GV-VALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQ 388 (422)
T ss_pred HHHHHHHHhc--Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhH
Confidence 8788888887 64 44456678899999999999999999997 3445556666777899999999999999999988
Q ss_pred hHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWF 274 (512)
Q Consensus 261 ~~f~~~~~~~~~~~ 274 (512)
..+.+...++.+..
T Consensus 389 ~~~~~~pllc~lyV 402 (422)
T COG0738 389 LTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHHHH
Confidence 88875555555544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=95.97 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=93.7
Q ss_pred HHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc-
Q 010343 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH- 415 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 415 (512)
.+.+..+.+. +++.+|++..+.+.+..... ......++.|++.||+|+|+++.. ...+...+..+..+..
T Consensus 43 ~y~fsv~s~~-L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vlli-------g~ll~~iG~ll~ala~~ 113 (591)
T PTZ00207 43 MYAFNLISGA-MQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVL-------SMTVFCLGTLLFALTFQ 113 (591)
T ss_pred HHHHHHHHHH-HHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 3455555554 45568999999998887643 334566788999999999943222 2111111111111111
Q ss_pred ---CChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHH-HHHhhhheeecCcchhHHHHHH
Q 010343 416 ---VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVFKVSV 491 (512)
Q Consensus 416 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~l~g~l~~~~g~~~~~~~~~ 491 (512)
..+.+.+.+...+.+...+...+.......+..|++||++.|+......+|.++ ++...+++. .+++..|++.+
T Consensus 114 ~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~ 191 (591)
T PTZ00207 114 EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLM 191 (591)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHH
Confidence 123343333333333333333333333444456889999999999999999976 444454443 35777777777
Q ss_pred HHHHHHHHHHHHhcC
Q 010343 492 GLYLVGTAVWNLFST 506 (512)
Q Consensus 492 ~~~~~~~~~~~~~~~ 506 (512)
++.++..++...+.+
T Consensus 192 vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 192 SFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHhhee
Confidence 777776666555544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-11 Score=123.17 Aligned_cols=181 Identities=12% Similarity=0.045 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.+..+.+..+....+........+.+.++.+.+.. -.......+...++.+....+.||+|||++++.+..+.+++.+
T Consensus 254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~ 331 (451)
T PF00083_consen 254 LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSL 331 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 33333333333333444455556778888887776 1222233345556777778999999999999999888887776
Q ss_pred HHH--H--HhhcC---hHHHHHHHHHHhhh-hhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 185 LTP--V--AAKLG---LPFLLVVRVFMGIG-EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 185 ~~~--~--~~~~~---~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
.++ . ..+.+ -...++.-.+..++ .....+....+..|.+|.+.|+++.++......++..+++.+...+.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 411 (451)
T PF00083_consen 332 ILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN 411 (451)
T ss_pred ccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 664 1 11110 11112222222222 2234566678889999999999999999999999999999998888877
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 287 (512)
.+-...+.+.+++.++..+..+.+.||++.+
T Consensus 412 ~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 412 LGGWGVFLIFAGVCLIAIIFVYFFLPETKGK 442 (451)
T ss_pred ccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence 7645666666777777777777777776543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=94.81 Aligned_cols=143 Identities=12% Similarity=0.036 Sum_probs=95.4
Q ss_pred hhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 010343 117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (512)
............++.+....++...+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+..+...
T Consensus 241 ~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (460)
T PRK11462 241 ILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASIT 320 (460)
T ss_pred HHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 33333333333343333333445566777888899999999999999999999987765554444333333333212334
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHhcccC-------CcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCc
Q 010343 197 LLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 259 (512)
+++..++.|++.+...+...++++|..+ +++.|..++......-+|..+++.++|.+.+..|+
T Consensus 321 ~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 321 MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555667788877777777888888775 23335666777788899999999999998876665
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-05 Score=80.19 Aligned_cols=283 Identities=10% Similarity=0.035 Sum_probs=168.5
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHH-HHHHHHhhhhHhHhhcCChHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFGVVW 178 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 178 (512)
+..++.++.+.+.+|+..+..+..-..-..+.-.- .+++.+..+=....+ +..+...+..++.+|+++.+++.+....
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~-~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~ 98 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVTA-QGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEec-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455666677777766665554443322221111 266677777665444 4456678899999999999988877666
Q ss_pred HHHHHHHHHHHhh-------c----------------------ChHHHHHHHHHHhhhhhchhh-HHHHHHhcccCCcch
Q 010343 179 WSIATALTPVAAK-------L----------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPVAER 228 (512)
Q Consensus 179 ~~~~~~~~~~~~~-------~----------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r 228 (512)
+.....++++.-. . +.|...+..+..-+-.+.... ..+.+..|.++.+|-
T Consensus 99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA 178 (491)
T PF03219_consen 99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA 178 (491)
T ss_pred HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 6665555544310 0 113333333333443333333 568899999999999
Q ss_pred hHHHHHHHHhhhhHHHHHHhHHHHHhc---------ccCchhHHHHH----HHHHHHHHHHHhhhccCCCCCCCCCChhh
Q 010343 229 SRSLALVYSGMYLGSVTGLAFSPFLIH---------RFGWPSVFYSF----GSLGTVWFTVWLSKAHSSPAEDPQLRPAE 295 (512)
Q Consensus 229 ~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~g~~~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (512)
.|..++...+.++|.++++.+...+.+ ...|...+... .+.+++...+.....+... +++...+..
T Consensus 179 KRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl-~~~~~~~~~ 257 (491)
T PF03219_consen 179 KRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVL-TDPRFYPSA 257 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-Cccccchhh
Confidence 999999999999999999999888877 12344333221 1222222222222221111 111100000
Q ss_pred hHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccc----hhhhhhhhHHHHH
Q 010343 296 KKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTMA 371 (512)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~----~g~~~~~~~~~~~ 371 (512)
+ .+..++.+....++++.++++|.+..+++...+++.....+....-..+++.+. ++.+ .|-.....++..+
T Consensus 258 ~---~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivti 333 (491)
T PF03219_consen 258 K---KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTI 333 (491)
T ss_pred h---cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHH
Confidence 0 001111122224577889999999999998888888888777777666666443 3333 2445556667777
Q ss_pred HHHHHHHHHHHHHHhcC
Q 010343 372 FSANLGGWIADTLVSKG 388 (512)
Q Consensus 372 ~~~~~~g~l~dr~~~~~ 388 (512)
+..++++.+.+|+|-+.
T Consensus 334 i~~~l~~~iir~~GW~~ 350 (491)
T PF03219_consen 334 IMMFLSSNIIRRFGWRT 350 (491)
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 77788889999988773
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=102.08 Aligned_cols=167 Identities=14% Similarity=0.056 Sum_probs=107.3
Q ss_pred HHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc-
Q 010343 336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS- 414 (512)
Q Consensus 336 ~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 414 (512)
...++....-.-++++++++..+.|++.+.+.++..++.++.+++.||.+|++.+..+. .+..++.++.++.-....
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~--ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGC--AIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecH--HHHHHHHHHHhChHHhcCC
Confidence 33344333334455669999999999999999999999999999999999997765542 233333332222211000
Q ss_pred -----------------------c-----------------C--C-hhHHH-HHHHHHHhhhhhhhhchhhhhhhh-hcC
Q 010343 415 -----------------------H-----------------V--D-SPAMA-VLCMACSQGTDAFSQSGLYSNHQD-IAP 449 (512)
Q Consensus 415 -----------------------~-----------------~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 449 (512)
. . + ....+ +.-++.|.+..... +....+..+ .++
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~-~~~~~~i~d~~~~ 203 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF-PLGISYIDDFAKS 203 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch-hcCchhhhccCCc
Confidence 0 0 0 12223 33344444444443 444455544 556
Q ss_pred cchhhHHHHHHHHHhHHHHHHHHhhhheeecC----------------------cchhHHHHHHHHHHHHHHHHHHhc
Q 010343 450 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG----------------------SWDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 450 ~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
++++.+.|+.+....+|..+|+.++|++.+.+ +|+..|++.+++.++..+.++.+.
T Consensus 204 ~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 204 KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88999999999999999999999999987542 256667777777666655544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-07 Score=87.43 Aligned_cols=163 Identities=29% Similarity=0.519 Sum_probs=128.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhhcccCCCh--hhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q 010343 111 SAFLLCNMDRVNMSIAILPMSAEFNWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 188 (512)
...+....+........+.+..+++.+. .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 9 LAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 3344444666666777888888887666 58999999999999999999999999999998888887765555556666
Q ss_pred HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCC-cchhHHHHHHHH-hhhhHHHHHHhHHHHHhcc--cCchhHHH
Q 010343 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYS-GMYLGSVTGLAFSPFLIHR--FGWPSVFY 264 (512)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~g~~~~f~ 264 (512)
....+.+.+++.|++.|++.+...+...+++.+++++ ++|+...+.... ...+|..+++.+++.+... .+|+..|.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 5511378899999999999999999999999999977 678999999888 5888889998877777654 57888776
Q ss_pred HHHHHHHHH
Q 010343 265 SFGSLGTVW 273 (512)
Q Consensus 265 ~~~~~~~~~ 273 (512)
.........
T Consensus 169 ~~~~~~~~~ 177 (338)
T COG0477 169 LAALLGLLL 177 (338)
T ss_pred HHHHHHHHH
Confidence 665555433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-08 Score=92.49 Aligned_cols=117 Identities=19% Similarity=0.102 Sum_probs=86.7
Q ss_pred cCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhh
Q 010343 353 HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGT 432 (512)
Q Consensus 353 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
+.+....|.+-+.+++...+.+..+|.++||+||| ..+.++++..++.........+...++..=++++.+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk---------pvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~ 134 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK---------PVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIF 134 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34566789999999999999999999999999999 455555556666665555555553333333444444
Q ss_pred hhhhhchhhhhhhhh-cCcchhhHHHHHHHHHhHHHHHHHHhhhheee
Q 010343 433 DAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 479 (512)
Q Consensus 433 ~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~ 479 (512)
-+-. ....++..|+ ++++|+.+++..+...++|.++||.++|++.+
T Consensus 135 kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 135 KGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 4333 3444555554 55889999999999999999999999999988
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.2e-07 Score=90.43 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=110.3
Q ss_pred hcChHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 010343 318 LSKPPVWALIVSHFCHNWGT----FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 393 (512)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 393 (512)
+++++++..+....+..... ......++....+ +|-+ ....++.....++..++.++.|+++|.+|||
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr------ 108 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRR------ 108 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcch------
Confidence 35666665544433333222 2223344544444 6654 5677888889999999999999999999998
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHh
Q 010343 394 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAA 473 (512)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l 473 (512)
.+...+.+...+..+.....++...++....+.+...+..........+..+.+.|+...++.....-....+++.+
T Consensus 109 ---~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i 185 (599)
T PF06609_consen 109 ---YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLI 185 (599)
T ss_pred ---HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH
Confidence 44444444444444444444555444444444333333333333333444455778887777666555556678888
Q ss_pred hhheeecCcchhHHHHHHHHHHHHHHHHHHhc
Q 010343 474 TGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 474 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (512)
+..+..+.+||+.|++..+...+++++..++.
T Consensus 186 a~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 186 AQLFAAHSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88877788999999999888777766554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00053 Score=66.82 Aligned_cols=285 Identities=8% Similarity=-0.009 Sum_probs=169.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccc---CCChhhHHHHHHHHHH-HHHHHHhhhhHhHhhcCChHH
Q 010343 96 WEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF---NWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAV 171 (512)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~ 171 (512)
++-.+..+..++.+.+..++..+..+..-. +.+.+ ..+++.+.++-+...+ +..+..++.+++.+++.+.++
T Consensus 19 wpi~r~E~~kflpl~Ll~f~I~~ny~~lR~----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~v 94 (509)
T COG3202 19 WPIRRYELKKFLPLALLFFCILFNYNLLRS----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKV 94 (509)
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHH
Confidence 344445566666666666666555544333 33443 3457778888888777 677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------------------c----------ChHHHHHHHHHHhhhhhchhh-HHHHHHh
Q 010343 172 LGFGVVWWSIATALTPVAAK--------------------L----------GLPFLLVVRVFMGIGEGVAMP-AMNNILS 220 (512)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~--------------------~----------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~ 220 (512)
+......+....+++++.-. . +.|...+..++.-+-.+.... .......
T Consensus 95 F~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faN 174 (509)
T COG3202 95 FYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFAN 174 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777666665421 0 113333333333333333333 5577788
Q ss_pred cccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC----------chhHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 010343 221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG----------WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 290 (512)
Q Consensus 221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (512)
|....+|-.|.+++++.+.+++..+++.+..++.++.. .+..+.+.++.++++..+..+..+...+++..
T Consensus 175 eitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f 254 (509)
T COG3202 175 EITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLF 254 (509)
T ss_pred HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence 89988999999999999999999999999888876321 23344444444444444444433322211111
Q ss_pred CChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccc---hhhhhhhhH
Q 010343 291 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE---SGLFCVLPW 367 (512)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~---~g~~~~~~~ 367 (512)
.....++ ++.+..+-.-..+++.+.++|.++.+.+...+++.+.+.+....-.-.++.+-...+. .|-+....+
T Consensus 255 ~~~~~~k---k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tg 331 (509)
T COG3202 255 YLRAKKK---KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTG 331 (509)
T ss_pred hHHHhcc---cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHH
Confidence 0000000 0000011112346777889999999888888888777766554444444322222222 233344444
Q ss_pred HH-HHHHHHHHHHHHHHHHhc
Q 010343 368 LT-MAFSANLGGWIADTLVSK 387 (512)
Q Consensus 368 ~~-~~~~~~~~g~l~dr~~~~ 387 (512)
+. .++...+++.+.+|.|-.
T Consensus 332 vv~~v~~~~~~s~~ir~~GW~ 352 (509)
T COG3202 332 VVSLVVFLFPGSNLIRRVGWF 352 (509)
T ss_pred HHHHHHHHhhhHHHHHHhhHH
Confidence 44 455566778888888855
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-05 Score=76.49 Aligned_cols=367 Identities=10% Similarity=0.035 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcc--cCCChhhHHHHHHHHHHHHHHHHhhhhHhHh-----hcCChHHHHH-HHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLGF-GVVW 178 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~-~~~~ 178 (512)
.++.+.+++++.-.+...-.+|.+.++ -+.|..|.|...-+. ..+- .-+++.++.| |+||||..++ ...+
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~-~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLAS-YPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeee-chhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 456677888888887776678888888 788888887754321 1111 3456667666 7899987553 2333
Q ss_pred HHHHHHHHHHHh---------------h-------cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHH
Q 010343 179 WSIATALTPVAA---------------K-------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY 236 (512)
Q Consensus 179 ~~~~~~~~~~~~---------------~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (512)
.++.++..+... + .+...+....++.=+..+....+...+.-....+++++.+..-..
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 333333332211 0 011123334434445556667777888888888888887777777
Q ss_pred HhhhhHHHHHHhHHHHHhcc-------------cC---chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCC--Ch---hh
Q 010343 237 SGMYLGSVTGLAFSPFLIHR-------------FG---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL--RP---AE 295 (512)
Q Consensus 237 ~~~~~g~~~g~~~~~~l~~~-------------~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~ 295 (512)
.+.++|..++..+.-.+-+. .| ...-..+.|.+.++..+...++.+|++..+... ++ .+
T Consensus 161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~ 240 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD 240 (544)
T ss_pred hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence 77777777665554433220 11 122333455666666666666666554322110 00 00
Q ss_pred --hHhhhhccccCC---CCCCc-------hHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhh
Q 010343 296 --KKLIVSSCASKE---PVKTI-------PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC 363 (512)
Q Consensus 296 --~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~ 363 (512)
.+....+..+++ ..+.. .+..+++-|.+..+.+.....-+++..-......-+.| .|++.+..+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~ 319 (544)
T PF13000_consen 241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLV 319 (544)
T ss_pred ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHH
Confidence 000000000111 01111 23356788888888888888888888777777777888 699999887766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCch--------------------hh----HHHHHHHH--HhHHHHHHHHhhc-c-
Q 010343 364 VLPWLTMAFSANLGGWIADTLVSKGLSV--------------------TT----VRKIMQSI--GFLGPAFFLTQLS-H- 415 (512)
Q Consensus 364 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~--------------------~~----~~~~~~~~--~~~~~~~~~~~~~-~- 415 (512)
.+..-.. ++.|+++.|+.+.+.-. .+ ++.++..+ -++...+...... .
T Consensus 320 li~~P~q----ii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP 395 (544)
T PF13000_consen 320 LIDFPFQ----IILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFP 395 (544)
T ss_pred HHhhhHH----HHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCC
Confidence 5554444 44444444443221100 00 01111111 1111111111111 1
Q ss_pred --CChhH----HHHHHHHHHhhhhhhhhchhhhhhhh-hcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 416 --VDSPA----MAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 416 --~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
.+... .++..-++..+..........+...+ .+|..-|+.+-+.|+..++|+---..+.=++.|.
T Consensus 396 ~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 396 SDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 11111 12222333333344444455555544 4568899999999999999987777666666554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=90.48 Aligned_cols=184 Identities=16% Similarity=0.093 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 181 (512)
+.+.++.+.+..|.+..+......+.+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.+
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~ 371 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI 371 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence 344455555556666666667777788888888877544 4555566666777778889999999999999999999999
Q ss_pred HHHHHHHHhhc-----------ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHH
Q 010343 182 ATALTPVAAKL-----------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS 250 (512)
Q Consensus 182 ~~~~~~~~~~~-----------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 250 (512)
+.++++..... .+..+....+..........+....+.+|.+|.+-|+++.++......+...+-....
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~ 451 (513)
T KOG0254|consen 372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF 451 (513)
T ss_pred HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 98877654311 1122333333334444445667778899999999999999998888887776665555
Q ss_pred HHHhcccCchhHHHHHHHHHHHHHH-HHhhhccCCCC
Q 010343 251 PFLIHRFGWPSVFYSFGSLGTVWFT-VWLSKAHSSPA 286 (512)
Q Consensus 251 ~~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~ 286 (512)
..+.+..++...|...+..+.+... ..+...||.+.
T Consensus 452 ~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg 488 (513)
T KOG0254|consen 452 PFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKG 488 (513)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence 5555554456677776666666666 56666666543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-08 Score=93.75 Aligned_cols=181 Identities=10% Similarity=-0.020 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHH--------HHHHHHH-HHHHHHhhhhHhHhhcCChHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGL--------IQSSFFW-GYLLTQIAGGIWADTVGGKAVLGF 174 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~--------~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~ 174 (512)
+.++..+...|+.....+..+.....+.+..|+.+.+... ...+... +++.+-.+...++|+.|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5667777788888888888888888888888776555443 1111112 222355677889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHhhhhh-chhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHH
Q 010343 175 GVVWWSIATALTPVAAKL--GLPFLLVVRVFMGIGEG-VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP 251 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 251 (512)
+.+++.+..+..+...+. +-..++++..+..+... +.......+-+|.+|.+-|+..-|+..+.+-.|+++|.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 999999998888776621 12233444444443322 223444556789999999999999999999999999999999
Q ss_pred HHhc-----ccCchhHHHHHHHHHHHHHHHHhhhccCCC
Q 010343 252 FLIH-----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285 (512)
Q Consensus 252 ~l~~-----~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 285 (512)
.+.+ ..|.++.|++.+.+.++..+..++++ |++
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk 501 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP-ETK 501 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEee-ccc
Confidence 9998 78899999999998888877777665 443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-06 Score=78.97 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=124.7
Q ss_pred hhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHh-hcCChHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHh
Q 010343 128 LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-TVGGKAVLGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMG 205 (512)
Q Consensus 128 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G 205 (512)
|+=-+-||++..|..-+.+....+..++....|++.. |.++++.-.+++.+.+++..+..++.. .+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4445568999999999999999999999999999888 677788877888877777766554431 16788999999999
Q ss_pred hhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc----------cCchhHHHHHHHHHHHHHH
Q 010343 206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------FGWPSVFYSFGSLGTVWFT 275 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~g~~~~f~~~~~~~~~~~~ 275 (512)
++.|.+.....+.+.+...+++.|..+|.+.....++..+|..++|.+.|. .+|...|.+.+++.+++..
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988762 2356677777766666655
Q ss_pred HHhhh
Q 010343 276 VWLSK 280 (512)
Q Consensus 276 ~~~~~ 280 (512)
+....
T Consensus 393 ll~~l 397 (403)
T PF03209_consen 393 LLGRL 397 (403)
T ss_pred HHHHh
Confidence 54443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-07 Score=65.02 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=73.5
Q ss_pred HhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChH
Q 010343 116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLP 195 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (512)
.++++..+.+.+|.+.+|.++|..+.|++.+...+++.++.+...++.++.++++.+..+.+...+..+.+++.. +.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~--~~~ 81 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH--SFW 81 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--chH
Confidence 366788999999999999999999999999999999999999999999998889999999999999999999988 654
Q ss_pred HH
Q 010343 196 FL 197 (512)
Q Consensus 196 ~l 197 (512)
.+
T Consensus 82 ~w 83 (85)
T PF06779_consen 82 LW 83 (85)
T ss_pred HH
Confidence 43
|
Note that many members are hypothetical proteins. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.7e-07 Score=64.49 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+-..+|+.+...+...|.+|.+.++.|+|+.|+|++.++..+...++++++|.++||+++++.......++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 44556777788888999999999999999999999999999999999999999999999998877665443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=86.70 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh----cCChHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLGFGVVWW 179 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~~~ 179 (512)
.++..++.+++.....+.+...+|.+.++ .|+|..+.+.+...+.++.+++.+++|.++|| ..+|........++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35667777888888888889999998887 66999999999999999999999999999999 66666666655555
Q ss_pred HHHH-HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcch-hHHHHHHHHhhhhHHH-HHHhHHHHHhcc
Q 010343 180 SIAT-ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER-SRSLALVYSGMYLGSV-TGLAFSPFLIHR 256 (512)
Q Consensus 180 ~~~~-~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~-~g~~~~~~l~~~ 256 (512)
.+.. ..+.... +........+....+.....+.......+...++.| -...+....+.+.++. .++...+.....
T Consensus 354 ~~~g~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~ 431 (495)
T KOG2533|consen 354 AIIGAISLLAAA--VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR 431 (495)
T ss_pred HHHHHHHHHhhc--cchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence 4443 4443333 344444444555555666677778888877755444 3333334444444443 344444444556
Q ss_pred cCchhHHHHHH
Q 010343 257 FGWPSVFYSFG 267 (512)
Q Consensus 257 ~g~~~~f~~~~ 267 (512)
++|...|....
T Consensus 432 y~~~~~f~~~~ 442 (495)
T KOG2533|consen 432 YGWGAVFYMLV 442 (495)
T ss_pred hhhhhHHHHHH
Confidence 78888884433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-05 Score=63.68 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhccc
Q 010343 144 IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV 223 (512)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 223 (512)
-.++......+..++.+.+.+++|.|+.++++.++..+-.... +-+ +.+.++...++.|++.+..+.+...++.+..
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 4455666677788888999999999999999999888655544 344 6788999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHhhhhHHHHHHhHHHHHh
Q 010343 224 PVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254 (512)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 254 (512)
+++++++..++.......+.++|.++.-.+.
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888887765554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0007 Score=69.34 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=132.3
Q ss_pred chHHHHHHHHHHHHHHhhhhh-hhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-CChHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRV-NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVW 178 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 178 (512)
..|+..........+.-+... .....+.++.++++.+...+.-....+.-......+.++.++|-| ||-+.+.++.++
T Consensus 34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i 113 (571)
T KOG1237|consen 34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI 113 (571)
T ss_pred chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456555555544444444432 335567778888998888888888889888999999999999974 788888888888
Q ss_pred HHHHHHHHHHHhhc-----------------------ChHHHHHHHHHHhhhhhchhhHHHHHHhcccC---Ccc---hh
Q 010343 179 WSIATALTPVAAKL-----------------------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP---VAE---RS 229 (512)
Q Consensus 179 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~---r~ 229 (512)
..++..+..+.... ....++...-+..+|.|+.-+...++-+|-++ +++ +.
T Consensus 114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~ 193 (571)
T KOG1237|consen 114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP 193 (571)
T ss_pred HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence 77776554332200 01356677778888999999999999999997 222 23
Q ss_pred HHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHh
Q 010343 230 RSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278 (512)
Q Consensus 230 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 278 (512)
..+.++....++|..++-.+..+.-+..||.+.|.+..+..+++.++++
T Consensus 194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 194 SFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 6788899999999999988888888889999999888777766655554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00021 Score=67.28 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=87.8
Q ss_pred hhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHh
Q 010343 351 VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQ 430 (512)
Q Consensus 351 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (512)
.+|++..+++.++....+.+++...+.|.+.||+|||+ .....++......+.-.. +....+++.=++++
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~---------~cl~~cily~~scl~k~~-~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK---------ACLLFCILYSLSCLTKHS-SNYPVLLLGRVLGG 132 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH---------HHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999983 222222233333333333 33444444434444
Q ss_pred hhhhhhhchhhhh-hhh-----hcCcchhhHHHHHH-HHHhHHHHHHHHhhhheeecC--cchhHHHHHHHHHHHHHHHH
Q 010343 431 GTDAFSQSGLYSN-HQD-----IAPRYSGVLLGLSN-TAGVLAGVFGTAATGYILQHG--SWDDVFKVSVGLYLVGTAVW 501 (512)
Q Consensus 431 ~~~~~~~~~~~~~-~~~-----~~~~~~g~~~g~~~-~~~~~g~~ig~~l~g~l~~~~--g~~~~~~~~~~~~~~~~~~~ 501 (512)
..........-+. ..| .+++..+..++... ..+.+-.+....++-++.+.. |....|....++.+++.++.
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 4443333333322 222 22334555555544 233444455555555666654 44778888888888877766
Q ss_pred HHhcCC
Q 010343 502 NLFSTG 507 (512)
Q Consensus 502 ~~~~~~ 507 (512)
....++
T Consensus 213 ~~~W~E 218 (354)
T PF05631_consen 213 LKTWPE 218 (354)
T ss_pred Hhcccc
Confidence 544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.4e-05 Score=77.54 Aligned_cols=161 Identities=12% Similarity=-0.004 Sum_probs=112.9
Q ss_pred hhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcCh-HHHHHHHHH
Q 010343 125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL-PFLLVVRVF 203 (512)
Q Consensus 125 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~l 203 (512)
..++.....+|.+......+... .........+...|++|||.....+..+..++.+..++...... +...+...+
T Consensus 339 ~gl~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (521)
T KOG0255|consen 339 YGLSLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLL 415 (521)
T ss_pred HhhhhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 33455555566555444333333 44455555689999999999999999999999999988773222 245556666
Q ss_pred HhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccC
Q 010343 204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 283 (512)
..++.+..+.....+..|.+|...|..+.+.......+|.+++|.+...... ......+.+.+....+...+...+.|+
T Consensus 416 ~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpe 494 (521)
T KOG0255|consen 416 GKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPE 494 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcc
Confidence 6666666677779999999999999999999999999999999998866544 222333333466666666666566666
Q ss_pred CCCCCC
Q 010343 284 SPAEDP 289 (512)
Q Consensus 284 ~~~~~~ 289 (512)
+.....
T Consensus 495 t~~~~l 500 (521)
T KOG0255|consen 495 TKGKPL 500 (521)
T ss_pred cCCCCC
Confidence 654443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-05 Score=67.52 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=83.0
Q ss_pred HHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc--
Q 010343 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS-- 414 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 414 (512)
.+.+..|-|. +++.+|++.++...+-....++..+| ++.|.+.||+|.+.. ..+.......+.......
T Consensus 18 ~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~-------l~iG~~~~~~GY~~~~l~~~ 88 (250)
T PF06813_consen 18 TYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVV-------LLIGAVLGFVGYGLLWLAVS 88 (250)
T ss_pred ccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 4445555554 55669999999999999999998774 889999999998822 112111111111111111
Q ss_pred c---CChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec
Q 010343 415 H---VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 480 (512)
Q Consensus 415 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~ 480 (512)
. ....|.......+++...............+..|++||++.|+.-....+++.+-..+.-.+.+.
T Consensus 89 ~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 89 GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1 12333343333333333333323322333344578999999999999999998888887777766
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00017 Score=71.88 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=111.4
Q ss_pred hhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhh-HhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHh
Q 010343 127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGG-IWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG 205 (512)
Q Consensus 127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (512)
.-++...++++..+.+...+.......+++.+.. .+...+|-|++...|+....+.....+++. +.|+.+...++.+
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~ 342 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVA 342 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHH
Confidence 3446667999999999999999888899888887 777788999999999999999999999999 8888888887777
Q ss_pred hhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc
Q 010343 206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH 255 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 255 (512)
+. ....|...+.++.+.+++++|+++++......+...++|.+-+.+..
T Consensus 343 ~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 343 LA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 76 56789999999999999999999999999999999999999888764
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=56.14 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 010343 325 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 388 (512)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 388 (512)
.+-...++...+...+..++|.|+++ .|+++.++|.+.++..+..+++.+++|.++||.++++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 44556777888889999999999998 7999999999999999999999999999999999884
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00065 Score=65.15 Aligned_cols=121 Identities=9% Similarity=-0.003 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH---
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI--- 181 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~--- 181 (512)
..+..++..+-....++.+....+++.+++-.+.. .-.....+.+...+..++...+--+...|....++..+...
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il 97 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAIL 97 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455677777777777777644333 33344444444444444444444443322222222111111
Q ss_pred HHHHHHHHh-------hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcc
Q 010343 182 ATALTPVAA-------KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE 227 (512)
Q Consensus 182 ~~~~~~~~~-------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 227 (512)
....+.++. ...++..++..++.+.+.+..........++. |++.
T Consensus 98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y 149 (406)
T KOG1479|consen 98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY 149 (406)
T ss_pred HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence 111111111 11356677778888999888888888777765 3443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00025 Score=73.98 Aligned_cols=164 Identities=14% Similarity=0.044 Sum_probs=104.3
Q ss_pred HHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHH-HhcCCchhhHHHHHHHHHhHHHHHHHHhhcc
Q 010343 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 415 (512)
Q Consensus 337 ~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
++++...+..|+.+.+|++...+..++..+....-+..+++|++.|++ |+++. ..+...+...+..++....
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t-------Il~~~ii~~lG~~llai~a 75 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT-------ILYLSIVYVVGHALLSFGA 75 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHhcc
Confidence 456667778888888899999998888888888888899999999975 55421 1111111111122221111
Q ss_pred CC------hhHHHHHHHHHHhhhhhhhhchhhhhhhh-hcCc---chhhHHHHHHHHHhHHHHHHHHhhhheeec-----
Q 010343 416 VD------SPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPR---YSGVLLGLSNTAGVLAGVFGTAATGYILQH----- 480 (512)
Q Consensus 416 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~----- 480 (512)
.+ ........+.++.++.+..-+.......+ ..++ ++-..+.++....++|+.+++.+.+++.+.
T Consensus 76 ~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 76 IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG 155 (654)
T ss_pred CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 11 11112222333333333334444444433 3332 477788899999999999999999998744
Q ss_pred --CcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 481 --GSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 481 --~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
.+|..+|.+.+++++++.+++....+.
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~ 184 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIVFMAGSKM 184 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 268999999999999888877665443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=71.43 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCc---chhHHHHHHHHhh
Q 010343 170 AVLGFGVVWWSIATALTPVAAKL-------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGM 239 (512)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 239 (512)
|.+.++.++..+|.+++.++... +.+.++++.++.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56777888888888875444311 2257889999999999999999999999999765 4678889999999
Q ss_pred hhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhc
Q 010343 240 YLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 240 ~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
++|..++..+.+++-++.||.+.|.+.++..+++.+..+.-.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999888887776665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0054 Score=61.07 Aligned_cols=98 Identities=14% Similarity=-0.001 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH-HHH----h-hcChHHHHHHHHHHhhhhhchhhHHHHHHh
Q 010343 147 SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT-PVA----A-KLGLPFLLVVRVFMGIGEGVAMPAMNNILS 220 (512)
Q Consensus 147 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~----~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 220 (512)
...+...+..+..-.+..|+..|.=+..++++..+..++. .+. + ...++..++..++.|++.+.......++.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 4444455555555566666665333333433222222111 111 1 113566777788899999888888888777
Q ss_pred cccCCcchhHHHHHHHHhhhhHHHHHHhH
Q 010343 221 KWVPVAERSRSLALVYSGMYLGSVTGLAF 249 (512)
Q Consensus 221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 249 (512)
. +|++ .++.+..+.+++++++.++
T Consensus 133 ~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 133 V-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred c-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 4 4443 4455555666666555444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00087 Score=64.85 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH--HHHH-
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW--SIAT- 183 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~~~~- 183 (512)
+-+++.++..++......+.+.. -.+..-...+.-+...+|.+|-.++.--...+ |+ |++.+.+.+-. .+..
T Consensus 250 iPL~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~ 324 (402)
T PF02487_consen 250 IPLFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLL 324 (402)
T ss_pred HHHHHHHHHHHHHHhchHHHhcC-CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHH
Confidence 34555666665554444433221 12233335667777777877766665433221 33 44433332222 2211
Q ss_pred --HHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh
Q 010343 184 --ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254 (512)
Q Consensus 184 --~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 254 (512)
...-+.+ +.|.+++..+..|+..|..+......+.+..++++|..++|....+.++|..++.+++-.+-
T Consensus 325 l~s~~~fip--si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 325 LQSWYRFIP--SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHhh--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2223345 67888899999999999999999999999999999999999999999999999998876653
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00039 Score=68.65 Aligned_cols=179 Identities=13% Similarity=0.053 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHh-cCCchhhHHHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQ-VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVS-KGLSVTTVRKIM 398 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~-~~~~~~~~~~~~ 398 (512)
+.++...+..++.....+.+.+-.-.|+++ +.+.+.+..|++.+...++..+++++.|++..|.+. |+++..+
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s----- 108 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS----- 108 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH-----
Confidence 345566666666665555555555566665 357788889999999999999999999999999885 3332211
Q ss_pred HHHHhHHHHHHHHhhcc-CC-hhHHHHHH-HHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 399 QSIGFLGPAFFLTQLSH-VD-SPAMAVLC-MACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAAT 474 (512)
Q Consensus 399 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~ 474 (512)
.+..+..-+..+.+.. .+ ..+++.+. ++.|.+.+.. ...-.+. ....+++|.++++.......+|..+||.+.
T Consensus 109 -~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~--a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q 185 (488)
T KOG2325|consen 109 -FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF--AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ 185 (488)
T ss_pred -HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH--HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence 1111111122212222 22 33333333 3333333322 2223333 333457788888877776666666666654
Q ss_pred hhee----ec---------CcchhHHHHHHHHHHHHHHHHHHhcCC
Q 010343 475 GYIL----QH---------GSWDDVFKVSVGLYLVGTAVWNLFSTG 507 (512)
Q Consensus 475 g~l~----~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (512)
..+. +. .-|...-++.+++.++.+++.....++
T Consensus 186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 4332 21 236677778888877777776665544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00024 Score=64.53 Aligned_cols=320 Identities=12% Similarity=0.082 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHh
Q 010343 141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS 220 (512)
Q Consensus 141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 220 (512)
.|.+.-.-.+...+..+.+..+.||+.--.-..+..++.+.++++.+++. +.++-+.+..+..++.|.......++-+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~lss 141 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALSS 141 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhhc
Confidence 56666667778888888899999997654445556667788888888888 8888888888888888766655555444
Q ss_pred cccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc--cCchhHHHHHHHHHHHHHHHHhhhccCCCCCC-CCCChhhhH
Q 010343 221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQLRPAEKK 297 (512)
Q Consensus 221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 297 (512)
. +++ ...+-+..+.+.++.+|..-...+.+. ++.+.+.++...+-++.....++..++++... +...+....
T Consensus 142 ~-Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~ 216 (409)
T KOG3880|consen 142 R-YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEI 216 (409)
T ss_pred c-CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCcccee
Confidence 3 322 234456666666777777666666653 45778888877777666666666555544332 111111110
Q ss_pred h----hhhccccCC--CCCCchHHH-hhcChHHHHHHHHHHHHHHHHHHHHHhhHH-HHHH-hhcCCc---cchhhhhhh
Q 010343 298 L----IVSSCASKE--PVKTIPWGL-ILSKPPVWALIVSHFCHNWGTFILLTWMPT-YYNQ-VLHFNL---TESGLFCVL 365 (512)
Q Consensus 298 ~----~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~-~~g~~~---~~~g~~~~~ 365 (512)
. ...+..+++ +....+.++ +.+-+++....+-.+..++..+.++.-+.. .+-+ ..|.+. .+.-+....
T Consensus 217 ~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvl 296 (409)
T KOG3880|consen 217 IPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVL 296 (409)
T ss_pred ccCCCCcccccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhhee
Confidence 0 000011111 111222222 122223333444445555555555543322 2211 123322 234466666
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH--hHHHHHHHHhhccCChhHHHHHHHHH-Hhhhhhhhhchhhh
Q 010343 366 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG--FLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYS 442 (512)
Q Consensus 366 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 442 (512)
+.+|..+.+--.-.. +-+. ...+...- -++..+.-......++.+.+.+.++. |..+++.+......
T Consensus 297 YQlGVFiSRSS~~~~-----~~p~-----l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~ 366 (409)
T KOG3880|consen 297 YQLGVFISRSSINLF-----TMPY-----LWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN 366 (409)
T ss_pred eeeeEEEEeccceEE-----echH-----HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 666554443221111 1000 01111111 11222222334455666666555555 44445555566667
Q ss_pred hhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhhe
Q 010343 443 NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYI 477 (512)
Q Consensus 443 ~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l 477 (512)
+..+.+|++|--+++.....-.+|..++.+++=.+
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 77889999999999998888888877776665443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0061 Score=62.18 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=93.9
Q ss_pred HHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHH-HHHHHHH-HHHHHHHHHhh
Q 010343 115 LCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWS-IATALTPVAAK 191 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~-~~~~~~~~~~~ 191 (512)
+.++....+-..... +..-+|-+..+.+.+.+++.++..+|+.+++++.++.-++...+ ++..+.+ ++..+......
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~ 104 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFA 104 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333 44457889999999999999999999999998874432222211 1111111 11111111110
Q ss_pred c--Ch-HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh-cccCchhHHHHHH
Q 010343 192 L--GL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFGWPSVFYSFG 267 (512)
Q Consensus 192 ~--~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g~~~~f~~~~ 267 (512)
. .. ..++...++.++..|...|....+..+.. .++-++..|.......+|+++|.++.+++. ..+|-....++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 105 FQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 0 11 22334455677888888888777666543 234577889999999999999999988765 4677555554444
Q ss_pred HHHHHHH
Q 010343 268 SLGTVWF 274 (512)
Q Consensus 268 ~~~~~~~ 274 (512)
.+.++..
T Consensus 184 ~l~~~~a 190 (521)
T PRK03612 184 SLNLLAA 190 (521)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=58.87 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=56.2
Q ss_pred cchhHHHHHHHHhhhhHHHHHHhHHHHH---h--cccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhh
Q 010343 226 AERSRSLALVYSGMYLGSVTGLAFSPFL---I--HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV 300 (512)
Q Consensus 226 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~--~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (512)
++|+....+...+.++|.++.....-.- . ..-.|++.+.+.+++.++.+++..++-.+-+...+++++ ++.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~-~k~--- 77 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQ-EKE--- 77 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc-ccc---
Confidence 4556666666677777776653332111 1 123499999999888888777776664432211111011 000
Q ss_pred hccccCCCCCCchHHHhhcChHHHHHHHHHHHH
Q 010343 301 SSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333 (512)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (512)
+....+.....+.+|++..|...+.+...
T Consensus 78 ----~~~~~~~~s~~~~LK~K~tw~w~~~Yg~w 106 (267)
T PF07672_consen 78 ----NSTLSKKPSYKSILKEKETWKWILIYGIW 106 (267)
T ss_pred ----cccccccchHHHHHccchHHHHHHHHHHH
Confidence 00111235678899999998877665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=65.37 Aligned_cols=158 Identities=19% Similarity=0.149 Sum_probs=95.7
Q ss_pred HhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHH---hcCCchhhHHHHHHHHHhHHH--HHHHHhhcc-
Q 010343 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV---SKGLSVTTVRKIMQSIGFLGP--AFFLTQLSH- 415 (512)
Q Consensus 342 ~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~- 415 (512)
.-...|+++.+|+++.+...+.....+-. ...++.|.++|-+. .|| +..++..+.+.. ...+.....
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr------~~Y~~i~~~~~~~~~~~~~~~~~~ 82 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRR------KPYMIIGWLLGAVSALVLALLPAS 82 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcc------hHHHHHHHHHHHHHHHHHHhcccc
Confidence 33456778889999999888777666655 44578899999874 332 222322222221 122222222
Q ss_pred CChhHHHHHHHHHHhhhhhhhhchhhhhh---hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHH
Q 010343 416 VDSPAMAVLCMACSQGTDAFSQSGLYSNH---QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG 492 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~ 492 (512)
........+++.+............-... .+..|+.+|...+....+..+|+.++..+.|.+.+..+++..|.+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~ 162 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA 162 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence 12222233333333332333323222222 222344488999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHhcC
Q 010343 493 LYLVGTAVWNLFST 506 (512)
Q Consensus 493 ~~~~~~~~~~~~~~ 506 (512)
+.++..+..+.+..
T Consensus 163 ~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 163 LPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHhhh
Confidence 77766555444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=70.36 Aligned_cols=182 Identities=10% Similarity=-0.071 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCC-hHHHHHHHHHHHHH
Q 010343 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIA 182 (512)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~ 182 (512)
+.++++.+++.+.....+.....+......-|.+....|++..+..++.++++...|.+.||.+. |....+......++
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555667777899999999999999999999999999874 44455554444444
Q ss_pred HHHHHHHhh--cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC--
Q 010343 183 TALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-- 258 (512)
Q Consensus 183 ~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-- 258 (512)
......... ...+.++....+.|++.....|...-+-.|..-|..-+...|+.+..+++-+++-..+-+...+..+
T Consensus 346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~ 425 (480)
T KOG2563|consen 346 TLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPP 425 (480)
T ss_pred HHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCC
Confidence 222221110 1335666777788888888999888888887766666778888888888888888888888877665
Q ss_pred --chhHHHHHHHHHHHHHHHHhhhccCCC
Q 010343 259 --WPSVFYSFGSLGTVWFTVWLSKAHSSP 285 (512)
Q Consensus 259 --~~~~f~~~~~~~~~~~~~~~~~~~~~~ 285 (512)
+...-+......++..++..+++++.+
T Consensus 426 ~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 426 GNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred CCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 443334444444555555555555543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0065 Score=61.98 Aligned_cols=168 Identities=14% Similarity=0.048 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHH
Q 010343 327 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP 406 (512)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 406 (512)
.+..++.+++...+.....-.+.-.+|.+....+.+.+++.++..+|+.+++++.++..++. ...-+.++++..
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~------~~~e~~i~l~~~ 93 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF------VAVELLLALLGG 93 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHHHH
Confidence 33444445555555555555566667888888999999999999999988888764433220 001111111111
Q ss_pred HHH---HHhhccCC-hhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheee-cC
Q 010343 407 AFF---LTQLSHVD-SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HG 481 (512)
Q Consensus 407 ~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~-~~ 481 (512)
... ........ .........+......+...|...-+......++.|+..|-.+.+..+|+.+|.++.|++.- ..
T Consensus 94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l 173 (521)
T PRK03612 94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL 173 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc
Confidence 111 11111100 11111111222223333334444444443333456778888899999999999999997654 67
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 010343 482 SWDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 482 g~~~~~~~~~~~~~~~~~~ 500 (512)
|.....++.+.+.+++.++
T Consensus 174 G~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 174 GLIRTAALTGSLNLLAALV 192 (521)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 7765555555554444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0052 Score=60.59 Aligned_cols=130 Identities=16% Similarity=0.070 Sum_probs=99.4
Q ss_pred hhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHH---HHhh-----cCh
Q 010343 123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---VAAK-----LGL 194 (512)
Q Consensus 123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~-----~~~ 194 (512)
+...+..+....|+++..+|..-+...+..+.+.+...++.+|+|..|.-.++.........++. +.+. .+.
T Consensus 277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA 356 (432)
T ss_pred CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 34455555666699999999999999999999999999999999998887777665444333332 2221 133
Q ss_pred HHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHH
Q 010343 195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252 (512)
Q Consensus 195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 252 (512)
..++.+-++.=+|.=.+.....-++.|..|+++||...|...+..++-..+-..++-.
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566666677777888899999999999999999999999999888877666543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.029 Score=56.16 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcC-----CccchhhhhhhhHHHHHHH-HHHHHHHHHHHHhcCCchhhH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF-----NLTESGLFCVLPWLTMAFS-ANLGGWIADTLVSKGLSVTTV 394 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~-----~~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~~~~~~~~~~~ 394 (512)
|++....+..++..+.++.. --++|.++. +.+...++.....+...+. .++.+++++|+++++......
T Consensus 7 ~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 34555555555554444333 234555554 3356777777666655555 788999999999996543211
Q ss_pred HHHHHHHHhHHHHHHHHhhccCCh--------------------------hHHHHHHHHHHhhhhhhhhc-hhhhhhhhh
Q 010343 395 RKIMQSIGFLGPAFFLTQLSHVDS--------------------------PAMAVLCMACSQGTDAFSQS-GLYSNHQDI 447 (512)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 447 (512)
. ........+........+. .|...++.+..-..+....+ ..+...++.
T Consensus 82 ~----~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi 157 (472)
T TIGR00769 82 S----PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI 157 (472)
T ss_pred H----HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1111111111111111111 23333444444444445554 667777777
Q ss_pred cC-cchhhHHHHHHHHHhHHHHHHHHhhhhee
Q 010343 448 AP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL 478 (512)
Q Consensus 448 ~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~ 478 (512)
.. ++..|..++.....++|..+++.+..++.
T Consensus 158 ~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 158 TTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 78999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.12 Score=47.93 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhccc
Q 010343 150 WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV 223 (512)
Q Consensus 150 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 223 (512)
+..+...++.+.+..++|-|+.+.++..........-. -+ .+..++-.....|++.+..+..--+++++.-
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl-~p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL-EP--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-ch--hHHhhccHHHhhccccccccccCcceecHHH
Confidence 34445566666999999999999888776655433221 22 4677888899999999988877666655443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.044 Score=45.81 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=68.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhh
Q 010343 362 FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLY 441 (512)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
-.++......+..++.+.+.+++|.| +.+.++.+...+........+.+..+....+.|.+..... ....
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW-~aqg 111 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLW-TAQG 111 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhh-Hhhh
Confidence 34555566677788888999999988 4555555555554444444444444444555555555444 4444
Q ss_pred hhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhhee
Q 010343 442 SNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL 478 (512)
Q Consensus 442 ~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~ 478 (512)
.+. +...++.+++..|+.-.+.+.+..+|..+.-.+.
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4444467999999988888888888877655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.027 Score=54.77 Aligned_cols=161 Identities=8% Similarity=-0.090 Sum_probs=100.1
Q ss_pred HHHHhhHHHHHHh-hcCCccchh-hhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccC
Q 010343 339 ILLTWMPTYYNQV-LHFNLTESG-LFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 416 (512)
Q Consensus 339 ~~~~~~~~~l~~~-~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (512)
....++..|+.+. .|++.++.. -++-+..-..+...+....+.|.++.|. ++.+..+.......++...
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp---------viil~~~~~i~t~~lll~~ 91 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP---------VIILQALSYIITWLLLLFG 91 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH---------HHHHHHHHHHHHHHHHHHH
Confidence 3457888888876 788888765 3444555566777778889999999883 3333333322222222233
Q ss_pred ChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeec--CcchhHHHHHHHHH
Q 010343 417 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH--GSWDDVFKVSVGLY 494 (512)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~--~g~~~~~~~~~~~~ 494 (512)
+.....-+.-+..+...+.-..-...+-..+++++--++.+......-+|..++..++-.+... .+|.....+..+..
T Consensus 92 ~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~ 171 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASV 171 (412)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4444333333333333333333333344567778888888998888888888888888877763 56777777777766
Q ss_pred HHHHHHHHHhcCCc
Q 010343 495 LVGTAVWNLFSTGE 508 (512)
Q Consensus 495 ~~~~~~~~~~~~~~ 508 (512)
.++.++.+++.+.+
T Consensus 172 ~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 172 SLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHcCCCC
Confidence 77766666655443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00035 Score=61.73 Aligned_cols=216 Identities=11% Similarity=0.116 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHh---------HhhcCChHHHH-HHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW---------ADTVGGKAVLG-FGV 176 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---------~dr~g~r~~~~-~~~ 176 (512)
....++.+.+....+.+...+-.+.++.|.++....+++-+..+.-.+..++.|.+ .||+|||+..- ++.
T Consensus 20 f~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~wh~~gt 99 (412)
T KOG4830|consen 20 FAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSWHLIGT 99 (412)
T ss_pred eeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeeeeeccc
Confidence 34456777888888888888888889999999999999999999999998888754 46899887542 222
Q ss_pred HHHHHHHH-HHHH--------Hh--hcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHH
Q 010343 177 VWWSIATA-LTPV--------AA--KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT 245 (512)
Q Consensus 177 ~~~~~~~~-~~~~--------~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 245 (512)
++..++.- ...+ .. ..|..++.+..++.|++.+...-...+.
T Consensus 100 ~lVslSf~~ifg~a~iF~~~~~~s~vanlglyaialvVFgv~~A~~ke~tea~--------------------------- 152 (412)
T KOG4830|consen 100 VLVSLSFPMIFGFAKIFLCKSTTSEVANLGLYAIALVVFGVGWASVKESTEAL--------------------------- 152 (412)
T ss_pred EEEEEechhhcCceeEEeeccHHHHHHHhHHHHHHhheeeeeeecccccHHHH---------------------------
Confidence 22111110 0000 00 0012222233333333332211110000
Q ss_pred HHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHH
Q 010343 246 GLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWA 325 (512)
Q Consensus 246 g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (512)
+|+.-+....+++...++.+.+.+|+. ..-..++.+.. +.+|..-+++-.++.
T Consensus 153 -------------~R~~~~~~v~lG~~~~~vF~~~TrEP~-~~~~~~~s~~~-------------Rm~W~~WF~~v~~YQ 205 (412)
T KOG4830|consen 153 -------------IRLAGWLVVVLGITVAFVFYAFTREPT-NSFSSDASELV-------------RMHWTSWFGHVQFYQ 205 (412)
T ss_pred -------------HHHhhhheeeeceeEEEEEeecccCcc-cccCcchhhhh-------------cccchhhhhhhHHHH
Confidence 133333322232222222222333322 11111121211 456777888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHH
Q 010343 326 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANL 376 (512)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 376 (512)
..+.+.+.-...+.-..+++.|..+.++++....+++-.+..+.....+.+
T Consensus 206 iAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v 256 (412)
T KOG4830|consen 206 IALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV 256 (412)
T ss_pred HHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence 999998888888888899999988888887777777666666655555444
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.031 Score=55.69 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHhHhhcCCh-HHHHHHHHHHHHHHHHHHHHhh----------cChHHHHHHHHHHhhhh
Q 010343 140 TVGLIQSSFFWGYLLTQIAGGIWADTVGGK-AVLGFGVVWWSIATALTPVAAK----------LGLPFLLVVRVFMGIGE 208 (512)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~G~~~ 208 (512)
..-+...++.++-.+|..+..+.. .-++| +.+.+..+...+..-++.++.. .+-+..++..++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 334566677888888877554431 11222 2344444444443333322211 14466777899999999
Q ss_pred hchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHH
Q 010343 209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252 (512)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 252 (512)
|-.......+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888876543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00041 Score=70.94 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHH-HHHHHHhhhhHhHhhcC--ChHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVG--GKAVLGFGV 176 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~ 176 (512)
.+...+....++.....+....+..+.|- +..+|+.++.+++++.++..+ +.+++.+++|++..|+. .|..+....
T Consensus 302 l~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~ 381 (539)
T PF03137_consen 302 LTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI 381 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence 34566777777777777778788888877 556899999999999876665 56688899999999975 344444333
Q ss_pred HHHHHHHHH---HHHH--h---------h--------------------------------------cChHHHHHHHHHH
Q 010343 177 VWWSIATAL---TPVA--A---------K--------------------------------------LGLPFLLVVRVFM 204 (512)
Q Consensus 177 ~~~~~~~~~---~~~~--~---------~--------------------------------------~~~~~l~~~~~l~ 204 (512)
+...++.++ ..+. + . ..+..+++..++.
T Consensus 382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~ 461 (539)
T PF03137_consen 382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL 461 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence 333333222 1000 0 0 0123444555555
Q ss_pred hhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhh-hHHHHHHhHHHHHhcc
Q 010343 205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY-LGSVTGLAFSPFLIHR 256 (512)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~ 256 (512)
-+..+........++-+.+++++|+.++|+...... +|.+-||++.|.+.|.
T Consensus 462 ~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 462 SFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 555555666666777788999999999999877665 6889999999999885
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=42.56 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 010343 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 387 (512)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 387 (512)
+++-+.+...+|...+| .++|..+.|++.+.+.++.++|.+...++.++.+.+
T Consensus 5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~ 57 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR 57 (85)
T ss_pred hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 34556677788888777 799999999999999999999999999988875544
|
Note that many members are hypothetical proteins. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.14 Score=47.98 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=88.0
Q ss_pred HHHHHHHHhhHHHHHHhhcCCc--cchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHh
Q 010343 335 WGTFILLTWMPTYYNQVLHFNL--TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ 412 (512)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (512)
..........+.+..+ .+.+. ...++..+...+...++.++.|++.||.|+|+. ................
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~~~~~~~~ 87 (338)
T COG0477 16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV-------LIIGLLLFLLGTLLLA 87 (338)
T ss_pred HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHH-------HHHHHHHHHHHHHHHH
Confidence 3344444556666655 34444 468889999999999999999999999987732 2222211111111111
Q ss_pred hccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcC--cchhhHHHHHHH-HHhHHHHHHHHhhhheeec--CcchhHH
Q 010343 413 LSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--RYSGVLLGLSNT-AGVLAGVFGTAATGYILQH--GSWDDVF 487 (512)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~-~~~~g~~ig~~l~g~l~~~--~g~~~~~ 487 (512)
.......+.........+...+...+.......+..+ ++++...+.... ...++..+++.+.+.+.+. .+|+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 88 LAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111123333333332233333444555555555555 478888888888 5778888888777777655 5666655
Q ss_pred HHHHHHH
Q 010343 488 KVSVGLY 494 (512)
Q Consensus 488 ~~~~~~~ 494 (512)
.......
T Consensus 168 ~~~~~~~ 174 (338)
T COG0477 168 LLAALLG 174 (338)
T ss_pred HHHHHHH
Confidence 5554444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=50.73 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh---hhcccCCChhh-HHHHHHHHHHHHHHHHhhhhHhHh---hcCChHHHHHHHHHHH
Q 010343 108 LCFSAFLLCNMDRVNMSIAILP---MSAEFNWNPAT-VGLIQSSFFWGYLLTQIAGGIWAD---TVGGKAVLGFGVVWWS 180 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~ 180 (512)
.+....+..+.....+....|. .....+.+... .++..-...++..++..+.+.+.+ |+|+++.+.++..+..
T Consensus 244 ~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~ 323 (461)
T KOG3098|consen 244 LLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHL 323 (461)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHH
Confidence 3344444555555555555554 22233333332 333333445555566666666665 4788999888888887
Q ss_pred HHHHHHHHHhhc----------------ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHH
Q 010343 181 IATALTPVAAKL----------------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV 244 (512)
Q Consensus 181 ~~~~~~~~~~~~----------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 244 (512)
+..++..+.... +....++..++.|++.+......+.++.+.+ +++|..+.++...-..++..
T Consensus 324 ~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~ 402 (461)
T KOG3098|consen 324 IGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASC 402 (461)
T ss_pred HHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH
Confidence 777766443210 3457788899999999999999999999999 78899999998888888877
Q ss_pred HHHhHHHHH
Q 010343 245 TGLAFSPFL 253 (512)
Q Consensus 245 ~g~~~~~~l 253 (512)
++-......
T Consensus 403 v~~f~~~~~ 411 (461)
T KOG3098|consen 403 VAFFFSPYL 411 (461)
T ss_pred HHhhhhhhh
Confidence 765555443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.021 Score=55.43 Aligned_cols=149 Identities=11% Similarity=0.041 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHH----HHhcCCchhhHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT----LVSKGLSVTTVRK 396 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~ 396 (512)
+.+.......+...+++..=..++++|+++ .|.+....+.+....-+.+++.+++.|..+|| +||||..+..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~--- 107 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILA--- 107 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHH---
Confidence 344555556666677777778999999999 79999999999999999999999999999995 6788754321
Q ss_pred HHHHHHhHHHH-HHHHhh--------ccCChh---HHHHHHHHHHhhh-----hhhhhchhhhhhhhhcCcchhh-HHHH
Q 010343 397 IMQSIGFLGPA-FFLTQL--------SHVDSP---AMAVLCMACSQGT-----DAFSQSGLYSNHQDIAPRYSGV-LLGL 458 (512)
Q Consensus 397 ~~~~~~~~~~~-~~~~~~--------~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~-~~g~ 458 (512)
.+..... +.++.. ...... ...+..+.++.-. .....+.-..+.....++++.+ +++.
T Consensus 108 ----~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~ 183 (498)
T KOG0637|consen 108 ----GSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSV 183 (498)
T ss_pred ----hhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchh
Confidence 1111111 111111 111111 1222222222221 1222222223333334444444 8999
Q ss_pred HHHHHhHHHHHHHHhhhhe
Q 010343 459 SNTAGVLAGVFGTAATGYI 477 (512)
Q Consensus 459 ~~~~~~~g~~ig~~l~g~l 477 (512)
+..+..+|+.+|-.++++.
T Consensus 184 f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 184 FSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhcceeeeeccccc
Confidence 9999999998887777643
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.2 Score=47.48 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCC-hhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWN-PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.+.+.+++++...+.-++......++.+++.+ ....+.-..+-.....+..++.|...|+..|+|++...+.+.-++..
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~ 108 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI 108 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence 45667788888888888888888888887754 34444444555666778888999999999999988766554333322
Q ss_pred ------HHHHHhh----cChHHHHHHHHHHhhhhhchh--hHHHHH--Hhccc----CCcchhH---HHHHHHHhhhhHH
Q 010343 185 ------LTPVAAK----LGLPFLLVVRVFMGIGEGVAM--PAMNNI--LSKWV----PVAERSR---SLALVYSGMYLGS 243 (512)
Q Consensus 185 ------~~~~~~~----~~~~~l~~~~~l~G~~~~~~~--~~~~~~--~~~~~----~~~~r~~---~~~~~~~~~~~g~ 243 (512)
+..+..+ .+.+.+..+.++.-...+... ....++ -.||. ..+.+.. .++.....-....
T Consensus 109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn 188 (503)
T KOG2601|consen 109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN 188 (503)
T ss_pred HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence 2222221 134444444444433322111 111111 12332 2333333 3466677777888
Q ss_pred HHHHhHHHHHhcccCchhHHHHHHHHHHH
Q 010343 244 VTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272 (512)
Q Consensus 244 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 272 (512)
.+.|.+.|.+....+-|..-...++-.++
T Consensus 189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 189 LLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred chhhhhhcccceeechhhhhhhhHHHHHH
Confidence 99999999999988887755555554444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.11 Score=54.32 Aligned_cols=186 Identities=13% Similarity=0.018 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 400 (512)
+.+..++....+......++....-.-++++++++..+.|++.+.+-++..+...+..++..|..|-++.-.+. .++.
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~--~~m~ 173 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGL--VLMG 173 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeech--hHHH
Confidence 33444433344444444455555556677889999999999999999999999999999998887765544332 3333
Q ss_pred HHhHHHHHHHHhhc---------------c---------------------------C-Ch-hH-HHHHHHHHHhhhhhh
Q 010343 401 IGFLGPAFFLTQLS---------------H---------------------------V-DS-PA-MAVLCMACSQGTDAF 435 (512)
Q Consensus 401 ~~~~~~~~~~~~~~---------------~---------------------------~-~~-~~-~~~~~~~~~~~~~~~ 435 (512)
++.++..+--.... . . +. ++ ++++.-++.+.+...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 33333222111100 0 0 00 12 222222233333333
Q ss_pred hhchhhhhhhhhc-CcchhhHHHHHHHHHhHHHHHHHHhhhheeec-------------------CcchhHHHHHHHHHH
Q 010343 436 SQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-------------------GSWDDVFKVSVGLYL 495 (512)
Q Consensus 436 ~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~-------------------~g~~~~~~~~~~~~~ 495 (512)
..+.-..++.+.. +++.....|+..++..+|-++|-++++++.+. +-|...|++++.+.+
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 4445555665544 46889999999999999999998888887543 125566777888888
Q ss_pred HHHHHHHHhcCCc
Q 010343 496 VGTAVWNLFSTGE 508 (512)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (512)
+..+.++.+.++.
T Consensus 334 ~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 334 FSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHhCcccC
Confidence 8877777776543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.0056 Score=58.23 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHh---h--------cChHHHHHHHHHHhhhhhch
Q 010343 143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA---K--------LGLPFLLVVRVFMGIGEGVA 211 (512)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~l~~~~~l~G~~~~~~ 211 (512)
....++.++-.+|..+.++..-+..+++.+.+..+...+...++.++. . .+-+..++..++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 346678888888888877643221133333344333333322222221 0 03466777899999999999
Q ss_pred hhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHH
Q 010343 212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS 250 (512)
Q Consensus 212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 250 (512)
......+.++..++++|..+-.+......+|..+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888888888777665
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.16 Score=49.93 Aligned_cols=88 Identities=11% Similarity=0.008 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhhhhhhhchhhhhhhhhcC---cchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHH
Q 010343 420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLV 496 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~ 496 (512)
...+.+.+++.+.++.=+.......++.++ +++.+.+.++....++|..+++.+.+++.++.||...|.+.++..++
T Consensus 35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~ 114 (372)
T PF00854_consen 35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL 114 (372)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence 344444444555444444333333343433 35788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 010343 497 GTAVWNLFSTG 507 (512)
Q Consensus 497 ~~~~~~~~~~~ 507 (512)
+.+.+..-+++
T Consensus 115 ~~~~f~~~~~~ 125 (372)
T PF00854_consen 115 ALIVFLSGRKR 125 (372)
T ss_dssp HHHHHHCCCCT
T ss_pred HHHHHHhCCcC
Confidence 88876655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.0092 Score=56.76 Aligned_cols=113 Identities=9% Similarity=0.029 Sum_probs=1.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-HhcCCchhhHHHHHHHHHhHHHHHHH-----HhhccCChhHHHHHHHHHHhhhhh
Q 010343 361 LFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTTVRKIMQSIGFLGPAFFL-----TQLSHVDSPAMAVLCMACSQGTDA 434 (512)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 434 (512)
..+..++++-.+|+.+.++..-+. .+|.+......+.+. +-+...+-.- ......+..+.++..++++...+-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 456788999999999888643221 222221111111111 1111110000 000111223333334444444444
Q ss_pred hhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 435 FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT 474 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~ 474 (512)
.....+....+.++++++..+-.+......+|-.+|..++
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --HHHH----------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566677777766666666677776666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.61 Score=42.25 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 010343 346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL 389 (512)
Q Consensus 346 ~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 389 (512)
.|+.+.+|+...++|.++.......++...+.|-+.||.|||+-
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra 104 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA 104 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc
Confidence 34556689999999999888888888888899999999999964
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.59 E-value=7.2 Score=38.09 Aligned_cols=179 Identities=13% Similarity=0.042 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 399 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 399 (512)
+-..+.+++........+..+.+..+.|.++..+.+. .-.+.....+.+.+..++...+--|...|..... +..+.
T Consensus 17 ~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~--~~~l~ 92 (406)
T KOG1479|consen 17 NLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRV--GYLLS 92 (406)
T ss_pred ccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3344555555555556677777777777766444443 4444455555555555555544444433311111 11111
Q ss_pred HHHhHHHHHHHHhh--c---cCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhh
Q 010343 400 SIGFLGPAFFLTQL--S---HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT 474 (512)
Q Consensus 400 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~ 474 (512)
...++....+.+.. . .....+..........+..+.............|+|.....++=.+.++.+.+..--..-
T Consensus 93 ~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tk 172 (406)
T KOG1479|consen 93 LIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTK 172 (406)
T ss_pred HHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHH
Confidence 11111111111111 1 112233344445555556666677777788888888655444443444433333322222
Q ss_pred hheeec-CcchhHHHHHHHHHHHHHHHHH
Q 010343 475 GYILQH-GSWDDVFKVSVGLYLVGTAVWN 502 (512)
Q Consensus 475 g~l~~~-~g~~~~~~~~~~~~~~~~~~~~ 502 (512)
...-|. .+-..-|.+..++.+++.+++.
T Consensus 173 a~~~~~~~sA~~yF~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 173 AAFSDSRTSALIYFITSTVILLLCFVLYL 201 (406)
T ss_pred HhcCCCCceeehhHHHHHHHHHHHHHHHH
Confidence 222222 3333445555566666666655
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.05 E-value=4.4 Score=42.01 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHh
Q 010343 325 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK-GLSVTTVRKIMQSIGF 403 (512)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~~ 403 (512)
..+....+-..++.++...+-.|+.+.++.+...+.-....+........+++++++|-+--| +....+ ..+..+++
T Consensus 41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~--s~i~~~G~ 118 (571)
T KOG1237|consen 41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIG--SLISLLGL 118 (571)
T ss_pred HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHH
Confidence 344444555566666677788888888898887777777777777778888899999976444 211111 11111111
Q ss_pred HHHHHHHHhhcc---------C----C--hh----HHHHHHHHHHhhhhhhhhchhhhhh-hhhc---C-c--chhhHHH
Q 010343 404 LGPAFFLTQLSH---------V----D--SP----AMAVLCMACSQGTDAFSQSGLYSNH-QDIA---P-R--YSGVLLG 457 (512)
Q Consensus 404 ~~~~~~~~~~~~---------~----~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~-~--~~g~~~g 457 (512)
.+.......... . + .. .+...+.....+.++.- +...... .+.+ | + ....-+.
T Consensus 119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r-~~~~~fGadQfd~~~~~~~~~~~~fFn 197 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR-PCLLAFGADQFDELDPVEVKGIPSFFN 197 (571)
T ss_pred HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC-CcchhhcccccCccCcchhhCcccchh
Confidence 111111111100 0 0 10 11112222222223222 3333332 3333 2 2 3457888
Q ss_pred HHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 458 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 458 ~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
++....++|..++-.+.-++-+..||...|.+..++.+++.++++...+
T Consensus 198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~ 246 (571)
T KOG1237|consen 198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFP 246 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCce
Confidence 9999999999999999999989999999999999998888877665443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.80 E-value=4.7 Score=38.85 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHH-----HHHhcCCchhh
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD-----TLVSKGLSVTT 393 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~~~~~ 393 (512)
+++..++..+.+.+....... .+|..++. .|.|-...+..-....= .---+++..+.| |+||||.++..
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeee
Confidence 455566666666665555444 88888885 57776665554333221 112345566666 99999765543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.63 E-value=2.6 Score=42.04 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchh
Q 010343 196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261 (512)
Q Consensus 196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 261 (512)
.+++..++..+..-..+.+..+.-+++.+|.-=|+.|.+.++..++|+.--..+.-++.|.+.++.
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~ 472 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT 472 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence 344556777777778888999999999999999999999999999998776666666666655543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.42 E-value=14 Score=35.13 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=75.4
Q ss_pred hhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHH----HHHHHHHH-HHHHHHHHHh--hcChHH
Q 010343 125 IAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL----GFGVVWWS-IATALTPVAA--KLGLPF 196 (512)
Q Consensus 125 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~~~~-~~~~~~~~~~--~~~~~~ 196 (512)
..+..+... +|-+--|.+.+.+.|.....+++...-++.|.--.-+.+ +++++.-. ...+...|+. ..+-+.
T Consensus 28 lal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~V 107 (508)
T COG4262 28 LALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLV 107 (508)
T ss_pred HHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHH
Confidence 333344443 466778899999999999999888888777753332221 12222111 1111112332 114577
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHH
Q 010343 197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253 (512)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 253 (512)
+++.-++.|.-.|.-.|..+.++.+.. ++.....+.....-.+|...+.++..++
T Consensus 108 ly~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~l 162 (508)
T COG4262 108 LYALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFL 162 (508)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHH
Confidence 888899999999999999999988733 2222223333334666666666655544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.51 Score=43.62 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCCh-hhHHHHHHHHHHHHHHHHhhhhHhHhhc-CChHH-----HHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNP-ATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAV-----LGFGVV 177 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~-----~~~~~~ 177 (512)
++-++..++..++.+......+-. =.+.+..+. .|.-|....|.+|..+..- +-|+ .-+.. +..-.+
T Consensus 253 MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl 327 (409)
T KOG3880|consen 253 MVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNL 327 (409)
T ss_pred HHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHH
Confidence 344555555555544443332111 123333332 3466777777665433211 1111 11111 112223
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHH
Q 010343 178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253 (512)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 253 (512)
++.+......+.+ +++..++..+.-|+-.|..+....--+.+-.++++|..+++......++|..++.+++-.+
T Consensus 328 ~ff~~~a~~~ftp--si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 328 LFFLLQAWYWFTP--SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHhcc--HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3344445556667 7888899999999988888888888888888899999999999999999988887766433
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.52 E-value=2.7 Score=39.84 Aligned_cols=137 Identities=8% Similarity=-0.011 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHhhcCChHH--HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHH
Q 010343 141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAV--LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI 218 (512)
Q Consensus 141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 218 (512)
-|..-++..+..+++.+..|.+--++.|..- +.++.+..+...+.+...+ +.|..+++.++.+.......+.+..-
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~--~Iw~~Ya~yvlfr~~y~l~itiA~~~ 350 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ--HIWVCYAGYVLFRVIYQLTITIATFQ 350 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc--ceehhhhhHHHHHhhHhhhhhHHHHH
Confidence 3666677778888899999999888877643 4444455555555555566 89999999999988888888888888
Q ss_pred HhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-----------chhHHHHHHHHHHHHHHHHhhhcc
Q 010343 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-----------WPSVFYSFGSLGTVWFTVWLSKAH 282 (512)
Q Consensus 219 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----------~~~~f~~~~~~~~~~~~~~~~~~~ 282 (512)
+++...++.-|..+|+.....-+-. .++.-...+.-| +..-|.+.+++.++.........+
T Consensus 351 iA~nL~~e~~gLvFGiNTFvAl~lQ---silT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~ 422 (433)
T KOG3810|consen 351 IARNLSSELFGLVFGINTFVALILQ---SILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCR 422 (433)
T ss_pred HHHhhhhhhheeeeehHHHHHHHHH---HhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhh
Confidence 8888878887888888766543322 222222333212 234566677777666554444433
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.64 E-value=9.1 Score=36.80 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=94.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 399 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 399 (512)
++....+.+.+++....--+...-...|+.+..|-+....+....+-+...++...+.|...|+..|+|...... .+-
T Consensus 26 s~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L--~lq 103 (503)
T KOG2601|consen 26 SSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL--LLQ 103 (503)
T ss_pred cceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH--hhc
Confidence 344445667777777777777777778887755555555555556666666777778888889988886543211 111
Q ss_pred HHHhHHHHHHH-HhhccC-----ChhHHHHHHHHHHhhhhhhhhchhhh----hh--------hhhcCcchhhHHHHHHH
Q 010343 400 SIGFLGPAFFL-TQLSHV-----DSPAMAVLCMACSQGTDAFSQSGLYS----NH--------QDIAPRYSGVLLGLSNT 461 (512)
Q Consensus 400 ~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~g~~~g~~~~ 461 (512)
-.+...++..+ ..+... +.++ +..+.++....+........+ +. +.-++.......+....
T Consensus 104 NlSv~vagglvi~~l~~~~~~~~t~pv-~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~ 182 (503)
T KOG2601|consen 104 NLSVIVAGGLVITLLVHKDLKSATSPV-FTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRG 182 (503)
T ss_pred cHHHHHHHHHHhhheeecchhcccccH-HHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhh
Confidence 12222222222 222222 2333 333332222222222111111 11 11122333444466666
Q ss_pred HHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHH
Q 010343 462 AGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLV 496 (512)
Q Consensus 462 ~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~ 496 (512)
.-..-..+.|.+.|.+....+.+..-...++-.++
T Consensus 183 iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 183 IDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred hhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 77778899999999999988877654444444333
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.54 E-value=29 Score=33.18 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=22.4
Q ss_pred hcCCccchhhhhhhhHHHHHHHHHHHHHHHH
Q 010343 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIAD 382 (512)
Q Consensus 352 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 382 (512)
.|-+..+.+.+.+.+-.++.+|+.+.-++.|
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~d 68 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLD 68 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccC
Confidence 5667788888888777777777776665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 1e-72
Identities = 75/418 (17%), Positives = 144/418 (34%), Gaps = 15/418 (3%)
Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
RW I + F + + R N ++A+ P E ++ +G S Y ++ G
Sbjct: 26 RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84
Query: 162 WADTVGGKAVLGFGVVWWSIATALTPVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNIL 219
+D + L G++ + + + V+ G +G+ P +
Sbjct: 85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144
Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
W ER +++ +G + L F + W + Y +
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204
Query: 279 SKAHSSPAEDPQLRPAEKKLI-----VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
+ +P E K + K I +L +W + +++
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 264
Query: 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 393
+ +L W PTY +V HF L +S L L GW++D + T
Sbjct: 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324
Query: 394 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS- 452
V + + A + ++ +P + ++CM + + ++AP+ +
Sbjct: 325 VFF----MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 380
Query: 453 GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 509
G G + G L G V +A GY + WD F V +G ++ + + GEK
Sbjct: 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 47/368 (12%), Positives = 106/368 (28%), Gaps = 44/368 (11%)
Query: 126 AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 185
AI M+ + N V + ++ Y ++Q+ G +D VG + V+ G+ + +AT +
Sbjct: 22 AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81
Query: 186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT 245
+ L L+ G+G GV + + + +L+ G+ + +
Sbjct: 82 AVTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139
Query: 246 GLAFSPFLIHRFGWPSVFYS---FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSS 302
L + W + + + T W+ P+ RP +
Sbjct: 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWM----------PETRPVDAPR---- 185
Query: 303 CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF 362
+ + + + ++ G VL + +
Sbjct: 186 ---TRLLTS--YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL 240
Query: 363 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL---GPAFFLTQLSHVDSP 419
F + + + + QS+ G ++ V +
Sbjct: 241 ---------FILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNV 291
Query: 420 AMAVLCMACSQGTDAF----SQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATG 475
++ A + SG +A ++ GL N + + +
Sbjct: 292 WTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLA----SLSA 347
Query: 476 YILQHGSW 483
+ Q G
Sbjct: 348 MLPQTGQG 355
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 1/153 (0%)
Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
L S F L + I + F GLIQS+F++GY + I GI
Sbjct: 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84
Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLG-LPFLLVVRVFMGIGEGVAMPAMNNILSK 221
+ KA + G+ +++ AL AA++ LV + G G A N ++
Sbjct: 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144
Query: 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
P + L L + G++ + F LI
Sbjct: 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 8e-04
Identities = 72/519 (13%), Positives = 137/519 (26%), Gaps = 149/519 (28%)
Query: 9 SPILQSPPYISARNKLSRA--ELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNV-- 64
P + + YI R++L + RL R ++ +++ +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPAKNVLID 156
Query: 65 ----SEKSVKFEEALKDIALRSE-DLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNM- 118
S K+ + ++ + D + F W + C S + M
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKI-----------F---WLNLKNCNSPETVLEML 202
Query: 119 ------------DRVNMSIAILPMSAE---------FNWNPATVGLI-----QSSFFWGY 152
R + S I + P L+ Q++ W
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 153 -------LLTQIAGGIWADTVGGKAVLGFGVV-----------------WWSIATALTPV 188
LLT + D + + + P
Sbjct: 262 FNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW--VPVAERSRSLALVYSGMYLGSVTG 246
P L + I E ++ W V + + + S+
Sbjct: 321 EVLTTNPRRLSI-----IAE--SIRDGLATWDNWKHVNCDKLTTIIES--------SLNV 365
Query: 247 LAFSPFLI-HRFGWPSVF-----YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV 300
L P F SVF L +WF D + KL
Sbjct: 366 L--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWF--------DVIKSDVMV--VVNKLHK 413
Query: 301 SSCASKEPVK---TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT 357
S K+P + +IP + K + H + + +YN F+
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIV------DHYNIPKTFDSD 462
Query: 358 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 417
+ + P+L F +++G + + + +T R + FL ++ H
Sbjct: 463 D----LIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLE-----QKIRHDS 511
Query: 418 SPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVL 455
+ A + Q Y + D P+Y ++
Sbjct: 512 TA-----WNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.63 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.48 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.45 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.44 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.36 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.27 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=328.33 Aligned_cols=395 Identities=16% Similarity=0.210 Sum_probs=310.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
.+|+.+..+++..++..+....+.+.+|.+.+++ .+..++|++.+++.++..++++++|+++||+|||+++.++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 4677888888899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 181 IATALTPV----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 181 ~~~~~~~~----~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
++.+++++ ++ +++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 104 AVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 88 8999999999999999999999999999999999999999999999999999999999999898
Q ss_pred cC-chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhh---hhcccc--CCCCCCchHHHhhcChHHHHHHHHH
Q 010343 257 FG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI---VSSCAS--KEPVKTIPWGLILSKPPVWALIVSH 330 (512)
Q Consensus 257 ~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (512)
.| ||+.|++.+++.++..++.++..++++++....++++.+.. ..+.++ +...+....++.+++|.++.+.+..
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence 98 99999999988888777766666665543221111110000 000000 1111111257788999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHHHHhHH-HH
Q 010343 331 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL--VSKGLSVTTVRKIMQSIGFLG-PA 407 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~-~~ 407 (512)
++.......+..++|.|+++.+|++..+.+++.+...++.+++.++.|++.||+ ++|+ .......+.. .+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-------~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-------ATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-------hHHHHHHHHHHHH
Confidence 999999999999999999998899999999999999999999999999999998 7762 2222222222 22
Q ss_pred HHHHhhccCChhHH-HHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhH-HHHHHHHhhhheeecCcchh
Q 010343 408 FFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDD 485 (512)
Q Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~l~g~l~~~~g~~~ 485 (512)
..+.........+. ....++.+.+.............+..+++++|++.|+.+.+.++ |..++|.+.|.+.|+.||+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 414 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 414 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 22222222123333 33334444433333333333344445557899999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 010343 486 VFKVSVGLYLVGTAVWNLFS 505 (512)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~ 505 (512)
.|++.+++.+++.++.....
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777666543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=317.82 Aligned_cols=374 Identities=13% Similarity=0.130 Sum_probs=296.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHH
Q 010343 101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 180 (512)
+++..+..+++..++.++......+.+|.+.+++|.+..++|++.+++.++..++++++|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 45667777788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHh-cc
Q 010343 181 IATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HR 256 (512)
Q Consensus 181 ~~~~~~---~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~ 256 (512)
++.+++ .+.+ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus 103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999988 7777 99999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred cC-------------------------chhHHHHHHHHHHHHHHHHhhhc-cCCCCCCCCCChhhhHhhhhccccCCCCC
Q 010343 257 FG-------------------------WPSVFYSFGSLGTVWFTVWLSKA-HSSPAEDPQLRPAEKKLIVSSCASKEPVK 310 (512)
Q Consensus 257 ~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (512)
.+ ||+.|++.+++.++..++.++.. |+.++++++.+ +++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------------~~~~~ 247 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-------------KQGSF 247 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-------------STTSH
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-------------cccch
Confidence 54 89999888777766655554432 22222111110 11111
Q ss_pred CchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 010343 311 TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY-YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL 389 (512)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 389 (512)
..++++++++|.++...+..++..........++|.| +++.+|++..+.+.+.+...++.++++++.|++.||+++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~- 326 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK- 326 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-
T ss_pred hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-
Confidence 3467788999999999999999888899999999999 88878999999999999999999999999999999999883
Q ss_pred chhhHHHHHHHHHhHHHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHH
Q 010343 390 SVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVF 469 (512)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 469 (512)
.+..+.+............+..+......+.+.+.... .+.......+..|++++++.++.. ...+|..+
T Consensus 327 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 396 (438)
T 3o7q_A 327 --------VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGI 396 (438)
T ss_dssp --------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccccchhhHHH-HHHHHHHH
Confidence 22222222233333333334444444444445444433 445555533444445888888877 67799999
Q ss_pred HHHhhhheeecCc-chhHHHHHHHHHHHHHHH
Q 010343 470 GTAATGYILQHGS-WDDVFKVSVGLYLVGTAV 500 (512)
Q Consensus 470 g~~l~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 500 (512)
+|.+.|++.|..| ++..|.+.+++.++..++
T Consensus 397 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 397 VTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999988 999988876665554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=292.04 Aligned_cols=360 Identities=13% Similarity=0.097 Sum_probs=289.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
..+++..++..++...+.+.+|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCchhHHHHH
Q 010343 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF 266 (512)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 266 (512)
.+.+ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.
T Consensus 83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 9998 89999999999999999999999999999999999999999999999999999999999999989999999998
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010343 267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (512)
+++.++..+......||+++++++. ++...++++.+++|.++...+..++.......+..+.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777665555555543322111 011334667888999999999999988999999999999
Q ss_pred HHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-HHHHHHHHhhc--cCChhHHHH
Q 010343 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQLS--HVDSPAMAV 423 (512)
Q Consensus 347 ~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~ 423 (512)
|+++.+|.++.+.+.+.+...++.++++++.+++.||.+++ ....... ...+....... ..++.+...
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLL 295 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHH
Confidence 99998899999999999999999999999999999999863 1111111 11111111111 112333333
Q ss_pred HHHHHHhhhhhhhhchhhhhhhhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHH
Q 010343 424 LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 493 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~ 493 (512)
....+.+...+...+.......+..|+++|++.|+.+...++|..++|.+.|.+.+..++...+.+.+..
T Consensus 296 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 296 VPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3333333333344455555555555689999999999999999999999999999888888777765433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=279.13 Aligned_cols=393 Identities=13% Similarity=0.066 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-hhcc-----cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhh-cCChHHHHHHHHH
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILP-MSAE-----FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVW 178 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 178 (512)
++.+++..++..+........++. +.++ +|.+..+.|++.+++.++..++++++|+++|| +|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 444445555555555555444444 4444 99999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcc--hhHHHHHHHHhhhhHHHHHHhHHHHHhcc
Q 010343 179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHR 256 (512)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 256 (512)
.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++ |+.++++++...++|..++|.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 95 IMLGHIVLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988 89999999999999999999999999999999988 77888889999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCCC-----CCCChhhhHhhhhc-----------------cccC--------
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-----PQLRPAEKKLIVSS-----------------CASK-------- 306 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------------~~~~-------- 306 (512)
.|||+.|++.++..++..++.+...++..+++ .+.++++.+...+. .+..
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINL 252 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh
Confidence 99999999988777766655554433222111 11111111110000 0000
Q ss_pred ----------------CCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHH
Q 010343 307 ----------------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTM 370 (512)
Q Consensus 307 ----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~ 370 (512)
.+.+.....+..+....+.+.+..++....+.....+++.|.++..+.+....+.+.....++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (491)
T 4aps_A 253 LTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFI 332 (491)
T ss_dssp HHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHH
Confidence 0000000111112223445555555666666667778889998878888788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhcc----------CChhHHHHHHHHHHhhhhhhhhchh
Q 010343 371 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH----------VDSPAMAVLCMACSQGTDAFSQSGL 440 (512)
Q Consensus 371 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
+++.++.+++.||+++|+.... ..+..+....++.+..... .+..+......+.+.+..... +..
T Consensus 333 ~~~~~~~~~l~~r~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~ 407 (491)
T 4aps_A 333 MLYTPFFAWLWTAWKKNQPSSP----TKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLIS-PVG 407 (491)
T ss_dssp HHHHHHHHHHHHHTTTC---CH----HHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTT-THH
T ss_pred HHHHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHh-HHH
Confidence 9999999999999998864321 1111222222222221111 123333333333444433333 444
Q ss_pred hhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHHhcC
Q 010343 441 YSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 506 (512)
Q Consensus 441 ~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (512)
..+. +..+++.||++.|+.+....+|..++|.+.|.+.+. ++...|...+++.+++.++.+...+
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 445557899999999999999999999999998765 5777888877777777666655544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=259.40 Aligned_cols=398 Identities=14% Similarity=0.103 Sum_probs=267.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCC--------ChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHH
Q 010343 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW--------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG 173 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 173 (512)
.+.+.++..++.++.+++...++..+|.+.++++. +..+.|++.+++.++..++++++|+++||+|||+++.
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34444555667788888988888888888777632 3456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH------------------HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHH
Q 010343 174 FGVVWWSIATALTPV------------------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV 235 (512)
Q Consensus 174 ~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (512)
++.+++.++.+++++ ++ +++.++++|+++|++.|...+....++.|+.|+++|++..++.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 999999999998874 56 8999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHhHHHHHhcc--------cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCC-CCChhhhHhhhh-----
Q 010343 236 YSGMYLGSVTGLAFSPFLIHR--------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP-QLRPAEKKLIVS----- 301 (512)
Q Consensus 236 ~~~~~~g~~~g~~~~~~l~~~--------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----- 301 (512)
+.+..+|..+++.++..+... .+||..+.+..+..++..+ ..+..||+|+... +.+.++.....+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999999988877643 2366666665555544433 3444555543111 111111000000
Q ss_pred -----c----c-ccCCCCCCchHHHhhcChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHH
Q 010343 302 -----S----C-ASKEPVKTIPWGLILSKPPVWALIVSHFCHN-WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTM 370 (512)
Q Consensus 302 -----~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~ 370 (512)
+ . ...+..+.......++.+..........+.. .....+..+.+.+.++ .+.+...........++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVIN 325 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHH
Confidence 0 0 0000001112222334444444333333333 3344555566665555 6877777777788888999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHH---HHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhhhhh
Q 010343 371 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA---FFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI 447 (512)
Q Consensus 371 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
+++.++.+++.||+|||+... ........+ +......................++.....+..+.+..|.
T Consensus 326 ~~~~~~~~~l~dr~Grr~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 326 LTFTVLAIMTVDKFGRKPLQI-------IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHHHHHHHCSHHHHH-------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcCcchhc-------cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 999999999999999994322 111111111 1111122222222233333333333333344555666666
Q ss_pred cC-cchhhHHHHHHHHHhHHHHHHHHhhhheeec------CcchhHHHHHHHHHHHHHHHHHHhcCCccc
Q 010343 448 AP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH------GSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 510 (512)
Q Consensus 448 ~~-~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (512)
.| +.|+++.|+.+.+..+++.+++.+.+.+.+. .++...|++.+++++++.++.+++.++.|.
T Consensus 399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 66 7899999999999999999999888776553 345667888888888888777776665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=260.93 Aligned_cols=382 Identities=12% Similarity=0.027 Sum_probs=244.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhh-hcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHH---
Q 010343 108 LCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT--- 183 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~--- 183 (512)
.+....++.........+.+|.+ .+++|.|+.++|++.+++.++..++++++|+++||+|||+++.++..+.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~ 90 (417)
T 2cfq_A 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444455555556666777774 55689999999999999999999999999999999999999998887765432
Q ss_pred HHHHHHhhcCh-HHHHHHHHHHhhhhhchhhHHHHHHhcccCC--cchhHHHHHHHHhhhhHHHHHHhHHHHHhcccCch
Q 010343 184 ALTPVAAKLGL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 184 ~~~~~~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 260 (512)
....+.+ .. ..++..+++.|++.+...+.....+.++.++ ++++..++..+....+|..++|.+++++.+ .+|+
T Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~ 167 (417)
T 2cfq_A 91 FIFIFGP--LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQ 167 (417)
T ss_dssp HHHTHHH--HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchh
Confidence 1112222 11 1123345555554444333333333333322 456777888888999999999999999987 5899
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHHHHH
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL 340 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (512)
+.|++.++..++..+..+...++++++.++ ++.+ .+++++....++++++++|.++...+..+.....+..+
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2cfq_A 168 FVFWLGSGCALILAVLLFFAKTDAPSSATV-ANAV-------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF 239 (417)
T ss_dssp HHHTTTTTTTTTHHHHSCSSCCCCSCSSCS-SSSS-------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccccc-cccc-------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
Confidence 999987776554444433333332211100 0000 00001111234567889999988777666655566666
Q ss_pred HHhhHHHHHHhhcC---CccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhccCC
Q 010343 341 LTWMPTYYNQVLHF---NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 417 (512)
Q Consensus 341 ~~~~~~~l~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (512)
..++|.|+.+.++. +....+...++..++.+++.++.+++.||+++|+ .. ..+.+..++.+......+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~l--~~~~~~~~~~~~~~~~~~ 310 (417)
T 2cfq_A 240 DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-------AL--LLAGTIMSVRIIGSSFAT 310 (417)
T ss_dssp HHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-------HH--HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-------HH--HHHHHHHHHHHHHHHHhc
Confidence 67788888765442 2445577788888889999999999999999883 22 222223333232223333
Q ss_pred hhHHHHHH-HHHHhhhhhhhhchhhhhhhhh-cCcchhhHHHH-HHHHHhHHHHHHHHhhhheeecCcchhHHHHHHHHH
Q 010343 418 SPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 494 (512)
Q Consensus 418 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~-~~~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 494 (512)
+.+..... .+.+.... ...+....+..+. +++.||++.++ ++....+|+.++|.+.|++.|+.|+...|.+.+++.
T Consensus 311 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 33333222 22222222 2222334445444 45789999999 488888999999999999999989999999988888
Q ss_pred HHHHHHHHHhcCCccc
Q 010343 495 LVGTAVWNLFSTGEKV 510 (512)
Q Consensus 495 ~~~~~~~~~~~~~~~~ 510 (512)
+++.++.+...+++|+
T Consensus 390 l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 390 LGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHhhhcCCCc
Confidence 8887776665555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=241.92 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=145.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhh-hhcccC------CChhhHHHHHHHHHHHHHHHHhhhhHhHhhc-CChHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILP-MSAEFN------WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWS 180 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 180 (512)
+.+..++..+........++. +.+++| .+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 444455555555555555554 667889 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHH---HHHhhhhHHHHHHhHHHHHhccc
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRF 257 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~ 257 (512)
++.+++.+++. +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+...++|..++|.+++.+.+..
T Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 97 VGHAFLAIFEH-SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99888887642 578899999999999999999999999999999999776665 99999999999999999999989
Q ss_pred CchhHHHHHHHHHHHHHHHHhhh
Q 010343 258 GWPSVFYSFGSLGTVWFTVWLSK 280 (512)
Q Consensus 258 g~~~~f~~~~~~~~~~~~~~~~~ 280 (512)
||++.|++.+++.++..+..+..
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888877665555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=152.11 Aligned_cols=177 Identities=13% Similarity=0.067 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhc--CChHHHHHHHHHHH-
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGFGVVWWS- 180 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~- 180 (512)
.++.+.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |+|+.+..+..+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34445555555566666666777776665 899999999999999999999999999999999 99999888777766
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhh-HHHHHHhHHHHHhcccCc
Q 010343 181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGW 259 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~ 259 (512)
++.+++.+.+..+.+.+.+..++.|++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+.+..||
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6666666653226777888889999998888899999999999999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc
Q 010343 260 PSVFYSFGSLGTVWFTVWLSKA 281 (512)
Q Consensus 260 ~~~f~~~~~~~~~~~~~~~~~~ 281 (512)
+..|++.+++.++..++.+...
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877766665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-13 Score=133.98 Aligned_cols=162 Identities=10% Similarity=0.003 Sum_probs=129.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-hcc-cCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPM-SAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT 186 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 186 (512)
..+..++............|.+ .++ +|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++.+++.++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3334444444445555556665 554 59999999999999999999999999999999999999999999888888887
Q ss_pred HHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcccC-chhHHHH
Q 010343 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYS 265 (512)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~ 265 (512)
.+.+ +.+. ++..++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++
T Consensus 343 ~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 343 AFAG--GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp HHCC--HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred HHcC--CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 7776 4444 34448889999999999999999999755 888888877 667999999999999999999 9999987
Q ss_pred HHHHHHHHHH
Q 010343 266 FGSLGTVWFT 275 (512)
Q Consensus 266 ~~~~~~~~~~ 275 (512)
.++..++..+
T Consensus 418 ~~~~~~~~~~ 427 (438)
T 3o7q_A 418 PALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=131.78 Aligned_cols=145 Identities=8% Similarity=0.021 Sum_probs=122.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHH
Q 010343 137 NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMN 216 (512)
Q Consensus 137 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 216 (512)
+..+.|+..++..++..++.++.|++.||+|||+++..+.++.+++.++..+.+ +.+.+++..++.+++.+...+...
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888889999999999999999999999988888888777776666 777777888888888777777788
Q ss_pred HHHhcccCCcchhHHHHH-HHHhhhhHHHHHHhHHHHHhcccCchhHHHHHHHHHHHHHHHHhhhccC
Q 010343 217 NILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS 283 (512)
Q Consensus 217 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 283 (512)
.++.|.+|++.|+++.++ ++....+|..++|.++|.+.+..|++..|.+.+++.++..++.+...++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999999 4888889999999999999998899999998888887776665555544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-12 Score=129.52 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-----hcCCccchhhhhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhH
Q 010343 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV-----LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTV 394 (512)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~ 394 (512)
+.++.+.+..++..+.++....+++.|+++. +|++..+.+++.+...++..++.++.|+++|| +|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 4567777778888888889999999999988 89999999999999999999999999999999 89983
Q ss_pred HHHHHHHHhHHHHHHHHhhccCChhHHH-HHHHHHHhhhhhhhhchhhhhhhh-hcCcc--hhhHHHHHHHHHhHHHHHH
Q 010343 395 RKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQD-IAPRY--SGVLLGLSNTAGVLAGVFG 470 (512)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~g~~~g~~~~~~~~g~~ig 470 (512)
.+..+.+...+........++.+.. +..++.+.+.+. ..+....+..+ .++++ |+.+.++++...++|..++
T Consensus 87 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 87 ---AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 2223333333333333333344433 334444444443 44445555544 45566 7888898999999999999
Q ss_pred HHhhhheeecCcchhHHHHHHHHHHHHHHHHHHh
Q 010343 471 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 471 ~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (512)
|.++|.+.++.||+..|++.++..+++.++....
T Consensus 163 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 163 PLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888777776665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.5e-12 Score=126.90 Aligned_cols=174 Identities=14% Similarity=0.054 Sum_probs=125.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc------CCccchhhhhhhhHHHHHHHHHHHHHHHHHH-HhcCCchh
Q 010343 320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH------FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVT 392 (512)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~ 392 (512)
++.++.+.+..++..+.++....+++.|+++.+| ++..+.+++.+...++..++.++.|+++||+ |+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--- 87 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--- 87 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 4556677778888888888999999999988889 9999999999999999999999999999999 98832
Q ss_pred hHHHHHHHHHhHHHHHHHHhhccCC-hhHHHH-HHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHH---HHHHHhHH
Q 010343 393 TVRKIMQSIGFLGPAFFLTQLSHVD-SPAMAV-LCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGL---SNTAGVLA 466 (512)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~---~~~~~~~g 466 (512)
. ..+.+...+........+ +.+... ..++.+.+.+ ...+....+. +..++++|+++.+. .+...++|
T Consensus 88 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 88 ----I--LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp ----H--HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred ----H--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 2 222222222222222223 344333 3344444444 4444444544 44555778766555 88999999
Q ss_pred HHHHHHhhhheeecCcchhHHHHHHHHHHHHHHHHHH
Q 010343 467 GVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 503 (512)
Q Consensus 467 ~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (512)
..++|.+.|.+.+..||+..|.+.+++.+++.++...
T Consensus 161 ~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 161 SFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887776665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-12 Score=127.32 Aligned_cols=182 Identities=14% Similarity=0.022 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHH
Q 010343 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 184 (512)
.........+........+....+.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHH
Confidence 34444444555555566666667888888898888888888888899999999999999999999999998888887776
Q ss_pred HHHHHhhc--ChHHHHHHHHH-HhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhc------
Q 010343 185 LTPVAAKL--GLPFLLVVRVF-MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------ 255 (512)
Q Consensus 185 ~~~~~~~~--~~~~l~~~~~l-~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------ 255 (512)
..+..... +.+..++..++ .+.......+..+.+.+|.+|.+.|++++|+......+|..+++.+.+.+.+
T Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~ 437 (491)
T 4gc0_A 358 SLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA 437 (491)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65543211 22222222222 2222233456778899999999999999999999999999999888776643
Q ss_pred ccCchhHHHHHHHHHHHHHHHHhhhccCCCC
Q 010343 256 RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 286 (512)
Q Consensus 256 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 286 (512)
..++...|++.++++++..++.+++.||++.
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 3567788899999999988888888887654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-12 Score=122.21 Aligned_cols=170 Identities=10% Similarity=-0.020 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhH
Q 010343 325 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 404 (512)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 404 (512)
.+.+..++.......+...+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+....+. .....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~- 79 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM--SIFMLAT- 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH--HHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH--HHHHHHH-
Confidence 44556666667777777888887665 8999999999999999999999999999999999998765321 1111111
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHhhhhhhhhchhhhhh-hhhcCcchhhHHHHHHHHHhHHHHHHHHhhhheeecCcc
Q 010343 405 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 483 (512)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ig~~l~g~l~~~~g~ 483 (512)
......++.+.......+.+...+...+....+. +..++++|++++++.+....+|..++|.+++++.++.||
T Consensus 80 ------~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 80 ------LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 1111123344444443333333444444544544 444568999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 010343 484 DDVFKVSVGLYLVGTAVWNLF 504 (512)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~ 504 (512)
+..|.+.+++.++..++....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARW 174 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777665533333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 512 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-32 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-12 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.001 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 127 bits (318), Expect = 2e-32
Identities = 75/418 (17%), Positives = 147/418 (35%), Gaps = 15/418 (3%)
Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
RW I + F + + R N ++A +P E ++ +G S Y ++ G
Sbjct: 23 RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81
Query: 162 WADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
+D + L G++ + A + + V+ G +G+ P +
Sbjct: 82 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141
Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
W ER +++ +G + L F + W + Y +
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201
Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKE-----PVKTIPWGLILSKPPVWALIVSHFCH 333
+ +P E K +++ K I +L +W + +++
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261
Query: 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 393
+ +L W PTY +V HF L +S L L GW++D + T
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT- 320
Query: 394 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYS 452
+ + + A + ++ +P + ++CM + + ++AP + +
Sbjct: 321 ---GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377
Query: 453 GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 509
G G + G L G V +A GY + WD F V +G ++ + + GEK
Sbjct: 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 66.3 bits (160), Expect = 2e-12
Identities = 43/400 (10%), Positives = 100/400 (25%), Gaps = 13/400 (3%)
Query: 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV 166
+ F + + + + + + G+I ++ LL Q G+ +D +
Sbjct: 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 167 GGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA 226
G + L + + + A + L ++ + G + + +
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 227 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 286
+ SR + + G A ++ + + F + + +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 287 EDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346
A S S + + L ++ + V C T
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGV--SCTYDVFDQQFANFFT 248
Query: 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP 406
+ G + L A I + K +
Sbjct: 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN---------RIGGKNALLLAGTIM 299
Query: 407 AFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--RYSGVLLGLSNTAGV 464
+ + S S V+ F G + + + L
Sbjct: 300 SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359
Query: 465 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 504
LA +F + G + + + + V + L T +
Sbjct: 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.001
Identities = 21/187 (11%), Positives = 56/187 (29%), Gaps = 2/187 (1%)
Query: 318 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLG 377
L W + F + + + P + + + H + +++G+ L L
Sbjct: 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63
Query: 378 GWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQ 437
G ++D L + + + + F F+ + + + G +
Sbjct: 64 GLLSDKLGLRKYLLWII--TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121
Query: 438 SGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 497
+ + R S G + G + G + G + + + S ++
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181
Query: 498 TAVWNLF 504
++
Sbjct: 182 VLLFFAK 188
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.59 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.5 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-38 Score=312.97 Aligned_cols=400 Identities=16% Similarity=0.213 Sum_probs=304.6
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHH
Q 010343 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 179 (512)
+.+|.++..++++++..+++...++...|.+. |+|+|.+|+|++.+++.++..++++++|+++||+|||+++.++.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 35788888888889999998888888888775 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh--cChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhhHHHHHHhHHHHHhcc-
Q 010343 180 SIATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR- 256 (512)
Q Consensus 180 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~- 256 (512)
+++.+++++... .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 999888776531 26789999999999999999999999999999999999999999999999999999999887765
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhH-----hhhhccccCCCCCCchHHHhhcChHHHHHHHHHH
Q 010343 257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK-----LIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 331 (512)
Q Consensus 257 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (512)
.+||+.|++.+++.++..++.+...++.+++......++.+ ...+..+++...+....+..++++.++......+
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence 47999999998888888777777776665443322111111 1111111222233445677889999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHH
Q 010343 332 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (512)
+.....+....+.|.|+.+.++.+..+.+.......++.+++.++.|++.||+++++... .......+........
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 335 (447)
T d1pw4a_ 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA----TGVFFMTLVTIATIVY 335 (447)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH----HHHHHHHHHHHHHHHT
T ss_pred hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc----ccchhHHHHHHHHHHH
Confidence 999999999999999999989999999999999999999999999999999998774211 1111222222222222
Q ss_pred hhccCChhHHHHHHHHHHhhhhhhhhchhhhhhh-hhcCcchhhHHHHHHHHHhH-HHHHHHHhhhheeecCcchhHHHH
Q 010343 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKV 489 (512)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~-g~~ig~~l~g~l~~~~g~~~~~~~ 489 (512)
......+.+.........+.......+....... ..+++.+|++.|+.+...++ |..++|.+.|++.|+.|+...|.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~ 415 (447)
T d1pw4a_ 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415 (447)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 2223333444333333333333333334444444 44557899999999988887 556789999999999999999888
Q ss_pred HHHHHHHHHHHHHHh
Q 010343 490 SVGLYLVGTAVWNLF 504 (512)
Q Consensus 490 ~~~~~~~~~~~~~~~ 504 (512)
.+++.+++.++...+
T Consensus 416 ~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 416 MIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777666554444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-27 Score=234.14 Aligned_cols=390 Identities=11% Similarity=-0.020 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH
Q 010343 103 WFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181 (512)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 181 (512)
.+.++.+.+.+|+..+......+.+|. +.+++|.|+.++|++.+++.++..++++++|+++||+|||++++++..+..+
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 345566666777777778888888887 5667899999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhc--ChHHHHHHHHHHhhhhhchhhHHHHHHhcccCC--cchhHHHHHHHHhhhhHHHHHHhHHHHHhccc
Q 010343 182 ATALTPVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRF 257 (512)
Q Consensus 182 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 257 (512)
+..+..+.... .....++.+++.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 164 (417)
T d1pv7a_ 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI- 164 (417)
T ss_dssp THHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-
Confidence 88777765511 112234555566655555555544444443322 3445677788888899999999999988765
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHhhhhccccCCCCCCchHHHhhcChHHHHHHHHHHHHHHHH
Q 010343 258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337 (512)
Q Consensus 258 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 337 (512)
+|+..+........+..++..+..++.+.+.++.++.+.. +++.......+..+++..+.............
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (417)
T d1pv7a_ 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN--------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTY 236 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC--------CCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh--------cccccccccccccccccccchhhhhHHHHHHH
Confidence 5666666666666655555555555544433332221111 11112223444555555555555444444444
Q ss_pred HHHHHhhHHHHHH---hhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhHHHHHHHHhhc
Q 010343 338 FILLTWMPTYYNQ---VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 414 (512)
Q Consensus 338 ~~~~~~~~~~l~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (512)
.......+.+... ..+.+....+.......++..++..+.+++.||.+++ .....+.+..+.......
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~ 307 (417)
T d1pv7a_ 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHH
T ss_pred Hhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHHHHhhhccc
Confidence 4444444433322 2344556677788888899999999999999999988 233333333334444444
Q ss_pred cCChhHHHHHHHHH-HhhhhhhhhchhhhhhhhhcCcchhhHHHHHH-HHHhHHHHHHHHhhhheeecCcchhHHHHHHH
Q 010343 415 HVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSN-TAGVLAGVFGTAATGYILQHGSWDDVFKVSVG 492 (512)
Q Consensus 415 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~ig~~l~g~l~~~~g~~~~~~~~~~ 492 (512)
..++.+.......+ +.+.+...........+..+++.|+++.|+.. ....+|..++|.+.|++.|+.|++..|++.++
T Consensus 308 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~ 387 (417)
T d1pv7a_ 308 FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 44444444444444 44444444434444445556688999999865 56679999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCccc
Q 010343 493 LYLVGTAVWNLFSTGEKV 510 (512)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~ 510 (512)
+.++..++..+..++++.
T Consensus 388 ~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 388 VALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHhhcCCCc
Confidence 888887777776665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.4e-15 Score=145.42 Aligned_cols=174 Identities=7% Similarity=0.001 Sum_probs=145.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q 010343 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV 188 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 188 (512)
.....+.................++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc
Confidence 33333333333333334444455666677888899999999999999999999999999999999999999999999988
Q ss_pred HhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHH-HhhhhHHHHHHhHHHHHhcccCchhHHHHHH
Q 010343 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG 267 (512)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~ 267 (512)
.+ +.+.+++..++.|++.+...+...+++.|.+|+++|++..++.. ....+|..++|.+.|++.+.+|++..|++.+
T Consensus 309 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~ 386 (417)
T d1pv7a_ 309 AT--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 88 89999999999999999999999999999999999999999864 5677999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 010343 268 SLGTVWFTVWLSKAHSS 284 (512)
Q Consensus 268 ~~~~~~~~~~~~~~~~~ 284 (512)
++.++..++..+..+++
T Consensus 387 ~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 387 LVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 88888777766665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1e-13 Score=135.75 Aligned_cols=177 Identities=12% Similarity=0.040 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-hhcccCCChhhHHHHHHHHHHHHHHHHhhhhHhHhhcCChHHHHHHHHHHHH---
Q 010343 106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI--- 181 (512)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~--- 181 (512)
++......++............|. +.+.++.+..+.++..++..++..++.++.|++.||++|++..........+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 330 (447)
T d1pw4a_ 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 330 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHH
Confidence 334444444444444444444444 5667899999999999999999999999999999999987654433333222
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhhhhchhhHHHHHHhcccCCcchhHHHHHHHHhhhh-HHHHHHhHHHHHhcccCch
Q 010343 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWP 260 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~ 260 (512)
+..+.......+.+..+++.++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.+.+.+.+||+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~ 410 (447)
T d1pw4a_ 331 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 410 (447)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 222222222226677788888899998888899999999999999999999999888776 5677899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc
Q 010343 261 SVFYSFGSLGTVWFTVWLSKAH 282 (512)
Q Consensus 261 ~~f~~~~~~~~~~~~~~~~~~~ 282 (512)
..|++.++..++..++......
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 411 GGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887777776665555543
|