Citrus Sinensis ID: 010361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
Protein Sequence
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEccEEEEcEEccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEHEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matalaisqpvsfnlfnvsagkasalsqqppsriryrlssrrwlnldsISASHRFVsrcsitntevqldhvaaddevredmstnemecpVSVVQLNSEMLQINSEMLQMDSltlltegtfvdsllttipvlSEEEQnalaatpahpeGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGgplvgklmdhspripayICLNTVQAAAQLLSAAMIIHAHtviptsssmllhpWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKissgvldrakcsqsccrtsnegpvpdadnivDVGIEAIKLGWKeymqqpvlpaSLAYVLLCLNVVLTPGSLMTAFLTqrglnpsiiggFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWsgslsqqnpLLFFLCLIvsmpfylhsyr
Flexible Loop (DISEMBL)
matalaisqpvsfNLFNVSagkasalsqqppsriRYRLSSRRWLNLDSISASHRFVSRCSitntevqldhVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRtsnegpvpdadnivDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR
Low Complexity Region (SEG)
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR
Disordered region (IsUnstruct)
***********SFNLFN*****************RYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVA***************CPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLH***
Disordered Region (DISOPRED)
*********PVSFNLFNVSAG****************************************TNTEVQLDHVAAD*************CPVSVVQLNSE*************************************************GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISS*****************************VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR
Disordered Region (DISEMBL)
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR
Disordered Region (DISPRO)
**TALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSE*EQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLD******************DADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	512	2.2.26 [Sep-21-2011]
Q8W4E7	598	Solute carrier family 40	yes	no	0.941	0.806	0.660	0.0
Q2QNK7	591	Solute carrier family 40	yes	no	0.845	0.732	0.553	1e-133
B9FGV7	593	Solute carrier family 40	no	no	0.927	0.801	0.435	1e-102
Q9NP59	571	Solute carrier family 40	yes	no	0.630	0.565	0.230	1e-14
Q9I9R3	562	Solute carrier family 40	yes	no	0.630	0.574	0.240	3e-14
Q9JHI9	570	Solute carrier family 40	yes	no	0.630	0.566	0.236	8e-14
Q923U9	570	Solute carrier family 40	yes	no	0.630	0.566	0.233	1e-13
O80905	524	Solute carrier family 40	no	no	0.632	0.618	0.255	6e-13
F4KGN5	512	Solute carrier family 40	no	no	0.654	0.654	0.231	4e-12
Q5Z922	484	Solute carrier family 40	no	no	0.609	0.644	0.260	8e-08

>sp|Q8W4E7|S40A3_ARATH Solute carrier family 40 member 3, chloroplastic OS=Arabidopsis thaliana GN=IREG3 PE=1 SV=1

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/498 (66%), Positives = 388/498 (77%), Gaps = 16/498 (3%)

Query: 12  SFN-LFNVSAGKASALSQQPPSRIRY-RLSSRRWLNLDSISASHR----FVSRCSITNTE 65
           SF+ LF+    ++  LS    S +RY R  S RWL+L S  +  R    F SRCSITNT+
Sbjct: 13  SFDFLFHFPVDRSRFLSPVAFSSVRYHRFHSCRWLSLRSSPSCSRRLNSFSSRCSITNTD 72

Query: 66  VQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLL 125
           V  + V  DDE+ ED+ T   +  + +V L++ +          +SLTLLTE T+VD++L
Sbjct: 73  VCHEFVTTDDEIHEDLLTPIEDHSIPIVHLDTNISV-------TESLTLLTECTYVDTVL 125

Query: 126 TTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA 185
           T +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAIA+L+PSLLPVA
Sbjct: 126 TALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAIAMLYPSLLPVA 185

Query: 186 VMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTS-S 244
           VMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ+LSA MIIHA+TV  TS S
Sbjct: 186 VMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVLSAGMIIHAYTVPSTSAS 245

Query: 245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC 304
           S+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+ANAVL+RIDLLC
Sbjct: 246 SILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQANAVLHRIDLLC 305

Query: 305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCC 364
           EIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGVLDR KCS + C
Sbjct: 306 EIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGVLDRPKCSLNSC 365

Query: 365 RTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL 424
             S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+VLTPGSLMTAFL
Sbjct: 366 --SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFL 423

Query: 425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW 484
           TQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQASLLA+AVAVY 
Sbjct: 424 TQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYC 483

Query: 485 SGSLSQQNPLLFFLCLIV 502
           S SLS ++PL FFL +IV
Sbjct: 484 SSSLSHKSPLFFFLSMIV 501

Probable plastid transporter that may play a role in iron chelation, storage or sequestration under limiting iron conditions. In presence of exogenous antibiotics, may allow opportunistic entry of multiple aminoglycoside antibiotics into the chloroplast.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2QNK7|S40A2_ORYSJ Solute carrier family 40 member 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os12g0562100 PE=2 SV=1

 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/452 (55%), Positives = 314/452 (69%), Gaps = 19/452 (4%)

Query: 54  RFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLT 113
            FV RC ITN EV + H + + E  +D       C + VV L           +   S  
Sbjct: 53  NFVPRCYITNVEVDVSHTS-EQEALDDHPPLLPACAIPVVHLRD---------VPDASPF 102

Query: 114 LLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSA 173
            L E     +    +PVLSE E + +AATPAHP GLYALYA  L GNLVEQLWNFAWP+A
Sbjct: 103 PLHESASHSTDFEELPVLSEGELHTIAATPAHPAGLYALYASYLFGNLVEQLWNFAWPAA 162

Query: 174 IALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI 233
           +A+LHPSLLPVA++GFF+KL + +G P+VGKLMDH PRIP Y  LN VQ A QL+SAAM+
Sbjct: 163 LAILHPSLLPVAIVGFFTKLSVFIGAPIVGKLMDHFPRIPMYTGLNAVQVATQLISAAMV 222

Query: 234 IHA--HTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALA 291
           I+A  +    ++S+++L PWF  LV AGA+ERL G+ALGVA+ERDW VLLAG NRP+ALA
Sbjct: 223 IYAMKNVTHASTSAVVLKPWFIALVAAGAIERLAGLALGVAMERDWVVLLAGTNRPVALA 282

Query: 292 KANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISS 351
           +ANAVLNR+DL+CE  GAS+FG+LLSKY PVTCLK A GL++ S PV+++L    N+ S 
Sbjct: 283 QANAVLNRLDLVCETVGASVFGLLLSKYHPVTCLKIACGLMICSFPVLVVLGQLINRFSC 342

Query: 352 GVLD--RAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLC 409
             LD  R    +S C       + D   IV  G+ AI+ GW EY QQ VLPAS+A V L 
Sbjct: 343 HALDSSRTPSEESICAN-----LLDVRKIVQNGLSAIRNGWNEYKQQTVLPASVATVFLN 397

Query: 410 LNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL 469
            NV L PG++MTA L  RG++PSI+G FSGLC+ MG+ ATF+S+ LV R+GILKAGAAGL
Sbjct: 398 FNVALAPGAIMTALLMHRGISPSIVGAFSGLCSIMGLVATFISSSLVERVGILKAGAAGL 457

Query: 470 IFQASLLAMAVAVYWSGSLSQQNPLLFFLCLI 501
           I QASLL++A+ VYW+GS+SQ+ PLL FL  I
Sbjct: 458 IVQASLLSVALVVYWTGSISQRTPLLIFLAAI 489

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B9FGV7|S40A3_ORYSJ Solute carrier family 40 member 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0131500 PE=3 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/489 (43%), Positives = 301/489 (61%), Gaps = 14/489 (2%)

Query: 25  ALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTE-----VQLDHVAADDEVRE 79
           ALS+ P  R+           L  +++   F + CS +++E            A D++  
Sbjct: 18  ALSRLPCRRVAPPPVLPFPFPLRRLTSRRVFATSCSSSDSEHAPSASSTALAGAGDDLSA 77

Query: 80  DMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSE--EEQN 137
            + T E E  +  VQL+S ++    E   +             S    +  L+    E +
Sbjct: 78  GV-TQEREGALPFVQLSSGIVLRTEEQSLLGDHAPAPAPASAASSFALLDELNGGCREDD 136

Query: 138 ALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILI 196
            L  TPA+P  + ALYA CLAGN  EQLWNF WP+A+A+LHP S+LPVAV+GFF+KL++ 
Sbjct: 137 HLGETPAYPAAMNALYAACLAGNATEQLWNFTWPAAVAVLHPASILPVAVLGFFTKLVVF 196

Query: 197 VGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS-SMLLHPWFFVL 255
             GPLVG+L+   PRIPAY  L  +Q AA L+S A I +A  V   ++ S+LL PWF VL
Sbjct: 197 AAGPLVGELISSLPRIPAYRSLAAIQTAAHLVSVATITYAFAVHRAAAASLLLRPWFAVL 256

Query: 256 VLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGIL 315
           V + AV+RL  VALG+  ERD+ V LAG  RP+ALAKANA L+R+DLLCE  GAS+F +L
Sbjct: 257 VASTAVDRLACVALGIIAERDFVVQLAGAGRPVALAKANATLSRVDLLCETVGASIFALL 316

Query: 316 LSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDA 375
           LSK  P+TC+K +  + + +LP++I L    N+++ G+ D ++ + S    ++   +   
Sbjct: 317 LSKNNPLTCIKLSCVISLCALPLLIFLCGEMNRLADGIFDHSENTTSHAEKTSSFSI--- 373

Query: 376 DNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIG 435
              V+  +  ++ GW EYM+QPVLPASLAYV +C NV L PG+LMT FL  +G+ PS+IG
Sbjct: 374 RKTVEEAVATVRNGWSEYMRQPVLPASLAYVFVCFNVALAPGALMTTFLIHQGVRPSVIG 433

Query: 436 GFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL 495
            F G   ++G+ ATF +A LV+ LGILKAGAAGLI Q++LL  AV VY +G++S++   L
Sbjct: 434 AFGGSSGAVGILATFATARLVKELGILKAGAAGLIAQSALLGAAVVVYLTGAVSRRAGAL 493

Query: 496 F-FLCLIVS 503
           F FL LIV+
Sbjct: 494 FAFLGLIVA 502

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9NP59|S40A1_HUMAN Solute carrier family 40 member 1 OS=Homo sapiens GN=SLC40A1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 152/360 (42%), Gaps = 37/360 (10%)

Query: 163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct: 39  DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query: 222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q  + +L   ++    +H H ++      +L   + +++    +  L   A  + ++RDW
Sbjct: 99  QNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDW 158

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG +R   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct: 159 IVVVAGEDRS-KLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query: 338 VMIILTWFTNK------ISSGVLDRAKCSQSCCRTSNEGPVP---------DADNIVDVG 382
           V  +L W   +      + +G+ +     +      +  P P            NI ++ 
Sbjct: 218 VEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELE 277

Query: 383 IE--------------AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
            E                + GW  Y  QPV  A +    L +  VL    + T +   +G
Sbjct: 278 HEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMT-VLGFDCITTGYAYTQG 336

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAG-AAGLIFQASLLAMAVAVYWSGS 487
           L+ SI+    G  A  G+  T    +L R+ G+++ G  +GL   + L+   ++V+  GS
Sbjct: 337 LSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGS 396

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Homo sapiens (taxid: 9606)

>sp|Q9I9R3|S40A1_DANRE Solute carrier family 40 member 1 OS=Danio rerio GN=slc40a1 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 153/357 (42%), Gaps = 34/357 (9%)

Query: 163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++WNFA    +  L+  SLL  AV G      +++ G ++G  +D +PR+        V
Sbjct: 36  DRMWNFAVAVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNPRLKVAQTSLVV 95

Query: 222 QAAAQLLSAAMIIHAHTVIPTSSSM----LLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q +A +L  A+++         SSM    LL   + +++    +  L   A+ + ++RDW
Sbjct: 96  QNSAVILCGALLMAVFQFKQQLSSMYDGWLLTTCYIMVISIANIANLASTAMSITIQRDW 155

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG +R   LA  NA +  ID L  I    L G +++         F +G  ++S+ 
Sbjct: 156 VVVVAGDDRS-KLADMNATVRIIDQLTNILAPMLVGQIMAFGSHFIGCGFISGWNLFSMC 214

Query: 338 VMIILTWFTNKISSGVLDRAKCSQSCCRT-----------SNEGPV-------PDADNIV 379
           +   L W   + +  +  +A    S  +            + E PV         ++   
Sbjct: 215 LEYFLLWKVYQKTPALAFKAGQKDSDDQELKHLNIQKEIGNTESPVEASQLMTESSEPKK 274

Query: 380 DVG--------IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNP 431
           D G        I   K GW  Y  Q +  A ++   L +  VL    + T +   +GLN 
Sbjct: 275 DTGCCYQMAEPIRTFKDGWVAYYNQSIFFAGMSLAFLYMT-VLGFDCITTGYAYTQGLNG 333

Query: 432 SIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVA-VYWSGS 487
           S++    G  A  G+  T    ++ ++ G+++ G    + Q S L + VA V+  GS
Sbjct: 334 SVLSLLMGASAVSGICGTVAFTWIRKKCGLIRTGFIAGVTQLSCLTLCVASVFAPGS 390

May be involved in iron export and also in transfer of iron between maternal and fetal circulation.

Danio rerio (taxid: 7955)

>sp|Q9JHI9|S40A1_MOUSE Solute carrier family 40 member 1 OS=Mus musculus GN=Slc40a1 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 153/360 (42%), Gaps = 37/360 (10%)

Query: 163 EQLWNFAWPSAIALLH-PSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct: 39  DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query: 222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct: 99  QNVSVILCGIILMMVFLHKNELLTMYHGWVLTVCYILIITIANIANLASTATAITIQRDW 158

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG NR   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct: 159 IVVVAGENRS-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query: 338 VMIILTWFTNKISSGVLDRA--KCSQSCCRT----SNEGPVP---------DADNIVDVG 382
           V   L W   + +  +  +A  K  +S  +      +  P P            NI ++ 
Sbjct: 218 VEYFLLWKVYQKTPALAVKAALKVEESELKQLTSPKDTEPKPLEGTHLMGEKDSNIRELE 277

Query: 383 IE--------------AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
            E                + GW  Y  QPV  A +    L +  VL    + T +   +G
Sbjct: 278 CEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMT-VLGFDCITTGYAYTQG 336

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA-AGLIFQASLLAMAVAVYWSGS 487
           L+ SI+    G  A  G+  T    +L R+ G+++ G  +GL   + L+   ++V+  GS
Sbjct: 337 LSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGS 396

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Mus musculus (taxid: 10090)

>sp|Q923U9|S40A1_RAT Solute carrier family 40 member 1 OS=Rattus norvegicus GN=Slc40a1 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 37/360 (10%)

Query: 163 EQLWNFAWPSAIALLHPS-LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++W+FA    +  L+ + LL  AV G      ++V G ++G  +D + R+        V
Sbjct: 39  DRMWHFAVSVFLVELYGNGLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query: 222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct: 99  QNVSVILCGIILMMVFLHKNELLNMYHGWVLTVCYILIITIANIANLASTATAITIQRDW 158

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG NR   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct: 159 IVVVAGENRS-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query: 338 VMIILTWFTNKISSGVLDRA--KCSQSCCRT----SNEGPVP---------DADNIVDVG 382
           V   L W   + +  +  +A  K  +S  +      +  P P            NI ++ 
Sbjct: 218 VEYFLLWKVYQKTPALAVKAALKVEESELKQLTSPKDTEPKPLEGTHLMGEKDSNIRELE 277

Query: 383 IE--------------AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
            E                + GW  Y  QPV  A +    L +  VL    + T +   +G
Sbjct: 278 CEQEPTCASQIAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMT-VLGFDCITTGYAYTQG 336

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA-AGLIFQASLLAMAVAVYWSGS 487
           L+ SI+    G  A  G+  T    +L R+ G+++ G  +GL   + L+   ++V+  GS
Sbjct: 337 LSGSILSVLMGASAITGIMGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGS 396

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Rattus norvegicus (taxid: 10116)

>sp|O80905|S40A1_ARATH Solute carrier family 40 member 1 OS=Arabidopsis thaliana GN=IREG1 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 152/368 (41%), Gaps = 44/368 (11%)

Query: 152 LYACCLAGNLVEQLWNFAWPSAIALLH---PSLLPVAVMGFFSKLILIVGGPLVGKLMDH 208
           LY          + W F+   A+ ++H    SLL  A+ G        + GP+VG+ ++ 
Sbjct: 41  LYVGYFLARWSARTWEFS--VALYMIHLWPNSLLLAAIYGAIESGSTAIFGPIVGQWVEG 98

Query: 209 SPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLV----LAGAVERL 264
              +         Q  +  ++   +I    V    S  L  P F +L+    LAGA+  L
Sbjct: 99  MDYVKVLRLWLLFQNLSYTIAGGAVIKLLLVSDLKSRNL--PVFAILIVLTNLAGAIGVL 156

Query: 265 TGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE-PVT 323
           + +A  + +ERDWAV+++  + P  L K N+V+  IDL  ++    + G+++S      +
Sbjct: 157 STLAGTILIERDWAVVMSEGHPPAVLTKMNSVIRGIDLSSKLLSPVITGLIISFVSLKAS 216

Query: 324 CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV-- 381
            + FAA    W+     +  W    + SGV    + ++     S    V   D  V V  
Sbjct: 217 AITFAA----WATITAWVEYWLFISVYSGVPAITRSNERRILRSRTKQVEGRDAPVSVSI 272

Query: 382 --GIEAIKLG-----------------------WKEYMQQPVLPASLAYVLLCLNVVLTP 416
             G E    G                       W+ Y  Q V+   ++  LL    VL+ 
Sbjct: 273 VPGTEEGYTGNPPSRTGILVILDRMSKSSFVGAWRIYFNQEVVLPGVSLALLFFT-VLSF 331

Query: 417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL 476
           G+LMTA L   G+   IIG   G+ A++G+AAT +   +  RL  L+ G      Q S L
Sbjct: 332 GTLMTATLQWEGIPTYIIGIGRGISATVGLAATLVYPLMQSRLSTLRTGLWSFWSQWSCL 391

Query: 477 AMAVAVYW 484
            + V   W
Sbjct: 392 LVCVGSIW 399

May be involved in iron transport and iron homeostasis.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KGN5|S40A2_ARATH Solute carrier family 40 member 2 OS=Arabidopsis thaliana GN=IREG2 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 41/376 (10%)

Query: 143 PAHPEGLY-ALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGP 200
           P+ P  +  +LY          + W F+    +  L P SL   A+ G        + GP
Sbjct: 27  PSLPRSMVISLYLGYFLARWGARTWEFSVALYMIYLWPNSLFLTAMYGVVESGSATLFGP 86

Query: 201 LVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLV---- 256
           +VG+++D    +         Q  + +++   ++ A  V+P   S    P F  LV    
Sbjct: 87  IVGQMIDGMSYVKVLRLWLVTQNLSFIVAGGAVV-ALLVVPDLKSQNF-PVFATLVVLTN 144

Query: 257 LAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILL 316
           L+GA+  L+ +A  V +ERDW V+++  + P  L + N+V+  IDL  ++    + G+++
Sbjct: 145 LSGAIGVLSTLAGTVLIERDWVVVMSEGHSPAVLTRMNSVIRGIDLSSKLLSPVITGLII 204

Query: 317 SKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDA 375
           S      + + FAA    W+   + I  W    + +GV    +  +     S++    + 
Sbjct: 205 SFVSLRASAITFAA----WATITVWIEYWLFISVYNGVPAIVQSDERRSLRSSQSQAEET 260

Query: 376 DN---------------------------IVDVGIEAIKLGWKEYMQQPVLPASLAYVLL 408
           D+                           +  +   +    W+ Y+ Q ++   ++  LL
Sbjct: 261 DSASSFYVPLLHEEESYRNTQSRSRILRILERISESSFVSAWRNYLNQEIVLPGVSLALL 320

Query: 409 CLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG 468
               VL+ G+LMTA L  +G+   IIG   G+ A +G+AAT L   +  R+  L+ G   
Sbjct: 321 FFT-VLSFGTLMTATLEWKGIPTYIIGIGRGISAGVGLAATVLYPLMQSRISPLRTGVWS 379

Query: 469 LIFQASLLAMAVAVYW 484
              Q + L + V   W
Sbjct: 380 FWSQWTCLLVCVGSIW 395

Vacuolar transporter that is involved in the transport of excess nickel into the vacuole under iron deficiency, increasing cellular tolerance to nickel under iron deficiency stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z922|S40A1_ORYSJ Solute carrier family 40 member 1 OS=Oryza sativa subsp. japonica GN=Os06g0560000 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 151/341 (44%), Gaps = 29/341 (8%)

Query: 164 QLWNFA--------WPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAY 215
           ++W F+        WP        SLL  AV G      +   GP+VG ++D    +   
Sbjct: 39  RMWEFSVGLYMIRIWPG-------SLLLTAVYGVVEASAVAALGPIVGAVVDRLAYLQVL 91

Query: 216 ICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVL----AGAVERLTGVALGV 271
                +Q A+  ++A + + A  V     +    P F  LV+    +GA+  L+ +A  +
Sbjct: 92  RLWLLLQGAS-FVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNVSGALAALSTLAGTI 150

Query: 272 AVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGL 331
            +ER+W V++AG      L   N+V+ RIDL C++    L G  +S    V+    AA L
Sbjct: 151 LIEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISF---VSMEASAAAL 207

Query: 332 IMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPV-----PDADNIVDVGIEAI 386
             W+L  + +  W    + +G    ++ SQ   R +++        P     + + +   
Sbjct: 208 AAWNLAAVWVQYWLFVSVYAGFPALSETSQISRRRADDDEAAAAAQPQKVERLWMTMLPC 267

Query: 387 KLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGV 446
              W  Y +Q V+   +A   L    VL+ G+LMTA L   G+   +I    G+ A++G+
Sbjct: 268 WESWAVYARQEVVLPGVALAFLYFT-VLSFGTLMTATLDWEGIPAYVISLARGVSAAVGI 326

Query: 447 AATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGS 487
           AAT++      R+  L+AG   +  Q   L + VA  W+G 
Sbjct: 327 AATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGG 367

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
449454002	604	PREDICTED: solute carrier family 40 memb	0.958	0.812	0.699	0.0
255542912	596	conserved hypothetical protein [Ricinus	0.953	0.818	0.707	0.0
224124478	650	ferroportin protein family [Populus tric	0.943	0.743	0.648	0.0
225450573	564	PREDICTED: solute carrier family 40 memb	0.890	0.808	0.693	0.0
22327094	598	iron-regulated protein 3 [Arabidopsis th	0.941	0.806	0.660	1e-179
356535006	587	PREDICTED: solute carrier family 40 memb	0.888	0.775	0.680	1e-178
297808711	594	hypothetical protein ARALYDRAFT_489514 [	0.941	0.811	0.644	1e-175
449530126	475	PREDICTED: solute carrier family 40 memb	0.689	0.743	0.755	1e-152
147788973	871	hypothetical protein VITISV_020103 [Viti	0.806	0.474	0.608	1e-152
2191161	482	contains similarity to B. subtilus flage	0.820	0.871	0.551	1e-141

>gi|449454002|ref|XP_004144745.1| PREDICTED: solute carrier family 40 member 3, chloroplastic-like [Cucumis sativus]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/506 (69%), Positives = 419/506 (82%), Gaps = 15/506 (2%)

Query: 5   LAISQPVSFNLFNVSAGKASALSQQPPSRIRYR-LSSRRWLNLDS--ISAS---HRFVSR 58
           LA+SQP SF+ F  S  + S LS    SR+RYR +S RR  NL    IS+S    R +S+
Sbjct: 7   LALSQPYSFSCFKFSIREVSLLSHS--SRVRYRFVSCRRLKNLRQTCISSSSRLQRVISK 64

Query: 59  CSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEG 118
           CSITN++VQ D V+ +D+V+E +S+ E +C +++VQLNS  L+ ++  LQ + L+LLTEG
Sbjct: 65  CSITNSDVQFDQVSVEDDVQEALSSVEADCSLAIVQLNSGFLEADTLTLQTEPLSLLTEG 124

Query: 119 TFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLH 178
           T+VDSLLTT+PVLSEEEQN LAATPAHP GLYALYA C+AGNLVEQLWNFAWPSAIALLH
Sbjct: 125 TYVDSLLTTLPVLSEEEQNVLAATPAHPAGLYALYASCIAGNLVEQLWNFAWPSAIALLH 184

Query: 179 PSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHT 238
           PSLLPVAVMGFF+KL LIVGGPLVGK MD+ PR+PAY CLN VQAAAQLLSA+M+I+AHT
Sbjct: 185 PSLLPVAVMGFFTKLALIVGGPLVGKFMDNFPRVPAYTCLNCVQAAAQLLSASMVIYAHT 244

Query: 239 VIPT--SSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV 296
           V  T  SSS+LL PWF  L+ AGA+ERL+G+ALGVA+ERDW VLLAGINRPIALA+ANAV
Sbjct: 245 VPHTAASSSILLQPWFVTLIFAGAIERLSGIALGVAMERDWVVLLAGINRPIALAEANAV 304

Query: 297 LNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDR 356
           L+RIDLLCEI GASLFGI+LSKY+PVTCLK AAGL++WSLPV+++LTW TN++S+GVLDR
Sbjct: 305 LSRIDLLCEIVGASLFGIILSKYDPVTCLKCAAGLMLWSLPVVVLLTWLTNQLSTGVLDR 364

Query: 357 AKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTP 416
           AKC Q+CC    E   P     V+VG+E IK GWKEY+QQP LPASLAYVLL  N VL P
Sbjct: 365 AKCLQTCCGDPTEVTSP-----VNVGVEVIKNGWKEYLQQPALPASLAYVLLYFNAVLAP 419

Query: 417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL 476
           GSLMTAFLTQ+GL+PSIIGGFSGLCA MGV ATF+SA LVR+ GILKAGA GLIFQA+LL
Sbjct: 420 GSLMTAFLTQQGLSPSIIGGFSGLCAFMGVTATFVSANLVRQFGILKAGAVGLIFQAALL 479

Query: 477 AMAVAVYWSGSLSQQNPLLFFLCLIV 502
            +AVAVY SGSLS+Q+PLLFFL +IV
Sbjct: 480 TVAVAVYLSGSLSRQSPLLFFLVMIV 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542912|ref|XP_002512519.1| conserved hypothetical protein [Ricinus communis] gi|223548480|gb|EEF49971.1| conserved hypothetical protein [Ricinus communis]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/503 (70%), Positives = 410/503 (81%), Gaps = 15/503 (2%)

Query: 5   LAISQPVSFNLFNVSAGKASALSQQP-PSRIRYRLSSRRWLNLDSISASHRFV---SRCS 60
           L +   V+ N+F++   + ++LS  P  SRIRYRLS+RRWL+    S S RF    SRCS
Sbjct: 8   LPVHPNVNVNVFSI---RKASLSATPHASRIRYRLSTRRWLSFGPASLSCRFSNLNSRCS 64

Query: 61  ITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTF 120
           ITN+E Q   V  +DE  + +S  E +C       ++ +  I S++L+   L+LL E TF
Sbjct: 65  ITNSESQCSSVLTEDEAPQHVSEIEPDC-------SAPIFHIKSDVLESQPLSLLVETTF 117

Query: 121 VDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPS 180
           VDSLLT +PVLSEEEQNALAATPAHP GLYA YA CLAGNLVEQLWNFAWPSAIAL+HPS
Sbjct: 118 VDSLLTALPVLSEEEQNALAATPAHPVGLYAFYASCLAGNLVEQLWNFAWPSAIALIHPS 177

Query: 181 LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVI 240
           LLPVAVMGFF+KL +I GGPLVGKLMD+SPRIP+ I LN VQ AAQLLSA+MIIHAHTV 
Sbjct: 178 LLPVAVMGFFTKLAIIAGGPLVGKLMDYSPRIPSSIGLNIVQVAAQLLSASMIIHAHTVS 237

Query: 241 PTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR 299
           PTS SS+LLHPWF VLV+AGA+ERL GVALGVA+ERDW VLLAGINRPIALA+ANAVLNR
Sbjct: 238 PTSASSILLHPWFLVLVVAGAIERLCGVALGVAMERDWVVLLAGINRPIALAQANAVLNR 297

Query: 300 IDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKC 359
           IDLLCEIAGASLFGILL KY+PV+CLK AAGL++WSLP+MI LT  TNK+S+GVLD  + 
Sbjct: 298 IDLLCEIAGASLFGILLCKYDPVSCLKIAAGLMIWSLPIMIGLTLLTNKLSTGVLDHTRS 357

Query: 360 SQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSL 419
           S +CCR S  G +   D+IVD G+E IKLGWKEY+QQPVLPASLAYVLL  NVVL P SL
Sbjct: 358 SHACCRESTGGAMAGVDSIVDRGLETIKLGWKEYLQQPVLPASLAYVLLYFNVVLAPSSL 417

Query: 420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMA 479
           MTAFLTQRG+NPSI+ GFSGLCA+MGV ATFLSA LVR+LGILKAGAAGL+FQASLL +A
Sbjct: 418 MTAFLTQRGVNPSIVAGFSGLCAAMGVLATFLSASLVRQLGILKAGAAGLVFQASLLTLA 477

Query: 480 VAVYWSGSLSQQNPLLFFLCLIV 502
           VAVYWSGSLSQQ+PLLFFL LIV
Sbjct: 478 VAVYWSGSLSQQSPLLFFLGLIV 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124478|ref|XP_002330033.1| ferroportin protein family [Populus trichocarpa] gi|222871458|gb|EEF08589.1| ferroportin protein family [Populus trichocarpa]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/554 (64%), Positives = 410/554 (74%), Gaps = 71/554 (12%)

Query: 12  SFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFV---SRCSITNTEVQL 68
           SFN       KAS L     SR+RY ++ RRWLNLDS S+S RF    SRCSITNT++ L
Sbjct: 9   SFNFHGFFVRKASLLPSSA-SRVRYSINDRRWLNLDSASSSCRFRNLNSRCSITNTDLHL 67

Query: 69  DHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTI 128
            +V  +DE  +D+S  E +C   +V L +++L+        +SL+LL E T+VDS+LT +
Sbjct: 68  SNVLTEDEAPQDLSAAECDCSTPIVHLKTDILE-------SESLSLLAETTYVDSVLTAL 120

Query: 129 PVLSEEEQNALAATPAHPEGLY------------------------ALYACCLAGNLVEQ 164
           PVLSEEEQNALAATPAHP GLY                         LYA  LAGNLVEQ
Sbjct: 121 PVLSEEEQNALAATPAHPVGLYDWKSQSLRLKSDFDPIIFLFKKNETLYASSLAGNLVEQ 180

Query: 165 LWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA 224
           LWNFAWPSAIALLHPSLLPVAVM FFSKL +IVGGPLVGKLMD+SPR+PAY+ LN VQAA
Sbjct: 181 LWNFAWPSAIALLHPSLLPVAVMCFFSKLAIIVGGPLVGKLMDYSPRVPAYMGLNVVQAA 240

Query: 225 AQLLSAAMIIHAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVL--- 280
           AQLLSA MIIHAHTV PTS SS+LL PWF VLVLAGA+ERL GVA GVAVERDW +L   
Sbjct: 241 AQLLSATMIIHAHTVSPTSVSSVLLRPWFIVLVLAGAIERLCGVATGVAVERDWVILVLS 300

Query: 281 --------------------------------LAGINRPIALAKANAVLNRIDLLCEIAG 308
                                           LAG+NRPIALA+ANAVLNRIDL+CEIAG
Sbjct: 301 FCAVIIARFFNGYCFNLLETLAISNAVSLCVQLAGMNRPIALAQANAVLNRIDLICEIAG 360

Query: 309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSN 368
           AS+FGILLSKYEPVTCLKFAA  ++WSLPVMI LTW TNK+++GVLDR +  Q+CC  S+
Sbjct: 361 ASVFGILLSKYEPVTCLKFAAASMIWSLPVMIGLTWLTNKLATGVLDRPRSCQTCCGESS 420

Query: 369 EGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
           E    DA +IVD G+E IKLGWKEYMQQPVLPASLAYVLL  NVVL P SLMTAFLTQRG
Sbjct: 421 EEAAVDAGSIVDRGLETIKLGWKEYMQQPVLPASLAYVLLFFNVVLAPSSLMTAFLTQRG 480

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSL 488
           +NPS+IGGFSGLCA MGVAATFLSA LV++LGILKAGAAGL+FQASLL++AVAVYWSGSL
Sbjct: 481 VNPSVIGGFSGLCAFMGVAATFLSATLVKQLGILKAGAAGLVFQASLLSLAVAVYWSGSL 540

Query: 489 SQQNPLLFFLCLIV 502
           SQQ+P+LFFL LIV
Sbjct: 541 SQQSPVLFFLGLIV 554

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450573|ref|XP_002281965.1| PREDICTED: solute carrier family 40 member 1 [Vitis vinifera] gi|296089784|emb|CBI39603.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/479 (69%), Positives = 378/479 (78%), Gaps = 23/479 (4%)

Query: 26  LSQQPPSRIRYRLSSRRWLNLDSISAS-HRFVSRCSITNTEVQLDHVAADDEVREDMSTN 84
           L Q P S +R+R SS RWLN  S     + F SRCSITNTEVQ D  A D+ V+ED    
Sbjct: 15  LRQPPSSSLRHRFSSCRWLNRGSAPLRLNGFNSRCSITNTEVQFDQTATDEGVQEDFPDV 74

Query: 85  EMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPA 144
              CPV ++ L S++L+        +   LLTEGT+VDSLLT +PVLSEEEQ ALAATPA
Sbjct: 75  ASNCPVPIIHLKSDILET-------EPFNLLTEGTYVDSLLTALPVLSEEEQTALAATPA 127

Query: 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGK 204
           HP GLYALYA   AG LVEQLWNFAWP+AIALLHPSL PVAV+GFF+KL ++VGGPLVG+
Sbjct: 128 HPAGLYALYASSFAGGLVEQLWNFAWPAAIALLHPSLQPVAVIGFFTKLAVVVGGPLVGQ 187

Query: 205 LMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPT-SSSMLLHPWFFVLVLAGAVER 263
           LMD+ PR+PAY CLN VQA A LLS AMII AHTV  T +SS+LL PWFFVLVLAG+VER
Sbjct: 188 LMDYFPRVPAYNCLNLVQATAHLLSVAMIIRAHTVPSTLASSVLLRPWFFVLVLAGSVER 247

Query: 264 LTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVT 323
           L+G+ALGV VERDW VLLAG NRPIALA+ANAVLNRIDL+CEIAGASLFGILLSKY+ +T
Sbjct: 248 LSGLALGVTVERDWIVLLAGPNRPIALAEANAVLNRIDLVCEIAGASLFGILLSKYDIMT 307

Query: 324 CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI 383
            LKF AGL+ W++PV+++LTW TNK+SSGVL+R K               DA+  V +G+
Sbjct: 308 YLKFTAGLMTWTVPVVLVLTWLTNKLSSGVLNRTKSH-------------DAEVTVKIGV 354

Query: 384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCAS 443
            AIK GW EY+QQPVLPASLAYVLL  N VL PG LMTAFLTQRGLNPSI+GGFSGLCA 
Sbjct: 355 GAIKHGWMEYLQQPVLPASLAYVLLYFN-VLMPGGLMTAFLTQRGLNPSIVGGFSGLCAF 413

Query: 444 MGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIV 502
           MGVAATF+SA LVRRLG+LKAGAAGLIFQA LL +AVAVYWSGSLSQQ PLLFFLCLIV
Sbjct: 414 MGVAATFISANLVRRLGMLKAGAAGLIFQAFLLTIAVAVYWSGSLSQQTPLLFFLCLIV 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327094|ref|NP_198034.2| iron-regulated protein 3 [Arabidopsis thaliana] gi|75162463|sp|Q8W4E7.1|S40A3_ARATH RecName: Full=Solute carrier family 40 member 3, chloroplastic; AltName: Full=Ferroportin-3; AltName: Full=Iron-regulated transporter 3; Short=AtIREG3; AltName: Full=Protein MULTIPLE ANTIBIOTIC RESISTANCE 1; Flags: Precursor gi|17065060|gb|AAL32684.1| unknown protein [Arabidopsis thaliana] gi|22136218|gb|AAM91187.1| unknown protein [Arabidopsis thaliana] gi|332006226|gb|AED93609.1| iron-regulated protein 3 [Arabidopsis thaliana]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/498 (66%), Positives = 388/498 (77%), Gaps = 16/498 (3%)

Query: 12  SFN-LFNVSAGKASALSQQPPSRIRY-RLSSRRWLNLDSISASHR----FVSRCSITNTE 65
           SF+ LF+    ++  LS    S +RY R  S RWL+L S  +  R    F SRCSITNT+
Sbjct: 13  SFDFLFHFPVDRSRFLSPVAFSSVRYHRFHSCRWLSLRSSPSCSRRLNSFSSRCSITNTD 72

Query: 66  VQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLL 125
           V  + V  DDE+ ED+ T   +  + +V L++ +          +SLTLLTE T+VD++L
Sbjct: 73  VCHEFVTTDDEIHEDLLTPIEDHSIPIVHLDTNISV-------TESLTLLTECTYVDTVL 125

Query: 126 TTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA 185
           T +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAIA+L+PSLLPVA
Sbjct: 126 TALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAIAMLYPSLLPVA 185

Query: 186 VMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTS-S 244
           VMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ+LSA MIIHA+TV  TS S
Sbjct: 186 VMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVLSAGMIIHAYTVPSTSAS 245

Query: 245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC 304
           S+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+ANAVL+RIDLLC
Sbjct: 246 SILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQANAVLHRIDLLC 305

Query: 305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCC 364
           EIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGVLDR KCS + C
Sbjct: 306 EIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGVLDRPKCSLNSC 365

Query: 365 RTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL 424
             S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+VLTPGSLMTAFL
Sbjct: 366 --SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFL 423

Query: 425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW 484
           TQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQASLLA+AVAVY 
Sbjct: 424 TQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYC 483

Query: 485 SGSLSQQNPLLFFLCLIV 502
           S SLS ++PL FFL +IV
Sbjct: 484 SSSLSHKSPLFFFLSMIV 501

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535006|ref|XP_003536040.1| PREDICTED: solute carrier family 40 member 1-like [Glycine max]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 317/466 (68%), Positives = 375/466 (80%), Gaps = 11/466 (2%)

Query: 32  SRIRYRLSSRRWLNLDSISASHRFV---SRCSITNTEVQLDHVAADDEVREDMSTNEMEC 88
           S IR+R+ S R LNL     SHRF    S+CS+T+T+V L HV  D++  +     E  C
Sbjct: 24  SPIRHRIPSGRRLNLYYPRTSHRFACFGSKCSLTDTDVHLVHVTTDEDEAQGRGVVEPHC 83

Query: 89  PVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEG 148
           PV  V+LN+++L+        +SL LL E TFVD+LLT +PVLSEEEQ+AL+ATPAHP G
Sbjct: 84  PVPFVKLNTDILE-------TESLNLLAEATFVDTLLTALPVLSEEEQHALSATPAHPAG 136

Query: 149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDH 208
           L+A YA CL  N+VEQLWNFAWPSAIAL+HPSLLPVAVM FF+K+ +IVGGPLVGKLMDH
Sbjct: 137 LHAFYASCLTANVVEQLWNFAWPSAIALIHPSLLPVAVMSFFTKVAIIVGGPLVGKLMDH 196

Query: 209 SPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGV 267
            PR+ AY CL  VQA AQLLSAAMII AH+V PTS S++LL PWF +LV AGA+ERL GV
Sbjct: 197 FPRVSAYNCLTIVQATAQLLSAAMIIRAHSVQPTSFSTLLLRPWFVILVSAGAIERLCGV 256

Query: 268 ALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKF 327
           ALGVA ERDW VLLAG+NRPIALA+ANAVLNRIDLLCEIAGA LFG LLSK+ PV CLK 
Sbjct: 257 ALGVANERDWVVLLAGVNRPIALAQANAVLNRIDLLCEIAGAMLFGFLLSKFHPVICLKV 316

Query: 328 AAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK 387
           A+GL+M  LPV I+  + TNK+S+GVLDR K SQ+CCRT NE    DA +IV  G+EAIK
Sbjct: 317 ASGLMMGLLPVTIVFNYLTNKLSTGVLDRPKPSQTCCRTFNEDSALDASSIVFKGLEAIK 376

Query: 388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVA 447
           LGWKEY+ QPVLPASLA+VLLC N+VLTPGSL+TAFLTQRGL+PSIIGGFSG+CA MGVA
Sbjct: 377 LGWKEYLGQPVLPASLAWVLLCFNIVLTPGSLLTAFLTQRGLHPSIIGGFSGMCALMGVA 436

Query: 448 ATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNP 493
           ATF+S+ LV++ GILKAGA GL+FQA LL+MAVAVYWSG++S Q+P
Sbjct: 437 ATFVSSTLVKQFGILKAGAVGLVFQALLLSMAVAVYWSGTISHQSP 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808711|ref|XP_002872239.1| hypothetical protein ARALYDRAFT_489514 [Arabidopsis lyrata subsp. lyrata] gi|297318076|gb|EFH48498.1| hypothetical protein ARALYDRAFT_489514 [Arabidopsis lyrata subsp. lyrata]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/498 (64%), Positives = 380/498 (76%), Gaps = 16/498 (3%)

Query: 12  SFN-LFNVSAGKASALSQQPPSRIRYR-----LSSRRWLNLDSISASHRFVSRCSITNTE 65
           SF+ LF+    ++  LS    SR+RY             +       + F SRCSI NT+
Sbjct: 9   SFDFLFHFPVDRSRFLSPVAFSRVRYHRFPSCRWLSLSSSSSCSRRLNSFSSRCSIINTD 68

Query: 66  VQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLL 125
           V  D V  DD++ ED  T   +  + +V L++ +          +SL+LLTE TFVD++L
Sbjct: 69  VCHDFVTTDDDIHEDFLTPIEDHTIPIVHLDTNIAV-------TESLSLLTECTFVDTVL 121

Query: 126 TTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA 185
           T +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAIA+LHPSLLPVA
Sbjct: 122 TALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAIAMLHPSLLPVA 181

Query: 186 VMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPT-SS 244
           VMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ++SA MIIHA+TV  T +S
Sbjct: 182 VMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVVSAGMIIHAYTVPSTLAS 241

Query: 245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC 304
           S+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+ANAVL+R+DLLC
Sbjct: 242 SILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQANAVLHRMDLLC 301

Query: 305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCC 364
           EIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGVLDR KCS S C
Sbjct: 302 EIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGVLDRPKCSLSSC 361

Query: 365 RTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL 424
             S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+VLTPGSLMTAFL
Sbjct: 362 --SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFL 419

Query: 425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW 484
           TQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQASLLA+AVAVY 
Sbjct: 420 TQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYC 479

Query: 485 SGSLSQQNPLLFFLCLIV 502
           S SLSQ++PL FFL +IV
Sbjct: 480 SSSLSQKSPLFFFLSMIV 497

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530126|ref|XP_004172047.1| PREDICTED: solute carrier family 40 member 3, chloroplastic-like [Cucumis sativus]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/360 (75%), Positives = 311/360 (86%), Gaps = 7/360 (1%)

Query: 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGK 204
           + E L ALYA C+AGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFF+KL LIVGGPLVGK
Sbjct: 22  YDEYLTALYASCIAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFTKLALIVGGPLVGK 81

Query: 205 LMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPT--SSSMLLHPWFFVLVLAGAVE 262
            MD+ PR+PAY CLN VQAAAQLLSA+M+I+AHTV  T  SSS+LL PWF  L+ AGA+E
Sbjct: 82  FMDNFPRVPAYTCLNCVQAAAQLLSASMVIYAHTVPHTAASSSILLQPWFVTLIFAGAIE 141

Query: 263 RLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPV 322
           RL+G+ALGVA+ERDW VLLAGINRPIALA+ANAVL+RIDLLCEI GASLFGI+LSKY+PV
Sbjct: 142 RLSGIALGVAMERDWVVLLAGINRPIALAEANAVLSRIDLLCEIVGASLFGIILSKYDPV 201

Query: 323 TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVG 382
           TCLK AAGL++WSLPV+++LTW TN++S+GVLDRAKC Q+CC    E   P     V+VG
Sbjct: 202 TCLKCAAGLMLWSLPVVVLLTWLTNQLSTGVLDRAKCLQTCCGDPTEVTSP-----VNVG 256

Query: 383 IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCA 442
           +E IK GWKEY+QQP LPASLAYVLL  N VL PGSLMTAFLTQ+GL+PSIIGGFSGLCA
Sbjct: 257 VEVIKNGWKEYLQQPALPASLAYVLLYFNAVLAPGSLMTAFLTQQGLSPSIIGGFSGLCA 316

Query: 443 SMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIV 502
            MGV ATF+SA LVR+ GILKAGA GLIFQA+LL +AVAVY SGSLS+Q+PLLFFL +IV
Sbjct: 317 FMGVTATFVSANLVRQFGILKAGAVGLIFQAALLTVAVAVYLSGSLSRQSPLLFFLVMIV 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788973|emb|CAN67070.1| hypothetical protein VITISV_020103 [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 301/495 (60%), Positives = 342/495 (69%), Gaps = 82/495 (16%)

Query: 26  LSQQPPSRIRYRLSSRRWLN-----LDSISAS---------------------HRFVSRC 59
           L Q P S +R+R SS RWLN     L S  AS                     + F SRC
Sbjct: 347 LRQPPSSSLRHRFSSCRWLNRGSAPLRSAFASTVRHVVVYKIILIRTSSEDLLNGFNSRC 406

Query: 60  SITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGT 119
           SITNTEVQ D  A  + V+ED+      CPV ++ L S++L+        +   LLTEGT
Sbjct: 407 SITNTEVQFDQTATAEGVQEDLPDVASNCPVPIIHLKSDILE-------TEPFNLLTEGT 459

Query: 120 FVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP 179
           +VDSLLT +PVLSEEEQ ALAATPAHP GLYALYA   AG LVEQLWNFAWP+AIALLHP
Sbjct: 460 YVDSLLTALPVLSEEEQTALAATPAHPAGLYALYASSFAGGLVEQLWNFAWPAAIALLHP 519

Query: 180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTV 239
           SL PVAV+GFF+KL ++VGGPLVG+LMD+ PR+PAY CLN VQA A LLS AMII AHTV
Sbjct: 520 SLQPVAVIGFFTKLAVVVGGPLVGQLMDYFPRVPAYNCLNLVQATAHLLSVAMIIRAHTV 579

Query: 240 IPT-SSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN 298
             T +SS+LL PWFFVLVLAG+VERL+G+ALGV VERDW VLLAG NRPIALA+ANAVLN
Sbjct: 580 PSTLASSVLLRPWFFVLVLAGSVERLSGLALGVTVERDWIVLLAGPNRPIALAEANAVLN 639

Query: 299 RIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAK 358
           RIDL+CE+                                  +LTW TNK+SSGVL+R K
Sbjct: 640 RIDLVCEL----------------------------------VLTWLTNKLSSGVLNRTK 665

Query: 359 CSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGS 418
                          DA+  V +G+ AIK GW EY+QQPVLPASLAYVLL  NV L PG 
Sbjct: 666 SH-------------DAEVTVKIGVGAIKHGWMEYLQQPVLPASLAYVLLYFNV-LMPGG 711

Query: 419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAM 478
           LMTAFLTQRGLNPSI+GGFSGLCA MGVAATF+SA LVRRLG+LKAGAAGLIFQA LL +
Sbjct: 712 LMTAFLTQRGLNPSIVGGFSGLCAFMGVAATFISANLVRRLGMLKAGAAGLIFQAFLLTI 771

Query: 479 AVAVYWSGSLSQQNP 493
           AVAVYWSGSLSQQ P
Sbjct: 772 AVAVYWSGSLSQQTP 786

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2191161|gb|AAB61047.1| contains similarity to B. subtilus flagellar biosynthesis protein FLHA (SW:P35620) [Arabidopsis thaliana]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/522 (55%), Positives = 340/522 (65%), Gaps = 102/522 (19%)

Query: 37  RLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLN 96
           +++   WLN         F SRCSITNT+V  + V  DDE+ ED+ T   +  + +V L+
Sbjct: 9   QVAMDYWLN--------SFSSRCSITNTDVCHEFVTTDDEIHEDLLTPIEDHSIPIVHLD 60

Query: 97  SEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACC 156
           + +          +SLTLLTE T+VD++LT +PVLSEEEQ  +AATPAHPEGLY LYA C
Sbjct: 61  TNISV-------TESLTLLTECTYVDTVLTALPVLSEEEQTVIAATPAHPEGLYVLYASC 113

Query: 157 LAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYI 216
           L GNLVEQLWNFAWPSAIA+L+PSLLPVAVMGF +KL +I GGP+VGK MD+SPR+P YI
Sbjct: 114 LVGNLVEQLWNFAWPSAIAMLYPSLLPVAVMGFVTKLAIIAGGPVVGKFMDYSPRVPTYI 173

Query: 217 CLNTVQAAAQLLSAAMIIHAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVER 275
            LN +QAAAQ+LSA MIIHA+TV  TS SS+LL PWFF L+ AGA++ L G+A GVA+ER
Sbjct: 174 SLNVIQAAAQVLSAGMIIHAYTVPSTSASSILLQPWFFALLFAGAIDSLCGIASGVAIER 233

Query: 276 DWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWS 335
           DW VLLAGINRPIALA+ANAVL+RIDLLCE A                            
Sbjct: 234 DWVVLLAGINRPIALAQANAVLHRIDLLCETA---------------------------- 265

Query: 336 LPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNI-----------VDVGIE 384
                 L W TNK SSGVLDR KCS + C  S EG   + D+I           VD+G+E
Sbjct: 266 ------LIWLTNKFSSGVLDRPKCSLNSC--SAEGSRTNTDSIYITKYHLLCSSVDIGME 317

Query: 385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG---------------- 428
            IKLGWKEY+QQPVLPASLAYVLL  N+VLTPGSLMTAFLTQR                 
Sbjct: 318 TIKLGWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFLTQRCMLLRLGPLLFFSAWMK 377

Query: 429 ----------LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK------------AGA 466
                     L P  +  + GLCA MGVAATFLSA LV+R+GILK            AGA
Sbjct: 378 IVINLARVFVLLPITLSNY-GLCAVMGVAATFLSANLVKRVGILKVKCFPAICYLELAGA 436

Query: 467 AGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYL 508
            GL FQASLLA+AVAVY S SLS ++PL FFL +IVS  F L
Sbjct: 437 VGLFFQASLLAVAVAVYCSSSLSHKSPLFFFLSMIVSCFFTL 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
TAIR|locus:2148523	598	IREG3 "iron-regulated protein	0.960	0.822	0.656	1.3e-164
ASPGD|ASPL0000000841	471	AN6845 [Emericella nidulans (t	0.687	0.747	0.254	6.3e-17
UNIPROTKB|Q9NP59	571	SLC40A1 "Solute carrier family	0.353	0.316	0.256	1.7e-16
UNIPROTKB|F1NWJ7	581	ORMDL1 "Uncharacterized protei	0.351	0.309	0.276	2.4e-16
MGI|MGI:1315204	570	Slc40a1 "solute carrier family	0.353	0.317	0.256	9.8e-16
TAIR|locus:2142649	512	IREG2 "iron regulated 2" [Arab	0.419	0.419	0.245	1.3e-15
ZFIN|ZDB-GENE-000511-8	562	slc40a1 "solute carrier family	0.353	0.322	0.267	1.9e-15
RGD|620180	570	Slc40a1 "solute carrier family	0.353	0.317	0.251	2.2e-15
TAIR|locus:2057222	524	IREG1 "AT2G38460" [Arabidopsis	0.410	0.400	0.256	6.6e-15
UNIPROTKB|F1RXV2	575	Ssc.90898 "Uncharacterized pro	0.353	0.314	0.240	2e-13

TAIR|locus:2148523 IREG3 "iron-regulated protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
 Identities = 334/509 (65%), Positives = 395/509 (77%)

Query:     1 MATALAISQPVSFN-LFNVSAGKASALSQQPPSRIRY-RLSSRRWLNL-DSISASHR--- 54
             ++ AL    P SF+ LF+    ++  LS    S +RY R  S RWL+L  S S S R   
Sbjct:     3 VSMALVRHSP-SFDFLFHFPVDRSRFLSPVAFSSVRYHRFHSCRWLSLRSSPSCSRRLNS 61

Query:    55 FVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTL 114
             F SRCSITNT+V  + V  DDE+ ED+ T   +  + +V L++  + +       +SLTL
Sbjct:    62 FSSRCSITNTDVCHEFVTTDDEIHEDLLTPIEDHSIPIVHLDTN-ISVT------ESLTL 114

Query:   115 LTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAI 174
             LTE T+VD++LT +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAI
Sbjct:   115 LTECTYVDTVLTALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAI 174

Query:   175 ALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMII 234
             A+L+PSLLPVAVMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ+LSA MII
Sbjct:   175 AMLYPSLLPVAVMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVLSAGMII 234

Query:   235 HAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKA 293
             HA+TV  TS SS+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+A
Sbjct:   235 HAYTVPSTSASSILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQA 294

Query:   294 NAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV 353
             NAVL+RIDLLCEIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGV
Sbjct:   295 NAVLHRIDLLCEIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGV 354

Query:   354 LDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVV 413
             LDR KCS + C  S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+V
Sbjct:   355 LDRPKCSLNSC--SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIV 412

Query:   414 LTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQA 473
             LTPGSLMTAFLTQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQA
Sbjct:   413 LTPGSLMTAFLTQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQA 472

Query:   474 SLLAMAVAVYWSGSLSQQNPLLFFLCLIV 502
             SLLA+AVAVY S SLS ++PL FFL +IV
Sbjct:   473 SLLAVAVAVYCSSSLSHKSPLFFFLSMIV 501

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005215 "transporter activity" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

ASPGD|ASPL0000000841 AN6845 [Emericella nidulans (taxid:162425)]

 Score = 236 (88.1 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 96/377 (25%), Positives = 166/377 (44%)

Query:   138 ALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILI 196
             A +++PA    L  LY          +++ F     +A + P +LL  +V      L  +
Sbjct:    11 APSSSPASNRVLLRLYTSHFLSTWNSRMFEFGAVVFLASIFPGTLLYASVYALVRSLFAV 70

Query:   197 VGGPLVGKLMDHSPRIPAY---ICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFF 253
             +    +G L+D + R+ A    I    +  A   +   +++ +    P   S LL   F 
Sbjct:    71 LFSSWLGSLVDRTDRLSAIRHSIIWQRIPVAVSCVCLGLLLRSP---PGHLSRLL---FI 124

Query:   254 VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFG 313
              LVL   VE+L      V+VERDWAV+++     ++    NA + RIDL C++       
Sbjct:   125 ALVLLAGVEKLAATVNTVSVERDWAVVISE-TLLVSRKDLNASMRRIDLFCKLVAP---- 179

Query:   314 ILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNK-ISSGV--LDRAKCSQSCCRTSNEG 370
             +++S  + +   K A   ++     ++++ +F    +   V  LDR+   Q+     +E 
Sbjct:   180 VVVSLMDGLLSTKVAIWAVLGVNVTVVLVEYFAIAGVYHSVPQLDRSHERQAADDEEDEQ 239

Query:   371 -PVPD--ADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQR 427
              P+ +  A NI    I      W+EY+ Q V  AS A  LL L V L+ G  M  FL   
Sbjct:   240 QPLEEHLAQNIFAQYIRRTVAPWREYVGQSVFLASFALSLLYLTV-LSFGPTMVTFLLHS 298

Query:   428 GLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGS 487
             G +   +           ++ T+++  L+ R+G +++G   L +Q   LA AVA +   +
Sbjct:   299 GFSSLDVSAMRIGAVLTEISGTWMAPLLMDRIGPIRSGLWFLNWQFGTLAAAVAAF---A 355

Query:   488 LSQQNPLLFFLCLIVSM 504
              +   P L   CLI  +
Sbjct:   356 FASDRPRLVAGCLITGV 372

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NP59 SLC40A1 "Solute carrier family 40 member 1" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 48/187 (25%), Positives = 88/187 (47%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct:    39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H H ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG +R   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct:   159 IVVVAGEDRS-KLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query:   338 VMIILTW 344
             V  +L W
Sbjct:   218 VEYVLLW 224

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP;TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0005381 "iron ion transmembrane transporter activity" evidence=IMP

GO:0034755 "iron ion transmembrane transport" evidence=IMP

UNIPROTKB|F1NWJ7 ORMDL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
 Identities = 52/188 (27%), Positives = 90/188 (47%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      +++ G ++G  +D + R+        V
Sbjct:    40 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNSRLKVAQTSLVV 99

Query:   222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWF----FVLVLAGA-VERLTGVALGVAVERD 276
             Q A+ +L   +I+    +  T    L H W     ++LV+  A +  L   A  + ++RD
Sbjct:   100 QNASVIL-CGIILMIIFLFKTQLLTLYHGWLLTMCYILVITIANIANLASTATAITIQRD 158

Query:   277 WAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSL 336
             W V++AG +R   LA  NA + RID L  I      G +++   P+    F +G  + S+
Sbjct:   159 WIVVVAGEDRS-KLADMNATIRRIDQLTNILAPMAVGQIMTFGSPMIGCGFISGWNLMSM 217

Query:   337 PVMIILTW 344
              V  +L W
Sbjct:   218 CVEYLLLW 225

GO:0016021 "integral to membrane" evidence=IEA

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

MGI|MGI:1315204 Slc40a1 "solute carrier family 40 (iron-regulated transporter), member 1" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
 Identities = 48/187 (25%), Positives = 87/187 (46%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct:    39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKNELLTMYHGWVLTVCYILIITIANIANLASTATAITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG NR   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct:   159 IVVVAGENRS-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query:   338 VMIILTW 344
             V   L W
Sbjct:   218 VEYFLLW 224

GO:0002260 "lymphocyte homeostasis" evidence=IMP

GO:0003158 "endothelium development" evidence=IMP

GO:0005381 "iron ion transmembrane transporter activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005771 "multivesicular body" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006826 "iron ion transport" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=ISO

GO:0006915 "apoptotic process" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=ISO;IDA

GO:0048536 "spleen development" evidence=IMP

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IMP

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IMP

TAIR|locus:2142649 IREG2 "iron regulated 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 56/228 (24%), Positives = 102/228 (44%)

Query:   133 EEEQNALAATPAHPEGLY-ALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFF 190
             +EE+      P+ P  +  +LY          + W F+    +  L P SL   A+ G  
Sbjct:    17 QEEEEEEEEEPSLPRSMVISLYLGYFLARWGARTWEFSVALYMIYLWPNSLFLTAMYGVV 76

Query:   191 SKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHP 250
                   + GP+VG+++D    +         Q  + +++   ++ A  V+P   S    P
Sbjct:    77 ESGSATLFGPIVGQMIDGMSYVKVLRLWLVTQNLSFIVAGGAVV-ALLVVPDLKSQNF-P 134

Query:   251 WFFVLV----LAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI 306
              F  LV    L+GA+  L+ +A  V +ERDW V+++  + P  L + N+V+  IDL  ++
Sbjct:   135 VFATLVVLTNLSGAIGVLSTLAGTVLIERDWVVVMSEGHSPAVLTRMNSVIRGIDLSSKL 194

Query:   307 AGASLFGILLSKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV 353
                 + G+++S      + + FAA    W+   + I  W    + +GV
Sbjct:   195 LSPVITGLIISFVSLRASAITFAA----WATITVWIEYWLFISVYNGV 238

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015099 "nickel cation transmembrane transporter activity" evidence=IGI

GO:0006824 "cobalt ion transport" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA;IMP

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=IMP

GO:0015675 "nickel cation transport" evidence=IMP

GO:0055068 "cobalt ion homeostasis" evidence=IMP

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

ZFIN|ZDB-GENE-000511-8 slc40a1 "solute carrier family 40 (iron-regulated transporter), member 1" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 50/187 (26%), Positives = 89/187 (47%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++WNFA    +  L+  SLL  AV G      +++ G ++G  +D +PR+        V
Sbjct:    36 DRMWNFAVAVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNPRLKVAQTSLVV 95

Query:   222 QAAAQLLSAAMIIHAHTVIPTSSSM----LLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q +A +L  A+++         SSM    LL   + +++    +  L   A+ + ++RDW
Sbjct:    96 QNSAVILCGALLMAVFQFKQQLSSMYDGWLLTTCYIMVISIANIANLASTAMSITIQRDW 155

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG +R   LA  NA +  ID L  I    L G +++         F +G  ++S+ 
Sbjct:   156 VVVVAGDDRS-KLADMNATVRIIDQLTNILAPMLVGQIMAFGSHFIGCGFISGWNLFSMC 214

Query:   338 VMIILTW 344
             +   L W
Sbjct:   215 LEYFLLW 221

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA;IMP;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0006826 "iron ion transport" evidence=IMP

GO:0042541 "hemoglobin biosynthetic process" evidence=IMP

GO:0043362 "nucleate erythrocyte maturation" evidence=IMP

GO:0006811 "ion transport" evidence=IEA

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0010039 "response to iron ion" evidence=IDA

GO:0046688 "response to copper ion" evidence=IDA

RGD|620180 Slc40a1 "solute carrier family 40 (iron-regulated transporter), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 47/187 (25%), Positives = 87/187 (46%)

Query:   163 EQLWNFAWPSAIALLHPS-LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+ + LL  AV G      ++V G ++G  +D + R+        V
Sbjct:    39 DRMWHFAVSVFLVELYGNGLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKNELLNMYHGWVLTVCYILIITIANIANLASTATAITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG NR   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct:   159 IVVVAGENRS-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query:   338 VMIILTW 344
             V   L W
Sbjct:   218 VEYFLLW 224

GO:0002260 "lymphocyte homeostasis" evidence=ISO

GO:0003158 "endothelium development" evidence=ISO

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA;ISO;NAS

GO:0005771 "multivesicular body" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006826 "iron ion transport" evidence=ISO;NAS

GO:0006879 "cellular iron ion homeostasis" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=ISO

GO:0048536 "spleen development" evidence=ISO

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=ISO

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=ISO

TAIR|locus:2057222 IREG1 "AT2G38460" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
 Identities = 58/226 (25%), Positives = 100/226 (44%)

Query:   166 WNFAWPSAIALLH--P-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ 222
             W F+   A+ ++H  P SLL  A+ G        + GP+VG+ ++    +         Q
Sbjct:    55 WEFS--VALYMIHLWPNSLLLAAIYGAIESGSTAIFGPIVGQWVEGMDYVKVLRLWLLFQ 112

Query:   223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLV----LAGAVERLTGVALGVAVERDWA 278
               +  ++   +I    V    S  L  P F +L+    LAGA+  L+ +A  + +ERDWA
Sbjct:   113 NLSYTIAGGAVIKLLLVSDLKSRNL--PVFAILIVLTNLAGAIGVLSTLAGTILIERDWA 170

Query:   279 VLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE-PVTCLKFAAGLIMWSLP 337
             V+++  + P  L K N+V+  IDL  ++    + G+++S      + + FAA    W+  
Sbjct:   171 VVMSEGHPPAVLTKMNSVIRGIDLSSKLLSPVITGLIISFVSLKASAITFAA----WATI 226

Query:   338 VMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI 383
                +  W    + SGV    + ++     S    V   D  V V I
Sbjct:   227 TAWVEYWLFISVYSGVPAITRSNERRILRSRTKQVEGRDAPVSVSI 272

GO:0005215 "transporter activity" evidence=ISS

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006824 "cobalt ion transport" evidence=IMP

UNIPROTKB|F1RXV2 Ssc.90898 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
 Identities = 45/187 (24%), Positives = 85/187 (45%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        +
Sbjct:    39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVI 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H   ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKDELLTMYHGWVLTSCYILIITIANIANLASTATTITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG +R   LA  NA + RID L  I      G +++    V    F +G  + S+ 
Sbjct:   159 IVVVAGEDRS-KLADMNATIRRIDQLTNILAPMAVGQIMTFGSAVIGCGFISGWNLVSMC 217

Query:   338 VMIILTW 344
             V   L W
Sbjct:   218 VEYFLLW 224

GO:0016021 "integral to membrane" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4E7	S40A3_ARATH	No assigned EC number	0.6606	0.9414	0.8060	yes	no
Q2QNK7	S40A2_ORYSJ	No assigned EC number	0.5530	0.8457	0.7326	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_131000100 ferroportin protein family (650 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	512
pfam06963	432	pfam06963, FPN1, Ferroportin1 (FPN1)	4e-99

>gnl|CDD|219242 pfam06963, FPN1, Ferroportin1 (FPN1)

 Score =  305 bits (783), Expect = 4e-99
 Identities = 128/368 (34%), Positives = 183/368 (49%), Gaps = 12/368 (3%)

Query: 146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGK 204
              L  LY         +++W FA P  +A L+P SLL  AV G    L  +V GP+VG+
Sbjct: 1   SSALIRLYVSHFLSTWGDRMWEFAVPLFMAELYPGSLLLAAVYGLVESLSALVLGPIVGQ 60

Query: 205 LMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS--SMLLHPWFFVLVLAGAVE 262
           L+D  PR+ A      +Q  +  +S A+ I    V+   S  S LL P F V VL  AV 
Sbjct: 61  LVDRLPRLKAIRLSLLLQNLSVAVSGALFIALFVVLSLLSQASPLLIPLFAVTVLLAAVA 120

Query: 263 RLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPV 322
           +L   A  VA+ERDW V+++G   P+ LAK NA L RIDL C++    L G+LLS     
Sbjct: 121 KLASTANTVAIERDWVVVISG-GLPVVLAKMNATLRRIDLFCKLLAPLLVGLLLSFVSLR 179

Query: 323 TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPV-----PDADN 377
               F     + S+ V   L     K    +  +A+   S    +          P    
Sbjct: 180 AAAGFLLVWNLVSVVVEYFLLASVYKSVPALSRKAEVRTSRDEEAGSELQEPANRPSIVK 239

Query: 378 IVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGF 437
            V   ++  + GW+EY++QPV  AS A  LL   V L+ G+LMT +L  +GL+PS+IGG 
Sbjct: 240 RVKEYVKTQRDGWREYVRQPVFLASFALSLLYFTV-LSFGTLMTTYLLHQGLSPSVIGGM 298

Query: 438 SGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSG--SLSQQNPLL 495
            G  A  G+A TF   +L +R+G+L+ G   L +Q S LA+AVA  +     +S  +  L
Sbjct: 299 RGGSAVTGLAGTFAYPFLEKRIGLLRTGLWSLWWQLSCLALAVASVFLPGSPMSALSAFL 358

Query: 496 FFLCLIVS 503
            F  + +S
Sbjct: 359 LFGGVALS 366

This family represents a conserved region approximately 100 residues long within eukaryotic Ferroportin1 (FPN1), a protein that may play a role in iron export from the cell. This family may represent a number of transmembrane regions in Ferroportin1. Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	512
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	100.0
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.82
TIGR00900	365	2A0121 H+ Antiporter protein.	99.79
PRK10489	417	enterobactin exporter EntS; Provisional	99.79
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.67
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.6
PRK05122	399	major facilitator superfamily transporter; Provisi	99.55
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.55
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.53
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.52
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.49
TIGR00901	356	2A0125 AmpG-related permease.	99.48
PRK12307	426	putative sialic acid transporter; Provisional	99.47
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.47
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
PRK11902	402	ampG muropeptide transporter; Reviewed	99.46
TIGR00891	405	2A0112 putative sialic acid transporter.	99.46
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.43
PRK12382	392	putative transporter; Provisional	99.42
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.41
PRK11043	401	putative transporter; Provisional	99.41
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.4
PRK03545	390	putative arabinose transporter; Provisional	99.4
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.39
PRK10091	382	MFS transport protein AraJ; Provisional	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.36
PRK10054	395	putative transporter; Provisional	99.33
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.33
PRK09528	420	lacY galactoside permease; Reviewed	99.32
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.32
PRK11663	434	regulatory protein UhpC; Provisional	99.31
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.3
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.28
PRK15011	393	sugar efflux transporter B; Provisional	99.28
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.27
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.26
PRK03633	381	putative MFS family transporter protein; Provision	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.25
TIGR00895	398	2A0115 benzoate transport.	99.22
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.22
PRK10504	471	putative transporter; Provisional	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.2
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.19
PRK10133	438	L-fucose transporter; Provisional	99.17
PRK11010	491	ampG muropeptide transporter; Validated	99.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.14
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.13
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.12
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.12
PRK10429	473	melibiose:sodium symporter; Provisional	99.09
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.09
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.09
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.08
PRK03699	394	putative transporter; Provisional	99.08
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.03
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.01
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.99
PRK09705	393	cynX putative cyanate transporter; Provisional	98.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.96
PF13347	428	MFS_2: MFS/sugar transport protein	98.93
PRK09848	448	glucuronide transporter; Provisional	98.92
PRK09669	444	putative symporter YagG; Provisional	98.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.89
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.83
PLN00028	476	nitrate transmembrane transporter; Provisional	98.83
COG2211	467	MelB Na+/melibiose symporter and related transport	98.81
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.81
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.8
PRK15075	434	citrate-proton symporter; Provisional	98.77
TIGR00805	633	oat sodium-independent organic anion transporter.	98.72
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.7
PRK11462	460	putative transporter; Provisional	98.69
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.68
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.67
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.58
PRK10642	490	proline/glycine betaine transporter; Provisional	98.55
PRK09952	438	shikimate transporter; Provisional	98.55
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.48
TIGR00898	505	2A0119 cation transport protein.	98.48
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.4
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.36
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.35
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.33
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.28
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.21
KOG2615	451	consensus Permease of the major facilitator superf	98.17
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.16
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.14
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.13
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.12
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.09
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.05
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.02
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.89
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.85
PRK10504	471	putative transporter; Provisional	97.85
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.78
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.78
TIGR00893	399	2A0114 d-galactonate transporter.	97.75
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.72
TIGR00900	365	2A0121 H+ Antiporter protein.	97.7
PRK03545	390	putative arabinose transporter; Provisional	97.67
PRK10489	417	enterobactin exporter EntS; Provisional	97.65
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.64
PRK03633	381	putative MFS family transporter protein; Provision	97.62
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.62
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.6
PRK09874	408	drug efflux system protein MdtG; Provisional	97.6
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.57
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.52
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.51
PRK03699	394	putative transporter; Provisional	97.49
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.46
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.43
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.43
KOG0569	485	consensus Permease of the major facilitator superf	97.38
PRK15011	393	sugar efflux transporter B; Provisional	97.37
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.36
TIGR00895	398	2A0115 benzoate transport.	97.36
PRK10091	382	MFS transport protein AraJ; Provisional	97.34
PRK11902	402	ampG muropeptide transporter; Reviewed	97.34
KOG2532	466	consensus Permease of the major facilitator superf	97.33
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.29
PRK10054	395	putative transporter; Provisional	97.26
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.25
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.25
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.22
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.21
PRK03893	496	putative sialic acid transporter; Provisional	97.21
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.16
KOG2533	495	consensus Permease of the major facilitator superf	97.11
PRK09848	448	glucuronide transporter; Provisional	97.08
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.07
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.03
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.01
TIGR00891	405	2A0112 putative sialic acid transporter.	96.99
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	96.99
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.96
PRK12382	392	putative transporter; Provisional	96.93
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.89
PRK11663	434	regulatory protein UhpC; Provisional	96.85
PRK11010	491	ampG muropeptide transporter; Validated	96.84
PF13347	428	MFS_2: MFS/sugar transport protein	96.8
PRK09669	444	putative symporter YagG; Provisional	96.79
PRK09705	393	cynX putative cyanate transporter; Provisional	96.78
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.72
PRK12307	426	putative sialic acid transporter; Provisional	96.7
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.61
PRK05122	399	major facilitator superfamily transporter; Provisi	96.59
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.56
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.52
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.49
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.45
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.37
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.34
PRK09952	438	shikimate transporter; Provisional	96.33
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.3
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.27
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.25
PRK10473	392	multidrug efflux system protein MdtL; Provisional	96.2
PRK15075	434	citrate-proton symporter; Provisional	96.18
PRK09528	420	lacY galactoside permease; Reviewed	96.17
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.15
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.11
TIGR00898	505	2A0119 cation transport protein.	96.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.03
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.95
PRK10429	473	melibiose:sodium symporter; Provisional	95.95
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.89
PRK10642	490	proline/glycine betaine transporter; Provisional	95.88
PF12832	77	MFS_1_like: MFS_1 like family	95.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	95.79
PRK10133	438	L-fucose transporter; Provisional	95.67
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	95.67
KOG0254	513	consensus Predicted transporter (major facilitator	95.59
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	95.56
PRK11043	401	putative transporter; Provisional	95.3
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	95.28
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.08
PLN00028	476	nitrate transmembrane transporter; Provisional	94.85
KOG3626	735	consensus Organic anion transporter [Secondary met	94.78
PRK11462	460	putative transporter; Provisional	94.75
PTZ00207	591	hypothetical protein; Provisional	94.11
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	93.7
COG0477	338	ProP Permeases of the major facilitator superfamil	93.7
KOG2532	466	consensus Permease of the major facilitator superf	93.44
PRK11652	394	emrD multidrug resistance protein D; Provisional	93.41
TIGR00901	356	2A0125 AmpG-related permease.	93.32
KOG0569	485	consensus Permease of the major facilitator superf	93.29
KOG2563	480	consensus Permease of the major facilitator superf	93.22
PRK10077	479	xylE D-xylose transporter XylE; Provisional	93.15
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	92.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	92.46
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	92.32
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.24
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	91.6
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	91.51
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	91.31
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	91.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	90.55
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	89.87
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	89.74
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	89.66
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	89.41
PF12832	77	MFS_1_like: MFS_1 like family	89.12
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	87.78
PRK15462	493	dipeptide/tripeptide permease D; Provisional	87.59
TIGR00788	468	fbt folate/biopterin transporter. The only functio	87.23
PRK09584	500	tppB putative tripeptide transporter permease; Rev	82.57
PRK03612	521	spermidine synthase; Provisional	82.46
KOG2325	488	consensus Predicted transporter/transmembrane prot	81.79
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	80.93
TIGR00805	633	oat sodium-independent organic anion transporter.	80.56

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=100.00  E-value=1.2e-69  Score=576.64  Aligned_cols=361  Identities=34%  Similarity=0.544  Sum_probs=307.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      |..++||++|++|+||||+|+||+||+++.++| |++++|+|++++++..++|||.+|.|+||.+|+++++.+.++|+++
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            457899999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccC--CCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTS--SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~--~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      ++++|+++...+......  ++.....+|+++++++|+++++++++++++||||||+|+++| +.+|+++|++|||||++
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~-~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGD-PGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCC-hhhHHHHHHHHHHHHHH
Confidence            999988755444333211  234456788889999999999999999999999999999654 56999999999999999


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccccccccccCCCCCCC------CCCCC
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISS--GVLDRAKCSQSCCRTSNEG------PVPDA  375 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~--~~l~~~~~~~~~~~~~~~~------~~~~~  375 (512)
                      ||++||++.|++++..|+..++.+.+++|++|+   .+|++++.++|+  |+++.++++++.+.+.+++      ..++.
T Consensus       161 ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~---~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFASPVIAAIFIAGWNLASV---FVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSI  237 (432)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhH
Confidence            999999999999999999988888777666654   555678888874  5554443322211111110      01111


Q ss_pred             cchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 010361          376 DNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYL  455 (512)
Q Consensus       376 ~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L  455 (512)
                      .+..++.++++++||+.|++||++++++++++||||| ++||++|++|++++|+++..+|++|+.|++.|++||+++|++
T Consensus       238 ~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TV-Lsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l  316 (432)
T PF06963_consen  238 LKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTV-LSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWL  316 (432)
T ss_pred             HHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1223456677889999999999999999999999998 789999999999999999999999999999999999999999


Q ss_pred             HHhhChhhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHhhccccccC
Q 010361          456 VRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLS-QQNPLLFFLCLIVSMPFYLHSYR  512 (512)
Q Consensus       456 ~rRlG~~ragl~~l~~Q~~~L~~~v~~f~~gs~s-~~~~~~~f~~~i~~sr~gLw~y~  512 (512)
                      +||+|+.|+|+|++++|++||.+||+.||....+ +..+.+.|++.|++||+|||+||
T Consensus       317 ~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fD  374 (432)
T PF06963_consen  317 MKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFD  374 (432)
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999988854333 35678899999999999999998

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-42  Score=353.07  Aligned_cols=350  Identities=23%  Similarity=0.339  Sum_probs=278.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ..+.-..||.||++++||||+|+|++.|++..++| |++.+++|+++.....+++||.+|.|+|+.+|+|+++..-++||
T Consensus        25 ls~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqN  104 (503)
T KOG2601|consen   25 LSSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQN  104 (503)
T ss_pred             ccceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhcc
Confidence            44556779999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccC--CCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTS--SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~--~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      +++.++++++...+......  ........++.+...+++.++++.+.++.+||||++++.+++.+..|+++|+.+|+||
T Consensus       105 lSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iD  184 (503)
T KOG2601|consen  105 LSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGID  184 (503)
T ss_pred             HHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhh
Confidence            99777766654433322100  1111123344555789999999999999999999999977666778999999999999


Q ss_pred             HHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cccccccccc-----------CCCC-
Q 010361          302 LLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV--LDRAKCSQSC-----------CRTS-  367 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~--l~~~~~~~~~-----------~~~~-  367 (512)
                      +.+|+++|+..|.++++.+......+-   .+|+..++.++++++.++|.+.  ++.++..+..           |..+ 
T Consensus       185 q~tn~Lapv~tg~Iitfvsl~~~~g~f---~~w~~vsm~~ey~ll~~vy~g~palavs~~~k~~rs~~~q~~~~~~~~s~  261 (503)
T KOG2601|consen  185 QSTNLLAPVITGLIITFVSLRASAGTF---AAWALVSMWVEYWLLISVYIGVPALAVSKGRKNLRSKESQVELRDCQSSF  261 (503)
T ss_pred             hhhhchhhhhhcccceeechhhhhhhh---HHHHHHHHHHHHHHHHHHHhCCcHHhhhcchhhhhhhhheeeeecCCccc
Confidence            999999999999999999876543332   2466667777778888887543  3322211100           0000 


Q ss_pred             ------CC---CCCCCCc----chhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchh
Q 010361          368 ------NE---GPVPDAD----NIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSII  434 (512)
Q Consensus       368 ------~~---~~~~~~~----~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~i  434 (512)
                            .+   ++.++..    ...+-..+..+.+|+.|++||++++.+..+++|+++ ++|+.+|+.++...|.|-..+
T Consensus       262 ~v~~~~s~~~~~~~~~~~~~~~~l~~~~~~sF~~~w~~y~nq~vvl~g~slallf~tv-l~f~~L~t~~~~~~G~p~~i~  340 (503)
T KOG2601|consen  262 PVAGTHSEGFMTNLASRYGILVILPRFSISSFRSAWRVYFNQEVVLPGVSLALLFFTV-LGFGVLMTATLFWPGSPMYII  340 (503)
T ss_pred             ccccccceeeeccccccCccccccchhhhHHHHhHHHhhccCeeeehhhHHHHHHHHH-HhhheeeeeeeecCCCCceeh
Confidence                  00   0000000    001113456889999999999999999999999999 799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhhccccccC
Q 010361          435 GGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVSMPFYLHSYR  512 (512)
Q Consensus       435 G~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~~L~~~v~~f~~gs~s~~~~~~~f~~~i~~sr~gLw~y~  512 (512)
                      |+.++..+..|+.+++.++...+|.++.|+|.|..|.|+.              -+.-+.+.|+..|+.||+|||+||
T Consensus       341 gi~~g~Sa~tg~~~tv~~~~~~~~~nl~rtg~ws~~sq~s--------------v~~isv~ll~agVaaaR~GLW~fD  404 (503)
T KOG2601|consen  341 GIGRGISAGTGLAATVHYPLMQSRTNLLRTGLWSFWSQDS--------------VSKISVYLLFAGVAAARLGLWMFD  404 (503)
T ss_pred             hhccCcchhhhhhhhhhcccccCccCCCcceehhhccccc--------------chhHHHHHHHHHHHHHHhhHHhcc
Confidence            9999999999999999999999999999999999998876              123355777788999999999998

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=9.8e-33  Score=301.39  Aligned_cols=287  Identities=19%  Similarity=0.132  Sum_probs=224.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          142 TPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       142 ~~~~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      +|.+|++|++||+++++|++||.++.+|+++++..+++|+..+|++.++.++|.+++++++|+++||+||||+|+.+|++
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~   84 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL   84 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence            57799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      +.+..++. ++  .. ..+    ....+.+++..++.|+...++.++.+..++     .++++|   +|.++|+.++.+.
T Consensus        85 ~~~~~~~L-~~--l~-~~~----~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip-----~lV~~~---~L~~A~al~s~~~  148 (524)
T PF05977_consen   85 RALVALLL-AV--LA-FFG----LLSPWLLLILTFLLGIGSAFFNPAWQAIIP-----ELVPKE---DLPAANALNSISF  148 (524)
T ss_pred             HHHHHHHH-HH--HH-HhC----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccHh---hHHHHHHHHHHHH
Confidence            86642221 11  11 111    122345677888999999999999988764     488874   8999999999999


Q ss_pred             HHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHH
Q 010361          302 LLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV  381 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (512)
                      +++.++||.+||++++.+|+...+    .+|+.++...++   ++.+++.+     ++++         +.     ..++
T Consensus       149 niar~iGPalgG~Lva~~G~~~~f----~inalsfl~~i~---~l~~~~~~-----~~~~---------~~-----~~e~  202 (524)
T PF05977_consen  149 NIARIIGPALGGILVAFFGAAAAF----LINALSFLISIL---ALLRWKPP-----PPPS---------SL-----PRER  202 (524)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHcccc-----cccc---------cc-----chhh
Confidence            999999999999999998765443    445455543332   22332111     1000         00     1235


Q ss_pred             hHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       382 ~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                      .++++++|+||++++|.++..+..+.+++.+..++.++++.|.++ +|.++..||++.++.++|+++|+++.+++.+|++
T Consensus       203 ~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~  282 (524)
T PF05977_consen  203 FFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLS  282 (524)
T ss_pred             hhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            788999999999999998887665544443323455677778775 7999999999999999999999999999999999


Q ss_pred             hhhHHHHHHH
Q 010361          461 ILKAGAAGLI  470 (512)
Q Consensus       461 ~~ragl~~l~  470 (512)
                      ..+....+..
T Consensus       283 ~~~lv~~~~~  292 (524)
T PF05977_consen  283 SRRLVLLASL  292 (524)
T ss_pred             cchhhHHHHH
Confidence            8776555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=3e-19  Score=187.45  Aligned_cols=274  Identities=19%  Similarity=0.113  Sum_probs=190.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       146 ~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      +++|+.++.+++++.+||.+..++++.++.+.+.+...++....+..+|..+++|++|.++||++|||+++.+++++.+.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~   81 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLG   81 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHH
Confidence            57899999999999999999999999887666668888999999999999999999999999999999999999887553


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                         ++.+ .+.  .     +    . ++.-++.|..+....++.+..+. |    ++++   +++.++|+.+......+.
T Consensus        82 ---~~~~-~~~--~-----~----~-~~~r~l~G~~~a~~~pa~~a~i~-~----~~~~---~~~~~a~~~~~~~~~~~~  137 (393)
T PRK11195         82 ---CLLM-LFG--I-----H----P-LLAYGLVGIGAAAYSPAKYGILT-E----LLPG---EKLVKANGWMEGSTIAAI  137 (393)
T ss_pred             ---HHHH-HHH--H-----H----H-HHHHHHHHHHHHHHHHHHHHHHH-H----HcCH---HHHHHHHHHHHHHHHHHH
Confidence               1111 111  0     0    1 23334567777777776665443 3    5555   389999999999999999


Q ss_pred             HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (512)
                      ++||.++|.+.+.. .    ...+.++...+...+   .....+  |+.+.++++           .+.   .....+++
T Consensus       138 ~~Gp~lgG~l~~~~-~----~~~~~i~~~~~~~~~---~~~~~l--~~~~~~~~~-----------~~~---~~~~~~~~  193 (393)
T PRK11195        138 LLGTVLGGALADPH-A----EAALAVCALIYLLAA---LFNLFI--PRLGARRPG-----------QSW---NPIALLRD  193 (393)
T ss_pred             HHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHH---HHHhcC--CCCcccccc-----------cCC---CHHHHHHH
Confidence            99999999998853 1    111222221111111   111222  211100000           000   01234667


Q ss_pred             HHHhHhhhhcCcchhHHHHHHH-HHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          386 IKLGWKEYMQQPVLPASLAYVL-LCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       386 i~eG~~~y~~qpvl~asla~al-L~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      .++++++++++|.++..+.... .++.. .....++..|+.+ .|+++.++|.+.+..++|+++|+++++++.+|.+..+
T Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~  272 (393)
T PRK11195        194 FFHACRVLWRDKLGRFSLAGTTLFWGAG-ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR  272 (393)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            7889999999998877654433 23221 2233345566664 7999999999999999999999999999999888776


Q ss_pred             HHHHH
Q 010361          464 AGAAG  468 (512)
Q Consensus       464 agl~~  468 (512)
                      ....+
T Consensus       273 ~~~~g  277 (393)
T PRK11195        273 VLPAG  277 (393)
T ss_pred             hHHHH
Confidence            55444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.82  E-value=4.5e-18  Score=200.42  Aligned_cols=277  Identities=15%  Similarity=0.037  Sum_probs=193.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCh-----hHHHHHHHHHHHHHHHccccceeeecccCChhHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIA-LLHPSL-----LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICL  218 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~-~l~~Sl-----l~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~  218 (512)
                      +.++|++||.+++++.+||.+..++++.++. .++.+.     ..+++...+..+|+++++|++|.++||++||++|+..
T Consensus         9 ~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~   88 (1140)
T PRK06814          9 KSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKIL   88 (1140)
T ss_pred             hccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHH
Confidence            6789999999999999999999999887765 443333     6688888899999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHH
Q 010361          219 NTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN  298 (512)
Q Consensus       219 dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~  298 (512)
                      +.+..+..++.  +  +.+...    +  .+.+++..++.|..+.++.++.+..+ +|    +++++   ++.++|+.++
T Consensus        89 ~~~~~~~~~~~--~--~~~~~~----s--~~~l~~~~~l~gi~~a~~~p~~~a~l-~~----~~~~~---~~~~a~~~~~  150 (1140)
T PRK06814         89 KFAEIGIAALA--I--YGFHLN----S--VPLLFAALFLMGIHSALFGPIKYSIL-PD----HLNKD---ELLGANALVE  150 (1140)
T ss_pred             HHHHHHHHHHH--H--HHHHHh----h--HHHHHHHHHHHHHHHHhhchHHHHhh-Hh----hcCcc---ccchhhHHHH
Confidence            76654431111  1  111111    1  34566677788888888888777655 34    55543   8999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcch
Q 010361          299 RIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNI  378 (512)
Q Consensus       299 ~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  378 (512)
                      ....++.++||+++|+++...+....+.. .   +......+   .+..++  ++   .++..+       +.+.     
T Consensus       151 ~~~~ig~~igp~l~g~l~~~~~~~~~~~~-~---~~~~~~~~---~~~~~~--~~---~~~~~~-------~~~~-----  206 (1140)
T PRK06814        151 AGTFIAILLGTIIGGLATISGNFVILVAL-L---MGIAVLGW---LASLFI--PK---TGNAAP-------DLKI-----  206 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHH-H---HHHHHHHH---HHHhhC--CC---CCCCCC-------CCee-----
Confidence            99999999999999999998765433211 1   11111111   111222  11   110000       0000     


Q ss_pred             hHHhHHHHHHhHhhhhcCcchhHHHHH-HHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010361          379 VDVGIEAIKLGWKEYMQQPVLPASLAY-VLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLV  456 (512)
Q Consensus       379 ~~~~~~~i~eG~~~y~~qpvl~asla~-alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~  456 (512)
                      ..+..++.++++++.+++|.++..+.. .+.++.. ..+.+.++.|+++ .|.++..+|++.+..++|+++|.++.+++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~  285 (1140)
T PRK06814        207 DRNIIRSTITLLKYAKADKRIWLAILGISWFWLVG-AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLS  285 (1140)
T ss_pred             ccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            112446678899999999988776443 3444332 3445677888876 799999999999999999999999999998


Q ss_pred             HhhChhhH
Q 010361          457 RRLGILKA  464 (512)
Q Consensus       457 rRlG~~ra  464 (512)
                      +|.+..+.
T Consensus       286 ~~~~~~~~  293 (1140)
T PRK06814        286 EGRITLLY  293 (1140)
T ss_pred             CCceeeee
Confidence            77665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.79  E-value=3.1e-16  Score=157.96  Aligned_cols=283  Identities=14%  Similarity=0.104  Sum_probs=192.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~l  228 (512)
                      |+.++.+++++.+++.+...++|+++.+...+..++++...+..++.++.+|+.|.+.||++|||+++.+.++..+.   
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~---   77 (365)
T TIGR00900         1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL---   77 (365)
T ss_pred             CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH---
Confidence            56789999999999999999999999887669999999999999999999999999999999999999887664332   


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilG  308 (512)
                       ..+..+.....  ..+  .+.+++..++.|.......++....+     +.+.++   ++..++|+..+....++.++|
T Consensus        78 -~~~~~~~~~~~--~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~g~~~g  144 (365)
T TIGR00900        78 -VAVLPFVALLG--GLN--IWQVYVLAGILAIAQAFFTPAYQAML-----PDLVPE---EQLTQANSLSQAVRSLFYIVG  144 (365)
T ss_pred             -HHHHHHHHHcC--CCc--HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCH---HHHHHHHhHHHHHHHHHHHHH
Confidence             11111111111  011  23345555566666666665554332     335554   379999999999999999999


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHH
Q 010361          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (512)
Q Consensus       309 P~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (512)
                      |.++|.+....+......+....   .+...+    .+..+..++.+  +++         + + +   ..++..++.++
T Consensus       145 ~~l~~~l~~~~g~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~--~~~---------~-~-~---~~~~~~~~~~~  201 (365)
T TIGR00900       145 PGIGGLMYATLGIKWAIWVDAVG---FAISAL----LIVSVRIPELA--ASE---------I-Q-A---LSNAVLRDTRE  201 (365)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH---HHHHHH----HHHhcccccCC--Ccc---------c-c-c---cchhHHHHHHh
Confidence            99999998877654333222211   111111    11112111110  000         0 0 0   01123456778


Q ss_pred             hHhhhhcCcchhHHHHHHHHHHHhhhhhh-HHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHH
Q 010361          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPG-SLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA  466 (512)
Q Consensus       389 G~~~y~~qpvl~asla~alL~~tvll~~~-~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl  466 (512)
                      +++..+++|.++..+....++........ ..++.|.++ .|.++..+|.+.+..++++++|.++.+++.||.|..+...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       202 GIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMT  281 (365)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence            89999999988776554443332212232 455666665 7999999999999999999999999999999999888766


Q ss_pred             HHHH
Q 010361          467 AGLI  470 (512)
Q Consensus       467 ~~l~  470 (512)
                      .+..
T Consensus       282 ~~~~  285 (365)
T TIGR00900       282 GAIF  285 (365)
T ss_pred             HHHH
Confidence            5543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.79  E-value=5.6e-17  Score=170.20  Aligned_cols=282  Identities=16%  Similarity=0.088  Sum_probs=192.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      ++|+++.++++++++.+++.+..+++|+++.+.+.+..+++.......++.++.++++|.++||++||+++....++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~   94 (417)
T PRK10489         15 THPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL   94 (417)
T ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence            67899999999999999999999999999988888999999999999999999999999999999999999888766544


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                      ..... ..  .. ....  .+  .+.+++..++.|....+..++.+..     ++.++++   ++..++|+.......++
T Consensus        95 ~~~~~-~~--~~-~~~~--~~--~~~l~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~g  158 (417)
T PRK10489         95 GFIGL-AL--NA-FLPE--PS--LLAIYLLGLWDGFFGSLGVTALLAA-----TPALVGR---ENLMQAGAITMLTVRLG  158 (417)
T ss_pred             HHHHH-HH--HH-HcCC--Cc--HHHHHHHHHHHHHHHHHHHHHHhhh-----hhhccCH---HHHHHHHHHHHHHHhHH
Confidence            21111 11  01 1111  11  2233444445565555554444433     3335554   37899999999999999


Q ss_pred             HHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHH
Q 010361          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (512)
                      .++||.++|.++...+......+....   .+.. .   .+..++  ++.   ++++        +   +.    ++..+
T Consensus       159 ~~~g~~l~g~l~~~~~~~~~~~~~~~~---~~~~-~---~~~~~l--~~~---~~~~--------~---~~----~~~~~  211 (417)
T PRK10489        159 SVISPALGGLLIAAGGVAWNYGLAAAG---TFIT-L---LPLLRL--PAL---PPPP--------Q---PR----EHPLR  211 (417)
T ss_pred             HHhHHHHHHHHHHHHhhHHHHHHHHHH---HHHH-H---HHHHhC--CCC---CCCC--------c---cc----ccchH
Confidence            999999999998876544333222211   1111 1   122222  111   1000        0   00    11234


Q ss_pred             HHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       385 ~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      +.++++++.+++|.++..+...+++... .++....+.|.++ .|+++..+|++.+..++++++|.++.+++.+|.+..+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~  290 (417)
T PRK10489        212 SLLAGFRFLLASPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL  290 (417)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch
Confidence            5678899999999877655444433322 3444566778877 8999999999999999999999999999998877666


Q ss_pred             HHHHHHH
Q 010361          464 AGAAGLI  470 (512)
Q Consensus       464 agl~~l~  470 (512)
                      ....+..
T Consensus       291 ~l~~~~~  297 (417)
T PRK10489        291 LMLLSTL  297 (417)
T ss_pred             HHHHHHH
Confidence            5554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.67  E-value=2.3e-14  Score=168.33  Aligned_cols=285  Identities=14%  Similarity=0.065  Sum_probs=185.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP---SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~---Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      ++++|+.++++++++.++|++...++..++...++   +...+++...+..++.+++++++|.++||++||++|+.+.++
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~   86 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHH
Confidence            67899999999999999999998888877765544   456678888899999999999999999999999999998876


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      ..+..++.    .+....    .+  .+.+++..++.|....++.++....+ .|    +++++   ++.++|+......
T Consensus        87 ~~~~~~~~----~~~~~~----~~--~~~l~~~r~l~G~~~~~~~~~~~~~i-~~----~~~~~---~r~~~~~~~~~~~  148 (1146)
T PRK08633         87 EVGLTLLI----VLAYYL----GW--FWLAFAVTFLLGAQSAIYSPAKYGII-PE----LVGKE---NLSRANGLLEAFT  148 (1146)
T ss_pred             HHHHHHHH----HHHHHH----cc--HHHHHHHHHHHHHHHHhhchHHHhhh-HH----hcCcc---cchhhhhHHHHHH
Confidence            64432221    111111    11  23445555666777777666554333 33    55543   7999999999999


Q ss_pred             HHHHHHhHHHHHHHHhh--------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCC
Q 010361          302 LLCEIAGASLFGILLSK--------YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVP  373 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~--------~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~  373 (512)
                      .++.++||+++|++...        ++......+  ...+......+   .....+  ++.+..++..        +.. 
T Consensus       149 ~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~--~~~~~~~~~~--------~~~-  212 (1146)
T PRK08633        149 IVAILAGTALFSFLFESVNGNTPSEILGRIAPAG--LVLLAVAVLGL---IFAYRL--PKVPAAAPEV--------FDK-  212 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchHHHH--HHHHHHHHHHH---HHHhcC--cCCCCCCccc--------ccc-
Confidence            99999999999999875        221111111  11111111111   111111  1111000000        000 


Q ss_pred             CCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcc-hhHHHHHHHHHHHHHHHHH
Q 010361          374 DADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPS-IIGGFSGLCASMGVAATFL  451 (512)
Q Consensus       374 ~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~-~iG~~~g~gavgGLlGt~l  451 (512)
                      .    .....++.+++++..+++|.++..+....+++.....+...++.|+.+ .|+++. ..|++.+..++|+++|+++
T Consensus       213 ~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~  288 (1146)
T PRK08633        213 K----KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLL  288 (1146)
T ss_pred             c----ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            0    011245567889999999977665443333222212344456667764 799999 9999999999999999999


Q ss_pred             HHHHHHhhChhhHHHH
Q 010361          452 SAYLVRRLGILKAGAA  467 (512)
Q Consensus       452 ap~L~rRlG~~ragl~  467 (512)
                      .+++.+|++..+...+
T Consensus       289 ~g~l~~r~~~~~~~~~  304 (1146)
T PRK08633        289 AGRLSGRHIELGLVPL  304 (1146)
T ss_pred             HHHHhCCceEccchhH
Confidence            9999999886554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.60  E-value=1.9e-13  Score=137.31  Aligned_cols=278  Identities=18%  Similarity=0.148  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHH
Q 010361          152 LYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSA  230 (512)
Q Consensus       152 L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~  230 (512)
                      |+.+.+++.++..+...++|+++...++ |...++....+..++..+++++.|.++||++||++++.+.++..+.    +
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~----~   76 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG----S   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH----H
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH----H
Confidence            5788999999999999999987777777 8999999999999999999999999999999999999998776442    1


Q ss_pred             HHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHH
Q 010361          231 AMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGAS  310 (512)
Q Consensus       231 ~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~  310 (512)
                      .+..+.   .    +  .+.+++..++.|.......++....+. |    ..+++   +..++++.......++.++||.
T Consensus        77 ~~~~~~---~----~--~~~~~~~~~l~g~~~~~~~~~~~~~i~-~----~~~~~---~~~~~~~~~~~~~~~g~~~g~~  139 (352)
T PF07690_consen   77 LLLAFA---S----N--FWLLLIARFLLGIGSGFFSPASNALIA-D----WFPPE---ERGRAFGILSAGFSLGSILGPL  139 (352)
T ss_dssp             HHHHHH---C----C--HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----CCCTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhh---h----h--HHHHhhhcccccccccccccccccccc-c----cchhh---hhhhccccccchhhhhhhcccc
Confidence            111111   1    1  233445555677776676666655443 3    44443   7999999999999999999999


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhH
Q 010361          311 LFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGW  390 (512)
Q Consensus       311 lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~  390 (512)
                      ++|.+....+......+.....+...   ++   .....  ++.+++++.+        .+.++.    ++..+++++++
T Consensus       140 l~~~l~~~~~~~~~~~~~~~~~~~~~---il---~~~~~--~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~  199 (352)
T PF07690_consen  140 LGGFLISYFGWRWAFLISAILSLIAA---IL---FILFL--PEPPPPRERE--------SPKESE----SKKPKPLKPGF  199 (352)
T ss_dssp             HHHHCCCHCHHCCHHHHHHHHHHHHH---HH---HHCCC-----STTTT----------SSTTTT------HHHCCCH-C
T ss_pred             hhhhhhhccccccccccccchhhhhh---hh---Hhhhh--hhcccccccc--------cccccc----ccccccccccc
Confidence            99999876664433333222222211   10   00111  1000000000        000000    11223334478


Q ss_pred             hhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHH-HhCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH
Q 010361          391 KEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLN-PSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (512)
Q Consensus       391 ~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~-~lGls-~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~  468 (512)
                      +..+++|.++..+...+++......+...+..|+. ..|++ +...|.+.+..+++++.+.++.+++.+|+|..+...+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (352)
T PF07690_consen  200 KSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIA  279 (352)
T ss_dssp             THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            88899997653222222222121234556666744 58999 79999999999999999999999999999987766555


Q ss_pred             HH
Q 010361          469 LI  470 (512)
Q Consensus       469 l~  470 (512)
                      ..
T Consensus       280 ~~  281 (352)
T PF07690_consen  280 IL  281 (352)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.55  E-value=3.9e-12  Score=132.28  Aligned_cols=281  Identities=13%  Similarity=0.022  Sum_probs=170.1

Q ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHH
Q 010361          141 ATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLN  219 (512)
Q Consensus       141 ~~~~~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~d  219 (512)
                      ..+.-++++..+.++++++.++..+....+|+++...++ |...++....+..++..+++|+.|.++||++|||+++.++
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (399)
T PRK05122          9 SGLRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGL   88 (399)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHH
Confidence            344466789999999999999999999999999888887 9999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHH
Q 010361          220 TVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR  299 (512)
Q Consensus       220 lvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~  299 (512)
                      ++..+.   +..+ ........ ........+++.-++.|+......++....+     +...++   ++..++++....
T Consensus        89 ~~~~~~---~~~~-~~~~~~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-----~~~~~~---~~r~~~~~~~~~  155 (399)
T PRK05122         89 CGCALS---GLLY-LLAGLLAA-WPVLSLLLLLLGRLLLGIGESLAGTGSILWG-----IGRVGA---LHTGRVISWNGI  155 (399)
T ss_pred             HHHHHH---HHHH-HHhhhhhc-cchhHHHHHHHHHHHHHhhHHhhcchHHHHH-----HhhcCh---hhhccchhhhhh
Confidence            765432   1111 11100100 0000011233334466666666555443322     224444   267889998888


Q ss_pred             HHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchh
Q 010361          300 IDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIV  379 (512)
Q Consensus       300 Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  379 (512)
                      ....+.++||.++|.+....+......+..   ...   .+. .+...+  .+  + .++ +          +++ +   
T Consensus       156 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~---~~~---~~~-~~~~~~--~~--~-~~~-~----------~~~-~---  208 (399)
T PRK05122        156 ATYGALAIGAPLGVLLYHWGGLAGLGLLIM---LLA---LLG-LLLARP--RP--A-VPP-V----------KGE-R---  208 (399)
T ss_pred             hhhHHHHHHHHHHHHHHHcccHHHHHHHHH---HHH---HHH-HHHHhc--CC--C-CCC-C----------Ccc-c---
Confidence            888899999999999988776432111111   111   111 111111  11  0 000 0          000 0   


Q ss_pred             HHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          380 DVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       380 ~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                      .    +.++.++.++++..     ...+..+.. ......++.|.++.|++  ..|...+..++++++|.++.+++.+|+
T Consensus       209 ~----~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~  276 (399)
T PRK05122        209 L----PFRRVLGRVWPYGM-----GLALASIGF-GTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRL  276 (399)
T ss_pred             h----hHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1    11222222222211     111111111 12233455666667764  446666778888999999999999999


Q ss_pred             ChhhHHHHHHHHHH
Q 010361          460 GILKAGAAGLIFQA  473 (512)
Q Consensus       460 G~~ragl~~l~~Q~  473 (512)
                      |..|....+.....
T Consensus       277 ~~~~~~~~~~~~~~  290 (399)
T PRK05122        277 GGLRVAIVSLLVEI  290 (399)
T ss_pred             ccHHHHHHHHHHHH
Confidence            98887666554333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.55  E-value=1.5e-11  Score=127.78  Aligned_cols=266  Identities=14%  Similarity=0.085  Sum_probs=166.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHH
Q 010361          144 AHPEGLYALYACCLAGNLVEQLWNFAWPSA--IALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (512)
Q Consensus       144 ~~~r~f~~L~~g~~lS~~Gdri~~FAlpL~--~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dl  220 (512)
                      .|+++++.+++.-.++..+.....+..|.+  +....+ |...++....+..++.++..++.|.++||++||+++....+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~   81 (394)
T PRK11652          2 KRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMS   81 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            467889999999888888886666655544  234445 88899999899999999999999999999999999888765


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH
Q 010361          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (512)
Q Consensus       221 vq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I  300 (512)
                      ...+.      .+.... .    .+  .+.+++..++.|.......+.... +.+|    ..++   +++.++|+..+..
T Consensus        82 ~~~~~------~~~~~~-~----~~--~~~l~~~~~~~g~~~~~~~~~~~~-~~~~----~~~~---~~~~~~~~~~~~~  140 (394)
T PRK11652         82 IFILG------TLVALF-A----HS--LTVLIAASAIQGLGTGVGGVMART-LPRD----LYEG---TQLRHANSLLNMG  140 (394)
T ss_pred             HHHHH------HHHHHH-H----cc--HHHHHHHHHHHHhhhhHHHHHHHH-HHHH----hcCH---HHHHHHHHHHHHH
Confidence            43221      111111 1    11  122333334444443333333222 2233    2333   3788999999888


Q ss_pred             HHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhH
Q 010361          301 DLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVD  380 (512)
Q Consensus       301 dl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (512)
                      ..++.++||.++|.+.+..+......+...   ..+...+   .....+  ++.   ++ .           ++ +    
T Consensus       141 ~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~---~~~~~~~---~~~~~~--~~~---~~-~-----------~~-~----  192 (394)
T PRK11652        141 ILVSPLLAPLIGGLLTTLFGWRACYLFLLL---LGAGVTF---SMARWM--PET---RP-A-----------DA-R----  192 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHHHH---HHHHHHH---HHHHhC--Ccc---Cc-c-----------cc-c----
Confidence            888999999999999886654332222111   1111111   111111  110   00 0           00 0    


Q ss_pred             HhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          381 VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       381 ~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                        .++.+++++..+++|.++..+...++.+.....+......|..+ .|+++.+.|++.....++.++|+++.+++.+|.
T Consensus       193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~  270 (394)
T PRK11652        193 --RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF  270 (394)
T ss_pred             --hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01246778888899877654443333332212233444556665 799999999999999999999999999999998


Q ss_pred             C
Q 010361          460 G  460 (512)
Q Consensus       460 G  460 (512)
                      +
T Consensus       271 ~  271 (394)
T PRK11652        271 S  271 (394)
T ss_pred             H
Confidence            7

>TIGR00897 2A0118 polyol permease family

Probab=99.53  E-value=1.4e-11  Score=129.22  Aligned_cols=279  Identities=11%  Similarity=0.025  Sum_probs=174.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      -+|.+...|.+.++..+++.+...-+|.++.+..-|...++.......+...+++++.|.++||++|||++..+.++..+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~   90 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV   90 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            45789999999999999999877777887755433888999999999999999999999999999999999988865433


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                      .   .......  ....  .+  .+.+++.-++.|............     |++...++   ++..++|+.......++
T Consensus        91 ~---~~~~~~~--~~~~--~~--~~~l~~~~~i~G~g~~~~~~~~~~-----~~~~~~~~---~~~g~~~g~~~~~~~~g  153 (402)
T TIGR00897        91 G---HAAFIVF--GLGH--AN--YPLILLFYGIRGLGYPLFAYSFLV-----WVVYNTKQ---DNLSSAVGWFWAVYSIG  153 (402)
T ss_pred             H---HHHHHHH--hccC--cc--HHHHHHHHHHHHcchHHHHhHHHH-----HHHHhCCH---HHHHHHHHHHHHHHHHH
Confidence            2   1111111  1110  11  122233333333332222222222     12223333   37899999999988888


Q ss_pred             H-HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          305 E-IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       305 k-ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      . +.||.++|.++...+.....+....   +.....++ .+.+.  ++    ++++++   +    +   + +    ..+
T Consensus       154 ~~~~g~~~~~~l~~~~g~~~~~~~~~~---~~~~~~~~-~~~~~--~~----~~~~~~---~----~---~-~----~~~  208 (402)
T TIGR00897       154 IGVFGSYYSSYAIPAFGEMNTLWSALA---FVLTGGVI-ALFSN--KD----IFTPQH---M----Q---T-R----EKF  208 (402)
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHH---HHHHHHHH-HHhcc--CC----CCCccc---c----c---C-C----cch
Confidence            6 6899999998876653222222111   11111111 11111  11    001100   0    0   0 0    012


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      ++..++++..+++|.++......+++......+....+.|+++.|+++.+.|.+.+...+++++|+++.+++.+|+|..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  288 (402)
T TIGR00897       209 SELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN  288 (402)
T ss_pred             hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            34567788899999776654333222211123444567788889999999999999999999999999999999999776


Q ss_pred             HH
Q 010361          464 AG  465 (512)
Q Consensus       464 ag  465 (512)
                      ..
T Consensus       289 ~~  290 (402)
T TIGR00897       289 TV  290 (402)
T ss_pred             HH
Confidence            54

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.52  E-value=3.8e-11  Score=125.50  Aligned_cols=279  Identities=13%  Similarity=0.023  Sum_probs=172.1

Q ss_pred             CcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          146 PEGLYAL----YACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       146 ~r~f~~L----~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      +++++.+    ..+++++..+..+....+|.+..+..-|...++.......+...+..+++|.+.||++|||++..+.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            3455554    445555555788888888876655433888888888888999999999999999999999999888754


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      -.+    .+.+..+   ..    +  .+.+++..++.|.......+.....+. |+    .++   ++..++++.+....
T Consensus        88 ~~~----~~~~~~~---~~----~--~~~l~~~~~l~G~~~~~~~~~~~~~i~-~~----~~~---~~~~~~~~~~~~~~  146 (406)
T PRK15402         88 FIL----TCLAILL---AQ----S--IEQFTLLRFLQGIGLCFIGAVGYAAIQ-ES----FEE---ADAIKITALMANVA  146 (406)
T ss_pred             HHH----HHHHHHH---Hc----c--HHHHHHHHHHHHhHhhhHHHHHHHHHH-HH----hCh---hHHHHHHHHHHHHH
Confidence            322    1111111   11    1  122333344445544444443333332 33    333   26778888888888


Q ss_pred             HHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHH
Q 010361          302 LLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV  381 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (512)
                      .++.++||.++|.+....+......+..+   ..+...+.   ....+  |+.+  ++ +           .+     +.
T Consensus       147 ~~~~~~g~~i~~~l~~~~~w~~~~~~~~~---~~~~~~~~---~~~~~--~~~~--~~-~-----------~~-----~~  199 (406)
T PRK15402        147 LLAPLLGPLVGAALIHVLPWRGMFVLFAA---LAALSFFG---LWRAM--PETA--GR-V-----------GE-----KL  199 (406)
T ss_pred             HHHHHHHHHHHHHHHHccCccHHHHHHHH---HHHHHHHH---HHHhC--CCCC--cc-c-----------cc-----cc
Confidence            88899999999999887665443322222   11111111   11111  1110  00 0           00     00


Q ss_pred             hHHHHHHhHhhhhcCcchhHHHHH-HHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          382 GIEAIKLGWKEYMQQPVLPASLAY-VLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       382 ~~~~i~eG~~~y~~qpvl~asla~-alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                      ..++..++++..+++|.++..... .+.++.. ..+....+.|+. ..|+++.++|.......+++++|.++.+++.+|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~  278 (406)
T PRK15402        200 SLKELGRDYKLVLKNRRFVAGALALGLVSLPL-LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR  278 (406)
T ss_pred             cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            124567788889999976654332 2332222 234445566665 4799999999998888889999999999999999


Q ss_pred             ChhhHHHHHHHHHH
Q 010361          460 GILKAGAAGLIFQA  473 (512)
Q Consensus       460 G~~ragl~~l~~Q~  473 (512)
                      |..|....+...+.
T Consensus       279 ~~~~~~~~~~~~~~  292 (406)
T PRK15402        279 PLRSLIRMGLWPMV  292 (406)
T ss_pred             CHHHHHHHHHHHHH
Confidence            98887666655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.49  E-value=4.5e-11  Score=125.94  Aligned_cols=266  Identities=13%  Similarity=0.006  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~  227 (512)
                      -..++++.++..++..+..--+|.++....+ |...+|+......++.++++++.|.++||++||++++.+++...+.  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~--   89 (400)
T PRK11646         12 KYFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAG--   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHH--
Confidence            3678899999999998888888888877777 9999999999999999999999999999999999999998765442  


Q ss_pred             HHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       228 ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                        +..  ... .    .+  .+.+++..++.|+....+.++.+..+. |    .+++   +++.++++..+..+.++..+
T Consensus        90 --~~~--~~~-~----~~--~~~l~~~~~l~g~~~~~~~~~~~~~~~-~----~~~~---~~~~~a~~~~~~~~~~g~~i  150 (400)
T PRK11646         90 --FAT--MAI-A----HE--PWLLWLSCILSGLGGTLFDPPRTALVI-K----LIRP---HQRGRFFSLLMMQDSAGAVI  150 (400)
T ss_pred             --HHH--HHH-h----cc--HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hcCH---HHHHHHHHHHHHHHHHHHHH
Confidence              111  111 1    11  223344445556666666555444332 3    4443   37999999999999999999


Q ss_pred             hHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHH
Q 010361          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK  387 (512)
Q Consensus       308 GP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  387 (512)
                      ||.++|.+. ..+......+...   ......++   . ... .++   .++.            +.        .++.+
T Consensus       151 g~~l~g~l~-~~g~~~~f~~~~~---~~~~~~i~---~-~~~-~~~---~~~~------------~~--------~~~~~  198 (400)
T PRK11646        151 GALLGSWLL-QYDFRLVCATGAV---LFVLAAAF---N-AWL-LPA---YKLS------------TV--------RTPVR  198 (400)
T ss_pred             HHHHHHHHH-HhhHHHHHHHHHH---HHHHHHHH---H-HHh-CCc---cccc------------cc--------chhhH
Confidence            999999998 4443322222111   11111111   1 111 111   0000            00        01245


Q ss_pred             HhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHH-HHHHHHhhChhhHHH
Q 010361          388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFL-SAYLVRRLGILKAGA  466 (512)
Q Consensus       388 eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~l-ap~L~rRlG~~ragl  466 (512)
                      ++++.++++|.++........++.........++.|+++.+.++..+|.+.+..+++++.+... .++..||.+..+...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  278 (400)
T PRK11646        199 EGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLM  278 (400)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            6788888888765543332222221112223456677777678899999998888877755544 444556676655433


Q ss_pred             H
Q 010361          467 A  467 (512)
Q Consensus       467 ~  467 (512)
                      .
T Consensus       279 ~  279 (400)
T PRK11646        279 A  279 (400)
T ss_pred             H
Confidence            3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.48  E-value=3.8e-11  Score=122.99  Aligned_cols=265  Identities=15%  Similarity=0.042  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeeccc-----CChhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010361          164 QLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHS-----PRIPA-YICLNTVQAAAQLLSAAMIIHAH  237 (512)
Q Consensus       164 ri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-----~Rr~v-mi~~dlvq~~~v~ls~~li~~~~  237 (512)
                      .+..+++|.+..+..-|..+++.+... .+|+.+ .+..|.++||+     +|||. ++.++++..+.   . ..  ..+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~---~-~~--l~~   76 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSL---L-LI--LSF   76 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHH---H-HH--HHc
Confidence            355678888887763388899999776 888876 99999999998     57775 56666543221   1 11  111


Q ss_pred             hhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 010361          238 TVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS  317 (512)
Q Consensus       238 ~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s  317 (512)
                      . .+ ..+  .+.++...++.+......+++.+.     |++..+++   ++..++|+.......+..++||.+++.+..
T Consensus        77 ~-~~-~~~--l~~l~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~---~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~  144 (356)
T TIGR00901        77 L-VP-STD--LPLLAGLAFLIAFFSATQDIALDA-----WRLEILSD---EELGYGSTIYIVGYRAGMLLSGSLALVLAS  144 (356)
T ss_pred             C-Cc-chh--HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCH---hhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1 11 111  233444444555555555555554     34446654   378999999999999999999999999988


Q ss_pred             hcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHh
Q 010361          318 KYE--------PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG  389 (512)
Q Consensus       318 ~~s--------~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG  389 (512)
                      ..+        ......+    .+......++  .. ..+ .++.++++              ++.    ++..++.+++
T Consensus       145 ~~g~~~~~~~~wr~~f~i----~ai~~l~~~~--~~-~~~-~~e~~~~~--------------~~~----~~~~~~~~~~  198 (356)
T TIGR00901       145 PEFANTGLITLWGYIFFW----TALLILPGLL--VT-LFL-AKEPQEDA--------------SVP----KPLTQAVLKP  198 (356)
T ss_pred             hcccccccccccHHHHHH----HHHHHHHHHH--HH-HHh-ccCCCccc--------------ccc----hhHHHHHHHH
Confidence            776        2222211    1111111111  11 111 11111000              000    0112345678


Q ss_pred             HhhhhcCcc---hhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHHHHHHHHHHHhhChhhHH
Q 010361          390 WKEYMQQPV---LPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCA-SMGVAATFLSAYLVRRLGILKAG  465 (512)
Q Consensus       390 ~~~y~~qpv---l~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~ga-vgGLlGt~lap~L~rRlG~~rag  465 (512)
                      ++..+++|.   +...+...+++........+.++.|+++.|+++.++|.+.+..+ +++++|.++.+++.+|+|..+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  278 (356)
T TIGR00901       199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL  278 (356)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            888888886   33322222232221123445677888889999999999888655 78899999999999999999887


Q ss_pred             HHHHHHHHH
Q 010361          466 AAGLIFQAS  474 (512)
Q Consensus       466 l~~l~~Q~~  474 (512)
                      .++...+..
T Consensus       279 ~~~~~~~~~  287 (356)
T TIGR00901       279 LLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHH
Confidence            766655544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.47  E-value=4.1e-11  Score=125.55  Aligned_cols=286  Identities=13%  Similarity=0.086  Sum_probs=175.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      +.+...|.+.+...++.....++.|.+..+..-|....+.......+..++.+++.|.++||++||+++..+.+...+. 
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~-   96 (426)
T PRK12307         18 NALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG-   96 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-
Confidence            4567788888888888888888888776555448888899999999999999999999999999999999888664332 


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                         ..+..+.       .+  .+.+++.-++.|.......+.....+ .|    ..++   ++..++++.....-.++.+
T Consensus        97 ---~~~~~~~-------~~--~~~l~~~r~l~G~g~g~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~lg~~  156 (426)
T PRK12307         97 ---TGLSGLA-------SG--VIMLTLSRFIVGMGMAGEYACASTYA-VE----SWPK---HLKSKASAFLVSGFGIGNI  156 (426)
T ss_pred             ---HHHHHHH-------hH--HHHHHHHHHHHHHHHhhHHHHHHHHH-HH----hCCH---hHhhHhhhHHHHHHhHHHH
Confidence               1111111       11  12334444445544443333322222 13    2333   3678899988888888888


Q ss_pred             HhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHH
Q 010361          307 AGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAI  386 (512)
Q Consensus       307 lGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  386 (512)
                      ++|.+++.+....+......+    .+...   ++..+....  .|+.++.++++  .++   +.+.     .+..+++.
T Consensus       157 ~~~~l~~~l~~~~~w~~~f~i----~~~~~---~~~~~~~~~--~p~~~~~~~~~--~~~---~~~~-----~~~~~~~~  217 (426)
T PRK12307        157 IAAYFMPSFAEAYGWRAAFFV----GLLPV---LLVIYIRAR--APESKEWEEAK--LSG---KGKH-----SQSAWSVF  217 (426)
T ss_pred             HHHHHHHHHcccCCHHHHHHH----HHHHH---HHHHHHHHH--CCCChHHHHhh--hhc---cccc-----cccchhhh
Confidence            888888887765554332222    11111   111111111  12111000000  000   0000     01122334


Q ss_pred             HHhHhhhhcCcchhHHHHHHHHHHHhhh---hhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          387 KLGWKEYMQQPVLPASLAYVLLCLNVVL---TPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       387 ~eG~~~y~~qpvl~asla~alL~~tvll---~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      .++++..+++|.++..+....+++....   .....++.|+++.|+++..+|.+.+..++++++|.++.+++.+|+|..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        218 SLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             hHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            4567788888877654333222221101   1334567777788999999999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q 010361          464 AGAAGLIFQ  472 (512)
Q Consensus       464 agl~~l~~Q  472 (512)
                      ....+....
T Consensus       298 ~~~~~~~~~  306 (426)
T PRK12307        298 TFSIGLLMS  306 (426)
T ss_pred             HHHHHHHHH
Confidence            766665443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.47  E-value=1.9e-10  Score=117.64  Aligned_cols=271  Identities=15%  Similarity=0.043  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHH
Q 010361          153 YACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAM  232 (512)
Q Consensus       153 ~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~l  232 (512)
                      ..-..+..++..++..++|.+..+..-|...++.......+..++.+++.|.++||++||+++..+.++..+.    ..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~----~~~   86 (385)
T TIGR00710        11 GCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS----SLG   86 (385)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH----HHH
Confidence            3334556778888888888877665558888999999999999999999999999999999998876543221    111


Q ss_pred             HHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 010361          233 IIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLF  312 (512)
Q Consensus       233 i~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lg  312 (512)
                      ..+   .    .+  .+.+++..++.|.......+..+..+ .||    .++   ++..++++.......+..++||.++
T Consensus        87 ~~~---~----~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~----~~~---~~~~~~~~~~~~~~~~g~~~g~~~~  149 (385)
T TIGR00710        87 LAL---S----NN--IETLLVLRFVQAFGASAGSVISQALV-RDI----YPG---EELSRIYSILMPVLALAPAVAPLLG  149 (385)
T ss_pred             HHH---H----cc--HHHHHHHHHHHHcchhHHHHHHHHHH-HHh----cCc---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111   1    11  12233344455555555544444333 343    333   3788999999999999999999999


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhh
Q 010361          313 GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKE  392 (512)
Q Consensus       313 GlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~  392 (512)
                      |.+....+......+...   ..+.....   ....  .++.   ++.+        + + +       ..++..+.++.
T Consensus       150 ~~l~~~~~~~~~~~~~~~---~~~~~~~~---~~~~--~~~~---~~~~--------~-~-~-------~~~~~~~~~~~  201 (385)
T TIGR00710       150 GYILVWLSWHAIFAFLSL---AGILLSAL---IFFI--LPET---LPYE--------A-R-I-------QISTYFETFLL  201 (385)
T ss_pred             HHHHHHcCHHHHHHHHHH---HHHHHHHH---HHHh--CCCC---CCCc--------c-c-C-------CHHHHHHHHHH
Confidence            999887664332222111   11111111   1111  1111   1000        0 0 0       01122445667


Q ss_pred             hhcCcchhHHHHHH-HHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361          393 YMQQPVLPASLAYV-LLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       393 y~~qpvl~asla~a-lL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~  470 (512)
                      .+++|.++...... +.+... ..+....+.|.. +.|+++...|.+.+..++++++|.++.+++.+|+|..+...++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~  280 (385)
T TIGR00710       202 LLKSKMFWGYALIYGASFGGF-FAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLI  280 (385)
T ss_pred             HHcCchhHHHHHHHHHHHHHH-HHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            77888666543332 222221 222233445555 579999999999999999999999999999999999887666544


Q ss_pred             HHH
Q 010361          471 FQA  473 (512)
Q Consensus       471 ~Q~  473 (512)
                      ...
T Consensus       281 ~~~  283 (385)
T TIGR00710       281 LFA  283 (385)
T ss_pred             HHH
Confidence            333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=9.4e-11  Score=121.52  Aligned_cols=277  Identities=13%  Similarity=0.061  Sum_probs=162.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHH
Q 010361          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSL-----LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (512)
Q Consensus       146 ~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sl-----l~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dl  220 (512)
                      ++++..+|.+.+++.+++.++...+|.+..+..-+.     ..++.......+...+.+|+.|.+.||++||++++.+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            457889999999999999999999999987753232     235777777888999999999999999999999988765


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH
Q 010361          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (512)
Q Consensus       221 vq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I  300 (512)
                      ...+.    ..+  ... .    .+  .+.+++..++.|......... ...+ .+    ..++   ++..++|+.....
T Consensus        93 ~~~~~----~~~--~~~-~----~~--~~~~~~~~~~~g~~~~~~~~~-~~~~-~~----~~~~---~~~~~~~~~~~~~  150 (408)
T PRK09874         93 GMGIV----MVL--MGL-A----QN--IWQFLILRALLGLLGGFVPNA-NALI-AT----QVPR---NKSGWALGTLSTG  150 (408)
T ss_pred             HHHHH----HHH--HHH-H----hh--HHHHHHHHHHHHHhhhhHHhH-HHHH-HH----hcCH---hhhhHHHHHHHHH
Confidence            43321    111  111 1    11  122333333444433333222 2222 22    3333   3678899999999


Q ss_pred             HHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhH
Q 010361          301 DLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVD  380 (512)
Q Consensus       301 dl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (512)
                      ..+..++||.++|.+....+......+...   ..+...+.   ....+  ++.  .++.+          +++      
T Consensus       151 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~--~~~--~~~~~----------~~~------  204 (408)
T PRK09874        151 GVSGALLGPLAGGLLADSYGLRPVFFITAS---VLFLCFLV---TLFCI--REN--FQPVS----------KKE------  204 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HHHHHHHH---HHHHh--ccC--ccccc----------chh------
Confidence            999999999999999876654332222211   11111111   11111  110  00000          000      


Q ss_pred             HhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcc----hhHHHHHHHHHHHHHHHHHHHHHH
Q 010361          381 VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPS----IIGGFSGLCASMGVAATFLSAYLV  456 (512)
Q Consensus       381 ~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~----~iG~~~g~gavgGLlGt~lap~L~  456 (512)
                        ..+.++.++...+++.++..+...+.+......+...+..|..+.+.+..    ..|.+.++.+++++++....+++.
T Consensus       205 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~  282 (408)
T PRK09874        205 --MLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLG  282 (408)
T ss_pred             --hhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01123444444444444443333333222212344566677776433333    356667777888889999999999


Q ss_pred             HhhChhhHHHHHHHHH
Q 010361          457 RRLGILKAGAAGLIFQ  472 (512)
Q Consensus       457 rRlG~~ragl~~l~~Q  472 (512)
                      +|+|..+....+....
T Consensus       283 dr~g~~~~~~~~~~~~  298 (408)
T PRK09874        283 DRIGPEKILITALIFS  298 (408)
T ss_pred             hccccchhHHHHHHHH
Confidence            9999888776665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.46  E-value=8.9e-11  Score=123.09  Aligned_cols=275  Identities=16%  Similarity=0.047  Sum_probs=169.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeeccc-----CCh-hHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHS-----PRI-PAYICLNTVQ  222 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-----~Rr-~vmi~~dlvq  222 (512)
                      |..||..|.   +.-.....++|.++-+..-|.-++|++... .+| .++.|+.|.++||+     +|| +.++.++++.
T Consensus         4 ~~~l~~~~~---~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~-~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~   78 (402)
T PRK11902          4 MLLLGFASG---LPLALTSGTLQAWMTVEGLDIQTIGFFSLV-GQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL   78 (402)
T ss_pred             HHHHHHHHh---hhHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence            455665554   466788899999998763399999999665 456 58999999999999     454 5788887654


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+.    ...+.+   ... ..+  .+.+++..++.+......+++.+..+     +..+++   ++..++|+.......
T Consensus        79 ~l~----~~~l~~---~~~-~~~--~~~l~~~~~~~~~~~~~~~~~~~al~-----~~~~~~---~~r~~~~~~~~~g~~  140 (402)
T PRK11902         79 AAS----IAAMAF---CPP-HAA--LWPLAGLAVLVAFLSASQDIVFDAYS-----TDVLHP---EERGAGAAVKVLGYR  140 (402)
T ss_pred             HHH----HHHHHh---cCc-cch--HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCh---hhhhHHHHHHHHHHH
Confidence            332    111111   111 111  22334444445555556555555433     334444   378999999998889


Q ss_pred             HHHHHhHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHH
Q 010361          303 LCEIAGASLFGILLSK-YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV  381 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~-~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (512)
                      ++.++|+.+++.+.+. .+......+....   .+...+    ....+  ++.+++++              +.    ++
T Consensus       141 ~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~---~l~~~l----~~~~~--~e~~~~~~--------------~~----~~  193 (402)
T PRK11902        141 LAMLVSGGLALWLADRVLGWGNTYLLMAGL---MLAGAL----TTLWA--PEPEVPAR--------------PP----RS  193 (402)
T ss_pred             HHHHHHhHHHHHHHhcccCHHHHHHHHHHH---HHHHHH----HHHhc--CCCccccc--------------cc----ch
Confidence            9999999999999884 3544433332221   111111    11111  21111000              00    01


Q ss_pred             hHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 010361          382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGL-CASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       382 ~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~-gavgGLlGt~lap~L~rRl  459 (512)
                      ..++.+++++.+++||.++..+...+++...........+.|+. +.|+++..+|++.+. +.+++++|.++.+++.+|+
T Consensus       194 ~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~  273 (402)
T PRK11902        194 LGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL  273 (402)
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            12346778999999998877655544433210122234444554 489999999999865 4567899999999999999


Q ss_pred             ChhhHHHHHHHHHH
Q 010361          460 GILKAGAAGLIFQA  473 (512)
Q Consensus       460 G~~ragl~~l~~Q~  473 (512)
                      |..|....+...+.
T Consensus       274 g~~~~l~~~~~~~~  287 (402)
T PRK11902        274 GLYRSLMLFGVLQA  287 (402)
T ss_pred             hHHHHHHHHHHHHH
Confidence            98887665555443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.46  E-value=5.7e-11  Score=121.92  Aligned_cols=298  Identities=11%  Similarity=0.041  Sum_probs=169.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +.+.+..++.+++.+.++..+..+..|-+..+..-|..+++.......+..++.+++.|.++||++||+++..+.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~   89 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA   89 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            44567788999999999999999999977655444888999999999999999999999999999999999887654332


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                      .    ..+..+.       .+  .+.+++..++.|.......+.....+ .||.    ++   ++..++++.......++
T Consensus        90 ~----~~~~~~~-------~~--~~~l~~~~~l~G~~~~~~~~~~~~~i-~~~~----~~---~~~~~~~~~~~~~~~~g  148 (405)
T TIGR00891        90 G----TLACGFA-------PG--YITMFIARLVIGIGMGGEYGSSAAYV-IESW----PK---HLRNKASGLLISGYAVG  148 (405)
T ss_pred             H----HHHHHHh-------cc--HHHHHHHHHHHHhhhhhhhHHHHHHH-HHhC----Ch---hhhhHHHHHHHHHHHHH
Confidence            1    1111111       11  22344444555655555444433322 2433    33   37899999999999999


Q ss_pred             HHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCC--CCCCcchhHHh
Q 010361          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGP--VPDADNIVDVG  382 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  382 (512)
                      .++||.+++.+....+......+  .+.+...  .+. .+...++  |+.++.++.++..++..+..  ..+.....+..
T Consensus       149 ~~~~~~l~~~l~~~~~~~w~~~f--~~~~~~~--~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (405)
T TIGR00891       149 AVVAAQVYSLVVPVWGDGWRALF--FISILPI--IFA-LWLRKNI--PEAEDWKEKHAGKALVRTMVDILYGGEHRIANI  221 (405)
T ss_pred             HHHHHHHHHHHHHhcCccHHHHH--HHHHHHH--HHH-HHHHHhC--CCChhHHHHhhhhhhhhhHHHHHhccchhhhhh
Confidence            99999999999876552111111  1111111  111 1111221  22111000000000000000  00000000000


Q ss_pred             HHHHHHhHhhhhcCc--chhHHHH-HHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010361          383 IEAIKLGWKEYMQQP--VLPASLA-YVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRR  458 (512)
Q Consensus       383 ~~~i~eG~~~y~~qp--vl~asla-~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rR  458 (512)
                      .++....++...+++  .+...+. ..+.++.. ......++.|++ +.|+++.++|.+.+..++++++|.++.+++.+|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr  300 (405)
T TIGR00891       222 VMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYS-HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW  300 (405)
T ss_pred             hhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111111111  1111111 11222211 123345677776 479999999999999999999999999999999


Q ss_pred             hChhhHHHHHHHH
Q 010361          459 LGILKAGAAGLIF  471 (512)
Q Consensus       459 lG~~ragl~~l~~  471 (512)
                      +|..+....+...
T Consensus       301 ~g~~~~~~~~~~~  313 (405)
T TIGR00891       301 LGRRKAYVCSLLA  313 (405)
T ss_pred             hCchhhhHHHHHH
Confidence            9988876655543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.43  E-value=2.2e-10  Score=119.09  Aligned_cols=273  Identities=15%  Similarity=0.081  Sum_probs=164.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHH
Q 010361          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (512)
Q Consensus       148 ~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~  227 (512)
                      -.+..+..-.....|..++..++|.+..+...|...++.......+..++..|+.|.++||++||+++....+.-.+   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i---   80 (392)
T PRK10473          4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII---   80 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH---
Confidence            34556777888899999999999999888666888888888888899999999999999999999998876544222   


Q ss_pred             HHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       228 ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                       ...+..+   .    .+  .+.+++.-++.|.......+.....+ .|    ..++   ++..++++....+..++.++
T Consensus        81 -~~~~~~~---~----~~--~~~~~~~~~l~g~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~i~~~~  142 (392)
T PRK10473         81 -ASLLCSL---A----ET--SSLFLAGRFLQGIGAGCCYVVAFAIL-RD----TLDD---RRRAKVLSLLNGITCIIPVL  142 (392)
T ss_pred             -HHHHHHH---h----Cc--HHHHHHHHHHHHhhhhHHHHHHHHHH-HH----HcCH---HHHHHHHHHHHHHHHHHHHH
Confidence             1111111   1    11  12223333444554444343332222 23    3333   37889999999999999999


Q ss_pred             hHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHH
Q 010361          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK  387 (512)
Q Consensus       308 GP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  387 (512)
                      ||.+++.+....+......+..   +..+...++   ....+  ++.   ++++          +++..    +.    .
T Consensus       143 ~~~i~~~l~~~~g~~~~~~~~~---~~~~i~~~~---~~~~~--~~~---~~~~----------~~~~~----~~----~  193 (392)
T PRK10473        143 APVLGHLIMLKFPWQSLFYTMA---AMGILVLLL---SLFIL--KET---RPAR----------APAAS----SK----P  193 (392)
T ss_pred             HHHHHHHHHhCcChHHHHHHHH---HHHHHHHHH---HHHHc--CCC---CCcc----------cCCcc----ch----H
Confidence            9999999877655332222211   111111111   11111  111   1000          00000    00    1


Q ss_pred             HhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHH
Q 010361          388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA  466 (512)
Q Consensus       388 eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl  466 (512)
                      +..+..+++|.++.......+.+.....+....+.|.. +.|+++..+|.+.+..++++++|.++.+++.+|+|..+...
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~  273 (392)
T PRK10473        194 RENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLML  273 (392)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            11223456665444332222222211223233344554 47999999999999999999999999999999999888766


Q ss_pred             HHHH
Q 010361          467 AGLI  470 (512)
Q Consensus       467 ~~l~  470 (512)
                      ++..
T Consensus       274 ~~~~  277 (392)
T PRK10473        274 TSQV  277 (392)
T ss_pred             HHHH
Confidence            5544

>PRK12382 putative transporter; Provisional

Probab=99.42  E-value=2e-10  Score=119.35  Aligned_cols=278  Identities=13%  Similarity=0.039  Sum_probs=165.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      .++.+..++.+.+++.++..+..-.+|+++..-++ |..++++...+..++..+++|+.|.++||++|||++..+.+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACG   92 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHH
Confidence            45678889999999999998888888988877777 99999999999999999999999999999999999998886543


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +.   ......... ... ........+++.-++.|.......++...     |++...+++   +..++++.++.....
T Consensus        93 ~~---~~~~~~~~~-~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-----~~~~~~~~~---~r~~a~~~~~~~~~~  159 (392)
T PRK12382         93 LA---GLAYLLAAI-LPV-SAPFKFALLVVGRLILGFGESQLLTGALT-----WGLGLVGPK---HSGKVMSWNGMAMYG  159 (392)
T ss_pred             HH---HHHHHhhhc-ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCCcc---ccchhhhHHHHHHHH
Confidence            32   111100000 000 00000122333344555555544443322     222344443   688999999888888


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      +.++||.++|.+....+....    ..   ......++......+.  ++   .++ +        +   +.+   +   
T Consensus       160 g~~~g~~~~~~l~~~~g~~~~----~~---~~~~~~~~~~~~~~~~--~~---~~~-~--------~---~~~---~---  209 (392)
T PRK12382        160 ALAAGAPLGLLLHSHFGFAAL----AL---TTMVLPLLAWAFNGTV--RK---VPA-H--------A---GER---P---  209 (392)
T ss_pred             HHHHHHHHHHHHHhccChHHH----HH---HHHHHHHHHHHHHHhc--cC---CCC-C--------c---ccC---c---
Confidence            999999999999887653221    11   1111111111111211  11   000 0        0   000   1   


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                       +.++.++..++..     +...+..+.. .........|..+.|.++  .|......+++++.|.++.+++.+|+|..|
T Consensus       210 -~~~~~~~~~~~~~-----~~~~l~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~  280 (392)
T PRK12382        210 -SLWSVVGLIWKPG-----LGLALQGVGF-AVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK  280 (392)
T ss_pred             -hHHHHHHHHHHhH-----HHHHHHHHHH-hHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence             1122233333211     1111111111 122334456766677664  456667778888999999999999999888


Q ss_pred             HHHHHHHHHHH
Q 010361          464 AGAAGLIFQAS  474 (512)
Q Consensus       464 agl~~l~~Q~~  474 (512)
                      ....+...+.+
T Consensus       281 ~~~~~~~~~~~  291 (392)
T PRK12382        281 VAIVSLLVETV  291 (392)
T ss_pred             ehHHHHHHHHH
Confidence            77666654444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.41  E-value=2.9e-10  Score=116.86  Aligned_cols=269  Identities=15%  Similarity=0.088  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010361          159 GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHT  238 (512)
Q Consensus       159 S~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~  238 (512)
                      ..++..++...+|.+..+..-|...++....+..+...+.+++.|.++||++||+++....++..+.    ..+..+   
T Consensus         3 ~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~----~~~~~~---   75 (377)
T PRK11102          3 MPLAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALA----AVACAL---   75 (377)
T ss_pred             cchHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHH----HHHHHH---
Confidence            3466777888888888765438889999988899999999999999999999999998887654332    111111   


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 010361          239 VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK  318 (512)
Q Consensus       239 ~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~  318 (512)
                      ..    +  .+.+++..++.|.......+.....+ .|    +.++   ++..++++.......++.++||.++|.+...
T Consensus        76 ~~----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  141 (377)
T PRK11102         76 AQ----T--IDQLIYMRFLHGLAAAAASVVINALM-RD----MFPK---EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW  141 (377)
T ss_pred             Hc----c--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11    1  12233334444554444444433322 23    3443   3788999999999999999999999999886


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcc
Q 010361          319 YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPV  398 (512)
Q Consensus       319 ~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpv  398 (512)
                      .+......+...   ..+...+.   ....+  ++.  +++ +        ++++.       ..++..+.++..+++|.
T Consensus       142 ~~~~~~~~~~~~---~~~~~~~~---~~~~~--~~~--~~~-~--------~~~~~-------~~~~~~~~~~~~~~~~~  195 (377)
T PRK11102        142 FSWHAIFWVLAL---AAILAAAL---VFFFI--PET--LPK-E--------RRQPF-------HLRTTIRNFASLFRHKR  195 (377)
T ss_pred             cChHHHHHHHHH---HHHHHHHH---HHHhC--Ccc--Ccc-c--------ccCCC-------ChHHHHHHHHHHHcChH
Confidence            654332222111   11111111   11111  111  000 0        00000       01122345566777776


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 010361          399 LPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS  474 (512)
Q Consensus       399 l~asla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~  474 (512)
                      +...+....+.+.....+......|.. ..|+++...|.+.+..+++++++.++.+++.+|+|..|....+...+.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  272 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI  272 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            554333322322211112222233334 5799999999999999999999999999999999998877666654433

>PRK11043 putative transporter; Provisional

Probab=99.41  E-value=1.2e-09  Score=114.03  Aligned_cols=274  Identities=14%  Similarity=-0.002  Sum_probs=164.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSA--IALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~--~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      ++.+.....++.++.-.+..-.|.+  +....+ |...++....+..++..+.+++.|.++||++||+++..+.++..+ 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-   83 (401)
T PRK11043          5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFAL-   83 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHH-
Confidence            4455556666777777777777766  344455 888999999999999999999999999999999999887654322 


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                         ...+..+   .    .+  .+.+++..++.|.......+..+ ++-.||    .++   ++..++++....+..++.
T Consensus        84 ---~~~~~~~---~----~~--~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~~~~~~~~~~~~  143 (401)
T PRK11043         84 ---GSLGMLW---V----ES--AAQLLVLRFVQAVGVCSAAVIWQ-ALVIDR----YPA---QKANRVFATIMPLVALSP  143 (401)
T ss_pred             ---HHHHHHH---h----cC--HHHHHHHHHHHHhhhHHHHHHHH-HHHHHh----cCc---HHHHHHHHHHHHHHHHHH
Confidence               1111111   1    11  12233333333433223232222 222343    333   257778888888888899


Q ss_pred             HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (512)
                      .+||.++|.+....+..........   ..+...+    ....+ .+    +++++            +.        ++
T Consensus       144 ~~g~~i~~~l~~~~g~~~~~~~~~~---~~~~~~~----~~~~~-~~----~~~~~------------~~--------~~  191 (401)
T PRK11043        144 ALAPLLGAWLLNHFGWQAIFATLFA---ITLLLIL----PTLRL-KP----SKKAR------------KQ--------SQ  191 (401)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHH---HHHHHHH----HHHHc-CC----CCCcc------------cc--------ch
Confidence            9999999999887664432222111   1111111    11111 11    00000            00        01


Q ss_pred             HHHhHhhhhcCcchhHHHHH-HHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhH
Q 010361          386 IKLGWKEYMQQPVLPASLAY-VLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (512)
Q Consensus       386 i~eG~~~y~~qpvl~asla~-alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ra  464 (512)
                      .+++++..+++|.++..+.. ....... ..+....+.|+++.|+++..+|+.....+++.++|.++.+++.+|+|..+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~  270 (401)
T PRK11043        192 DALTFKQLLKSKTYLGNVLIFAACSAAF-FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL  270 (401)
T ss_pred             HHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            13456677778765543222 2211111 223344566666789999999999988899999999999999999998887


Q ss_pred             HHHHHHHHHHHH
Q 010361          465 GAAGLIFQASLL  476 (512)
Q Consensus       465 gl~~l~~Q~~~L  476 (512)
                      ..+......++.
T Consensus       271 ~~~~~~~~~~~~  282 (401)
T PRK11043        271 LPWLLVLFAVSV  282 (401)
T ss_pred             HHHHHHHHHHHH
Confidence            655555444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.40  E-value=6.9e-11  Score=119.50  Aligned_cols=279  Identities=13%  Similarity=-0.018  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHH
Q 010361          154 ACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI  233 (512)
Q Consensus       154 ~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li  233 (512)
                      .+.++.......+.++.|.+.....-|....+.......+..++..++.|.++||++||+++..+.++..+.    ..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~----~~~~   77 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV----NLFF   77 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHH----HHHH
Confidence            345566667777888888765443338889999999999999999999999999999999998887654332    1111


Q ss_pred             HHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhH-HHH
Q 010361          234 IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA-SLF  312 (512)
Q Consensus       234 ~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP-~lg  312 (512)
                      .+.   .    +  .+.+++..++.|.......+.....+ .+    ..++   ++..++++.......++.++|| .++
T Consensus        78 ~~~---~----~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~  140 (379)
T TIGR00881        78 GFS---T----S--LWVMAALWALNGIFQGMGWPPCGRTV-TK----WFSR---SERGTWVSFWNCSHNVGGGLLPPLVL  140 (379)
T ss_pred             HHh---h----h--HHHHHHHHHHHHhhccccCCchHHHH-HH----hcCH---hhheeeEeehhccchhHHHHHHHHHH
Confidence            111   1    1  12333344444554444444433322 23    3333   2678889999999999999999 466


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhh
Q 010361          313 GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKE  392 (512)
Q Consensus       313 GlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~  392 (512)
                      +.+....+......+...   ..+...++   ..... ++..+.++.++ ..++.+++.+.+ .+..++..+.....+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  211 (379)
T TIGR00881       141 FGIAELYSWHWVFIVPGI---IAIIVSLI---CFLLL-RDSPQSCGLPP-AEEMPNEEPDGD-AEKKEEELTKKQIFLQY  211 (379)
T ss_pred             HHHHhcCCchhHHHHHHH---HHHHHHHH---Hheee-CCCccccccCc-cccCcccccccc-cccccccccchHHHHHH
Confidence            666554443322221111   11111111   11111 11111000000 000000000000 00001111223456677


Q ss_pred             hhcCcchhHHHHHH-HHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          393 YMQQPVLPASLAYV-LLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       393 y~~qpvl~asla~a-lL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      .+++|.++...... +.++.. ..+...+..|+.+ .|+++.+.|.+.+..++++++|.++.+++.+|.+..|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  283 (379)
T TIGR00881       212 VLLNKVLWYISLGYVFVYVVR-TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR  283 (379)
T ss_pred             HHhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence            88888766543333 333322 3455567778765 6999999999999999999999999999999865443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.40  E-value=6.8e-10  Score=115.66  Aligned_cols=248  Identities=14%  Similarity=0.032  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010361          162 VEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIP  241 (512)
Q Consensus       162 Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~  241 (512)
                      ++.+....+|.+..+..-|...++.......+...+++++.|.++||++|||++..+.++-.+    ++.+..+   .  
T Consensus        24 ~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~----~~~~~~~---~--   94 (390)
T PRK03545         24 TEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA----SHVLSAL---A--   94 (390)
T ss_pred             HHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----HHHHHHH---h--
Confidence            333333335665554433889999988888889999999999999999999999998654322    1111111   1  


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch
Q 010361          242 TSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEP  321 (512)
Q Consensus       242 ~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~  321 (512)
                        .+  .+.+++.-++.|.......+..+..+. |    ..++   ++..++++.......++..+||++++.+.+..+.
T Consensus        95 --~~--~~~l~~~r~~~G~~~~~~~~~~~~~i~-~----~~~~---~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw  162 (390)
T PRK03545         95 --WN--FTVLLISRIGIAFAHAIFWSITASLAI-R----VAPA---GKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW  162 (390)
T ss_pred             --cc--HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hCCh---hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence              11  223344444455554444333332222 3    3443   3689999999999999999999999999887775


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhH
Q 010361          322 VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPA  401 (512)
Q Consensus       322 ~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~a  401 (512)
                      .....+...   ..+....   .....+  |+.   +++           +++       .    .++++.++++|.++.
T Consensus       163 ~~~f~~~~~---~~~l~~~---~~~~~~--~~~---~~~-----------~~~-------~----~~~~~~~~~~~~~~~  209 (390)
T PRK03545        163 RTTFLAIGG---GALITLL---LLIKLL--PLL---PSE-----------HSG-------S----LKSLPLLFRRPALVS  209 (390)
T ss_pred             HHHHHHHHH---HHHHHHH---HHHHhC--CCC---CCC-----------Ccc-------h----HHHHHHHHhCcHHHH
Confidence            543333222   1111111   111111  110   000           000       0    123456778887655


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          402 SLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       402 sla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      ......+.........+.++.|+.+ .|+++...|.+.+..++++++|+++.+++.+|.|..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            4333322221111222345667665 6999999999999999999999999999999998543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.39  E-value=8e-10  Score=116.24  Aligned_cols=231  Identities=10%  Similarity=0.013  Sum_probs=143.6

Q ss_pred             HHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHH
Q 010361          176 LLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFV  254 (512)
Q Consensus       176 ~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v  254 (512)
                      ..++ |..+++....+..+...+.+|+.|.++||++||++++.+.++..+.    ..+  .... .    +  .+.+++.
T Consensus        48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~----~~~--~~~~-~----~--~~~l~~~  114 (394)
T PRK10213         48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS----CLL--VSFA-N----S--FSLLLIG  114 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH----HHH--HHHH-C----h--HHHHHHH
Confidence            4456 8888888888888999999999999999999999999998775432    111  1111 1    1  2334554


Q ss_pred             HHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHH
Q 010361          255 LVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMW  334 (512)
Q Consensus       255 ~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~  334 (512)
                      -++.|.......+.....+ .||    +++   ++..++++.....-.++.++||.+++.+...++......+...   .
T Consensus       115 r~l~G~~~g~~~~~~~~~i-~~~----~~~---~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~---l  183 (394)
T PRK10213        115 RACLGLALGGFWAMSASLT-MRL----VPP---RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV---M  183 (394)
T ss_pred             HHHHHHhhHHHHHHHHHHH-HHH----cCH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH---H
Confidence            4556666555555444333 344    343   3799999999999999999999999999987775443332221   1


Q ss_pred             HHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhh
Q 010361          335 SLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVL  414 (512)
Q Consensus       335 s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll  414 (512)
                      .+   +...+....+  |+.  +++            + +..          .+.++..+++|.++..+...++.+....
T Consensus       184 ~~---~~~l~~~~~~--p~~--~~~------------~-~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~  233 (394)
T PRK10213        184 GV---LCIFWIIKSL--PSL--PGE------------P-SHQ----------KQNTFRLLQRPGVMAGMIAIFMSFAGQF  233 (394)
T ss_pred             HH---HHHHHHHHHC--CCC--Ccc------------c-ccc----------hhHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            11   1111121211  211  000            0 000          1122345677766554333222222111


Q ss_pred             hhhHH-HHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          415 TPGSL-MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       415 ~~~~l-~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                      .+... .+.|.++.|+++..+|.+....++++++|.++.+++.+|.+
T Consensus       234 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        234 AFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22222 34565668999999999999999999999999999999954

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=3e-10  Score=116.03  Aligned_cols=268  Identities=12%  Similarity=0.018  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHH-HHHHHHHHHHHHH
Q 010361          153 YACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYIC-LNTVQAAAQLLSA  230 (512)
Q Consensus       153 ~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~-~dlvq~~~v~ls~  230 (512)
                      ....++..++..++...+|+++....+ |...++....+..+..++.+|+.|.++||++|||.++. +.+...    +.+
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~----~~~   78 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA----LAC   78 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH----HHH
Confidence            456788899999999999999887777 99999999888889999999999999999998887554 433211    111


Q ss_pred             HHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHH
Q 010361          231 AMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGAS  310 (512)
Q Consensus       231 ~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~  310 (512)
                      .+  ..  ..   .+  .+.+++..++.+.......+..+. +-++|    .+++ .......++.++....++.++||.
T Consensus        79 ~~--~~--~~---~~--~~~l~~~~~~~g~~~~~~~p~~~~-~~~~~----~~~~-~~~~~~~~~~~~~~~~~g~~ig~~  143 (375)
T TIGR00899        79 LL--FA--WN---RN--YFLLLVLGVLLSSFASTANPQLFA-LAREH----ADRT-GREAVMFSSVMRAQISLAWVIGPP  143 (375)
T ss_pred             HH--HH--hc---ch--HHHHHHHHHHHHhhhhhhHHHHHH-HHHHH----hhhc-chhhHHHHHHHHHHHhHHHHHhhh
Confidence            11  11  11   11  122233333344443333333322 22333    2221 111222377777778889999999


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhH
Q 010361          311 LFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGW  390 (512)
Q Consensus       311 lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~  390 (512)
                      ++|.+....+......+...   ..+....    ..... .|+.+  ++.+          +.+.+       .+    +
T Consensus       144 ~~~~l~~~~~~~~~f~~~~~---~~~~~~~----~~~~~-~~~~~--~~~~----------~~~~~-------~~----~  192 (375)
T TIGR00899       144 LAFWLALGFGFTVMFLTAAL---AFVLCGV----LVWLF-LPSYP--RGAP----------GALTR-------LE----V  192 (375)
T ss_pred             HHHHHHHhcccHHHHHHHHH---HHHHHHH----HHHHh-CCCcc--cCcc----------cccCc-------ch----h
Confidence            99999887665433222221   1111111    11111 12111  1000          00000       01    1


Q ss_pred             hhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 010361          391 KEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (512)
Q Consensus       391 ~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l  469 (512)
                      +..+++|.++..+...++.+.....+...+..|+. +.|.++.+.|.+.+...+.++.+.++.+++.+|+|..+...++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       193 RGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             hhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence            22345665554433332222211123334556665 57999999999999888888899999999999999888765544


Q ss_pred             H
Q 010361          470 I  470 (512)
Q Consensus       470 ~  470 (512)
                      .
T Consensus       273 ~  273 (375)
T TIGR00899       273 L  273 (375)
T ss_pred             H
Confidence            3

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.39  E-value=1.7e-10  Score=120.08  Aligned_cols=272  Identities=14%  Similarity=0.070  Sum_probs=163.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~l  228 (512)
                      |...|.+.+   .+-.+..--+|+++.+...|...++....+..++.++.+|+.|.++||++|++...  ..+.... .+
T Consensus         9 ~~~~~~~~~---~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~--~~~~~~~-~~   82 (382)
T PRK11128          9 LALSYFGYF---FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPAL--RLLALLT-LL   82 (382)
T ss_pred             HHHHHHHHH---HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHH--HHHHHHH-HH
Confidence            344444444   44567777778888776559999999999999999999999999999999953211  1111010 00


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilG  308 (512)
                       +.+ .+. ...   ++  .+.+++...+.+.......++.+..++ +|     .+    +..+++++.+....++..+|
T Consensus        83 -~~~-~~~-~~~---~~--~~~l~i~~~l~g~~~~~~~~~~~a~~~-~~-----~~----~~~~a~~~~~~~~~lg~~ig  144 (382)
T PRK11128         83 -FAV-AFW-FGA---HS--FWLLFVAIGLFNLFFSPLVPLTDALAN-TW-----QK----QIGLDYGKVRLWGSIAFVIG  144 (382)
T ss_pred             -HHH-HHH-Hhc---cc--HHHHHHHHHHHHHHHcccccHHHHHHH-HH-----Hh----hccCCcchHHHHHHHHHHHH
Confidence             011 111 111   11  233344334445544444444333332 44     11    45677888888888999999


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHH
Q 010361          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (512)
Q Consensus       309 P~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (512)
                      |+++|.+...++......+..    ......++   +...  .++.+ +++ +       ++  ++        .++..+
T Consensus       145 p~lgg~l~~~~g~~~~f~~~~----~~~~~~~~---~~~~--~~~~~-~~~-~-------~~--~~--------~~~~~~  196 (382)
T PRK11128        145 SALTGKLVSWFGEQAILWILT----AGVASMLL---GQLL--RPTIM-PQG-E-------SR--QQ--------ESAGWP  196 (382)
T ss_pred             HHHHHHHHHHcChhHHHHHHH----HHHHHHHH---HHHc--cCCCC-Ccc-c-------cc--cc--------cccccc
Confidence            999999999877654332221    11111111   1111  11110 000 0       00  00        001234


Q ss_pred             hHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH
Q 010361          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (512)
Q Consensus       389 G~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~  468 (512)
                      +++..+|+|.++..+...++.......+.+.++.|+.+.|+++..+|.+.+.+.++.+.+.++.+++.+|+|..+....+
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~  276 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS  276 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            67788899987765444333322213345567788888999999999999999999999999999999999998876655


Q ss_pred             HHHH
Q 010361          469 LIFQ  472 (512)
Q Consensus       469 l~~Q  472 (512)
                      ....
T Consensus       277 ~~~~  280 (382)
T PRK11128        277 AICG  280 (382)
T ss_pred             HHHH
Confidence            5433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.38  E-value=3.6e-10  Score=117.74  Aligned_cols=272  Identities=13%  Similarity=0.012  Sum_probs=169.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      +.+..+..+.++-..++.+..-.+|.+..+..-|.-..+....+..+..++..|+.|.+.||++||+++..+.++..+. 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~-   81 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG-   81 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH-
Confidence            4567788888888888888888888887665448788888888899999999999999999999999999887654332 


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                        . .+  ... .    .+  .+.+++.-++.|.......+.....++ +    +.++   ++..++++.......++..
T Consensus        82 --~-~l--~~~-~----~~--~~~l~~~r~l~G~~~~~~~~~~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~g~~  141 (382)
T PRK10091         82 --N-AM--FTL-S----SS--YLMLAIGRLVSGFPHGAFFGVGAIVLS-K----IIKP---GKVTAAVAGMVSGMTVANL  141 (382)
T ss_pred             --H-HH--HHH-h----Cc--HHHHHHHHHHHHhhhHHHHHHHHHHHH-H----hCCh---HHhhHHHHHHHHHHHHHHH
Confidence              1 11  111 1    11  233444445556555544444433333 3    3443   2677888988888889999


Q ss_pred             HhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHH
Q 010361          307 AGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAI  386 (512)
Q Consensus       307 lGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  386 (512)
                      +||.++|.+....+......+....   .....+   .....+  |+.+  ++ +          +.+           .
T Consensus       142 ~g~~l~~~l~~~~gwr~~f~~~~~~---~~~~~~---~~~~~l--p~~~--~~-~----------~~~-----------~  189 (382)
T PRK10091        142 LGIPLGTYLSQEFSWRYTFLLIAVF---NIAVLA---SIYFWV--PDIR--DE-A----------KGG-----------L  189 (382)
T ss_pred             HhccHHHHHhhhccHHHHHHHHHHH---HHHHHH---HHHHhC--CCCC--cc-c----------ccC-----------H
Confidence            9999999998866644332222211   111111   111111  2110  00 0          000           1


Q ss_pred             HHhHhhhhcCcchhHHHHHH-HHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhH
Q 010361          387 KLGWKEYMQQPVLPASLAYV-LLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (512)
Q Consensus       387 ~eG~~~y~~qpvl~asla~a-lL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ra  464 (512)
                      ++.++.. ++|.....+... +.+... ....+....|..+ .|+++...|.+.+..++++++|.++.+++.+|+|..+.
T Consensus       190 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~  267 (382)
T PRK10091        190 REQFHFL-RSPAPWLIFAATMFGNAGV-FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI  267 (382)
T ss_pred             HHHHHHh-cChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH
Confidence            2233433 444333222222 222211 1122334456654 79999999999999999999999999999999998887


Q ss_pred             HHHHHHHHH
Q 010361          465 GAAGLIFQA  473 (512)
Q Consensus       465 gl~~l~~Q~  473 (512)
                      ..++...+.
T Consensus       268 ~~~~~~~~~  276 (382)
T PRK10091        268 AAVTDFIIV  276 (382)
T ss_pred             HHHHHHHHH
Confidence            666554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.36  E-value=3.5e-10  Score=114.20  Aligned_cols=273  Identities=17%  Similarity=0.048  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010361          161 LVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVI  240 (512)
Q Consensus       161 ~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~  240 (512)
                      +...+..++.|.+.....-|...++....+..+..++.+++.|.++||++||+++..+.++..+.    ..+..+.   .
T Consensus         8 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~----~~~~~~~---~   80 (399)
T TIGR00893         8 LDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF----TGLQAFA---G   80 (399)
T ss_pred             HHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHH----HHHHHHH---c
Confidence            33466677788755444338888999999999999999999999999999999988877654321    1111111   1


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 010361          241 PTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       241 ~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s  320 (512)
                          +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++..+....++.++||.++|.+....+
T Consensus        81 ----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  146 (399)
T TIGR00893        81 ----A--YVSLYILRVLLGAAEAPFFPGIILIV-AS----WFPA---SERATAVSIFNSAQGLGGIIGGPLVGWILIHFS  146 (399)
T ss_pred             ----C--HHHHHHHHHHHHHHHHhhhhHHHHHH-HH----hCCH---HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence                1  22334444455555555444443322 23    3443   378999999999999999999999999887766


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCC-CCCCCCCCcchhHHhHHHHHHhHhhhhcCcch
Q 010361          321 PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTS-NEGPVPDADNIVDVGIEAIKLGWKEYMQQPVL  399 (512)
Q Consensus       321 ~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl  399 (512)
                      ......+...   ..+...++   ..... ++..++++...++.++. .++...+.++  +...++..+.++..+++|.+
T Consensus       147 ~~~~~~~~~~---~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  217 (399)
T TIGR00893       147 WQWAFIIEGV---LGIIWGVL---WLKFI-PDPPQKAKWLTEEEKYIVVGGLLAEQQG--KGPSTPKKYQIKELLKDRRV  217 (399)
T ss_pred             chHHHHHHHH---HHHHHHHH---hhhee-cCCCCccccCCHHHHhhcchhhcccccc--ccccCCCccchHHHhcCHHH
Confidence            4332222111   11111111   11111 11011000000000000 0000000000  00000112345556677765


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          400 PASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       400 ~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      +..+...+++......+...++.|+++ .|.++...|.+.+..++++++|.++.+++.+|+|..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            554433333322213344566777765 7999999999999999999999999999999998775

>PRK10054 putative transporter; Provisional

Probab=99.33  E-value=7.9e-10  Score=116.35  Aligned_cols=272  Identities=12%  Similarity=-0.016  Sum_probs=167.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      .+++++.|.++.++..+|..+...-+|.++....+ |...++....+..+..+++.|++|.+.||++||++++...+...
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~   84 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFA   84 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Confidence            45679999999999999999999999999988888 99999999998899999999999999999999999888776543


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +    ++.+..+.   +    +  .+.+++...+.++....+....+     .|+....++   ++..++++.......+
T Consensus        85 ~----~~~~~~~~---~----~--~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~g~~~~~~~l  143 (395)
T PRK10054         85 S----GFIAIPLV---N----N--VTLVVLFFALINCAYSVFSTVLK-----AWFADNLSS---TSKTKIFSLNYTMLNI  143 (395)
T ss_pred             H----HHHHHHHH---h----H--HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCH---hHHHHHHHHHHHHHHH
Confidence            2    11111111   1    1  11222222233433333322222     344445554   3788999999999999


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      ...+||.++|.+.. .+......+.....+.   ..++..+.+.+        .+++++         +++     ++.+
T Consensus       144 g~~igp~l~~~l~~-~g~~~~f~~~~~~~~i---~~i~~~~~~~~--------~~~~~~---------~~~-----~~~~  197 (395)
T PRK10054        144 GWTVGPPLGTLLVM-QSINLPFWLAAICSAF---PLVFIQIWVQR--------SEKAIA---------TET-----GSVW  197 (395)
T ss_pred             HHHHHHHHHHHHHH-hccCcHHHHHHHHHHH---HHHHHHHHHhc--------cccccc---------cch-----hhhh
Confidence            99999999999886 4443322222111111   11111111111        110000         000     0001


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHH-HHHhhhhhhHHHHHHHH---HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLL-CLNVVLTPGSLMTAFLT---QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL-~~tvll~~~~l~v~yl~---~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                           ..+..+++|.++......++ .+.. ..+.+....|+.   +.+.++..+|.+.+..++..+...+..+++.+|.
T Consensus       198 -----~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  271 (395)
T PRK10054        198 -----SPSVLLQDKALLWFTCSGFLASFVS-GAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA  271 (395)
T ss_pred             -----hhhhhccCceehHHHHHHHHHHHHH-HHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC
Confidence                 12456777766554333222 2211 112223344443   4577888999999999888888888888888888


Q ss_pred             ChhhHHHHHH
Q 010361          460 GILKAGAAGL  469 (512)
Q Consensus       460 G~~ragl~~l  469 (512)
                      +..+...++.
T Consensus       272 ~~~~~l~~~~  281 (395)
T PRK10054        272 NIRPLMTAGT  281 (395)
T ss_pred             CchhHHHHHH
Confidence            8776554444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.33  E-value=1.3e-09  Score=111.19  Aligned_cols=287  Identities=10%  Similarity=-0.040  Sum_probs=166.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      |.++..|.+.+++..+..++....|.++....+ |...++.......+..++.+++.|.+.||++||+++..+.++..+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIP   80 (366)
T ss_pred             CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            457788899998888888888888876767777 9999999999999999999999999999999999988876554322


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                          ..+..+.   .   .+  .+.+++.-++.|.......... ..+ .||    .++   ++..++++.......++.
T Consensus        81 ----~~~~~~~---~---~~--~~~~~~~~~~~g~~~~~~~~~~-~~~-~~~----~~~---~~r~~~~~~~~~~~~~g~  139 (366)
T TIGR00886        81 ----CLWAGLA---V---QS--YSVLLLLRLFIGIAGGSFASCM-PWI-SFF----FPK---KIQGTALGLAAGWGNMGG  139 (366)
T ss_pred             ----HHHHHHH---h---hh--HHHHHHHHHHHHHhchhhHhHH-HHH-HHh----cCH---hhhhHHHHHHHHHhHHHH
Confidence                1111111   1   01  1222333333444333333222 222 243    333   367888888887778888


Q ss_pred             HHhHHHHHHHHhhc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCC
Q 010361          306 IAGASLFGILLSKY----------EPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDA  375 (512)
Q Consensus       306 ilGP~lgGlL~s~~----------s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~  375 (512)
                      .+||.+++.+...+          +......+  ..........++. +. . + ++.++++++ +++.+.     +.+.
T Consensus       140 ~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~-~~-~-~-~~~~~~~~~-~~~~~~-----~~~~  207 (366)
T TIGR00886       140 GVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI--VPAGILLLPALLI-FF-V-G-ADTPPGKPA-TGKLSF-----KGAR  207 (366)
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccchhHH--HHHHHHHHHHHHH-HH-h-c-ccCCccccc-chhccc-----cccc
Confidence            88888887776532          11111101  0011111111110 11 1 1 111110000 000000     0000


Q ss_pred             cchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 010361          376 DNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAY  454 (512)
Q Consensus       376 ~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~  454 (512)
                      ....+   +. .+.++..+++|.++.......+++.....+...++.|+++ .|+++.+.|.+.+...+++++|.++.++
T Consensus       208 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  283 (366)
T TIGR00886       208 WSVGT---GA-LGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGA  283 (366)
T ss_pred             ccccc---hh-HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccch
Confidence            00000   11 1133445566655544333333332223345566778875 6999999999999999999999999999


Q ss_pred             HHHhhChhhHHHHHHH
Q 010361          455 LVRRLGILKAGAAGLI  470 (512)
Q Consensus       455 L~rRlG~~ragl~~l~  470 (512)
                      +.+|+|..|....+..
T Consensus       284 l~~r~g~~~~~~~~~~  299 (366)
T TIGR00886       284 ISDRLGGARKLLMSFL  299 (366)
T ss_pred             HHHhhccchhHHHHHH
Confidence            9999999877666554

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.32  E-value=9e-10  Score=116.02  Aligned_cols=288  Identities=11%  Similarity=0.056  Sum_probs=158.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++++++.++...++-.++-.+..--+|.++..-.+ |...+++...+..+...+.+|+.|.+.||++|||++..+..+-.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~   87 (420)
T PRK09528          8 KNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLL   87 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            67789999999999999888888888888888777 99999999999999999999999999999999999877654322


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +.   ......+.. .     .......+...++.+.....+.......++ +|....     +++....-+..+....+
T Consensus        88 ~~---~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~g~~~g~~~~~~~~  152 (420)
T PRK09528         88 VL---FGPFFIYVF-A-----PLLQYNILLGAIVGGIYLGFGFLAGAGAIE-AYIERV-----SRRSGFEYGRARMWGSL  152 (420)
T ss_pred             HH---HHHHHHHHH-H-----HHHHHHHHHHHHHHHHHhhhhhccchhhhh-hHHHHH-----HhhccccchhhHHhhhH
Confidence            11   111101100 0     000000011111111111111111112222 332111     01222234566777788


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      +..+||.++|.+... +......+..+   ..+....    ....+.++ .+++++    .+  +++.+.+    .+.  
T Consensus       153 g~~i~~~~~g~l~~~-~~~~~f~~~~~---~~~~~~~----~~~~~~~~-~~~~~~----~~--~~~~~~~----~~~--  211 (420)
T PRK09528        153 GWALCAFIAGILFNI-NPQINFWLGSG---SALILLV----LLFFAKPD-APSTAK----VA--NALGANA----SAV--  211 (420)
T ss_pred             HHHHHHHHHHHHHhc-CchHhHHHHHH---HHHHHHH----HHhccccc-ccchhh----hc--cchhccc----ccc--
Confidence            999999999999763 33221111111   1111111    11111111 110000    00  0000000    001  


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH----hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ----RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~----lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                       + .+.++..+|||.++..+...+........+...++.|+.+    .+.+...+|.+.++..++..+|.++.+++.+|+
T Consensus       212 -~-~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  289 (420)
T PRK09528        212 -S-LKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI  289 (420)
T ss_pred             -c-HHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1 1233456677765543322222111111233345566543    367778999999999999999999999999999


Q ss_pred             ChhhHHHHHHH
Q 010361          460 GILKAGAAGLI  470 (512)
Q Consensus       460 G~~ragl~~l~  470 (512)
                      |..+...++..
T Consensus       290 g~~~~~~~~~~  300 (420)
T PRK09528        290 GAKNALLLAGT  300 (420)
T ss_pred             CcchhhHHHHH
Confidence            98887554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.32  E-value=2.2e-09  Score=116.42  Aligned_cols=294  Identities=14%  Similarity=0.018  Sum_probs=174.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~l  228 (512)
                      +..+..+.++..+...+...|+|-+..++..+.-.++....+..+...++.++.|.+.||++||++++.+.++..+.   
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~---   84 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA---   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---
Confidence            45578899999999999999999998877667778888888888888999999999999999999999988654332   


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilG  308 (512)
                      + .+  ... .    .+  .+.+++.-++.|+......+.....+.++    ..++   ++..++++.+.....++..+|
T Consensus        85 ~-~~--~~~-a----~~--~~~li~~r~l~G~g~~~~~~~~~~~l~~~----~~~~---~~r~~~~g~~~~~~~~g~~~g  147 (495)
T PRK14995         85 S-LA--AAF-S----PT--ASWLIATRALLAIGAAMIVPATLAGIRAT----FTEE---KQRNMALGVWAAVGSGGAAFG  147 (495)
T ss_pred             H-HH--HHH-c----CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence            1 11  111 1    11  12233333445555555444444334332    1222   478999999999999999999


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCC---------------CCCCCC
Q 010361          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTS---------------NEGPVP  373 (512)
Q Consensus       309 P~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~---------------~~~~~~  373 (512)
                      |.++|.+...++......++..+.+.   ...    +..+. .|+.+.+++ ++.+..+               .+..+.
T Consensus       148 p~lgg~l~~~~gwr~~f~i~~~~~~~---~~~----l~~~~-l~~~~~~~~-~~~d~~g~~~~~~~~~~l~~~~~~~~~~  218 (495)
T PRK14995        148 PLVGGILLEHFYWGSVFLINVPIVLV---VMG----LTARY-VPRQAGRRD-QPLNLGHALMLIVAILLLVYSAKTALKG  218 (495)
T ss_pred             HHHHHHhhccCChHHHHHHHHHHHHH---HHH----HHHHh-CCCCCCCCC-CCCChHhHHHHHHHHHHHHHHHHhcccc
Confidence            99999999877654433322211111   111    11111 121110000 0000000               000000


Q ss_pred             CCcch--hHH-----------hHHHHHH-----hHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchh
Q 010361          374 DADNI--VDV-----------GIEAIKL-----GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSII  434 (512)
Q Consensus       374 ~~~~~--~~~-----------~~~~i~e-----G~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~i  434 (512)
                      .....  ...           .+.|.+.     .+ ..+++|.+.......+..+....++...++.|++. +|+++.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~a  297 (495)
T PRK14995        219 FLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDM-RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEA  297 (495)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCH-HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            00000  000           0001000     01 23556665554444333322212333455667775 79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 010361          435 GGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQ  472 (512)
Q Consensus       435 G~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q  472 (512)
                      |+.....+++..+++.+.+++.+|+|..+....+....
T Consensus       298 g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~  335 (495)
T PRK14995        298 GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALS  335 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            99999999999999999999999999877665555433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.31  E-value=1.8e-09  Score=114.76  Aligned_cols=279  Identities=12%  Similarity=0.013  Sum_probs=157.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHH
Q 010361          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (512)
Q Consensus       148 ~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~  227 (512)
                      -+..+.++.++..+........+|.+..+..-|...++.......+...+.+++.|.+.||++||+++..+.++-.+   
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~---  100 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI---  100 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH---
Confidence            34445566666655555667788887766433889999999999999999999999999999999998777654222   


Q ss_pred             HHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       228 ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                         ..+...+.     .+  .+.+++..++.+.......+.....+ .+|.    ++   ++..++.+.......++.++
T Consensus       101 ---~~~~~~~~-----~~--~~~l~~~~~l~g~~~g~~~~~~~~~~-~~~~----~~---~~rg~~~~~~~~~~~~g~~~  162 (434)
T PRK11663        101 ---INILFGFS-----SS--LWAFALLWVLNAFFQGWGWPVCAKLL-TAWY----SR---TERGGWWAIWNTAHNVGGAL  162 (434)
T ss_pred             ---HHHHHHHH-----hH--HHHHHHHHHHHHHHHHccchHHHHHH-HHhC----CH---HHHHHHHHHHHHHHHHHHHH
Confidence               11111111     11  12223333344544444333333333 2443    33   36888999999999999999


Q ss_pred             hHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-ccccccCCCCCCCCCCCCcchhHHhHHHH
Q 010361          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRA-KCSQSCCRTSNEGPVPDADNIVDVGIEAI  386 (512)
Q Consensus       308 GP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  386 (512)
                      ||.++|.+...++......+...   ..+...++   ....++++ ++.. .++....++..++...+.+    +...+.
T Consensus       163 ~~~~~~~l~~~~gw~~~f~~~~i---~~~~~~~~---~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  231 (434)
T PRK11663        163 IPLVVGAIALHYGWRYGMMIAGI---IAIVVGLF---LCWRLRDK-PQAMGLPSVGEWRHDALELAQQQE----GAGLSR  231 (434)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHH---HHHHHHHH---HHHHcCCC-HhhcCCCCcccccccccccchhcc----ccCCCh
Confidence            99999999887664433222111   11111111   11111111 1000 0000000000000000000    000012


Q ss_pred             HHhHh-hhhcCcchhHHHHHH-HHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          387 KLGWK-EYMQQPVLPASLAYV-LLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       387 ~eG~~-~y~~qpvl~asla~a-lL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                      ++-++ +.+++|.+....... +.++.. ..+...++.|++ +.|+++.+.|...+...+++++|.++.+++.+|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        232 KEILTKYVLLNPYIWLLSFSYVLVYVVR-AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             hhhHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            22232 356777655433222 222221 234455677885 4799999999999999999999999999999998

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.30  E-value=3.2e-09  Score=110.60  Aligned_cols=277  Identities=13%  Similarity=-0.023  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~l  228 (512)
                      ....+...++..+.......+.|.+..+..-|..+++....+..+..++.+++.|.+.||++||+++....++..+.   
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---   93 (406)
T PRK11551         17 IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLF---   93 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH---
Confidence            44566777777777788888888887664449999999999999999999999999999999999998876543221   


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilG  308 (512)
                       ..+  ..+.     .+  .+.+++..++.|.......+.....+ .||    .++   ++..++++.......+..+++
T Consensus        94 -~~~--~~~~-----~~--~~~~~~~~~l~G~~~~~~~~~~~~~~-~~~----~~~---~~r~~~~~~~~~~~~~g~~~~  155 (406)
T PRK11551         94 -SLA--TAQA-----WD--FPSLLVARLLTGVGLGGALPNLIALT-SEA----VGP---RLRGTAVSLMYCGVPFGGALA  155 (406)
T ss_pred             -HHH--HHHh-----cc--HHHHHHHHHHHHhhHHHHHHHHHHHH-HHH----cCH---HHHHHHHHHHHHHHHHHHHHH
Confidence             111  1111     11  12333444445554444443333222 233    333   378899999999999999999


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHH
Q 010361          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (512)
Q Consensus       309 P~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (512)
                      |.+++.+....+......+...   ..+....+   ....+  ++.++.++++         ...+.   .+...+.+  
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~l--~~~~~~~~~~---------~~~~~---~~~~~~~~--  213 (406)
T PRK11551        156 SVIGVLAAGDAAWRHIFYVGGV---GPLLLVPL---LMRWL--PESRAFAQAA---------GAGKQ---RAPVLRAL--  213 (406)
T ss_pred             HHHHHHHccccCHHHHHHHHHH---HHHHHHHH---HHHhC--CCChhHHhcc---------Ccchh---hhhhHHHH--
Confidence            9999888765554332222111   11111111   11111  1111100000         00000   01111111  


Q ss_pred             hHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH
Q 010361          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (512)
Q Consensus       389 G~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~  468 (512)
                       ++.. +.+..+......+..+.....+...++.|+++.|+++...|.+.+...+++++|.++.+++.+|+|..+.....
T Consensus       214 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  291 (406)
T PRK11551        214 -FGEG-RATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLI  291 (406)
T ss_pred             -hhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence             1111 11111111111111111111223345667778899999999999999999999999999999999988876654


Q ss_pred             HH
Q 010361          469 LI  470 (512)
Q Consensus       469 l~  470 (512)
                      ..
T Consensus       292 ~~  293 (406)
T PRK11551        292 YA  293 (406)
T ss_pred             HH
Confidence            43

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.28  E-value=2.2e-09  Score=106.93  Aligned_cols=250  Identities=18%  Similarity=0.058  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHH
Q 010361          150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (512)
Q Consensus       150 ~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls  229 (512)
                      ..+..+.+...++..+.....|.+..+..-+....+.......+..++..|+.|.+.||++||+.+..+.+...+.    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~----   77 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG----   77 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHH----
Confidence            4577889999999999999999998776558889999999999999999999999999999999988888765432    


Q ss_pred             HHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhH
Q 010361          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (512)
Q Consensus       230 ~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP  309 (512)
                      ..+...  . .    +  .+..++..++.|.......+.....     ++.+.+++   +..+.++..+....++.++||
T Consensus        78 ~~~~~~--~-~----~--~~~~~~~~~l~g~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~  140 (352)
T cd06174          78 SLLLAF--A-S----S--LWLLLVGRFLLGLGGGALYPAAAAL-----IAEWFPPK---ERGRALGLFSAGFGLGALLGP  140 (352)
T ss_pred             HHHHHH--h-c----c--HHHHHHHHHHHHcccccccHhHHHH-----HHHhCCcc---chhhhhhHHHHHHHHHHHHHH
Confidence            111111  1 1    1  1223344444555444444444332     22345543   789999999999999999999


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHh
Q 010361          310 SLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG  389 (512)
Q Consensus       310 ~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG  389 (512)
                      .+++.+....+......+...   ..+...+    .....                              .         
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~------------------------------~---------  174 (352)
T cd06174         141 LLGGLLAESLGWRWLFLILAI---LGLLLAL----LLLFL------------------------------L---------  174 (352)
T ss_pred             HHHHHHHHHhhHHHHHHHHHH---HHHHHHH----HHHHH------------------------------H---------
Confidence            999999886653322222111   1111111    10000                              0         


Q ss_pred             HhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHh-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh-HHHH
Q 010361          390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQR-GLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK-AGAA  467 (512)
Q Consensus       390 ~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~l-Gls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r-agl~  467 (512)
                             |.++.......++......+...++.|.++. |.++.+.|.+.+..++++++|.++.+++.+|+|..+ ....
T Consensus       175 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  247 (352)
T cd06174         175 -------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLI  247 (352)
T ss_pred             -------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                   2223222222222222123445566676664 999999999999999999999999999999999888 6555


Q ss_pred             HHHHHH
Q 010361          468 GLIFQA  473 (512)
Q Consensus       468 ~l~~Q~  473 (512)
                      +.....
T Consensus       248 ~~~~~~  253 (352)
T cd06174         248 GLLLAA  253 (352)
T ss_pred             HHHHHH
Confidence            554333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.28  E-value=6.8e-09  Score=108.69  Aligned_cols=270  Identities=13%  Similarity=0.018  Sum_probs=157.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhH-HHHHHHHHHHH
Q 010361          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPA-YICLNTVQAAA  225 (512)
Q Consensus       148 ~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~v-mi~~dlvq~~~  225 (512)
                      ..+.++++.+++.++..+....+|.++...++ |...+|+......+...+++++.|.+.||++|||. ++.+.+.-.+ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~-   94 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVL-   94 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-
Confidence            46789999999999999999999999988888 88888888766677778888888888999998875 4555543211 


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                         .+.+  ... .    .+  .+.+++...+++.......+..+ ++-+||.    +++ +......|+..+....++.
T Consensus        95 ---~~~~--~~~-~----~~--~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~~~~~~~~~~~lg~  156 (393)
T PRK15011         95 ---ACTL--FAW-N----RN--YFVLLFVGVFLSSFGSTANPQMF-ALAREHA----DKT-GREAVMFSSFLRAQVSLAW  156 (393)
T ss_pred             ---HHHH--HHH-h----hH--HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHh----hhc-cchHHHHHHHHHHHHHHHH
Confidence               1111  111 1    11  12223333334444444443333 2323432    221 1234566788888889999


Q ss_pred             HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (512)
                      ++||+++|.+...+|..........   ..+...+   .....+  |+.+++++ +        +  ++.       .+.
T Consensus       157 ~~g~~i~~~l~~~~gw~~~f~~~~~---~~~~~~~---~~~~~~--~~~~~~~~-~--------~--~~~-------~~~  210 (393)
T PRK15011        157 VIGPPLAYALAMGFSFTVMYLSAAV---AFIVCGV---MVWLFL--PSMRKELP-L--------A--TGT-------LEA  210 (393)
T ss_pred             HHhhHHHHHHHHhcChHHHHHHHHH---HHHHHHH---HHHhhc--CccCCCCc-c--------c--ccc-------ccc
Confidence            9999999999877765432222111   1111111   111111  21110000 0        0  000       000


Q ss_pred             HHHhHhhhhcC-cchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          386 IKLGWKEYMQQ-PVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       386 i~eG~~~y~~q-pvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      .       .++ +.....+....+.+.....+...++.|+++ .|+++.++|.+.+...++++++.++.+++.+|+|..|
T Consensus       211 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~  283 (393)
T PRK15011        211 P-------RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF  283 (393)
T ss_pred             c-------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            0       112 111222222222222212233456667764 7999999999999888889999999999999999888


Q ss_pred             HHHHHH
Q 010361          464 AGAAGL  469 (512)
Q Consensus       464 agl~~l  469 (512)
                      ....+.
T Consensus       284 ~~~~~~  289 (393)
T PRK15011        284 LMRVAA  289 (393)
T ss_pred             HHHHHH
Confidence            665543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.27  E-value=7.6e-09  Score=109.67  Aligned_cols=263  Identities=13%  Similarity=0.044  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHH
Q 010361          153 YACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAM  232 (512)
Q Consensus       153 ~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~l  232 (512)
                      -...+++.+..-+..-++|-+..+...+.-.++.......+...+..++.|.+.||++||+++....++..+.   + .+
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~---~-~~   97 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA---C-AA   97 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH---H-HH
Confidence            3344556666677777777654444436666666666667788889999999999999999998887654321   1 11


Q ss_pred             HHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 010361          233 IIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLF  312 (512)
Q Consensus       233 i~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lg  312 (512)
                        ... .    .+  ...+++.-++.|+.+........ ++.+|    ..++   ++..++++.+.....++.++||.++
T Consensus        98 --~~~-a----~~--~~~l~~~r~l~Gi~~~~~~~~~~-~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~g~~lg  160 (413)
T PRK15403         98 --TLF-T----TS--MTQFLIARFIQGTSICFIATVGY-VTVQE----AFGQ---TKGIKLMAIITSIVLVAPIIGPLSG  160 (413)
T ss_pred             --HHH-c----CC--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hcCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111 1    11  12334444455555544333332 23234    2333   3688999999999999999999999


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhh
Q 010361          313 GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKE  392 (512)
Q Consensus       313 GlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~  392 (512)
                      |.+....+......+...   ..+...+   .....+  |+.   ++++        + ++.       ..++..++++.
T Consensus       161 ~~l~~~~gw~~~f~~~~~---~~~i~~~---~~~~~l--p~~---~~~~--------~-~~~-------~~~~~~~~~~~  213 (413)
T PRK15403        161 AALMHFVHWKVLFAIIAV---MGLIAFV---GLLLAM--PET---VKRG--------A-VPF-------SAKSVLRDFRN  213 (413)
T ss_pred             HHHHHhcCHHHHHHHHHH---HHHHHHH---HHHHhC--CCC---cccc--------C-CCC-------ChHHHHHHHHH
Confidence            999887665433222221   1111111   111111  211   1000        0 000       11234567788


Q ss_pred             hhcCcchhHHHHHH-HHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhH
Q 010361          393 YMQQPVLPASLAYV-LLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (512)
Q Consensus       393 y~~qpvl~asla~a-lL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ra  464 (512)
                      .++||.++...... +.+... ..+....+.|+++ .|+++..+|+.......++++|+.+..++.+|.+..|.
T Consensus       214 ll~~~~~~~~~l~~~~~~~~~-~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        214 VFRNRLFLTGAATLSLSYIPM-MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HHcCHHHHHHHHHHHHHHHHH-HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            88999777654433 333322 3344455667776 59999999999988888888988888887766554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.26  E-value=5.3e-09  Score=111.14  Aligned_cols=289  Identities=15%  Similarity=0.062  Sum_probs=171.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~l  228 (512)
                      +..+..+.++..++..+...++|.+..+...+...++.......+..++..|+.|.+.||++||++++.+.++..+.   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---   80 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG---   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH---
Confidence            45678899999999999999999998776658888899999999999999999999999999999998887654332   


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilG  308 (512)
                      + .+  ..  ..   .+  .+.+++.-++.|.......+.....+ .|    ..++   ++..++++.......++.++|
T Consensus        81 ~-~~--~~--~~---~~--~~~l~~~~~~~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~~g~~~g  142 (485)
T TIGR00711        81 S-LL--CG--VA---PN--LELMIIFRVIQGFGGGPLIPLSFSTL-LN----IYPP---EKRGRAMAIWGLTVLVAPALG  142 (485)
T ss_pred             H-HH--Hh--Cc---CC--HHHHHHHHHHHHhhhhhHHHHHHHHH-HH----HCCH---HHHHHHHHHHHHHHHHHhhhh
Confidence            1 11  11  11   11  12233334445554444444433322 23    3333   368889999999999999999


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCC---------------CCCCCCC
Q 010361          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRT---------------SNEGPVP  373 (512)
Q Consensus       309 P~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~---------------~~~~~~~  373 (512)
                      |.++|.+....+......+.....+.   ..++   .....  ++.+ +++.++.+..               .+++++.
T Consensus       143 ~~~~~~l~~~~~w~~~f~~~~~~~~~---~~~~---~~~~~--~~~~-~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~  213 (485)
T TIGR00711       143 PTLGGWIIENYHWRWIFLINVPIGII---VVVV---AFFIL--PRDK-PAASENFDFLGLLLLSVGLGSLLYGLSEGPER  213 (485)
T ss_pred             hccHhHhccCcCceehhhhhhHHHHH---HHHH---HHHHc--CCcc-ccccCCCcHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            99999998866644333332221111   1111   11111  1111 0000000000               0000000


Q ss_pred             CCcchhHHhH---------------HHHH-----HhHhhhhcCcchhHHHHH-HHHHHHhhhhhhHHHHHHHHH-hCCCc
Q 010361          374 DADNIVDVGI---------------EAIK-----LGWKEYMQQPVLPASLAY-VLLCLNVVLTPGSLMTAFLTQ-RGLNP  431 (512)
Q Consensus       374 ~~~~~~~~~~---------------~~i~-----eG~~~y~~qpvl~asla~-alL~~tvll~~~~l~v~yl~~-lGls~  431 (512)
                      +..+ .....               ++.+     ..+ ..+++|.+...... .+.++.. ......++.|+++ .|+++
T Consensus       214 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~s~  290 (485)
T TIGR00711       214 GWFD-SNEILILSITGLVAIIAFVVWELTDDNPLVDL-RLFKYRNFTIGCVYMSLLGLGL-YGSFYLLPLYLQQVLGYTA  290 (485)
T ss_pred             CCCC-chHHHHHHHHHHHHHHHHHHHHHcCCCCccCH-HHHcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCH
Confidence            0000 00000               0000     011 23455544443332 2333322 2233456667775 79999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361          432 SIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       432 ~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~  470 (512)
                      .+.|++....+++.++|..+.+++.+|+|..+...++..
T Consensus       291 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~  329 (485)
T TIGR00711       291 LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI  329 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            999999999999999999999999999998877655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.25  E-value=3.4e-09  Score=110.24  Aligned_cols=272  Identities=15%  Similarity=0.085  Sum_probs=164.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      ..+++..++.++++-.++..+....+|.+..+..-|...++.......+...+.+++.|.+.||++||+++...-++-.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~   83 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999987644989999999999999999999999999999999998877654322


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                          ...+  ... .    .+  .+.+++..++.|.......+..+.++.+     ..++   ++..++.+.....-.+.
T Consensus        84 ----~~~~--~~~-~----~~--~~~l~~~~~l~G~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~g  142 (381)
T PRK03633         84 ----GCAG--LGL-M----VG--FWSWLAWRFVAGIGCAMIWVVVESALMC-----SGTS---RNRGRLLAAYMMVYYLG  142 (381)
T ss_pred             ----HHHH--HHH-h----cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCH---HHHHHHHHHHHHHHHHH
Confidence                1111  111 1    11  2233444444455444444433333322     1222   25677777777777777


Q ss_pred             HHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHH
Q 010361          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (512)
                      ..+||.+++.+......... +...   .... ..+  .....+.  ++   +++          ++++.     .+   
T Consensus       143 ~~~g~~~~~~l~~~~~~~~~-~~~~---~~~~-~~~--~~~~~~~--~~---~~~----------~~~~~-----~~---  192 (381)
T PRK03633        143 TVLGQLLVSKVSTELMSVLP-WVTG---LVLA-AIL--PLLFTRI--LN---QQA----------ENHDS-----TS---  192 (381)
T ss_pred             HHHHHHHHhcccccccchHH-HHHH---HHHH-HHH--HHHHhcc--cC---CCC----------CCCCC-----CC---
Confidence            88888888887654211111 1111   0100 011  0111111  10   000          00000     01   


Q ss_pred             HHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhH
Q 010361          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (512)
Q Consensus       385 ~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ra  464 (512)
                           ++..+++|-++..+...+.+........+.+..|+++.|.++...|.+.+...+++++|.+..+++.+|+|..+.
T Consensus       193 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  267 (381)
T PRK03633        193 -----IWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV  267 (381)
T ss_pred             -----HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH
Confidence                 112345555443322222221111123345677888889999999999999999999999999999999998876


Q ss_pred             HHHHHHHH
Q 010361          465 GAAGLIFQ  472 (512)
Q Consensus       465 gl~~l~~Q  472 (512)
                      ...+....
T Consensus       268 l~~~~~~~  275 (381)
T PRK03633        268 LRVQVFVV  275 (381)
T ss_pred             HHHHHHHH
Confidence            65544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.25  E-value=5e-09  Score=112.17  Aligned_cols=157  Identities=12%  Similarity=0.004  Sum_probs=108.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      |.+.+..++++.+++.+...+....+|.+.....-|....+.......+..++.+++.|.++||++||+++..+.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   97 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV   97 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44677889999999999988888888887654433888888888888889999999999999999999998888765433


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                      .    +.+..+.       .+  .+.+++..++.|.............+. |    ..++   ++..++++.......++
T Consensus        98 ~----~~~~~~~-------~~--~~~l~~~~~l~G~~~~~~~~~~~~~~~-~----~~~~---~~r~~~~~~~~~~~~~g  156 (496)
T PRK03893         98 G----TLACGFA-------PG--YWTLFIARLVIGMGMAGEYGSSATYVI-E----SWPK---HLRNKASGFLISGFSIG  156 (496)
T ss_pred             H----HHHHHHH-------hH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HcCH---HHHHHHHHHHHHHHHHH
Confidence            2    1111111       11  123344444555544443333332221 3    2333   37888999999988999


Q ss_pred             HHHhHHHHHHHHhhcchh
Q 010361          305 EIAGASLFGILLSKYEPV  322 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~  322 (512)
                      .++||.+++.+....+..
T Consensus       157 ~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893        157 AVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHHHhccCCHH
Confidence            999999999998866543

>TIGR00895 2A0115 benzoate transport

Probab=99.22  E-value=3.1e-09  Score=108.44  Aligned_cols=280  Identities=15%  Similarity=0.096  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHH
Q 010361          155 CCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMII  234 (512)
Q Consensus       155 g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~  234 (512)
                      ..+..........+..|.+.....-+....+.......+..++.+++.|.++||++||+++..+.++..+.    ..+  
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~----~~~--   98 (398)
T TIGR00895        25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF----TLL--   98 (398)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH----HHH--
Confidence            33444444445555666665443338888898888889999999999999999999999998887654331    111  


Q ss_pred             HHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010361          235 HAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGI  314 (512)
Q Consensus       235 ~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGl  314 (512)
                      ... .    .+  .+.+++..++.|.......+.....+ .||    .++   ++..++++.......+..++||.++|.
T Consensus        99 ~~~-~----~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~----~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~  163 (398)
T TIGR00895        99 CAL-A----TN--VTQLLILRFLAGLGLGGLMPNLNALV-SEY----APK---RFRGTAVGLMFCGYPIGAAVGGFLAGW  163 (398)
T ss_pred             HHH-c----cc--hHHHHHHHHHHhcccccchhhHHHHH-HHH----cCH---HhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence            111 1    11  12233334444544444333333222 233    333   368889999999999999999999999


Q ss_pred             HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc-----------cCCCCCCCCCCCCcchhHHhH
Q 010361          315 LLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQS-----------CCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       315 L~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      +....+......+....   .+....+..+.+.+-  +.....+++++           ..++ .++..++.+.    ..
T Consensus       164 l~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~  233 (398)
T TIGR00895       164 LIPVFGWRSLFYVGGIA---PLLLLLLLMRFLPES--IDFLVSKRPETVRRIVNAIAPQMQAE-AQSALPEQKA----TQ  233 (398)
T ss_pred             HhhcccceeehhhhhhH---HHHHHHHHHHhCCCC--ChHHHhcCHHHHHHHHHHHHHhcccc-cccccccccc----cc
Confidence            98866543322222111   111111111111100  00000000000           0000 0000000000    00


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHH---HHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLC---LNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~---~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                      ++.++.++..++++..+....+.+.+   ..........++.+..+.|+++...|.+.+...+++++|.++.+++.+|+|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (398)
T TIGR00895       234 GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLG  313 (398)
T ss_pred             chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            11122333344444433322221111   111011222334444568999999999999999999999999999999999


Q ss_pred             hhhHH
Q 010361          461 ILKAG  465 (512)
Q Consensus       461 ~~rag  465 (512)
                      ..+..
T Consensus       314 ~~~~~  318 (398)
T TIGR00895       314 PRVTA  318 (398)
T ss_pred             hHHHH
Confidence            76443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.22  E-value=1.6e-08  Score=102.14  Aligned_cols=258  Identities=12%  Similarity=0.008  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 010361          166 WNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSS  245 (512)
Q Consensus       166 ~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~  245 (512)
                      +..-.|.+..+..-|...++....+..+...+..|+.|.+.||++||+++..+.++..+.   . .  ...+. .    +
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~---~-~--~~~~~-~----~   90 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG---F-T--FYAIA-D----S   90 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH---H-H--HHHHH-H----H
Confidence            344455554444338899999999999999999999999999999999998887654332   1 1  11111 1    1


Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHH
Q 010361          246 MLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCL  325 (512)
Q Consensus       246 ~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i  325 (512)
                        .+.+++..++.|..+..........++ +|.    ++    +..++++.......+..++++++.+.+.+..+.....
T Consensus        91 --~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~----~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f  159 (377)
T TIGR00890        91 --LAALYLTYGLASAGVGIAYGIALNTAV-KWF----PD----KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAF  159 (377)
T ss_pred             --HHHHHHHHHHHhHHHHHHHHhHHHHHH-HHc----Cc----ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHH
Confidence              122333333444433332222222222 332    22    4567788887777777766665666665544432222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHH
Q 010361          326 KFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAY  405 (512)
Q Consensus       326 ~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~  405 (512)
                      .+..+   ..+.....   ....+..+  +++++++          +.+.+        +....++..+++|.++.....
T Consensus       160 ~~~~~---~~~~~~~~---~~~~~~~~--~~~~~~~----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~  213 (377)
T TIGR00890       160 IYMGI---IFLLVIVL---GAFLIGYP--PGQLIKT----------NIEVS--------VKDYTVWEMLRTPQFWVLYLS  213 (377)
T ss_pred             HHHHH---HHHHHHHH---HHHheecC--chhcccc----------Ccccc--------hhhhhHHHHHcCccHHHHHHH
Confidence            22111   11111111   11111111  0000000          00000        001233445667765443222


Q ss_pred             -HHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 010361          406 -VLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQ  472 (512)
Q Consensus       406 -alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q  472 (512)
                       .+.++.. .........|.++.|+++...|.+.+..++++++|+++.+++.+|+|..+....+....
T Consensus       214 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  280 (377)
T TIGR00890       214 FFLNAVSG-LLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGIS  280 (377)
T ss_pred             HHHHhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence             2222221 12333455676778999999999999999999999999999999999888766555433

>PRK10504 putative transporter; Provisional

Probab=99.20  E-value=2.5e-08  Score=106.36  Aligned_cols=295  Identities=14%  Similarity=0.011  Sum_probs=173.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       146 ~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      ++.++.++.+.++..+...+...++|.+..+..-|....+.......+...+..++.|.+.||++||++++.+.++-.+ 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~-   87 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL-   87 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH-
Confidence            4467889999999999999999999999877544888888888888888899999999999999999998876543221 


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                           ..+...+.     .+  .+.+++..++.|.......+.....+ .||    .++   ++..++++..+....++.
T Consensus        88 -----~~~~~~~~-----~~--~~~l~~~~~l~g~~~~~~~~~~~~~~-~~~----~~~---~~~~~~~~~~~~~~~~g~  147 (471)
T PRK10504         88 -----GSLFCALS-----GT--LNELLLARVLQGVGGAMMVPVGRLTV-MKI----VPR---EQYMAAMTFVTLPGQVGP  147 (471)
T ss_pred             -----HHHHHHHh-----CC--HHHHHHHHHHHHhhhHHHHHHHHHHH-HHH----cCH---HHHHHHHHHHHHHHHHHH
Confidence                 11111111     11  12233334445554444443333323 233    233   367889999999999999


Q ss_pred             HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCC-------------CCCCCCC
Q 010361          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCR-------------TSNEGPV  372 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~-------------~~~~~~~  372 (512)
                      .+||.++|.+....+......++....   .....+   .....  +..+..+...+...             ..++++.
T Consensus       148 ~~g~~~~g~l~~~~gw~~~f~~~~~~~---~l~~~~---~~~~~--~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  219 (471)
T PRK10504        148 LLGPALGGLLVEYASWHWIFLINIPVG---IIGAIA---TLMLM--PNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKG  219 (471)
T ss_pred             HhhhHHHHHHHhhccHHHHHHHHHHHH---HHHHHH---HHHhC--CCccccCCCCChHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999988766433222221111   111111   11111  11100000000000             0000000


Q ss_pred             CCCcc-hhHH------------hHHHHH-----HhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcch
Q 010361          373 PDADN-IVDV------------GIEAIK-----LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSI  433 (512)
Q Consensus       373 ~~~~~-~~~~------------~~~~i~-----eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~  433 (512)
                      ..-.. ....            ..++.+     -.++ ++++|-++..+...+++...........+.|.+. .|.++..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (471)
T PRK10504        220 LGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH  298 (471)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            00000 0000            000000     0122 4677766665555444433212333456667764 8999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361          434 IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       434 iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~  470 (512)
                      .|++....+++++.+..+.+++.+|+|..+....+..
T Consensus       299 ~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~  335 (471)
T PRK10504        299 AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTL  335 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            9999999999999999999999999999888766554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.20  E-value=1.1e-08  Score=106.69  Aligned_cols=287  Identities=13%  Similarity=0.081  Sum_probs=157.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       146 ~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +|+|+.+-..+++=..+-.++.--+|.++.+..+ +...+++......+..++.+|+.|.+.||++||+.++.+.+....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~   80 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLV   80 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4678888888888888888888888889888777 999999999999999999999999999999999999877654322


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                      .   .+....+.  ...    ......+....+.+.+..+...+...+. .+|++...++    + ...-+..+....++
T Consensus        81 ~---~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~----~-~~~~g~~~~~~~~g  145 (396)
T TIGR00882        81 L---FAPFFIYV--FGP----LLQSNILVGAIVGGLYLGFVFSAGAGAI-EAYIEKVSRN----S-NFEYGKARMFGCVG  145 (396)
T ss_pred             H---HHHHHHHH--hhh----HHHHHHHHHHHHHHHHHHHHhccchhhH-HHHHHHhhhh----c-ccccchhhhhcccH
Confidence            1   11111111  100    0000111111111222222222222222 2332222111    1 12335666777888


Q ss_pred             HHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHH
Q 010361          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (512)
                      ..+||.++|.+... +......+...   ..+...++   . .... ++.+  ++++  .++ ..+++.+     +... 
T Consensus       146 ~~~g~~~~g~l~~~-~~~~~f~~~~~---~~~~~~~~---~-~~~~-~~~~--~~~~--~~~-~~~~~~~-----~~~~-  205 (396)
T TIGR00882       146 WALCASIAGILFSI-DPQIVFWLGSG---FALILMLL---L-MFAK-PKAP--SSAT--VAN-ALGANAS-----AFSL-  205 (396)
T ss_pred             HHHHHHHHhhhhcc-CchHHHHHHHH---HHHHHHHH---H-HHhC-CCCc--hhhh--hhc-ccccccC-----CCCH-
Confidence            99999999988763 54332222211   11111111   1 1111 1110  0000  000 0000000     0001 


Q ss_pred             HHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH----hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ----RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       385 ~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~----lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                         +.++..+++|-++..+...+........+...+..|+++    .+.+...+|...+..++.+.++.+..+++.+|+|
T Consensus       206 ---~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g  282 (396)
T TIGR00882       206 ---KLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIG  282 (396)
T ss_pred             ---HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               123456677755433222222111101233345666653    2667778999999999999999999999999999


Q ss_pred             hhhHHHHHHH
Q 010361          461 ILKAGAAGLI  470 (512)
Q Consensus       461 ~~ragl~~l~  470 (512)
                      ..+....+..
T Consensus       283 ~~~~l~~~~~  292 (396)
T TIGR00882       283 AKNALLIAGT  292 (396)
T ss_pred             cchhHHHHHH
Confidence            8887655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.19  E-value=1.2e-08  Score=106.56  Aligned_cols=278  Identities=13%  Similarity=0.062  Sum_probs=162.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHH
Q 010361          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (512)
Q Consensus       148 ~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~  227 (512)
                      +++.++.+.+.-..+..+..--+|.++.+..-|..+++.......+...+.+|+.|.+.||++|++..+..-.+-.+   
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~---   81 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASA---   81 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---
Confidence            45557777777777766666667788866422999999998888999999999999999999986432221111000   


Q ss_pred             HHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       228 ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                      +. .+....  ..   ++  .+.+++..++.+.......+..+. +-++|      +   ++..++-+.++..-.++-++
T Consensus        82 l~-~~~~~~--~~---~~--~~~l~~~~~l~~~~~~~~~p~~~a-l~~~~------~---~~~~~~~g~~~~~~slG~~~  143 (382)
T TIGR00902        82 IF-AAAFSA--GA---HN--AWLLFIAIGLFALFFSAGMPIGDA-LANTW------Q---KQFGLDYGKVRLIGSAAFII  143 (382)
T ss_pred             HH-HHHHHH--hh---hh--HHHHHHHHHHHHHHHccchhHHHH-HHHHH------H---HHcCCCccHHHHHHHHHHHH
Confidence            00 010110  11   11  122233322233322222222221 21222      1   24456678888888899999


Q ss_pred             hHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHH
Q 010361          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK  387 (512)
Q Consensus       308 GP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  387 (512)
                      ||.++|.+.+.+|.........   .. ....+    ....+ .+..+  ++++    +   + +++.     +    ..
T Consensus       144 g~~l~g~l~~~~g~~~~f~~~~---~~-~~~~~----~~~~~-~~~~~--~~~~----~---~-~~~~-----~----~~  195 (382)
T TIGR00902       144 GSALFGGLIGMFDEQNILAILT---AG-LAFML----IGFLI-KPTIP--PKDA----I---P-EDES-----Q----GD  195 (382)
T ss_pred             HHHHHHHHHHHcChhHHHHHHH---HH-HHHHH----HHHHc-CCCCC--CCcc----c---c-cccc-----c----cc
Confidence            9999999999887654322211   11 11111    11111 11110  0000    0   0 0000     0    01


Q ss_pred             HhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHH
Q 010361          388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA  467 (512)
Q Consensus       388 eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~  467 (512)
                      +.++.++|+|.++..+...++.......+.+..+.|+++.|+++.++|.+.++++++++++.++.+++.||+|..+...+
T Consensus       196 ~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       196 SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence            23456778887666544444433322345567778888899999999999999999999999999999999999887766


Q ss_pred             HHHHHHH
Q 010361          468 GLIFQAS  474 (512)
Q Consensus       468 ~l~~Q~~  474 (512)
                      +......
T Consensus       276 ~~~~~~~  282 (382)
T TIGR00902       276 SAIACVG  282 (382)
T ss_pred             HHHHHHH
Confidence            6655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10133 L-fucose transporter; Provisional

Probab=99.17  E-value=5.5e-08  Score=104.29  Aligned_cols=283  Identities=11%  Similarity=0.029  Sum_probs=164.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~  227 (512)
                      +..+..-.++-.+.+.+-..-+|.+ ...++ |....++......+...+.+++.|.++||++|||++...-++-.+.  
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~--  104 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG--  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--
Confidence            5666666677677777777888887 44555 9999999999999999999999999999999999999887654332  


Q ss_pred             HHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       228 ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                        ..+.... ...   .+  .+.+++..++.|+......++.+..+. |    +.+++   +-....+..+..-.+.-.+
T Consensus       105 --~~l~~~~-~~a---~~--~~~ll~~r~l~G~g~g~~~~~~~~~v~-~----~~~~~---~~~~~~s~~~~~~~~G~~~  168 (438)
T PRK10133        105 --AALFWPA-AEI---MN--YTLFLVGLFIIAAGLGCLETAANPFVT-V----LGPES---SGHFRLNLAQTFNSFGAII  168 (438)
T ss_pred             --HHHHHHH-Hhc---CC--HHHHHHHHHHHHHHHHHHHhhHHHHHH-H----hCChh---hHHHHHHHHHHHHHHHHHH
Confidence              1111100 111   12  223444455666666666665554442 3    22221   2222456677777788899


Q ss_pred             hHHHHHHHHhhcch------------------hhHH----HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCC
Q 010361          308 GASLFGILLSKYEP------------------VTCL----KFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCR  365 (512)
Q Consensus       308 GP~lgGlL~s~~s~------------------~~~i----~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~  365 (512)
                      ||.+++.+.....+                  ....    ...+.. ...+....+......+  .|+.   ++++    
T Consensus       169 g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~-~~~v~~~~~~~~~~~~--~p~~---~~~~----  238 (438)
T PRK10133        169 AVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMI-IVAIVLLVALLIMLTK--FPAL---QSDN----  238 (438)
T ss_pred             HHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc--CCCC---Cccc----
Confidence            99988876521100                  0000    000000 0001111111111111  1111   0000    


Q ss_pred             CCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHH-HH-hCCCcchhHHHHHHHHH
Q 010361          366 TSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL-TQ-RGLNPSIIGGFSGLCAS  443 (512)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl-~~-lGls~~~iG~~~g~gav  443 (512)
                          . .++ +  .    .+..+.++..+++|.++..+...+++.............|+ ++ .|+++...|+......+
T Consensus       239 ----~-~~~-~--~----~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~  306 (438)
T PRK10133        239 ----H-SDA-K--Q----GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_pred             ----c-ccc-c--c----cchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence                0 000 0  0    11223455667888766544433444322112223445675 33 69999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 010361          444 MGVAATFLSAYLVRRLGILKAGAAGLIFQ  472 (512)
Q Consensus       444 gGLlGt~lap~L~rRlG~~ragl~~l~~Q  472 (512)
                      ++++|.++.+++.+|+|..|...++....
T Consensus       307 ~~~vG~~~~g~l~~r~g~~~~l~~~~~~~  335 (438)
T PRK10133        307 CFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            99999999999999999998876665433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.15  E-value=6.4e-08  Score=105.31  Aligned_cols=283  Identities=15%  Similarity=0.055  Sum_probs=161.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeeccc-----CChhH-HHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHS-----PRIPA-YICL  218 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-----~Rr~v-mi~~  218 (512)
                      ++|+...++.-.+.+-+...+..-.+|.++.+..-+.-.++.+..+ .+|+ ++.++.|.++||+     +|||. +..+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~-~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~   87 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLV-GQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLAT   87 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHH-HHHHHHHHHHHcccccCCCCchHHHHHH
Confidence            3444555666666677777788888888876653387778876443 4555 5899999999998     78875 5455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHH
Q 010361          219 NTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN  298 (512)
Q Consensus       219 dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~  298 (512)
                      .+.-.+    +...  ..+ ..+ ..+  .+.+++..++.+.+....+++.+. +-.||    .++   ++..++|+...
T Consensus        88 ~i~~~~----~~~~--~a~-~~~-~~~--l~~l~~~~~l~~~~~a~~~i~~~a-~~~~~----~~~---~~rg~~~~i~~  149 (491)
T PRK11010         88 QLLLLV----AIAA--MGF-LEP-GTQ--LRWLAALAVVIAFCSASQDIVFDA-WKTDV----LPA---EERGAGAAISV  149 (491)
T ss_pred             HHHHHH----HHHH--HHH-cCC-cch--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----cCh---hhhHHHHHHHH
Confidence            433111    1111  111 111 112  222333444555555555555443 22344    333   26899999999


Q ss_pred             HHHHHHHHHhHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcc
Q 010361          299 RIDLLCEIAGASLFGILLS-KYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADN  377 (512)
Q Consensus       299 ~Idl~~kilGP~lgGlL~s-~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~  377 (512)
                      ....+..++||.+++.+.. ..|......+..+   ..++..+    ....+  ++.++.++            +++ + 
T Consensus       150 ~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~---l~ll~~l----~~~~~--~e~~~~~~------------~~~-~-  206 (491)
T PRK11010        150 LGYRLAMLVSGGLALWLADRYLGWQGMYWLMAA---LLIPCII----ATLLA--PEPTDTIP------------VPK-T-  206 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH---HHHHHHH----HHHhc--CCCccccc------------ccc-c-
Confidence            9999999999999999988 3454332222221   1111111    11111  21110000            000 0 


Q ss_pred             hhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHH-HHHHHHHHHHHHHHHHH
Q 010361          378 IVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFS-GLCASMGVAATFLSAYL  455 (512)
Q Consensus       378 ~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~-g~gavgGLlGt~lap~L  455 (512)
                          ..+...+.++.++++|-....+...+++.............|+. +.|+++..+|.+. ..+.+++++|+++.+++
T Consensus       207 ----~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L  282 (491)
T PRK11010        207 ----LEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGIL  282 (491)
T ss_pred             ----hhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00112345556666664443333333332211123345666765 5899999999998 57778999999999999


Q ss_pred             HHhhChhhHHHHHHHHHHH
Q 010361          456 VRRLGILKAGAAGLIFQAS  474 (512)
Q Consensus       456 ~rRlG~~ragl~~l~~Q~~  474 (512)
                      .+|+|..|....+...+..
T Consensus       283 ~dr~g~~~~l~i~~~l~~l  301 (491)
T PRK11010        283 MQRLSLFRALMIFGILQGV  301 (491)
T ss_pred             HHHHhHHHHHHHHHHHHHH
Confidence            9999988876655554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.14  E-value=4.4e-08  Score=102.86  Aligned_cols=279  Identities=11%  Similarity=0.066  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc----CC-hhHHHHHHHHHHHHHHH
Q 010361          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS----PR-IPAYICLNTVQAAAQLL  228 (512)
Q Consensus       155 g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~----~R-r~vmi~~dlvq~~~v~l  228 (512)
                      |++..+....+...=++.+..+..+ +...+|....+..+...+..|++|.+.||.    +| |+.+..+-+.-+    +
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~----i   82 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFS----I   82 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHH----H
Confidence            4444555555555556666777778 999999999999999999999999999984    44 344544433211    1


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHH-HHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWF-FVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~-~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                      +..+ .+  ..+. ........++ +..++.+....+.++.+..     +.+.+.++  +++..++++..+....+..++
T Consensus        83 ~~~~-~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-----l~~~~~~~--~~~R~~~~~~~~~~~~~g~~l  151 (437)
T TIGR00792        83 VLVL-LF--TTPD-FSATGKLVYAYITYILLGLFYSFVNIPYWS-----LVPAITLD--PRERESLSTFRRFGATLGGLL  151 (437)
T ss_pred             HHHH-HH--hCCC-CCcchHHHHHHHHHHHHHHHHHhhcccHhh-----CcccccCC--HHHHHHHHHHHHHHHHHHHHH
Confidence            2112 12  1111 1111111122 2223344444444444332     34445543  246888888888777777777


Q ss_pred             hHHHHHHHHhhcch---hhHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          308 GASLFGILLSKYEP---VTCLKFAAGLI-MWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       308 GP~lgGlL~s~~s~---~~~i~~~~~~~-~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      ++.+++.++..++.   ..+....+.+. +..+...+   .....+  +|.  +++.+       ++ + +.+       
T Consensus       152 ~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~---~~~~~~--~e~--~~~~~-------~~-~-~~~-------  208 (437)
T TIGR00792       152 VAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI---ICFFGT--KER--YSEIP-------KN-I-EKK-------  208 (437)
T ss_pred             HHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH---HHHcCC--Eec--CCCCC-------cc-c-ccC-------
Confidence            77777777654331   11111111111 11111111   111111  111  00000       00 0 000       


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~  462 (512)
                      ...++.++..+++|-++..+...+++......+......|.+. .| ++...+.+.+...+++++++.+.+++.+|+|..
T Consensus       209 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~  287 (437)
T TIGR00792       209 LSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK  287 (437)
T ss_pred             CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            1245677888899977765444433332211222334444443 45 567888888899999999999999999999988


Q ss_pred             hHHHHHHHHH
Q 010361          463 KAGAAGLIFQ  472 (512)
Q Consensus       463 ragl~~l~~Q  472 (512)
                      ++..++....
T Consensus       288 ~~~~~~~~~~  297 (437)
T TIGR00792       288 ILFAGGILLM  297 (437)
T ss_pred             HHHHHHHHHH
Confidence            8876665433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.13  E-value=1.3e-07  Score=101.20  Aligned_cols=283  Identities=11%  Similarity=-0.011  Sum_probs=151.0

Q ss_pred             hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWN----FAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~----FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      -+.++.+.++...+..+..    ++.|.+. .. + |....+.......+...+.+++.|.+.||++||++++.+.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            3556777777777766653    4556444 33 6 88999999999999999999999999999999999988876543


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +.    ..+  ..+. .....+  .+.+++..++.|..+....+.....+. +|    .++   ++..++++.......+
T Consensus       105 i~----~~~--~~~~-~~~~~~--~~~~~~~~~l~gi~~g~~~~~~~~~~~-~~----~~~---~~r~~~~~~~~~~~~~  167 (452)
T PRK11273        105 AV----MLF--MGFV-PWATSS--IAVMFVLLFLCGWFQGMGWPPCGRTMV-HW----WSQ---KERGGIVSVWNCAHNV  167 (452)
T ss_pred             HH----HHH--HHhh-hccccc--HHHHHHHHHHHHHHHhccchHHHHHHH-Hh----CCh---HHHHHHHHHHHHHHHh
Confidence            32    111  1111 000011  122333344555555544332222222 33    233   3678888887777666


Q ss_pred             HH-HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHh
Q 010361          304 CE-IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVG  382 (512)
Q Consensus       304 ~k-ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (512)
                      +. +.+|++++.+....+......+...   ..+...++..+.+++  .++....++.++..++ ..+...+.++ .+  
T Consensus       168 g~~~~~~l~~~~~~~~~gw~~~f~i~~~---~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~--  238 (452)
T PRK11273        168 GGGLPPLLFLLGMAWFNDWHAALYMPAF---AAILVALFAFAMMRD--TPQSCGLPPIEEYKND-YPDDYNEKHE-QE--  238 (452)
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHHHccC--CHhhcCCCChhhhhhc-cccccccccC-CC--
Confidence            64 6677655433322232222222111   111111111111111  0100000000000000 0000000000 00  


Q ss_pred             HHHHHHhH-hhhhcCcchhHHHHH-HHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          383 IEAIKLGW-KEYMQQPVLPASLAY-VLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       383 ~~~i~eG~-~~y~~qpvl~asla~-alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                       .+.++.+ +..+++|.++..... .+.+... ..+...++.|+++ .|+++...|......+++++.|.++++++.+|+
T Consensus       239 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~  316 (452)
T PRK11273        239 -LTAKQIFMQYVLPNKLLWYIAIANVFVYLLR-YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  316 (452)
T ss_pred             -ccHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0123333 335678876654333 3333322 3345577888886 699999999999999999999999999999998


Q ss_pred             Ch
Q 010361          460 GI  461 (512)
Q Consensus       460 G~  461 (512)
                      +.
T Consensus       317 ~~  318 (452)
T PRK11273        317 FR  318 (452)
T ss_pred             cc
Confidence            54

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.12  E-value=1.7e-07  Score=97.60  Aligned_cols=273  Identities=19%  Similarity=0.133  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH--HHHHHHHHcccccee-eecccCChhHHHHHHHHHHHHHHHH
Q 010361          153 YACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGF--FSKLILIVGGPLVGK-LMDHSPRIPAYICLNTVQAAAQLLS  229 (512)
Q Consensus       153 ~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~--~~~Lp~ll~gp~aG~-lvDR~~Rr~vmi~~dlvq~~~v~ls  229 (512)
                      ..-.+..-+.-.+..-.+|.++.+..-|...+|+++.  .-.+-..+.+|+.+. ..||++|||.++..-  |...   .
T Consensus         7 ~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~--~~~~---~   81 (390)
T TIGR02718         7 GLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM--QCLV---S   81 (390)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH--HHHH---H
Confidence            3344555566677888888888877448888888753  336666889999966 689998888754442  2211   1


Q ss_pred             HHHHHHHHhhcccCCCchhHHHHH-HHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010361          230 AAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (512)
Q Consensus       230 ~~li~~~~~~~~~~~~~l~~~l~~-v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilG  308 (512)
                      ..+..... ... ....  ..++. ...+.+.....    .+++.+. +.+.-.   ++++....|+.....-.+..++|
T Consensus        82 ~~~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~a~----~d~~~d~-~~~~~~---~~~~~~~~~~~~~~g~~lG~~~g  149 (390)
T TIGR02718        82 ACLASLAL-VGP-DVAG--AGWAVGLLACASLASAT----QDIATDG-MAAEHF---NGRTLAKGNAVQIAGVMIGFFGG  149 (390)
T ss_pred             HHHHHHHc-CCc-chhh--HHHHHHHHHHHHHHHHH----HHHHHHH-HHHHhC---CHhhhhHHHHHHHHHHHHHHHHH
Confidence            00111110 111 0110  11222 22222222333    3333321 111111   12245556655554445566666


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHH
Q 010361          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (512)
Q Consensus       309 P~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (512)
                      +.+.|.+.+.++......+..++.+..   ..   .. ..+ .++   +++++          +.+     ++    ...
T Consensus       150 ~~~~~~l~~~~gw~~~f~~~a~l~~~~---~~---~~-~~~-~~~---~~~~~----------~~~-----~~----~~~  199 (390)
T TIGR02718       150 GAGTLVLFGKFGQRPAFLLVACVPLAS---LV---CV-LWL-KDR---AVASP----------EAP-----LA----RRA  199 (390)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHH---HH---HH-HHc-CCC---CcCcc----------ccc-----hh----hHH
Confidence            666667777777554332222211111   11   11 111 110   00000          000     00    112


Q ss_pred             hHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHHHHHHHHHHHhhChhhHHHH
Q 010361          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCA-SMGVAATFLSAYLVRRLGILKAGAA  467 (512)
Q Consensus       389 G~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~ga-vgGLlGt~lap~L~rRlG~~ragl~  467 (512)
                      .++.++|+|.++..+...+++........+....|+++.|+++..+|++.+..+ +++++|.++.+++.+|+|..|...+
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~  279 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL  279 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            355677888766655555555432123445667788889999999999998876 5777899999999999999998877


Q ss_pred             HHHHH
Q 010361          468 GLIFQ  472 (512)
Q Consensus       468 ~l~~Q  472 (512)
                      +...+
T Consensus       280 ~~~~~  284 (390)
T TIGR02718       280 GVGLA  284 (390)
T ss_pred             HHHHH
Confidence            66655

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.12  E-value=4.2e-08  Score=102.07  Aligned_cols=294  Identities=12%  Similarity=0.010  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHH
Q 010361          158 AGNLVEQLWNFAWPSAIALLHPS--------LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (512)
Q Consensus       158 lS~~Gdri~~FAlpL~~~~l~~S--------ll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls  229 (512)
                      +..+...+...++|.......-+        ..+.+....+..+...+.+++.|.+.||++||+++....++..+.    
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~----  114 (481)
T TIGR00879        39 MFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIG----  114 (481)
T ss_pred             hcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHH----
Confidence            33344555555666555444324        678889999999999999999999999999999998877654322    


Q ss_pred             HHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhH
Q 010361          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (512)
Q Consensus       230 ~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP  309 (512)
                      ..+..+   ... ..+  .+.+++.-++.|.......+.....+ .||    .++   ++..++.+.....-.+..++||
T Consensus       115 ~~~~~~---~~~-~~~--~~~~~~~r~l~G~~~~~~~~~~~~~i-~~~----~~~---~~r~~~~~~~~~~~~~G~~~~~  180 (481)
T TIGR00879       115 AILMGL---AAF-ALS--VEMLIVGRVLLGIGVGIASALVPMYL-SEI----APK---ALRGALTSLYQLAITFGILVAY  180 (481)
T ss_pred             HHHHHH---hcc-ccc--hHHHHHHHHHHHhhhhHHHhHHHHHH-Hcc----CCh---hhhhhhhhHHHHHHHHHHHHHH
Confidence            111111   111 011  12233444455554444444333322 343    333   2678888888888888899999


Q ss_pred             HHH---HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c-ccccccc--ccCCCCCCCCCCCCcchhH--
Q 010361          310 SLF---GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV-L-DRAKCSQ--SCCRTSNEGPVPDADNIVD--  380 (512)
Q Consensus       310 ~lg---GlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~-l-~~~~~~~--~~~~~~~~~~~~~~~~~~~--  380 (512)
                      .++   +.+....+......+...   ..+ ..++..+.+..  .+. . .+.+.++  +..++..+..+++. ...+  
T Consensus       181 ~~~~~~~~~~~~~~w~~~f~~~~~---~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  253 (481)
T TIGR00879       181 GFGSGKVSLNNTLGWRIPLGLQLI---PAG-LLFLGLFFLPE--SPRWLVGKGRVEEARKSLARLRGTSGEDK-ELLDEL  253 (481)
T ss_pred             HHHHHhhcCCCCccHHHHHHHHHH---HHH-HHHHHHhcCCC--ChHHHHHcCChHHHHHHHHHHhCCCCCcH-HHHHHH
Confidence            988   544343433322222111   111 11111111110  000 0 0000000  00000000000000 0000  


Q ss_pred             HhHHH--------HHHhHhhhhcC--cchhHHHHHH----HHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 010361          381 VGIEA--------IKLGWKEYMQQ--PVLPASLAYV----LLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGV  446 (512)
Q Consensus       381 ~~~~~--------i~eG~~~y~~q--pvl~asla~a----lL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGL  446 (512)
                      ...+.        .+..|+..++.  +..+..+...    +.++..........+.+..+.|++....+.......++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  333 (481)
T TIGR00879       254 ELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNF  333 (481)
T ss_pred             HHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            00000        00112222221  1122222221    1112110111222333445689999999999999999999


Q ss_pred             HHHHHHHHHHHhhChhhHHHHHHHHHHHHH
Q 010361          447 AATFLSAYLVRRLGILKAGAAGLIFQASLL  476 (512)
Q Consensus       447 lGt~lap~L~rRlG~~ragl~~l~~Q~~~L  476 (512)
                      +|.++.+++.+|+|..+....+.....+++
T Consensus       334 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       334 AFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            999999999999999888777655444443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.09  E-value=1.9e-07  Score=100.83  Aligned_cols=282  Identities=8%  Similarity=-0.022  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecc----cCC-hhHHHHHHHHHHHHHHH
Q 010361          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH----SPR-IPAYICLNTVQAAAQLL  228 (512)
Q Consensus       155 g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR----~~R-r~vmi~~dlvq~~~v~l  228 (512)
                      |++-.++...+...=++.|..+..+ ++..+|+.-++..+--.+..|.+|.+.||    ++| |+.+...-+...+    
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i----   89 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV----   89 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH----
Confidence            3333344344433335666677778 99999999888888889999999999995    466 5555555443221    


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHH-HHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~-v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                      +..+ ++  .. +.........++. ..++.+..-.+.++.+.     .+.+.+.++  +++.++.++.-+..-.++.++
T Consensus        90 ~~~l-lf--~~-p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~-----al~~~lt~~--~~eR~~l~~~~~~~~~ig~~~  158 (473)
T PRK10429         90 VLFL-LF--SA-HLFEGTAQYVFVCVTYILWGMTYTIMDIPFW-----SLVPTLTLD--KREREQLVPYPRFFASLAGFV  158 (473)
T ss_pred             HHHH-HH--cC-CCCCccHHHHHHHHHHHHHHHHHHHHcchHH-----hhhHHhCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence            2112 12  11 1111111112222 22233444445444443     345567754  257888898866556666666


Q ss_pred             hHHHHHHHHhhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHH
Q 010361          308 GASLFGILLSKYEP---VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (512)
Q Consensus       308 GP~lgGlL~s~~s~---~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (512)
                      ++.++..++..++.   ..+......+.........  ..+...+  +|  +.+++..       +++.+.+       .
T Consensus       159 ~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~--~~~~~~~--~e--~~~~~~~-------~~~~~~~-------~  218 (473)
T PRK10429        159 TAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST--IITLRNV--HE--VYSSDNQ-------VSAEGSH-------L  218 (473)
T ss_pred             HHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH--HHHHcCc--ee--cCCcccc-------ccccccC-------C
Confidence            66666655443331   1111111111111111111  1111111  11  1000000       0000000       1


Q ss_pred             HHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhH
Q 010361          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (512)
Q Consensus       385 ~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ra  464 (512)
                      .+++.++..++||-++..+...+++........+.+..|.+...-++...+.+.+..+++++++..+.+++.||+|..++
T Consensus       219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~  298 (473)
T PRK10429        219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL  298 (473)
T ss_pred             CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            25677788888887777655554443321223344444444433367788889998889999999999999999999998


Q ss_pred             HHHHHHH
Q 010361          465 GAAGLIF  471 (512)
Q Consensus       465 gl~~l~~  471 (512)
                      ..++...
T Consensus       299 ~~~~~~~  305 (473)
T PRK10429        299 WAGASIF  305 (473)
T ss_pred             HHHHHHH
Confidence            8766653

>TIGR00896 CynX cyanate transporter

Probab=99.09  E-value=7.9e-08  Score=98.61  Aligned_cols=250  Identities=13%  Similarity=0.031  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCch
Q 010361          168 FAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSML  247 (512)
Q Consensus       168 FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l  247 (512)
                      ..+|.+..+..-|...++.......+...+.+++.|.+.||++|||++....++..+    +  .+..  ..    .+  
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~----~--~~~~--~~----~~--   86 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAA----G--ILIR--SA----PG--   86 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHH----H--HHHH--Hh----cc--
Confidence            345555544433888899999999999999999999999999999998887654322    1  1111  11    11  


Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHH
Q 010361          248 LHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKF  327 (512)
Q Consensus       248 ~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~  327 (512)
                      .+.+++..++.|.............+ .+|    .+    ++..++++.......++..+||.+++.+....+...-..+
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~-~~~----~~----~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f  157 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLI-KRD----FP----QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL  157 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHH-HHh----Cc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            12223333334443333332222222 232    22    2567788888888888889999999888765432111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHH
Q 010361          328 AAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVL  407 (512)
Q Consensus       328 ~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~al  407 (512)
                        ............  ..+     ++.+++++++          ++..           +..++..+++|.+........
T Consensus       158 --~~~~~~~~~~~~--~~~-----~~~~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       158 --AWWALPALLALL--AWI-----PQVRRRVAAN----------QTTT-----------RLTPVRIWRSPLAWQVTVFFG  207 (355)
T ss_pred             --HHHHHHHHHHHH--HHh-----hhhccccCCC----------CCCC-----------CCCCchhhcCHhHHHHHHHHH
Confidence              111110111110  111     1100000000          0000           012344566775554333222


Q ss_pred             HHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhCh-hhHHHHHHH
Q 010361          408 LCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI-LKAGAAGLI  470 (512)
Q Consensus       408 L~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~-~ragl~~l~  470 (512)
                      ++......+...++.|+++.|+++...|.+.+...+++++|.++.+++.+|++. .+...++..
T Consensus       208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~  271 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAV  271 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Confidence            222111223345677887889999999999999999999999999999999954 444444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.09  E-value=2.3e-08  Score=107.32  Aligned_cols=294  Identities=13%  Similarity=0.002  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHH
Q 010361          150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (512)
Q Consensus       150 ~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls  229 (512)
                      -.++.+.++..........+.|-+..+..-|..+.+....+..+.+.+..++.|.++||++||+++..+-++-.+.   .
T Consensus        32 ~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~---~  108 (467)
T PRK09556         32 LVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC---M  108 (467)
T ss_pred             HHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH---H
Confidence            3455566666666667778888766655448889999999999999999999999999999999987776543222   1


Q ss_pred             HHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhH
Q 010361          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (512)
Q Consensus       230 ~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP  309 (512)
                      +.+ ... .... ..+  .+.+++.-++.|..+.++.+.... +-.+|.|.    +   +..++++.....-.+..++||
T Consensus       109 ~~~-~~~-~~~~-~~~--~~~l~~~r~l~G~~~~~~~~~~~~-~i~~~~~~----~---~rg~a~gi~~~~~~lG~~l~~  175 (467)
T PRK09556        109 LGF-GAS-LGSG-SVS--LGLMIALWALSGFFQSTGGPCSYS-TITRWTPR----R---KRGRFLGFWNISHNLGGAGAG  175 (467)
T ss_pred             HHH-HHH-Hhcc-cch--HHHHHHHHHHHHHHHhccchHHHH-HHHHHcCc----c---ceeeeEEeeecccchhhhHHH
Confidence            111 010 0000 011  223344444566666665554443 33456443    2   567778887776677777777


Q ss_pred             HHHHHHHhhc-c-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHH
Q 010361          310 SLFGILLSKY-E-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK  387 (512)
Q Consensus       310 ~lgGlL~s~~-s-~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  387 (512)
                      .++..+.... + ..... +... .+..++..++ .+...+ ..|+..+.++.++..++  ...+++.....++ . ...
T Consensus       176 ~i~~~~~~~~~~~~~~~~-f~~~-g~~~~~~~i~-~~~~~~-~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~~~  247 (467)
T PRK09556        176 GVALWGANYFFDGHVIGM-FIFP-SIIALIIGFI-GLRYGS-DSPEELGWGKAEEIFGE--PISEEDKETESTD-M-TKW  247 (467)
T ss_pred             HHHHHHHHhhccCcchhH-HHHH-HHHHHHHHHH-HHHhCC-CChhhcCCCChhhcccC--ccchhhhcccccc-C-cHH
Confidence            7766655432 1 11111 1100 0111111111 111111 01111000000000000  0000000000000 0 011


Q ss_pred             Hh-HhhhhcCcchhHHHHHH-HHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhH
Q 010361          388 LG-WKEYMQQPVLPASLAYV-LLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (512)
Q Consensus       388 eG-~~~y~~qpvl~asla~a-lL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ra  464 (512)
                      +. .++.+++|.+....... +.+... ..+...++.|+++ .|+++.+.|.......+++++|.++.+++.+|+|..+.
T Consensus       248 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        248 QIFVEYVLKNPVIWLLCFANIFLYIVR-IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            21 23467888665543332 333221 2344567778875 79999999999999999999999999999999998776


Q ss_pred             HHHH
Q 010361          465 GAAG  468 (512)
Q Consensus       465 gl~~  468 (512)
                      ....
T Consensus       327 ~~~~  330 (467)
T PRK09556        327 LVAC  330 (467)
T ss_pred             HHHH
Confidence            5443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.08  E-value=1.3e-07  Score=101.61  Aligned_cols=278  Identities=9%  Similarity=0.030  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          150 YALYACCLAGNLVEQLWNFAWPSAIA---LLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       150 ~~L~~g~~lS~~Gdri~~FAlpL~~~---~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      |.++++.++.......+.++++.+..   ..++ |.-..+.......+...+.+|+.|.++||++||++++.+.++-.+ 
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~-   96 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL-   96 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH-
Confidence            55666666665544444454554443   2334 666667666666666788899999999999999999888754322 


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHH-HHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVL-VLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~-~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                         .+.+..+.       .+  .+.+++.. ++.|.....+.+.....+ .+|.    ++    +..++++.....-.+.
T Consensus        97 ---~~~~~~~~-------~~--~~~l~~~~~~l~G~~~~~~~~~~~~~~-~~~~----~~----~r~~a~g~~~~~~~~g  155 (455)
T TIGR00892        97 ---GMILASFS-------SN--VIELYLTAGFITGLGLAFNFQPSLTML-GKYF----YR----RRPLANGLAMAGSPVF  155 (455)
T ss_pred             ---HHHHHHHh-------hh--HHHHHHHHHHHHHhcchhhhhHHHHHH-HHHH----Hh----hHHHHHHHHHhcccHH
Confidence               11111111       11  11222222 233444333322222222 3453    22    4678888888888888


Q ss_pred             HHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHH
Q 010361          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (512)
                      ..+||.++|.+...++......+...+.+   ...+ ..++.++. ++..+..+++.  .++.+.+...+ +....+..+
T Consensus       156 ~~~~~~l~~~l~~~~gwr~~f~~~~~~~~---~~~v-~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~  227 (455)
T TIGR00892       156 LSTLAPLNQYLFESFGWRGSFLILGGLLL---HCCV-CGALMRPV-GPSQRVSKSKS--KEGLPPDGSTK-KLSKKSTAE  227 (455)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHH---HHHH-HHHHhCCC-Ccccccccccc--cccCCCCCccc-cccccchhh
Confidence            89999999999887764433222221111   1111 11122211 01000000000  00000000000 000011122


Q ss_pred             HHHHh--HhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010361          385 AIKLG--WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRR  458 (512)
Q Consensus       385 ~i~eG--~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rR  458 (512)
                      +..+.  ++ +++||.++..+....+.+.........+..|+++.|+++...|.+.++.+++++++..+.+++.+|
T Consensus       228 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~  302 (455)
T TIGR00892       228 KINRFLDFS-LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL  302 (455)
T ss_pred             hhhhhcchH-HhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33332  33 568887665443333222221223345677877889999999999999999999999999998876

>PRK03699 putative transporter; Provisional

Probab=99.08  E-value=1e-07  Score=99.80  Aligned_cols=271  Identities=12%  Similarity=0.019  Sum_probs=148.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      +-++..+.+.++...-..+....+|-+..+..-|...++.......+...+..++.|.+.||++||++++.+.+...+. 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~-   85 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA-   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence            3445555555555555555556666655443338888998888888999999999999999999999988877553321 


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                         ..+..+    .   .+  .+.+++..++.|.............+. +    ..+++   +...+++.....-.++.+
T Consensus        86 ---~~l~~~----~---~~--~~~~~~~~~l~G~~~g~~~~~~~~~i~-~----~~~~~---~r~~~~~~~~~~~~~g~~  145 (394)
T PRK03699         86 ---VAGLMF----S---HS--LALFSIAMFVLGVVSGITMSIGTFLIT-H----VYEGK---QRGSRLLFTDSFFSMAGM  145 (394)
T ss_pred             ---HHHHHH----c---ch--HHHHHHHHHHHHHhhHhhccchhHHhh-h----hcccc---hHHHHHHHHHHHHHHHHH
Confidence               111111    1   11  122333334455544443332222222 2    33332   445566666566666778


Q ss_pred             HhHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361          307 AGASLFGILLSK-YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (512)
Q Consensus       307 lGP~lgGlL~s~-~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (512)
                      ++|.++|.++.. .+......+...   ..+...+   +... ...|+.+  ++ +         ++++ +   +    +
T Consensus       146 ~~~~~~~~l~~~~~gw~~~f~~~~~---~~~~~~~---~~~~-~~~p~~~--~~-~---------~~~~-~---~----~  198 (394)
T PRK03699        146 IFPIIAAYLLARSIEWYWVYACIGL---VYVAIFI---LTLF-SEFPALG--KH-A---------PKAD-K---P----V  198 (394)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHH---HHHHHHH---HHHh-cCCcccc--cc-C---------cccc-C---c----c
Confidence            999998888653 343332222111   1111111   1111 1112110  00 0         0000 0   0    0


Q ss_pred             HHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhH
Q 010361          386 IKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (512)
Q Consensus       386 i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ra  464 (512)
                      .+..|     +|.++......+++......+...++.|+++ .|+++.+.|.+.+...+++++|.++.+++.+|+|..|.
T Consensus       199 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  273 (394)
T PRK03699        199 AKEKW-----GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI  273 (394)
T ss_pred             ccccC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence            01111     2222222222223322212344567788865 69999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 010361          465 GAAGLI  470 (512)
Q Consensus       465 gl~~l~  470 (512)
                      ......
T Consensus       274 l~~~~~  279 (394)
T PRK03699        274 LTVLAG  279 (394)
T ss_pred             HHHHHH
Confidence            665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.03  E-value=4.4e-07  Score=96.40  Aligned_cols=274  Identities=16%  Similarity=0.084  Sum_probs=168.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAI---ALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~---~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      .+.--..-.++.|+=.+.||...=++   +.-++ |.-.+|..-....+-..+.+|+...+.||+|||+++...-.+=.+
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~   90 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV   90 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            33344566788888889998765433   22234 777777777788888899999999999999999998887643222


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHH-HHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFV-LVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v-~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                          +-.+..++       .+  ...+.+. ++.--+...+..++..++.  +    +++++   +-.+|=+.+-.--.+
T Consensus        91 ----~n~l~alA-------p~--f~~Ll~aR~~~g~a~G~f~~i~~~~a~--~----lvpp~---~~~~Aiaiv~~G~tl  148 (394)
T COG2814          91 ----SNLLSALA-------PS--FAVLLLARALAGLAHGVFWSIAAALAA--R----LVPPG---KRGRALALVFTGLTL  148 (394)
T ss_pred             ----HHHHHHHh-------cc--HHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HcCcc---chhhHHHHHHHHHHH
Confidence                11111111       11  1111111 1111223345555554443  2    78774   789999999999999


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      +.++|.++|.++=+.+|..........   ..+...+   .....+  |    +++.+        ++.+.      +..
T Consensus       149 A~v~GvPLGt~ig~~~GWR~~F~~ia~---l~ll~~~---~~~~~l--P----~~~~~--------~~~~~------~~~  202 (394)
T COG2814         149 ATVLGVPLGTFLGQLFGWRATFLAIAV---LALLALL---LLWKLL--P----PSEIS--------GSLPG------PLR  202 (394)
T ss_pred             HHHHhccHHHHHHHHhhHHHHHHHHHH---HHHHHHH---HHHHhC--C----CccCC--------CCCCc------chh
Confidence            999999999999888875443322222   2222222   222222  2    01000        00001      111


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~  462 (512)
                      ++     --.+|||-++..+...++.++---..-+..-+|+.+ .|+++..++++.-+.++++++|+++.+++.+| +..
T Consensus       203 ~~-----~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~  276 (394)
T COG2814         203 TL-----LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR  276 (394)
T ss_pred             HH-----HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence            11     124677766666665555543200111233445555 79999999999999999999999999999999 999


Q ss_pred             hHHHHHHHHHHHHH
Q 010361          463 KAGAAGLIFQASLL  476 (512)
Q Consensus       463 ragl~~l~~Q~~~L  476 (512)
                      ++.......+..++
T Consensus       277 ~~l~~~~~l~a~~~  290 (394)
T COG2814         277 RALIAALLLLALAL  290 (394)
T ss_pred             hHHHHHHHHHHHHH
Confidence            98887766555544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.01  E-value=8.5e-07  Score=94.37  Aligned_cols=283  Identities=12%  Similarity=0.017  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          151 ALYACCLAGNLVEQL----WNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       151 ~L~~g~~lS~~Gdri----~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      ..+.+.++......+    +.+..|.+. + .+ |..+.+....+..+...+..++.|.+.||++||+++..+.++..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~  104 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLV-E-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHH-H-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence            344455554444444    345566544 3 36 8889999999999999999999999999999999888776543321


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                          ..+  ... ......+  ...+++..++.|.............+. +|    .+++   +..++++.......++.
T Consensus       105 ----~~~--~~~-~~~~~~~--~~~l~~~~~l~g~~~g~~~~~~~~~i~-~~----~~~~---~rg~~~~~~~~~~~~g~  167 (438)
T TIGR00712       105 ----MLL--MGF-VPWATSS--IAIMFVLLFLNGWFQGMGWPPCGRTMV-HW----WSQS---ERGTIVSIWNCAHNIGG  167 (438)
T ss_pred             ----HHH--Hhc-cccccch--HHHHHHHHHHHHHHhhcchHHHHHHHH-Hh----cCcc---cchhHHHHHHHHHHhHh
Confidence                111  110 0000011  112233333445444443332222222 33    3332   67889999888888888


Q ss_pred             HHhHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cccccCCCCCCCCCCCCcchhHHhH
Q 010361          306 IAGASLFGILLSK-YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAK-CSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       306 ilGP~lgGlL~s~-~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      .++|.+.+.+... .+-.....+...   .++...++..+.++    +.++..+ ++.+..+++.+++..+.. ..+  +
T Consensus       168 ~~~~~l~~~~~~~~~~w~~~f~~~~~---~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~  237 (438)
T TIGR00712       168 GIPPLLVLLGMAWFNDWHAALYFPAI---CAIIVALFAFAMMR----DTPQSCGLPPIEEYRNDYPDDYNEKA-EQE--L  237 (438)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHhcc----CCHHhcCCCCchhccccccccccccc-ccc--c
Confidence            8888887765542 222222211111   11111111111111    1011000 000000000000000000 000  0


Q ss_pred             HHHHHh-HhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 010361          384 EAIKLG-WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (512)
Q Consensus       384 ~~i~eG-~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~  461 (512)
                       +.++- ++..+++|.++......++++.....+....+.|+++ .|+++...|+.....++++++|.++.+++.+|++.
T Consensus       238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~  316 (438)
T TIGR00712       238 -TAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFK  316 (438)
T ss_pred             -chHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             11222 2346788877665444333322212344566778876 69999999999999999999999999999999965


Q ss_pred             hh
Q 010361          462 LK  463 (512)
Q Consensus       462 ~r  463 (512)
                      .|
T Consensus       317 ~~  318 (438)
T TIGR00712       317 GN  318 (438)
T ss_pred             Cc
Confidence            44

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.99  E-value=8.3e-07  Score=94.40  Aligned_cols=152  Identities=9%  Similarity=-0.032  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~l  228 (512)
                      +..+...-++--+.+.+....+|.+.....-|..+.+.......+..++.++++|.+.||++||+++....++..+.   
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g---   81 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG---   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH---
Confidence            33444445555555666666667664433339999999999999999999999999999999999998887654332   


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilG  308 (512)
                       +.+.......    .+  .+.+++..++.|+...+..+..+..+.     .+.++   ++-.+..+..+....+...+|
T Consensus        82 -~~l~~~~~~~----~~--~~~~l~~~~l~G~g~g~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~lG~~~g  146 (410)
T TIGR00885        82 -AFLFWPAAEI----MN--YTLFLVGLFILTAGLGFLETAANPYIL-----VMGPE---STATRRLNLAQSFNPFGSIIG  146 (410)
T ss_pred             -HHHHHHHHhh----cc--HHHHHHHHHHHHhhHHHHHhhhhHHHH-----HHCCH---hHHHHHHHHHHHHHHHHHHHH
Confidence             1111111000    11  122333444555555555444333322     23443   256777888888899999999


Q ss_pred             HHHHHHHHhh
Q 010361          309 ASLFGILLSK  318 (512)
Q Consensus       309 P~lgGlL~s~  318 (512)
                      |.+++.++..
T Consensus       147 ~~i~~~l~~~  156 (410)
T TIGR00885       147 MVVAQQLILS  156 (410)
T ss_pred             HHHHHHHHhc
Confidence            9999998753

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.96  E-value=2.6e-07  Score=97.02  Aligned_cols=251  Identities=12%  Similarity=-0.008  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 010361          166 WNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSS  245 (512)
Q Consensus       166 ~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~  245 (512)
                      ...++|.+..+..-|..+++.......+...+.+++.|.+.||++||+++..+-++-.+.      .+...+ .    ++
T Consensus        28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~------~~~~~~-a----~~   96 (393)
T PRK09705         28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG------ALMREL-Y----PQ   96 (393)
T ss_pred             cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH------HHHHHH-C----cc
Confidence            345566665544338888898888889999999999999999999999999887654332      111111 1    11


Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-chhhH
Q 010361          246 MLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY-EPVTC  324 (512)
Q Consensus       246 ~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~-s~~~~  324 (512)
                        .+.+++.-++.|.......+.....+ ++|.|    +    +..++++...........+||.+++.+.... +....
T Consensus        97 --~~~ll~~r~l~Gig~~~~~~~~~~~~-~~~~~----~----~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~  165 (393)
T PRK09705         97 --SALLLSSALLGGVGIGIIQAVMPSVI-KRRFQ----Q----RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT  165 (393)
T ss_pred             --hHHHHHHHHHHHhHHHHHhhhhhHHH-HHHcc----c----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence              22334444455555555544433322 34422    2    4578888887777777888888888877654 22221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhH-HH
Q 010361          325 LKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPA-SL  403 (512)
Q Consensus       325 i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~a-sl  403 (512)
                      ..+...   ..+ ..++  .. .....+   ++++++          +++.     ..        +..+++|..+. .+
T Consensus       166 ~~~~~~---~~~-~~~~--~~-~~~~~~---~~~~~~----------~~~~-----~~--------~~~l~~~~~~~l~~  212 (393)
T PRK09705        166 LAWWAL---PAV-VALF--AW-WWQSAR---EVASSH----------KTTT-----TP--------VRVVFTPRAWTLGV  212 (393)
T ss_pred             HHHHHH---HHH-HHHH--HH-HHHhcC---CCcccc----------CCCc-----CC--------cccccCHhHHHHHH
Confidence            111111   111 1111  11 111111   011000          0000     00        11123333222 22


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 010361          404 AYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQ  472 (512)
Q Consensus       404 a~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q  472 (512)
                      ...+.++.. ..+...+..|+.++|+++...|...+..++++++|.++.+++.+|+|..+....+...+
T Consensus       213 ~~~~~~~~~-~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        213 YFGLINGGY-ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            222222221 22334566777788999999999999999999999999999999999888776665433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.96  E-value=8.9e-07  Score=90.03  Aligned_cols=54  Identities=19%  Similarity=0.030  Sum_probs=44.8

Q ss_pred             hhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 010361          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (512)
Q Consensus       416 ~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l  469 (512)
                      ....++.|.+ +.|+++...|...+...++++++..+.+++.+|+|..+......
T Consensus       238 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~  292 (394)
T TIGR00883       238 ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFT  292 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            3445677775 47999999999999999999999999999999999888655433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.93  E-value=6.3e-07  Score=95.08  Aligned_cols=271  Identities=14%  Similarity=0.060  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeec----ccCChh-HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010361          168 FAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMD----HSPRIP-AYICLNTVQAAAQLLSAAMIIHAHTVIP  241 (512)
Q Consensus       168 FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvD----R~~Rr~-vmi~~dlvq~~~v~ls~~li~~~~~~~~  241 (512)
                      .-++-|..+..+ ++..+|+..++..+--.+..|+.|.++|    |++||| -|...-+.-    .++..+ .+  ...+
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~----~~~~~l-lf--~~~p   94 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILL----ALSFFL-LF--SPPP   94 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHH----HHHHHH-hh--cccc
Confidence            344555566667 8888888888888888999999999999    777665 333333221    122222 12  1111


Q ss_pred             -cCCCchhHHH-HHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 010361          242 -TSSSMLLHPW-FFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY  319 (512)
Q Consensus       242 -~~~~~l~~~l-~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~  319 (512)
                       ..+......+ ++..++..    ++....++.. +.+.|.+.++.  ++-++.++.-+....++.++...+.+.++..+
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~----~~~t~~~i~~-~al~~~lt~~~--~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~  167 (428)
T PF13347_consen   95 AGLSFTAKLVWLFVFYILFD----IAYTFVQIPY-NALIPELTPDP--DERTRLSSWRMIFSMIGSLLASFLAPILVSWF  167 (428)
T ss_pred             chhhhhhHHHHHHHHHHHHH----HhhhhccCch-hhcCccccccH--hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence             1111111112 22222233    3333334443 24667787653  47788888888877777777778888877766


Q ss_pred             chhh----HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhc
Q 010361          320 EPVT----CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQ  395 (512)
Q Consensus       320 s~~~----~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~  395 (512)
                      +...    .........+......+   .....+  +|  ++++ .           ++.     .....+++.++..++
T Consensus       168 g~~~~~~~~~~~~~v~~iv~~v~~~---i~~~~~--ke--~~~~-~-----------~~~-----~~~~~~~~~~~~~~~  223 (428)
T PF13347_consen  168 GGGDTSNGYRWMALVLAIVGLVFFL---ITFFFV--KE--RSVE-V-----------TEQ-----EKKISLRDSLRSLFR  223 (428)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHhh---hhhhee--ee--cccc-c-----------ccc-----ccccccccchhhhcc
Confidence            5321    11221211122111111   111211  11  0000 0           000     011134667788889


Q ss_pred             CcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 010361          396 QPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS  474 (512)
Q Consensus       396 qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~  474 (512)
                      ||-++..+...+++........+....|.+. .|.+ ...+.+.....++++++..+.+++.||+|..|+...+......
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAAL  302 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHH
Confidence            9988776555544433212234455666665 5655 7889999999999999999999999999999998888776555


Q ss_pred             HHH
Q 010361          475 LLA  477 (512)
Q Consensus       475 ~L~  477 (512)
                      +..
T Consensus       303 ~~~  305 (428)
T PF13347_consen  303 GFL  305 (428)
T ss_pred             HHH
Confidence            443

>PRK09848 glucuronide transporter; Provisional

Probab=98.92  E-value=1.4e-06  Score=92.86  Aligned_cols=277  Identities=10%  Similarity=-0.001  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc----CChh-HHHHHHHHHHHHHH
Q 010361          154 ACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS----PRIP-AYICLNTVQAAAQL  227 (512)
Q Consensus       154 ~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~----~Rr~-vmi~~dlvq~~~v~  227 (512)
                      .|++..+++..+...=++.|..+..+ +...+|.......+-..+..|++|.++||.    +||| .+....+.-.    
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~----   90 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLM----   90 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHH----
Confidence            56666666666554445567788878 999999999999999999999999999996    4444 4344433211    


Q ss_pred             HHHHHHHHHHhhcccC-CCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH-----H
Q 010361          228 LSAAMIIHAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI-----D  301 (512)
Q Consensus       228 ls~~li~~~~~~~~~~-~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I-----d  301 (512)
                      +...+ .+.  ..... ........++..++.++...++.+.+..     +.+.+..+.  ++..+.++.-...     .
T Consensus        91 ~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-----l~~~~~~~~--~~r~~~~~~r~~~~~~~~~  160 (448)
T PRK09848         91 IFSVL-VFW--VPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGS-----LATAMTQQP--QSRARLGAARGIAASLTFV  160 (448)
T ss_pred             HHHHH-HHh--CcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhh-----hhhhhcCCH--HHHHHHHHHHHHHHHHHHH
Confidence            11111 121  11111 1111111222334455555565555443     222344432  3445554432211     2


Q ss_pred             HHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHH
Q 010361          302 LLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV  381 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (512)
                      .++-.++|.+++..-+.. ............+..+   +...++....  +|.  .++            +.+ +   . 
T Consensus       161 ~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~~---~~~~~~~~~~--~e~--~~~------------~~~-~---~-  215 (448)
T PRK09848        161 CLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAGM---VLYFICFKST--REN--VVR------------IVA-Q---P-  215 (448)
T ss_pred             HHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHH---HHHHHHHcCc--Eec--cCC------------Ccc-C---C-
Confidence            234456666665321100 0000111111111111   1111111111  110  000            000 0   1 


Q ss_pred             hHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       382 ~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                         .+++.++..+++|.++......++++.....+....+.|.++ .|.++..-+++...+.++.++++.+.+++.+|+|
T Consensus       216 ---~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g  292 (448)
T PRK09848        216 ---SLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIG  292 (448)
T ss_pred             ---CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               235567778899988776555544443322333444445554 6776665555555567888899999999999999


Q ss_pred             hhhHHHHHHHHH
Q 010361          461 ILKAGAAGLIFQ  472 (512)
Q Consensus       461 ~~ragl~~l~~Q  472 (512)
                      ..+...++....
T Consensus       293 ~~~~~~~g~~~~  304 (448)
T PRK09848        293 KKNTFLIGALLG  304 (448)
T ss_pred             cHHHHHHHHHHH
Confidence            998887776543

>PRK09669 putative symporter YagG; Provisional

Probab=98.90  E-value=2.8e-06  Score=90.55  Aligned_cols=276  Identities=11%  Similarity=0.040  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccC----C-hhHHHHHHHHHHH
Q 010361          155 CCLAGNLVEQLW----NFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSP----R-IPAYICLNTVQAA  224 (512)
Q Consensus       155 g~~lS~~Gdri~----~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~----R-r~vmi~~dlvq~~  224 (512)
                      ++.+..+|..+.    ..-++.|..+..+ ++..+|..-.+..+--.+..|..|.++||.+    | |+.|...-+.-. 
T Consensus        13 ~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~-   91 (444)
T PRK09669         13 GYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFG-   91 (444)
T ss_pred             hhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHH-
Confidence            344444444433    3335566667778 9999999999999999999999999999954    4 455554433221 


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHH-HHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~-v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                         ++..+ .+  ..+. .+......++. ..++.+.+..+.++.+.     .+.+.+..+.  ++.++.++.-...-.+
T Consensus        92 ---i~~~l-~f--~~p~-~~~~~~~~~~~~~~~l~~~~~t~~~ip~~-----al~~~~t~~~--~eR~~l~~~r~~~~~~  157 (444)
T PRK09669         92 ---VVCLL-TF--YTPD-FGATGKIIYACVTYILLSLVYTAINVPYC-----AMPGAITNDP--RERHSLQSWRFALSFI  157 (444)
T ss_pred             ---HHHHH-HH--hCCC-CCcchHHHHHHHHHHHHHHHHHhhcchHH-----HhHHHhcCCH--HHHHHHHHHHHHHHHH
Confidence               12212 12  1221 11111112222 22344444444444443     2344455432  4677888887777777


Q ss_pred             HHHHhHHHHHHHHhhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhH
Q 010361          304 CEIAGASLFGILLSKYEP---VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVD  380 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~---~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (512)
                      ..++++.++..+...++.   ..+......+.  .+...+....+....  +|  +.+++            ++.+   .
T Consensus       158 G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~--~ii~~v~~~~~~~~~--~e--~~~~~------------~~~~---~  216 (444)
T PRK09669        158 GGLIVSVIALPLVDILGKGDEQKGYFYAMMVM--GLLGVVLFFCCFFMT--KE--RYTPE------------VDNS---S  216 (444)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH--HHHHHHHHHHHhCCe--EE--ecCCC------------CcCC---C
Confidence            788888777666665432   11111111111  111111111111111  11  10000            0000   1


Q ss_pred             HhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          381 VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       381 ~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                          ..+++++..+++|-++..+...+++........+....|.+. .+ ++...+.+...+.+.+++|..+.+++.+|+
T Consensus       217 ----~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~  291 (444)
T PRK09669        217 ----SVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF  291 (444)
T ss_pred             ----CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                135667778899988776555444432212233344444443 33 344566677788899999999999999999


Q ss_pred             ChhhHHHHHHHH
Q 010361          460 GILKAGAAGLIF  471 (512)
Q Consensus       460 G~~ragl~~l~~  471 (512)
                      |..++..++...
T Consensus       292 gk~~~~~~~~~~  303 (444)
T PRK09669        292 DRVRAFKWTIVA  303 (444)
T ss_pred             ChHHHHHHHHHH
Confidence            998887766543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.89  E-value=5.8e-07  Score=95.17  Aligned_cols=284  Identities=13%  Similarity=0.045  Sum_probs=154.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       148 ~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      -+..++++.++..+......++.|.+ ..-++ |...++....+..+...+.+++.|.+.||++||+++..+.++-.+. 
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~-   86 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTM-GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA-   86 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhh-HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH-
Confidence            45567777777777777777888844 44445 8999999999999999999999999999999999987776543221 


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                         ..+  ..+.     .+  ...+++.-++.|..+....+.....+ .+|.|    +   ++..++++.....-.++.+
T Consensus        87 ---~~~--~~~~-----~~--~~~l~~~r~l~G~~~~~~~~~~~~~~-~~~~~----~---~~rg~~~~~~~~~~~~g~~  146 (412)
T TIGR02332        87 ---STA--TMFA-----TG--PESLYLLRILVGIAEAGFLPGILLYL-TFWFP----A---YFRARANALFMIAMPVTMA  146 (412)
T ss_pred             ---HHH--HHHh-----cC--HHHHHHHHHHHHHHHhhHHHHHHHHH-HHHcC----H---HHHHHHHHHHHHHHHHHHH
Confidence               111  1111     11  12234444455655555444433222 34433    2   2678889999888888999


Q ss_pred             HhHHHHHHHHhh------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-----ccccc----CCCCCCCC
Q 010361          307 AGASLFGILLSK------YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAK-----CSQSC----CRTSNEGP  371 (512)
Q Consensus       307 lGP~lgGlL~s~------~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~-----~~~~~----~~~~~~~~  371 (512)
                      +||+++|.+...      .+......+..   +..+....+. +  ..+ ++.++..+     +.+..    .++..+.+
T Consensus       147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~---~~~l~~~~~~-~--~~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  219 (412)
T TIGR02332       147 LGLILSGYILALDGLMALKGWQWLFLLEG---FPSVILGVMT-W--FWL-DDSPDKAKWLDEEDKKALKEMIDNDQLTLE  219 (412)
T ss_pred             HHHHHHHHHHhCCCCCCccchhHHHHHHH---HHHHHHHHHH-h--hcc-CCCcccCCCCCHHHHHHHHHHHHhcccccc
Confidence            999999988742      23222222211   1111111111 1  111 11010000     00000    00000000


Q ss_pred             CCCCcchhHHhHHHHHHhHhhhhcCcchhHH-HHHHHHHHHhhhhhhHHHHHHHHHh--CCCcchhHHHHHHHHHHHHHH
Q 010361          372 VPDADNIVDVGIEAIKLGWKEYMQQPVLPAS-LAYVLLCLNVVLTPGSLMTAFLTQR--GLNPSIIGGFSGLCASMGVAA  448 (512)
Q Consensus       372 ~~~~~~~~~~~~~~i~eG~~~y~~qpvl~as-la~alL~~tvll~~~~l~v~yl~~l--Gls~~~iG~~~g~gavgGLlG  448 (512)
                      .++.. ..+. ....+.-|+..++ |.++.. +.+.+.+... ..+...++.|+.+.  |+++...|.+.+...+++++|
T Consensus       220 ~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g  295 (412)
T TIGR02332       220 QPEGA-FAHA-AMPQRSMLREIFT-PAIMLYTLAYFCLTNTL-SAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFG  295 (412)
T ss_pred             ccccc-cccc-cccHHHHHHHhcC-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHH
Confidence            00000 0000 0001122333333 333222 2222111111 22334566777763  678889999999999999999


Q ss_pred             HHHHHHHHHhhChhhH
Q 010361          449 TFLSAYLVRRLGILKA  464 (512)
Q Consensus       449 t~lap~L~rRlG~~ra  464 (512)
                      .++.+++.+|++..+.
T Consensus       296 ~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       296 MIWWSRHSDRLKERKH  311 (412)
T ss_pred             HHHHHHHhcccCccHH
Confidence            9999999999986653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.84  E-value=1.4e-06  Score=92.64  Aligned_cols=266  Identities=15%  Similarity=0.044  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010361          163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYICLNTVQAAAQLLSAAMIIHAHTVI  240 (512)
Q Consensus       163 dri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~  240 (512)
                      -.+|.-=++.++....+ |..++|++..+..+..++++++.|.+.||+ +||+++..+.++..+      ...... .. 
T Consensus        18 ~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~------~~~~~~-~~-   89 (418)
T TIGR00889        18 WGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGAL------LLFFAA-QV-   89 (418)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH------HHHHHH-Hh-
Confidence            33444444555555567 999999999999999999999999999998 557777766543211      111111 11 


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 010361          241 PTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       241 ~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s  320 (512)
                         .+  .+.+++..++.++.........+ ++..+|+.... .    +..+.-.+.|..-.++-.+||.++|.+ +..+
T Consensus        90 ---~~--~~~~~~~~~l~~~~~~~~~~~~~-~l~~~~~~~~g-~----~~~~~~~~~r~~G~lG~~ig~~l~g~l-~~~~  157 (418)
T TIGR00889        90 ---TT--PAGMFPVLLANSLAYMPTIALTN-SISYANLPQAG-L----DVVTDFPPIRVMGTIGFIAAMWAVSLL-DIEL  157 (418)
T ss_pred             ---cC--HHHHHHHHHHHHHHHccHHHHHH-HHHHHHHhhcC-C----CchhcCCCeeeehhHHHHHHHHHHHHh-cccc
Confidence               11  12334333333332211111111 01111111000 0    011111122333346788899988877 3221


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchh
Q 010361          321 PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLP  400 (512)
Q Consensus       321 ~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~  400 (512)
                      .........   ...+. .+   .+...+  ++.++++  +          +++.     +..+..+.+++..+|+|.+.
T Consensus       158 ~~~~f~~~~---~~~~~-~~---~~~~~~--~e~~~~~--~----------~~~~-----~~~~~~~~~~~~~~k~~~~~  211 (418)
T TIGR00889       158 SNIQLYITA---GSSAL-LG---VFALTL--PDIPVAK--S----------TAKM-----SIKVMLGLDAFILFKNKRMA  211 (418)
T ss_pred             hhHHHHHHH---HHHHH-HH---HHHhcC--CCCCCCc--c----------cccc-----CHHHHhhhhHHHHhcCCCee
Confidence            111111111   11111 11   111122  2111000  0          0000     01112233455678888765


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhCCCc--------chhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 010361          401 ASLAYVLLCLNVVLTPGSLMTAFLTQRGLNP--------SIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQ  472 (512)
Q Consensus       401 asla~alL~~tvll~~~~l~v~yl~~lGls~--------~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q  472 (512)
                      ..+...++..............|+.+.|.++        ..+|.+.++..++++.+.+..+++.+|+|..+....+....
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~  291 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAW  291 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            5444333322211122234456666666554        67899999999999999999999999999998877776644


Q ss_pred             HH
Q 010361          473 AS  474 (512)
Q Consensus       473 ~~  474 (512)
                      .+
T Consensus       292 ~v  293 (418)
T TIGR00889       292 AL  293 (418)
T ss_pred             HH
Confidence            43

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.83  E-value=1.9e-06  Score=92.15  Aligned_cols=248  Identities=12%  Similarity=-0.065  Sum_probs=136.9

Q ss_pred             ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHH
Q 010361          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAG  259 (512)
Q Consensus       180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg  259 (512)
                      +....|....+..+..++.++++|.+.||++||+++..+.++-.+.    ..+..+...     .+  ...+++.-++.|
T Consensus        74 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~----~~~~~~~~~-----~~--~~~l~~~r~~~G  142 (465)
T TIGR00894        74 SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVI----SIVIPWAAG-----GG--IALVVFCRVIQG  142 (465)
T ss_pred             CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHH----HHHHHHHHH-----cC--chHHHHHHHHHH
Confidence            4555666666777888999999999999999999988877543221    111111100     11  122334444556


Q ss_pred             HHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-chhhHHHHHHHHHHHHHHH
Q 010361          260 AVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY-EPVTCLKFAAGLIMWSLPV  338 (512)
Q Consensus       260 ~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~-s~~~~i~~~~~~~~~s~~s  338 (512)
                      ..+....++...     |++...++   ++..++++.......++.++||.++|.+.... +......+..+   +.+..
T Consensus       143 ~~~~~~~~~~~~-----~~~~~~~~---~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~---~~~~~  211 (465)
T TIGR00894       143 LAQGSVSPATHK-----IIVKWAPP---KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGI---VGCAW  211 (465)
T ss_pred             HhcccchhhHHH-----HHHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhH---HHHHH
Confidence            655555544433     23334443   37899999999999999999999999998763 54332222111   11111


Q ss_pred             HHHHHHHHHhhcccccccccccccc--CCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhh
Q 010361          339 MIILTWFTNKISSGVLDRAKCSQSC--CRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTP  416 (512)
Q Consensus       339 ~~ll~~~i~rv~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~  416 (512)
                      .+ ..+...+ ..|+.++..++++.  .+++.++.+.+.         +.+..|+..+++|.+.......+.++.....+
T Consensus       212 ~~-~~~~~~~-~~p~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (465)
T TIGR00894       212 SL-LWFVFPA-DDPSIHPCISKFEKKYINSSLQGQKGST---------RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTIL  280 (465)
T ss_pred             HH-HHHHHhc-CCcccCCCCCHHHHHHHHhhcccccCCC---------CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            11 1111110 01110000000000  000000000000         00123666778876655433332222221233


Q ss_pred             hHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          417 GSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       417 ~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                      ...++.|+++ .|++....|++.++..+++++|.++.+++.+|++
T Consensus       281 ~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~  325 (465)
T TIGR00894       281 PTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLK  325 (465)
T ss_pred             HHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778775 7999999999999999999999999999988765

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.83  E-value=5e-06  Score=90.04  Aligned_cols=291  Identities=12%  Similarity=-0.006  Sum_probs=142.7

Q ss_pred             cCCCCChhhhhhhccCCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccc
Q 010361          127 TIPVLSEEEQNALAATPAHP---EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLV  202 (512)
Q Consensus       127 ~~~~l~~~~~~~~~~~~~~~---r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~a  202 (512)
                      ++|+...+.+.+.+.-+..+   +.+...|...++..++...+....|.+.. -++ |....+.......+..++..++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~gls~~~~g~~~~~~~~~~~~~~~~~   91 (476)
T PLN00028         13 ALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRD-NLNLTKSDIGNAGIASVSGSIFSRLAM   91 (476)
T ss_pred             CCCcCcccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45554444444444333332   33444555566666655555555554543 345 77788877777777778888999


Q ss_pred             eeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEec
Q 010361          203 GKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLA  282 (512)
Q Consensus       203 G~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv  282 (512)
                      |.+.||++||+++..+-++-.+      ..+...+.     .+  ...+++.-++.|..+.......  .+-.+|.|   
T Consensus        92 G~l~dr~G~r~~~~~~~~~~~~------~~~~~~~~-----~s--~~~l~~~r~l~G~~~~~~~~~~--~~i~~~~~---  153 (476)
T PLN00028         92 GPVCDLYGPRYGSAFLLMLTAP------AVFCMSLV-----SS--ATGFIAVRFFIGFSLATFVSCQ--YWMSTMFN---  153 (476)
T ss_pred             HHHHHHhCChHHHHHHHHHHHH------HHHHHHHh-----cC--HHHHHHHHHHHHHHHHhhHHHH--HHHHHhcC---
Confidence            9999999999988776543221      11111111     11  1223333334454433222211  11124433   


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010361          283 GINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY---------EPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV  353 (512)
Q Consensus       283 ~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~---------s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~  353 (512)
                       ++   +...+++.....-.++..+||.+.+.+....         +-.....+..   +..++..++    ...+. +.
T Consensus       154 -~~---~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g---~l~l~~~l~----~~~~~-~~  221 (476)
T PLN00028        154 -GK---IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG---LLHIIMGIL----VLTLG-QD  221 (476)
T ss_pred             -hh---heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH---HHHHHHHHH----HHHHc-Cc
Confidence             22   5667777776655556566655555443321         1111111111   111111111    11111 10


Q ss_pred             ccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHH-HHHHHHHHHhhhhhhHHHHHHHHH-hCCCc
Q 010361          354 LDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPAS-LAYVLLCLNVVLTPGSLMTAFLTQ-RGLNP  431 (512)
Q Consensus       354 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~as-la~alL~~tvll~~~~l~v~yl~~-lGls~  431 (512)
                      .  ++. +  .++.+++.+.+ +   .+    ..+.++..++++.++.. +.+...+... ..+.+.++.|+.+ .|+++
T Consensus       222 ~--p~~-~--~~~~~~~~~~~-~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~~~~g~s~  287 (476)
T PLN00028        222 L--PDG-N--YRELKKSGTMP-K---DS----FSKVLRYGVTNYRTWILALTYGYSFGVE-LTMDNIIAEYFYDRFGLSL  287 (476)
T ss_pred             C--CCC-c--hhhHHhcCccc-c---cc----HHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHhHHHHHHHHhcCCCH
Confidence            0  000 0  00000000000 0   01    11234444556544332 2222222211 2233456677765 69999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhChh
Q 010361          432 SIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (512)
Q Consensus       432 ~~iG~~~g~gavgGLlGt~lap~L~rRlG~~  462 (512)
                      ...|.+.+..++++++|.++.+++..|+|..
T Consensus       288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        288 ETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999998888753

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.81  E-value=6.1e-06  Score=89.57  Aligned_cols=273  Identities=15%  Similarity=0.067  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChh------HHHHHHHHHHHHHHHHHHHHHHH
Q 010361          164 QLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIP------AYICLNTVQAAAQLLSAAMIIHA  236 (512)
Q Consensus       164 ri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~------vmi~~dlvq~~~v~ls~~li~~~  236 (512)
                      .+-..=+.-|-.+..+ ++..+|..-++..+-=.+.-|..|.++||.++|.      ++..+.-.     .+.+.+ .| 
T Consensus        29 ~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~-----~i~~~l-~F-  101 (467)
T COG2211          29 GIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF-----AIVAVL-LF-  101 (467)
T ss_pred             HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH-----HHHHHH-HH-
Confidence            3333334444455566 8888888877778878999999999999876543      22222211     122222 12 


Q ss_pred             HhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010361          237 HTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILL  316 (512)
Q Consensus       237 ~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~  316 (512)
                       ..++.+.+.-....++.-++++..-++    .++-++ .+.|++..+  +++-++.|++=+....++.++--.+.+.+.
T Consensus       102 -~~p~~~~~~k~~ya~vtY~l~~l~YT~----vniPy~-al~~~iT~d--~~ER~~l~s~R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211         102 -ITPDFSMTGKLIYALVTYMLLGLGYTL----VNIPYG-ALGPEITQD--PQERASLTSWRMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             -cCCCcccCcchHHHHHHHHHHHHHHHh----eeCchh-hcchhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111111111111123333344433233    334444 367778765  468899999888877777777666677777


Q ss_pred             hhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhc
Q 010361          317 SKYEPVT-CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQ  395 (512)
Q Consensus       317 s~~s~~~-~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~  395 (512)
                      +.++... ...+-...-.+.+...+..+++...++.+..    +.+           +..    .....+.++.+...++
T Consensus       174 ~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~----~~~-----------~~~----~~~~~~~~~~~~~~~~  234 (467)
T COG2211         174 KLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV----ETQ-----------PTK----TGVKLKLKDSFLLIFK  234 (467)
T ss_pred             HHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC----ccc-----------cCc----ccccccHHHHHHHHHc
Confidence            7665432 1112122223333333344455555432211    000           000    0011234555666778


Q ss_pred             CcchhHHHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361          396 QPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       396 qpvl~asla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~  470 (512)
                      ++-++..+...++++...--.+++++.|.+ .+|.++...+........+.++|..+.|++.||+|..++..++..
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~  310 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL  310 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence            876666554444444331224567777776 489999999999999999999999999999999999999888743

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.81  E-value=5.5e-06  Score=87.02  Aligned_cols=241  Identities=10%  Similarity=-0.097  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010361          159 GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHT  238 (512)
Q Consensus       159 S~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~  238 (512)
                      ++-+-..+.+.+|.+..+..-|..+.+....+..+.+.+..++.|.+.||++||+++..+-+.-     +. ..+...  
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~-----~~-~~~~~~--   74 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATF-----AA-AAGRLL--   74 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH-----HH-HHHHHH--
Confidence            4445556677788877665448888899888889999999999999999999998766543221     11 111111  


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 010361          239 VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK  318 (512)
Q Consensus       239 ~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~  318 (512)
                      ..   .+  ...+++.-++.|..+...-+.... + .+|.|    +   ++..++++.+.....+..++||.+++.+...
T Consensus        75 ~~---~~--~~~l~~~R~l~G~g~~~~~~~~~~-~-~~~~~----~---~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~  140 (368)
T TIGR00903        75 DP---FN--YEWLLACQLLAALGQPFLLNAFAP-A-ASQIR----E---ERRDLVISLLSFAMYLGIIFALAAGLKIYTA  140 (368)
T ss_pred             Hh---cc--HHHHHHHHHHHHhHhHHHHHHHHH-H-HHHcC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            10   11  122333333445444433323322 2 35543    2   3788999999999999999999999999876


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcc
Q 010361          319 YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPV  398 (512)
Q Consensus       319 ~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpv  398 (512)
                      .+-.....+..   +..++..+   .....+  |+.  ++...            +..+ .    ++..+.++..++||.
T Consensus       141 ~gWr~~f~~~~---~l~~~~~~---~~~~~l--p~~--p~~~~------------~~~~-~----~~~~~~~~~ll~~~~  193 (368)
T TIGR00903       141 GGLQLLIIPIA---AVAAAGII---LVLAAL--PAL--PFQAA------------EGFG-F----KDAVKEFGALAGRKD  193 (368)
T ss_pred             cchHHHHHHHH---HHHHHHHH---HHHHHc--CCC--CCCCC------------CCcc-h----HHHHHHHHHHHcChh
Confidence            66443222211   11111111   111222  211  11000            0000 0    111235677888987


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH
Q 010361          399 LPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAAT  449 (512)
Q Consensus       399 l~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt  449 (512)
                      +.......++++.....+.+-++.|+++.|++.. .|....+..++|++|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~  243 (368)
T TIGR00903       194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGV  243 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHH
Confidence            7665433333322222344567888877788865 5666666566555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.80  E-value=4.5e-06  Score=91.15  Aligned_cols=93  Identities=20%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             hHHhHHHHHHhHhhhhcCcchhH-HHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010361          379 VDVGIEAIKLGWKEYMQQPVLPA-SLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLV  456 (512)
Q Consensus       379 ~~~~~~~i~eG~~~y~~qpvl~a-sla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~  456 (512)
                      ....++++++-+|...|+|-+.. .++. ++|.-.+....++...|.+ +.|++..++..+.-+..+.++.|+++++++.
T Consensus       263 ~~~g~~~l~~t~k~~~~~~~~~~fLia~-~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~  341 (477)
T PF11700_consen  263 LRFGFKRLWRTFKEIRKLRQLFLFLIAY-FLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQ  341 (477)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888888888884433 3333 3333222345567788887 5899999999999999999999999999999


Q ss_pred             HhhChh--hHHHHHHHHH
Q 010361          457 RRLGIL--KAGAAGLIFQ  472 (512)
Q Consensus       457 rRlG~~--ragl~~l~~Q  472 (512)
                      ||+|..  ++....+.+-
T Consensus       342 ~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  342 DRFGPKTKRTLLISLILW  359 (477)
T ss_pred             HHhCCchhHHHHHHHHHH
Confidence            999999  7777666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.77  E-value=4.5e-06  Score=88.74  Aligned_cols=280  Identities=11%  Similarity=-0.003  Sum_probs=138.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH-H----HHH-HHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA-V----MGF-FSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~va-v----~~~-~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      ...++.+.++..+.-....++.|.+..+...+....+ +    ..+ ...+...+.+++.|.+.||++|||+++..-++-
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~   96 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM   96 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence            4446666666666666777788877776654332221 1    111 112223355788899999999999998876543


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchh---H-HHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLL---H-PWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN  298 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~---~-~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~  298 (512)
                      .+.   + .+..+.   .  +.....   . .+++.-++.|.......+... ++-.||.    +++   +..++++...
T Consensus        97 ~~~---~-~l~~~~---~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~----p~~---~rg~~~~~~~  159 (434)
T PRK15075         97 ASG---T-LLIAFV---P--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEIA----TPG---RKGFYTSWQS  159 (434)
T ss_pred             HHH---H-HHHHhC---C--cHHHHHHHHHHHHHHHHHHhhccccccHHHHH-HHHHhhC----Ccc---cchHHHHHHH
Confidence            221   1 111111   1  000000   0 011222233333222222222 2223443    332   6788888888


Q ss_pred             HHHHHHHHHhHHHHHHHHhhcchh----hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCC
Q 010361          299 RIDLLCEIAGASLFGILLSKYEPV----TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPD  374 (512)
Q Consensus       299 ~Idl~~kilGP~lgGlL~s~~s~~----~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~  374 (512)
                      ...+.+..+||.+++.+...+.+.    .+-...+...+...   .+ .+.+++ ..++.+  +..+       ++.+++
T Consensus       160 ~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~---~~-~~~~~~-~~~e~~--~~~~-------~~~~~~  225 (434)
T PRK15075        160 ASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV---PF-IFLIRR-SLEETE--EFLA-------RKHRPS  225 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH---HH-HHHHHH-hcCCCH--HHHH-------hhhccc
Confidence            888888899999988875433210    00111111111111   11 111111 111100  0000       000000


Q ss_pred             CcchhHHhHHHHHHhHhhhhcCc-chhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHH
Q 010361          375 ADNIVDVGIEAIKLGWKEYMQQP-VLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLS  452 (512)
Q Consensus       375 ~~~~~~~~~~~i~eG~~~y~~qp-vl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~la  452 (512)
                          .++.       ++...+++ .+...+................++.|+++ .|+++.+.+++....++++++|+.+.
T Consensus       226 ----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  294 (434)
T PRK15075        226 ----MREI-------FRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIG  294 (434)
T ss_pred             ----cccH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                0111       22222232 11111111111111101223446777776 79999999999999999999999999


Q ss_pred             HHHHHhhChhhHHHHHHH
Q 010361          453 AYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       453 p~L~rRlG~~ragl~~l~  470 (512)
                      +++.+|+|..+...++..
T Consensus       295 g~l~Dr~g~r~~~~~~~~  312 (434)
T PRK15075        295 GALSDRIGRRPVLIAFTV  312 (434)
T ss_pred             HHHHHHhcchHHHHHHHH
Confidence            999999998887665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.72  E-value=8.4e-07  Score=99.95  Aligned_cols=314  Identities=11%  Similarity=0.003  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHH
Q 010361          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI  233 (512)
Q Consensus       155 g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li  233 (512)
                      ..+.+.+.......+++-+--. ++ +....|+......+..++..+++|.+.||.+|+|.+...-++-.+.    +.+.
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~-F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg----~ll~  115 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERR-FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG----SFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhh-hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH----HHHH
Confidence            3444444445555555544332 44 6666788888888899999999999999999999887765543332    1111


Q ss_pred             HHHHhh-cc-----------------------c----------------CC--CchhHHHHHHHHHHHHHHHHHhHhhhh
Q 010361          234 IHAHTV-IP-----------------------T----------------SS--SMLLHPWFFVLVLAGAVERLTGVALGV  271 (512)
Q Consensus       234 ~~~~~~-~~-----------------------~----------------~~--~~l~~~l~~v~~llg~i~~l~sva~~i  271 (512)
                      .+.+.. ++                       .                ..  +.....+++.-++.|..+....+... 
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~-  194 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI-  194 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc-
Confidence            111100 00                       0                00  00011112223344443333333222 


Q ss_pred             hhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc-h---------------h-hHH-HHHHHHHH
Q 010361          272 AVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE-P---------------V-TCL-KFAAGLIM  333 (512)
Q Consensus       272 averdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s-~---------------~-~~i-~~~~~~~~  333 (512)
                      ++-.||+|    ++   +...+.+.+...-.+.-.+||+++|.+...+. .               . .+. +..+.+..
T Consensus       195 ~~i~d~~~----~~---~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g  267 (633)
T TIGR00805       195 SYIDDFAK----SK---NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICG  267 (633)
T ss_pred             hhhhccCC----cc---ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence            33345433    32   67788888888888888999999999886541 0               0 111 11122111


Q ss_pred             -HHHHHHHHHHHHHHhhcccccccc-c-cccccCCCCCCCC-CCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHH
Q 010361          334 -WSLPVMIILTWFTNKISSGVLDRA-K-CSQSCCRTSNEGP-VPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLC  409 (512)
Q Consensus       334 -~s~~s~~ll~~~i~rv~~~~l~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~  409 (512)
                       ..+...+.    +..+ ++.++++ + .+.+..++...+. +.+.+.......++....++.++++|.+...+....+.
T Consensus       268 ~l~~l~~v~----l~~~-p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~  342 (633)
T TIGR00805       268 GVALLTSIP----FFFF-PKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVID  342 (633)
T ss_pred             HHHHHHHHH----HHhC-ccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence             11111111    1111 1111111 0 0000000000000 00000000112345556778899999887765554444


Q ss_pred             HHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHH-HHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHHHHHHHHHhc
Q 010361          410 LNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCAS-MGVAATFLSAYLVRRLG--ILKAGAAGLIFQASLLAMAVAVYWS  485 (512)
Q Consensus       410 ~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gav-gGLlGt~lap~L~rRlG--~~ragl~~l~~Q~~~L~~~v~~f~~  485 (512)
                      +.+..++...++.|+.+ .|+++...|++.+...+ ++++|.++.+++.+|++  ..+...+++....+.+...+..|+.
T Consensus       343 ~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (633)
T TIGR00805       343 SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLI  422 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHee
Confidence            43334566678888874 79999999999998776 67899999999999998  4466666666666655554545554


Q ss_pred             C
Q 010361          486 G  486 (512)
Q Consensus       486 g  486 (512)
                      +
T Consensus       423 ~  423 (633)
T TIGR00805       423 G  423 (633)
T ss_pred             c
Confidence            4

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.71  E-value=2e-05  Score=85.67  Aligned_cols=161  Identities=10%  Similarity=-0.076  Sum_probs=111.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cC-ChhHHHHHHHHHHHHHHHccccceeeecc-cCChhHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL--HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYICLNT  220 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l--~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR-~~Rr~vmi~~dl  220 (512)
                      |++.++.++...++..++-.....-+|+|+...  .+ |...++.......+...+..+++|.+.|| ++||+++..+-+
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~   87 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI   87 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence            778899999999999999988888899998775  66 88888988888888999999999999999 899999888876


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH
Q 010361          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (512)
Q Consensus       221 vq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I  300 (512)
                      +..+.      .+...  ..   .+  .+.+++..++.+..+.++.+.....+ .||.|    ++++.+..++-+.....
T Consensus        88 ~~~~g------~~~~~--~~---~~--~~~~~~~~~l~g~g~g~~~~~~~~~~-a~~~~----~~~~~~r~~~~~~~~~~  149 (475)
T TIGR00924        88 VLMLG------HFMLA--MS---IY--PDLIFYGLGTIAVGSGLFKANPSSMV-GKLYE----RGDMPRRDGGFTLFYMS  149 (475)
T ss_pred             HHHHH------HHHHH--hc---cc--HhHHHHHHHHHHhccccccCCHHHHH-HHhcC----CCCcccccceehhHHHH
Confidence            54321      11111  11   11  11223334445555545444333222 34333    22112455677788888


Q ss_pred             HHHHHHHhHHHHHHHHhhcchhh
Q 010361          301 DLLCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       301 dl~~kilGP~lgGlL~s~~s~~~  323 (512)
                      ..++.++||.++|.+....+...
T Consensus       150 ~niG~~ig~~l~g~l~~~~g~~~  172 (475)
T TIGR00924       150 INIGSFISPLLAGVIAENYGYHV  172 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhcChHH
Confidence            88999999999999988666443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.70  E-value=2.7e-06  Score=92.26  Aligned_cols=282  Identities=12%  Similarity=0.033  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccC-----ChhHHHHHHHHHHHHHHHH
Q 010361          156 CLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSP-----RIPAYICLNTVQAAAQLLS  229 (512)
Q Consensus       156 ~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~-----Rr~vmi~~dlvq~~~v~ls  229 (512)
                      ++..-+. .+...+++-++-.-.+ |.-.++.+.....+||.+ -|+.|.++||++     ||+.|....++..      
T Consensus        35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~------  106 (468)
T TIGR00788        35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGS------  106 (468)
T ss_pred             HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHH------
Confidence            4444445 7777788888877777 999998888889999988 677999999997     7777777654321      


Q ss_pred             HHHHHHHHhhcccCCCchhHHHHH-HHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHH---HHHHHHHHH
Q 010361          230 AAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV---LNRIDLLCE  305 (512)
Q Consensus       230 ~~li~~~~~~~~~~~~~l~~~l~~-v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~---l~~Idl~~k  305 (512)
                       .+.+..+...   .+.  ..+++ ..++.+......+++.+.-+ -|    ..++ +  + ...|+.   .-+...+..
T Consensus       107 -~~~~~~l~~~---~~~--~~~~~~~~~l~~~~~a~~dv~~da~~-~e----~~~~-~--~-~~~~~~~s~~~~~~~~G~  171 (468)
T TIGR00788       107 -AILYGLLPGK---VSS--AKVAAAFIFLAALAKALYDVLVDSLY-SE----RIRE-S--P-SAGPSLVSWMWGASATGG  171 (468)
T ss_pred             -HHHHHhcccc---cch--HHHHHHHHHHHHHHHHHHHHhHHHHH-hh----hhhc-C--C-CcCCCeeeHHHHHHHHHH
Confidence             1111111111   111  12222 33444555556565554322 12    2222 1  1 222322   223344789


Q ss_pred             HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccccccccCCCCCCCCCCC-CcchhHHhH
Q 010361          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLD-RAKCSQSCCRTSNEGPVPD-ADNIVDVGI  383 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  383 (512)
                      ++|+.++|.+...++......+.++..+..    .   .....+  +|.+ ..+++..++   +...... .........
T Consensus       172 ~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~----~---~~~~~~--~E~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  239 (468)
T TIGR00788       172 LISSLLGGPLLDKTLTRILFLITAALLLLQ----L---FVSNLS--KERRAFVRPRIGTY---LEMNMALLTLGVLANVK  239 (468)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHH----H---HHHHhc--cccccccccccccc---chhhhhhhhhhHHHHHH
Confidence            999999999998777654333322211111    1   111111  2111 000000000   0000000 000000111


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHH-HHHhhhhhhHHHHHH---HHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLL-CLNVVLTPGSLMTAF---LTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL-~~tvll~~~~l~v~y---l~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                      +.+ .+.+..+++|.+...+.+.++ |...   .+.....|   ...+|+++..+|++.+.+++++++|..++.++.+|+
T Consensus       240 ~~~-~~l~~~l~~~~i~~~l~fifl~~~~~---~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~  315 (468)
T TIGR00788       240 VQI-LGLRGAIQLLEIAKPLIFIFLSYANL---PGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF  315 (468)
T ss_pred             HHH-HHHHHHHhcHHHHHHHHHHHHHHhhc---CCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            222 344445778876665555555 5432   22222211   125899999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q 010361          460 GILKAGAAGLIFQASLL  476 (512)
Q Consensus       460 G~~ragl~~l~~Q~~~L  476 (512)
                      +..++..++...+..+.
T Consensus       316 ~~r~~l~~~~~l~~~~~  332 (468)
T TIGR00788       316 PYRLLFGVTTLLYTLSS  332 (468)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999888887776644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=98.69  E-value=3.8e-05  Score=83.01  Aligned_cols=273  Identities=9%  Similarity=-0.011  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc----CChh-HHHHHHHHHHHHHHH
Q 010361          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS----PRIP-AYICLNTVQAAAQLL  228 (512)
Q Consensus       155 g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~----~Rr~-vmi~~dlvq~~~v~l  228 (512)
                      |.+..++-..+...=+..|..+..+ ++..+|..-++..+-=.+.-|.+|.++||.    +||| -+...-+.-    .+
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~----~i   92 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF----GI   92 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH----HH
Confidence            3333333333333334455556667 888888877777777789999999999985    4544 333332221    22


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHH-HHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~-v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                      ++.+ .|  ..+. .+......++. .-++....-.+.++.+.     .|.+.+.++  +++-+++++.-.....+..++
T Consensus        93 ~~~l-lf--~~p~-~s~~~~~~y~~~~~~~~~~~~t~~~ipy~-----al~~~lt~d--~~eRt~l~s~r~~~~~iG~~~  161 (460)
T PRK11462         93 VCVL-AY--STPD-LSMNGKMIYAAITYTLLTLLYTVVNIPYC-----ALGGVITND--PTQRISLQSWRFVLATAGGML  161 (460)
T ss_pred             HHHH-HH--hCCC-CCcchHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence            2222 22  1221 11111112222 22234444445444443     356667765  357889999888887877888


Q ss_pred             hHHHHHHHHhhcchh---hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHH
Q 010361          308 GASLFGILLSKYEPV---TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (512)
Q Consensus       308 GP~lgGlL~s~~s~~---~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (512)
                      +|.++..++..++-.   .+......+  ..++..+....+....  +|.  .+++            ++ +   .    
T Consensus       162 ~~~~~~plv~~~g~~~~~~g~~~~~~i--~~ii~~i~~~i~~~~~--kE~--~~~~------------~~-~---~----  215 (460)
T PRK11462        162 STVLMMPLVNLIGGDNKPLGFQGGIAV--LSVVAFMMLAFCFFTT--KER--VEAP------------PT-T---T----  215 (460)
T ss_pred             HHHHHHHHHHHhCCCchhhhHHHHHHH--HHHHHHHHHHHHHhcc--eec--cCCC------------cc-C---C----
Confidence            888877776655310   111111111  1111111111111111  111  0000            00 0   0    


Q ss_pred             HHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       385 ~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      .+++.++..++++-++..+...++++.......+.++.|.+. .| ++...+.+.+...+++++|+.+.+++.+|+|..+
T Consensus       216 ~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~  294 (460)
T PRK11462        216 SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT  294 (460)
T ss_pred             CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            135567777888887776544444332212244455555554 44 3456778888889999999999999999999876


Q ss_pred             HHHHHH
Q 010361          464 AGAAGL  469 (512)
Q Consensus       464 agl~~l  469 (512)
                      ...++.
T Consensus       295 ~~~~~~  300 (460)
T PRK11462        295 IFWWTN  300 (460)
T ss_pred             HHHHHH
Confidence            655444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.68  E-value=4.5e-05  Score=87.61  Aligned_cols=154  Identities=13%  Similarity=0.037  Sum_probs=93.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL---HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l---~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dl  220 (512)
                      +.+..+++++.-.+..+.+.+..+.+...+..+   ++ +....+.+..+..+..++.+++.|.+.||++||++++.+-+
T Consensus       161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            334566677777777777776554444333222   34 77888888888899999999999999999999999888765


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH
Q 010361          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (512)
Q Consensus       221 vq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I  300 (512)
                      +..+.   + .+..+.       .+  .+.+++.-++.|.......+.... +-.+    +.++   +...+..+.++..
T Consensus       241 l~~i~---~-ll~afa-------~s--~~~llv~R~l~G~g~g~~~p~~~~-~isE----~~p~---~~Rg~~~g~~~~~  299 (742)
T TIGR01299       241 VNGFF---A-FFSSFV-------QG--YGFFLFCRLLSGFGIGGAIPIVFS-YFAE----FLAQ---EKRGEHLSWLCMF  299 (742)
T ss_pred             HHHHH---H-HHHHHH-------hh--HHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HCCH---HHHHHHHHHHHHH
Confidence            43221   1 111111       11  122333333344433332222222 2223    3333   2566777888888


Q ss_pred             HHHHHHHhHHHHHHHHhhc
Q 010361          301 DLLCEIAGASLFGILLSKY  319 (512)
Q Consensus       301 dl~~kilGP~lgGlL~s~~  319 (512)
                      -.++.+++|.+++.++..+
T Consensus       300 ~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       300 WMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            8888889998888776543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.67  E-value=2.3e-05  Score=83.33  Aligned_cols=53  Identities=13%  Similarity=0.120  Sum_probs=42.8

Q ss_pred             hHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 010361          417 GSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (512)
Q Consensus       417 ~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l  469 (512)
                      ...++.|+.+ .|++..+.|.+.++..+++.++..+.+++.+|+|..+...++.
T Consensus       263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~  316 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFG  316 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            3446667764 7999999999999988888888889999999999888665443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.58  E-value=0.00031  Score=76.60  Aligned_cols=281  Identities=10%  Similarity=0.050  Sum_probs=144.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      |++..-|.+-+++-+.-.++.-..+-+...-++ |.-+.+.....-.+...++-.+.|.++||++.|+++..+-++-.+ 
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i-  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII-  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH-
Confidence            566667777676666666666655554443466 888888888877888888878889999999999988877654322 


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH----
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID----  301 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id----  301 (512)
                           +.+...+...+...+  .+.+++.-++.|.....+..... .+ +.|-    ++   ++.-++++.....-    
T Consensus       113 -----~~~~~~~a~~~~~~s--~~~lli~r~l~Gigg~~f~~~~~-~v-s~wf----p~---~~rG~A~Gi~~g~G~~G~  176 (462)
T PRK15034        113 -----PCVWLGIAVQNPNTP--FGIFIVIALLCGFAGANFASSMG-NI-SFFF----PK---AKQGSALGINGGLGNLGV  176 (462)
T ss_pred             -----HHHHHHHHHcccCCC--HHHHHHHHHHHHHHHHhHHHHHH-HH-HHHC----CH---hHhHHHHHHHHHHHhhHH
Confidence                 121122111111112  23344444555554444433332 23 3343    32   25777777775333    


Q ss_pred             HHHHHHhHHHHHH-HHhhcch---------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCC
Q 010361          302 LLCEIAGASLFGI-LLSKYEP---------VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGP  371 (512)
Q Consensus       302 l~~kilGP~lgGl-L~s~~s~---------~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~  371 (512)
                      .++++++|.+.+. +++.++.         ..+...+..+...-.....+..++.  .  +    +.+            
T Consensus       177 ~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~--~--~----~~~------------  236 (462)
T PRK15034        177 SVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG--M--N----DIA------------  236 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh--C--C----Ccc------------
Confidence            3345666665543 3332221         1111111111111111111111111  1  1    000            


Q ss_pred             CCCCcchhHHhHHHHHHhHhhhhcCcc-hhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHH
Q 010361          372 VPDADNIVDVGIEAIKLGWKEYMQQPV-LPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATF  450 (512)
Q Consensus       372 ~~~~~~~~~~~~~~i~eG~~~y~~qpv-l~asla~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~  450 (512)
                        +.+    ..+++    +...+|+|. ++.++.+...|-.. .+++..++.|+++ .++.........++.+.+.++..
T Consensus       237 --~~~----~~~~~----~~~vlk~~~~Wllslly~~tFG~f-vg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rp  304 (462)
T PRK15034        237 --SSR----ASIAD----QLPVLQRLHLWLLSLLYLATFGSF-IGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARS  304 (462)
T ss_pred             --ccc----cCHHH----HHHHhCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHH
Confidence              000    01222    234667774 33333332222221 2344445555543 44444333334456677777788


Q ss_pred             HHHHHHHhhChhhHHHHHHHHHHHHH
Q 010361          451 LSAYLVRRLGILKAGAAGLIFQASLL  476 (512)
Q Consensus       451 lap~L~rRlG~~ragl~~l~~Q~~~L  476 (512)
                      +.+++..|+|..|...++.+...++.
T Consensus       305 lgG~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        305 VGGAISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHhcCchHHHHHHHHHHHHHH
Confidence            99999999999999888886555544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.55  E-value=4.4e-05  Score=82.79  Aligned_cols=53  Identities=11%  Similarity=-0.047  Sum_probs=43.2

Q ss_pred             HHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361          418 SLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       418 ~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~  470 (512)
                      ..++.|+++ .|+++...++......++.++|..+.+++.+|+|..+....+..
T Consensus       271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  324 (490)
T PRK10642        271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSV  324 (490)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            456677764 79998888888888899999999999999999999887655543

>PRK09952 shikimate transporter; Provisional

Probab=98.55  E-value=5.4e-05  Score=80.91  Aligned_cols=56  Identities=16%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             HHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 010361          418 SLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQA  473 (512)
Q Consensus       418 ~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~  473 (512)
                      +.+..|++ +.|+++...+.+....++.+++|+.+.+++.+|+|..|...++.....
T Consensus       271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~  327 (438)
T PRK09952        271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGT  327 (438)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            44566776 479998877666667777888899999999999999988777655433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.48  E-value=2.3e-05  Score=83.63  Aligned_cols=308  Identities=15%  Similarity=0.122  Sum_probs=178.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      +-|.-.|+|+..=-+.-.-+++|.|-+..+.-=|.-+.|+.+....+.+=+-=-..|.+.||.|.|+.|-...+..++. 
T Consensus        29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~-  107 (448)
T COG2271          29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV-  107 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH-
Confidence            3455577888888888888899999887666337888888888888888888888999999999999887776543221 


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                           .+++.+.     .+  ....++..++-|..+...-++....+. .|-+.   +||.....    .=+....+..-
T Consensus       108 -----nil~Gfs-----~s--~~~~~~l~~lng~fQg~Gwpp~~~~i~-~Wfsr---~eRG~~~s----iWn~shNiGGa  167 (448)
T COG2271         108 -----NILFGFS-----PS--LFLFAVLWVLNGWFQGMGWPPCARTIT-HWFSR---KERGTWWS----IWNTSHNIGGA  167 (448)
T ss_pred             -----HHHHhhh-----hH--HHHHHHHHHHHHHHhcCCCcHHHHHHH-HHcCc---cccCceEE----Eehhhhhcccc
Confidence                 1112111     11  122233334455555555555444443 25443   33322222    22223444444


Q ss_pred             HhHHHH--HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccccccccCCCCCCCC-CCCCcchhHHh
Q 010361          307 AGASLF--GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISS-GVLDRAKCSQSCCRTSNEGP-VPDADNIVDVG  382 (512)
Q Consensus       307 lGP~lg--GlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~-~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  382 (512)
                      +.|++.  |.+....+-..+..+..+   +.+...+   +++.+.++ |+-..- |+.++.+++..+. +++ +  ....
T Consensus       168 l~~~~~~la~~~~~~~w~~~f~~pgi---iaiival---~~~~~~rd~Pqs~GL-P~ie~~~~d~~e~~~~~-~--~~~~  237 (448)
T COG2271         168 LAPLVALLAFFAFHGGWRAAFYFPGI---IAIIVAL---ILLFLLRDRPQSEGL-PPIEEYRGDPLEIYEEE-K--ENEG  237 (448)
T ss_pred             hHHHHHHHHHHHhccchhHHHHHHHH---HHHHHHH---HHHHHhCCCccccCC-CCHHHhhcCchhhhhhh-c--cCCC
Confidence            555555  555544443333333332   1121222   23333321 110000 0000001000000 000 0  0000


Q ss_pred             HHHHHHhHhhhhcCcchhHH-HHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          383 IEAIKLGWKEYMQQPVLPAS-LAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       383 ~~~i~eG~~~y~~qpvl~as-la~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                      +....-=++|++++|.+... ++..++|+.= .+...=.+.|+.+ .|+|...-+...+.--++|+.|+++.+++..|+-
T Consensus       238 ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR-~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklf  316 (448)
T COG2271         238 LTAWQIFVKYVLKNKLIWLLALANVFVYVVR-YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF  316 (448)
T ss_pred             ccHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            11112236889999976654 6677888753 2344567889986 7999999999999999999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 010361          461 ILKAGAAGLIFQASLLAMAVAVYWSGS  487 (512)
Q Consensus       461 ~~ragl~~l~~Q~~~L~~~v~~f~~gs  487 (512)
                      -+|-+..++++... +.+|++.+|...
T Consensus       317 kgrR~p~~~i~~~~-i~~~~~~~w~~~  342 (448)
T COG2271         317 KGRRGPMALIFMLL-ITASLVLYWLAP  342 (448)
T ss_pred             ccccchHHHHHHHH-HHHHHHHHHcCC
Confidence            77777777764443 677888888664

>TIGR00898 2A0119 cation transport protein

Probab=98.48  E-value=4.4e-05  Score=82.30  Aligned_cols=116  Identities=12%  Similarity=0.029  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHH
Q 010361          181 LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGA  260 (512)
Q Consensus       181 ll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~  260 (512)
                      ....++...+..+..++.+++.|.+.||++||++++.+.++..+.    ..+..+   .    .+  .+.+++.-++.|.
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~----~~~~~~---~----~~--~~~~~~~r~l~G~  192 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVS----GVLTAF---S----PN--YTVFLVFRLLVGM  192 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHH----HHHHHH---c----cc--HHHHHHHHHHHHh
Confidence            566778888888889999999999999999999998877654332    111111   1    11  1223333344454


Q ss_pred             HHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 010361          261 VERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS  317 (512)
Q Consensus       261 i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s  317 (512)
                      ......+.... +-.|    .++++   +...+++.....-.+..+++|.+++.+..
T Consensus       193 ~~~~~~~~~~~-~~~e----~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       193 GIGGIWVQAVV-LNTE----FLPKK---QRAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             hccchHHHHHH-Hhhe----ecChh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            44443332222 2123    44442   56778888877778888999998887765

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.40  E-value=0.00017  Score=76.85  Aligned_cols=52  Identities=15%  Similarity=0.071  Sum_probs=42.2

Q ss_pred             HHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHH
Q 010361          425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL  476 (512)
Q Consensus       425 ~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~~L  476 (512)
                      .+.|++....++.....++++++++++.+++.+|+|..+...++.....++.
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~  350 (479)
T PRK10077        299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  350 (479)
T ss_pred             HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence            4578888777777777888899999999999999998888777776655544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.36  E-value=7.3e-05  Score=78.44  Aligned_cols=280  Identities=16%  Similarity=0.100  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHH
Q 010361          151 ALYACCLAGNLVEQLWN-FAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (512)
Q Consensus       151 ~L~~g~~lS~~Gdri~~-FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~l  228 (512)
                      ++..-+.+..++|.+.- +...||-  -++ +.-+++.+-.++.++.+++|+++|.++||++||+.-+.--+..    .+
T Consensus        38 ~yl~vY~La~~aDWLQGpY~Y~LY~--~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily----~~  111 (354)
T PF05631_consen   38 KYLLVYLLAMAADWLQGPYLYALYE--SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILY----SL  111 (354)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH----HH
Confidence            35667788899999874 4556663  467 8889999999999999999999999999999998755544333    23


Q ss_pred             HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCC--chhHHHHHHHHHH-HHHHHHH
Q 010361          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGIN--RPIALAKANAVLN-RIDLLCE  305 (512)
Q Consensus       229 s~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~--~~~~L~~aNs~l~-~Idl~~k  305 (512)
                      +|..   - ..    .+  .+.+++-=++.|.    ++.....+.| +|.+.=.++.  +++.|.+.=+.+. ..+.+..
T Consensus       112 scl~---k-~~----~~--~~~L~~GRvlgGi----aTSLLfS~FE-sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vA  176 (354)
T PF05631_consen  112 SCLT---K-HS----SN--YPVLLLGRVLGGI----ATSLLFSAFE-SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVA  176 (354)
T ss_pred             HHHH---H-hc----cc--cHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHH
Confidence            3322   1 01    11  1222222223333    3333444444 4643311110  1134554444444 3334444


Q ss_pred             HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (512)
                      |++-.++-.+....+-..-.++.+.+..     ..+-..++.+.++++.               ++..+    ..+..++
T Consensus       177 I~aGv~a~~l~~~~~~g~vaPF~~a~~~-----l~~~~~~I~~~W~ENy---------------g~~~~----~~~~~~~  232 (354)
T PF05631_consen  177 IGAGVVANVLADWFGFGPVAPFDAAIVL-----LAVAAVLILKTWPENY---------------GDTSS----SSSLSGS  232 (354)
T ss_pred             HHHhHHHHHHHHHhCCCCcchHHHHHHH-----HHHHHHHHHhcccccC---------------CCccc----ccchHHH
Confidence            5555555555444332111223221111     1111123333222211               00001    1234567


Q ss_pred             HHHhHhhhhcCcchhH-HHHHHH----HHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHH-Hhh
Q 010361          386 IKLGWKEYMQQPVLPA-SLAYVL----LCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLV-RRL  459 (512)
Q Consensus       386 i~eG~~~y~~qpvl~a-sla~al----L~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~-rRl  459 (512)
                      .+++++...++|-... .++-++    +|..|     -+.++-+... -.+.-.|++.+.--+..++|+-+++++. ++.
T Consensus       233 ~~~a~~~i~~d~ril~LG~~qslFE~smy~FV-----flWtPaL~~~-~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~  306 (354)
T PF05631_consen  233 FREAWRAILSDPRILLLGLIQSLFEGSMYLFV-----FLWTPALDPD-DEELPLGLIFSSFMVAMMLGSSLFSRLLSKSL  306 (354)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHhe-----eeeeceecCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8899999999874433 232222    22222     1222223311 1234599999999999999999998765 566


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHH
Q 010361          460 GILKAGAAGLIFQASLLAMAVA  481 (512)
Q Consensus       460 G~~ragl~~l~~Q~~~L~~~v~  481 (512)
                      .+..........-.+++.+.+.
T Consensus       307 ~~e~~l~~v~~~aa~~l~~pv~  328 (354)
T PF05631_consen  307 RPESLLRYVFAVAAVSLAIPVV  328 (354)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665555555555655544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.35  E-value=0.00091  Score=73.28  Aligned_cols=161  Identities=11%  Similarity=-0.095  Sum_probs=96.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecc-cCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR-~~Rr~vmi~~dlvq  222 (512)
                      |+++++.++...++..++-.....-+|.|+....+ |....+..............+..|.+.|| ++||+++...-++.
T Consensus        19 ~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~   98 (500)
T PRK09584         19 QPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL   98 (500)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            55678888888888888887777778888877777 66555444433333444555789999999 59999888776553


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+.   + .+  ..+. .   ..  ...+++..++.+....+..+.....+ .+|.    ++++ .+..++-+.....-.
T Consensus        99 ~ig---~-~l--~~~~-~---~~--~~~l~~~~~l~gig~g~~~~~~~~l~-~~~f----~~~~-~~~~~~~~~~~~~~~  160 (500)
T PRK09584         99 AIG---Y-AL--VAWS-G---HD--AGIVYMGMATIAVGNGLFKANPSSLL-STCY----EKDD-PRLDGAFTMYYMSIN  160 (500)
T ss_pred             HHH---H-HH--HHHh-c---cc--HHHHHHHHHHHHHhhhcccCCHHHHH-HHhc----CCCc-hhhhhcchHHHHHHH
Confidence            321   1 11  1111 1   11  11122333344444444333332222 2332    2221 245556666677778


Q ss_pred             HHHHHhHHHHHHHHhhcchhh
Q 010361          303 LCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~~~  323 (512)
                      ++.++||.++|.+....|...
T Consensus       161 iG~~~gp~i~g~l~~~~g~~~  181 (500)
T PRK09584        161 IGSFFSMLATPWLAAKYGWSV  181 (500)
T ss_pred             HHHHHHHHHHHHHHHhhCHHH
Confidence            889999999999988766443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.33  E-value=0.00023  Score=75.74  Aligned_cols=265  Identities=17%  Similarity=0.106  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          161 LVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTV  239 (512)
Q Consensus       161 ~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~  239 (512)
                      +.+.+-..=+|-+- ..++ |..++++.+++....+.+.+.++|.+++|+.+|+-++..-.+-++    .|.+ ++--..
T Consensus        27 ~~~~l~diLip~l~-~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av----g~~l-F~pAa~  100 (422)
T COG0738          27 FITCLNDILIPHLK-EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV----GAAL-FWPAAS  100 (422)
T ss_pred             HHhhcchhhHHHHH-HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH----HHHH-Hhhhhh
Confidence            33444444455443 4455 999999999999999999999999999999999988887654432    2223 221000


Q ss_pred             cccCCCchhHHHHHH-HHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH---HHHHHHHhHHHHHHH
Q 010361          240 IPTSSSMLLHPWFFV-LVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI---DLLCEIAGASLFGIL  315 (512)
Q Consensus       240 ~~~~~~~l~~~l~~v-~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I---dl~~kilGP~lgGlL  315 (512)
                      .   .   .+..|.+ ++++++.-.+.+++.+.-+     -.+-++    +  .++.+|...   ..+..++||.+++.+
T Consensus       101 ~---~---~y~~FL~~lFila~Gi~~LetaaNp~v-----~~lg~~----~--~a~~rlnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         101 S---K---SYGFFLVALFILASGIGLLETAANPYV-----TLLGKP----E--SAAFRLNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             h---h---hHHHHHHHHHHHHhhhHHHHhccchHH-----HHhCCc----h--hHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            0   1   1222322 2334443334333333322     123332    1  455555544   455789999999999


Q ss_pred             Hhh-----cchh-hHHHHHHHHHHHHHHH----HHH-HHHHHHhh-ccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          316 LSK-----YEPV-TCLKFAAGLIMWSLPV----MII-LTWFTNKI-SSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       316 ~s~-----~s~~-~~i~~~~~~~~~s~~s----~~l-l~~~i~rv-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      +-.     .++. .-.........+..+-    .++ .+..+... +.|+.+..              +++.. ..+   
T Consensus       164 ils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~--------------~~~~~-~~~---  225 (422)
T COG0738         164 ILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA--------------APSLG-ASG---  225 (422)
T ss_pred             HHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc--------------ccccc-ccc---
Confidence            773     1110 0000100000011110    000 00111111 11211100              00100 000   


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~  462 (512)
                         ..+..+.+|||-++......++|.-+=-+.++.++.|+.+ .|+++.+-+...+..=++-++|=++..++++|+...
T Consensus       226 ---~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~  302 (422)
T COG0738         226 ---SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE  302 (422)
T ss_pred             ---cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence               0156778899998888777888876533577889999987 899999999999999999999999999999999999


Q ss_pred             hHHHHHH
Q 010361          463 KAGAAGL  469 (512)
Q Consensus       463 ragl~~l  469 (512)
                      |.....-
T Consensus       303 k~Laf~a  309 (422)
T COG0738         303 KYLAFYA  309 (422)
T ss_pred             HHHHHHH
Confidence            9865433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.28  E-value=8.4e-05  Score=79.78  Aligned_cols=283  Identities=13%  Similarity=0.079  Sum_probs=142.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChh-HHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIP-AYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~-vmi~~dlvq  222 (512)
                      ++++|+++-..++.--+.-.++.==+|+++.+.-+ |.-.+|+.-.+..+..+++.|..|.+.||...|| .+...-+..
T Consensus         5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL   84 (412)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence            45667776666655555544444444555555556 9999999999999999999999999999998544 444433211


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHH----HHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKAN----AVLN  298 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aN----s~l~  298 (512)
                          ++..+...+.+  .+    ++....++.+++.+..-.++-.+-..++|.     .+     ++..|.|    ++.|
T Consensus        85 ----~l~~pff~~v~--~p----ll~~n~~lg~iig~i~l~~~f~~~~~~~Ea-----~~-----er~sr~~~feYG~~R  144 (412)
T PF01306_consen   85 ----LLFGPFFIYVF--GP----LLQSNFWLGAIIGGIYLGLVFNAGVPLSEA-----YA-----ERVSRRNGFEYGRAR  144 (412)
T ss_dssp             ----HTCHHHHHHTH--HH----HHHTT-HHHHHHTTTTTTTTTTTHHHHHHH-----HH-----HHHHHHHSS-HHHHH
T ss_pred             ----HHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHcccchHHHH-----HH-----HHHHHHhcCCcchHH
Confidence                11222212211  00    000011111111111001100011111111     11     1233332    4556


Q ss_pred             HHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcch
Q 010361          299 RIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNI  378 (512)
Q Consensus       299 ~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  378 (512)
                      .=-+++-.++..++|.+++. +|....+..      +....++ +.++...+ +.  ++++.  +..+ .+    +.++ 
T Consensus       145 ~wGSig~ai~s~~~G~L~~i-~p~~~fwi~------s~~~~il-~lll~~~~-~~--~~~~~--~~~~-~~----~~~~-  205 (412)
T PF01306_consen  145 MWGSIGFAIASLLAGILFNI-NPNIIFWIA------SAAAIIL-LLLLLLLK-PD--VPPQA--EVAD-AL----GAKK-  205 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHHHH-HHHHHSS------SSSSS---SST-TS----SS---
T ss_pred             HHhhHHHHHHHHHhheeeee-CccHHHHHH------HHHHHHH-HHHHHHcC-Cc--Cchhh--hhhc-cc----ccCC-
Confidence            66678889999999999985 443322221      1111111 11111111 10  00100  0000 00    0000 


Q ss_pred             hHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHH----HhCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 010361          379 VDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT----QRGLNPSIIGGFSGLCASMGVAATFLSAY  454 (512)
Q Consensus       379 ~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~----~lGls~~~iG~~~g~gavgGLlGt~lap~  454 (512)
                       ++.  . .......+|.|-+...+.+...--+.--.++.+...|.+    +.+.+...+|.+.+++.+.+.+.=+++|+
T Consensus       206 -~~~--~-~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~  281 (412)
T PF01306_consen  206 -DKV--S-LKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPW  281 (412)
T ss_dssp             --------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCC--c-HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHH
Confidence             000  1 122445678886666444322111111236666777765    35677889999999999999999999999


Q ss_pred             HHHhhChhhHHHHHHH
Q 010361          455 LVRRLGILKAGAAGLI  470 (512)
Q Consensus       455 L~rRlG~~ragl~~l~  470 (512)
                      +.+|+|..+..+.+..
T Consensus       282 li~rig~k~~Lllag~  297 (412)
T PF01306_consen  282 LINRIGAKNLLLLAGV  297 (412)
T ss_dssp             HHHHH-HHHHHHHHHH
T ss_pred             HHHhcChHhHHHHHHH
Confidence            9999999887766543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.21  E-value=0.0029  Score=68.83  Aligned_cols=150  Identities=13%  Similarity=-0.042  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc----C-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          152 LYACCLAGNLVEQLWNFAWPSAIALLH----P-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       152 L~~g~~lS~~Gdri~~FAlpL~~~~l~----~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      ...+.+.-.+...+..++.|.+--..+    + +....+.......+..++..++.|.+.||++||+++..+.++-.+. 
T Consensus        21 ~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~-   99 (502)
T TIGR00887        21 AGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA-   99 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-
Confidence            344444444445555566665443221    1 2345567777788888999999999999999999988776543321 


Q ss_pred             HHHHHHHHHHHhhcccCCCch-hHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSML-LHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l-~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                        + .+  .......  .... ...+++.-++.|.......+... .+-.+|    .++   +...++.+.+.....+..
T Consensus       100 --~-~~--~~~~~~~--~~~~~~~~~~~~r~l~G~~~g~~~~~~~-~~~~e~----~p~---~~Rg~~~~~~~~~~~~g~  164 (502)
T TIGR00887       100 --T-VA--SGLSPGS--SPKSVMATLCFWRFWLGVGIGGDYPLSA-IITSEF----ATK---KWRGAMMAAVFAMQGFGI  164 (502)
T ss_pred             --H-HH--HHHccCc--ccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHh----cCh---hhHHHHHHHHHHHHHHHH
Confidence              1 11  1111110  1110 11233333444554444333332 222343    333   256788888888888889


Q ss_pred             HHhHHHHHHHHh
Q 010361          306 IAGASLFGILLS  317 (512)
Q Consensus       306 ilGP~lgGlL~s  317 (512)
                      ++||.+++.+..
T Consensus       165 ~~g~~~~~~~~~  176 (502)
T TIGR00887       165 LAGAIVALIVLA  176 (502)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.17  E-value=4.7e-05  Score=80.44  Aligned_cols=115  Identities=20%  Similarity=0.188  Sum_probs=73.9

Q ss_pred             ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHH-HHHH
Q 010361          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFV-LVLA  258 (512)
Q Consensus       180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v-~~ll  258 (512)
                      +....|.++-.-.+-+.+-+|..|.+.||++||+++.+|.+.-+    ++  ..+|+...     +   ...+++ =++.
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va----~s--~ll~~~S~-----~---F~afv~aR~l~  131 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVA----LS--YLLWALSR-----N---FAAFVLARFLG  131 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHH----HH--HHHHHHHH-----H---HHHHHHHHHhh
Confidence            55667777877888888999999999999999999998875422    12  11232111     1   112222 1233


Q ss_pred             HHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 010361          259 GAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS  317 (512)
Q Consensus       259 g~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s  317 (512)
                      |+....-++...++  .|    ++.+   ++-..+=+.+...-++.-++||++||.+..
T Consensus       132 Gi~kgnl~v~rAii--sd----V~se---k~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  132 GIFKGNLSVIRAII--SD----VVSE---KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhccCchHHHHHHH--Hh----hcCh---hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            44333333332221  23    5554   256667778888888999999999999987

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.16  E-value=0.0044  Score=67.91  Aligned_cols=161  Identities=10%  Similarity=-0.081  Sum_probs=99.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecc-cCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR-~~Rr~vmi~~dlvq  222 (512)
                      |++.++.++..++..+++-....--+++|+....+ +.-.++.......+...++.+++|.+.|| ++|||++....++.
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~   91 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL   91 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence            77888888888888888888888778888877666 55544444333444455566789999999 99999999987665


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+.   +..+ .+  ...   ..   ..+++...+.+....+..+.....+ .|+    .++++ ++..++-+.....-.
T Consensus        92 ~~g---~~~~-~~--~~~---~~---~ll~~~~~l~~ig~g~~~~~~~~li-~~~----~p~~~-~~~~~~~~~~~~~~n  153 (489)
T PRK10207         92 AIG---YFMT-GM--SLL---KP---DLIFIALGTIAVGNGLFKANPASLL-SKC----YPPKD-PRLDGAFTLFYMSIN  153 (489)
T ss_pred             HHH---HHHH-HH--hcc---ch---hHHHHHHHHHHhccccccCCHHHHH-HHh----cCCCc-hhhhcchhHHHHHHH
Confidence            332   2111 11  110   01   1122333344444444333222222 232    33321 244556666777777


Q ss_pred             HHHHHhHHHHHHHHhhcchhh
Q 010361          303 LCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~~~  323 (512)
                      ++..+||.++|.+.+.+|-..
T Consensus       154 ig~~~g~~l~g~l~~~~gw~~  174 (489)
T PRK10207        154 IGSLISLSLAPVIADKFGYSV  174 (489)
T ss_pred             HHHHHHHHHHHHHHHhhChHH
Confidence            888999999999988877433

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.14  E-value=0.0015  Score=71.50  Aligned_cols=261  Identities=12%  Similarity=0.077  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHcC-ChhH-HHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010361          167 NFAWPSAIALLHP-SLLP-VAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS  244 (512)
Q Consensus       167 ~FAlpL~~~~l~~-Sll~-vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~  244 (512)
                      .|+.|-+ ..-.+ |.-+ .+...-+-+..+.++..++|.+.||++-|+++...-++-.+.   . .+..+.       .
T Consensus        46 s~a~p~L-~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~---t-~L~~fa-------~  113 (511)
T TIGR00806        46 SFITPYL-LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV---W-LLLLLG-------T  113 (511)
T ss_pred             HHHHHHH-HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH---H-HHHHHH-------H
Confidence            3555633 33556 7777 888888889999999999999999999999988776543221   1 111121       1


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhH
Q 010361          245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTC  324 (512)
Q Consensus       245 ~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~  324 (512)
                      +  ...+.++=+++|..+...- +....+- .|+|.       ++..++++..+....++.++||++++++.+ ++....
T Consensus       114 S--l~~L~i~R~llGvaEA~~~-A~~syI~-~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~qll~s-~gWr~y  181 (511)
T TIGR00806       114 S--VWHMQLMEVFYSVTMAARI-AYSSYIF-SLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQLLVT-LGWISY  181 (511)
T ss_pred             H--HHHHHHHHHHHHHHHHHHH-HHHHHHH-HHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhH
Confidence            1  2334555567788777766 5554443 47653       379999999999999999999999999554 554332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccccc-c-cCC-CC---CCC-CCC-CCcchhHHhHHHHHHhHhhhhc
Q 010361          325 LKFAAGLIMWSLPVMIILTWFTNKISSGV-LDRAKCSQ-S-CCR-TS---NEG-PVP-DADNIVDVGIEAIKLGWKEYMQ  395 (512)
Q Consensus       325 i~~~~~~~~~s~~s~~ll~~~i~rv~~~~-l~~~~~~~-~-~~~-~~---~~~-~~~-~~~~~~~~~~~~i~eG~~~y~~  395 (512)
                      .-.+. +.+.+....++..+++.++.+.. .+++++.+ . .++ +.   +++ ... ..+....+.++.+...++.-++
T Consensus       182 ~~Ln~-Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~  260 (511)
T TIGR00806       182 STLNI-ISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYR  260 (511)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhc
Confidence            22221 11222222222122222221000 00110000 0 000 00   000 000 0111222445566666777677


Q ss_pred             Cc-chhHHHHHHHHHHHhhhhhhHHHHHHHHH--hCCC---cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010361          396 QP-VLPASLAYVLLCLNVVLTPGSLMTAFLTQ--RGLN---PSIIGGFSGLCASMGVAATFLSAYLVR  457 (512)
Q Consensus       396 qp-vl~asla~alL~~tvll~~~~l~v~yl~~--lGls---~~~iG~~~g~gavgGLlGt~lap~L~r  457 (512)
                      +| ++.-++-.++-...    + .+.+.|.+.  ..+.   +..=|...++.-+.|-+++++++.+..
T Consensus       261 n~~vl~WSlWwa~a~~g----~-~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~  323 (511)
T TIGR00806       261 NPQLLLWSLWWVFNSAG----Y-YLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNI  323 (511)
T ss_pred             CcchhhhhHHHHHHhhH----H-HHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcC
Confidence            77 55556554332221    1 234444432  1222   235577777777777777888888743

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.13  E-value=0.0052  Score=67.39  Aligned_cols=133  Identities=16%  Similarity=0.071  Sum_probs=77.0

Q ss_pred             HcC-ChhHHHHHHHHHHHHHHHccccceeeec----ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----ccc-CCCc
Q 010361          177 LHP-SLLPVAVMGFFSKLILIVGGPLVGKLMD----HSPRIPAYICLNTVQAAAQLLSAAMIIHAHTV----IPT-SSSM  246 (512)
Q Consensus       177 l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvD----R~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~----~~~-~~~~  246 (512)
                      ..+ +...++....+..+..++..|.+|.+.|    |++|||.++..-..-.+   ++..++.+....    ... +.+.
T Consensus        33 ~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~---~~l~ll~~~~~~~~~~~~~~~~~~  109 (477)
T TIGR01301        33 ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA---FAVILIGFAADIGHLFGDNLDKKT  109 (477)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH---HHHHHHHhCchhhhhccccccccc
Confidence            345 8888999999999999999999999999    59999988765322111   121121121000    000 0000


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010361          247 LLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGIL  315 (512)
Q Consensus       247 l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL  315 (512)
                      ..+.+...++.+. +..++....+... |..++-+++++ +++...+|+.....-.+..++|+.+||.+
T Consensus       110 ~~~~i~~~~i~~~-lld~~~n~~~~p~-rALiaDl~p~~-~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       110 KPRAIIVFVVGFW-ILDVANNMLQGPC-RAFLADLTGGD-ARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHH-HHhcccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011111111111 1122333333333 34455577764 22456899999999999999999999986

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.12  E-value=0.00054  Score=73.38  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             hHHhHHHHHHhHhhhhcCcchhH-HHHHHHHHHHhhhhhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010361          379 VDVGIEAIKLGWKEYMQQPVLPA-SLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLV  456 (512)
Q Consensus       379 ~~~~~~~i~eG~~~y~~qpvl~a-sla~alL~~tvll~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~  456 (512)
                      ..+.+++.++-++..++|+-+.. +++. ++|.-.+-..-+..+.|.+ ..|++...++++.....+.+++|++++|++.
T Consensus       234 l~~g~k~L~~t~k~i~~~~~i~~FLiA~-~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld  312 (438)
T COG2270         234 LRNGFKELKSTFKEIRGRKNLVLFLIAR-FFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLD  312 (438)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788888888884433 3333 3332111223356788988 5899999999999999999999999999999


Q ss_pred             HhhChhhHHHHHHHHHHHHHHHHHHHHh
Q 010361          457 RRLGILKAGAAGLIFQASLLAMAVAVYW  484 (512)
Q Consensus       457 rRlG~~ragl~~l~~Q~~~L~~~v~~f~  484 (512)
                      +|+|..+....++.   .....|+..+.
T Consensus       313 ~rfg~k~vl~~~lv---i~~~~~~~~~~  337 (438)
T COG2270         313 ERFGSKPVLMIGLV---ILSIAALYLIF  337 (438)
T ss_pred             HHhCCceeehHHHH---HHHHHHHHHHH
Confidence            99999988777764   22344555444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.09  E-value=0.0018  Score=69.28  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=57.9

Q ss_pred             hhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361          392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG-LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       392 ~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lG-ls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~  470 (512)
                      .++|+|.++.-+..+++....-..+.+....|+++.| .+....|...+++.+.++.-=+..+++.||+|..+..+.+..
T Consensus       202 ~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~  281 (400)
T PF03825_consen  202 KLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV  281 (400)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4678886655444443332211335556778888887 889999999999999999999999999999997776555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.05  E-value=0.0045  Score=66.20  Aligned_cols=253  Identities=16%  Similarity=0.214  Sum_probs=141.0

Q ss_pred             ccccceeeecccC-----ChhHHHHH-HHHHHHHHHHHHHHHHHHHhh--cccC-CCchhHHHHH-HHHHHHHHHHHHhH
Q 010361          198 GGPLVGKLMDHSP-----RIPAYICL-NTVQAAAQLLSAAMIIHAHTV--IPTS-SSMLLHPWFF-VLVLAGAVERLTGV  267 (512)
Q Consensus       198 ~gp~aG~lvDR~~-----Rr~vmi~~-dlvq~~~v~ls~~li~~~~~~--~~~~-~~~l~~~l~~-v~~llg~i~~l~sv  267 (512)
                      +-++.|...|+++     ||.-.+.. .+.+.....+. +...+.+..  .... ..+....+.. +..+.|..-...++
T Consensus        30 ~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~a-p~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T  108 (403)
T PF03209_consen   30 LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIA-PFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT  108 (403)
T ss_pred             HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHH-HHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence            5789999999999     88755543 23333211111 111111111  0101 1111111111 12245555566666


Q ss_pred             hhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010361          268 ALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTN  347 (512)
Q Consensus       268 a~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~  347 (512)
                      ++-. .-.|    ++++   ++..++-+.+-..-.+.-+++..+.|.++.-+++..-+.+   ++...+....+-...+.
T Consensus       109 ~~lA-Ll~D----~~~e---~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v---~~~~a~i~~~l~~ia~w  177 (403)
T PF03209_consen  109 SFLA-LLAD----LAPE---ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV---IQGVALIALLLNLIALW  177 (403)
T ss_pred             HHHH-HHHh----cCCH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            5543 3345    5554   3677888888777778888888888888877776443322   22222222222223334


Q ss_pred             hhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-
Q 010361          348 KISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-  426 (512)
Q Consensus       348 rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-  426 (512)
                      ++.++   .++..+.       .++++         ...++-|+.++++|--+.-+.+.++...-+..-|.++=+|.-+ 
T Consensus       178 g~E~r---~~~~~~~-------~~~~~---------~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~V  238 (403)
T PF03209_consen  178 GQEPR---RSRRAAA-------AERPR---------PPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEV  238 (403)
T ss_pred             hcccC---CcccccC-------CCCCC---------ccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHH
Confidence            43111   1111000       00111         1245677888888866665554443332223456677778876 


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HhhChhhHHHHHHHHHHHHHHHHHH
Q 010361          427 RGLNPSIIGGFSGLCASMGVAATFLSAYLV-RRLGILKAGAAGLIFQASLLAMAVA  481 (512)
Q Consensus       427 lGls~~~iG~~~g~gavgGLlGt~lap~L~-rRlG~~ragl~~l~~Q~~~L~~~v~  481 (512)
                      .|++..+---+.+.-+.|.++|=.+++++. +|.+..|+..++...-..|+..-+.
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~  294 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL  294 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999998888888865 4888888877777766666544333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.02  E-value=0.00053  Score=70.05  Aligned_cols=157  Identities=15%  Similarity=0.002  Sum_probs=97.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++++++.++...++...+........|.++....+ +....+..........++..+..|.+.||++||+++....++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  276 (375)
T TIGR00899       197 ASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGV  276 (375)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHH
Confidence            56678888877777666666667778888877777 77777776666566667778899999999999998876544321


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +      ......  ...   +  .+.+++..++.+.......+.....++ +    +.++    +..++++.......+
T Consensus       277 ~------~~~~~~--~~~---~--~~~~~~~~~~~g~~~g~~~~~~~~~~~-~----~~~~----~~~~~~~~~~~~~~~  334 (375)
T TIGR00899       277 A------FYTGLA--ADN---S--LWALLMLQLLNAIFIGILAGIGMLYFQ-D----LMPG----RAGAATTLYTNTGRV  334 (375)
T ss_pred             H------HHHHHH--HHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hCcc----hhhHHHHHHHHHHHH
Confidence            1      111111  110   1  112222222333332332222222221 2    3333    445888988888889


Q ss_pred             HHHHhHHHHHHHHhhcchhh
Q 010361          304 CEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~  323 (512)
                      ...+||.++|.+.+..+...
T Consensus       335 g~~~g~~~~g~~~~~~g~~~  354 (375)
T TIGR00899       335 GWIIAGSVGGILAERWSYHA  354 (375)
T ss_pred             HHHHHHHHHHHHHHhccchh
Confidence            99999999999998776443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.95  E-value=0.03  Score=61.71  Aligned_cols=162  Identities=10%  Similarity=-0.083  Sum_probs=100.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc-CChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-~Rr~vmi~~dlvq  222 (512)
                      |++.++.++.-+....++......-+|+|+....+ +...++.+.....+...+..+++|.+.||+ +|||++...-++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            78888888888888888888888889999888777 777777776666777778888999999999 9999987776654


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+.    ..+  ..  ...  ..  ...+++.+.+..+...++..... ++-.+    +.++++ .+..++-+.....-.
T Consensus        87 ~lg----~ll--l~--~~~--~~--~~~~~l~l~li~iG~G~~~~~~~-alv~e----lfp~~~-~~R~sgf~i~Y~~~n  148 (493)
T PRK15462         87 AIG----HVV--LG--ASE--IH--PSFLYLSLAIIVCGYGLFKSNVS-CLLGE----LYEPTD-PRRDGGFSLMYAAGN  148 (493)
T ss_pred             HHH----HHH--HH--Hhh--cc--hhHHHHHHHHHHHhcccccccHH-HHHHH----HCCCCC-ccccceehHHHHHHH
Confidence            332    111  11  110  00  01122222122222222222111 22123    333321 145556666666666


Q ss_pred             HHHHHhHHHHHHHHhhcchhhH
Q 010361          303 LCEIAGASLFGILLSKYEPVTC  324 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~~~~  324 (512)
                      +...+||.++|.+....|.+.+
T Consensus       149 lG~~iap~l~g~L~~~~Gw~~~  170 (493)
T PRK15462        149 VGSIIAPIACGYAQEEYSWAMG  170 (493)
T ss_pred             HHHHHHHHHHHHHHhhhChHHH
Confidence            7889999999999876664443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.89  E-value=4.6e-05  Score=82.12  Aligned_cols=112  Identities=12%  Similarity=0.019  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALL---HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l---~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      ..+...--.+.++=+++.++++|=..-.+   ++ +.-.-++.+.+..+.+.+++|+.|.+.||+||+++|.....+=..
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            34444555677788899999999876554   34 788889999999999999999999999999999999887755433


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhh
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAV  273 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iav  273 (512)
                      ++.++... -            ..|.+.+.=.+.|..|.-+.+..+.-|
T Consensus       111 Av~~~~fs-~------------~Fwq~~l~R~~vGiGeAs~~~ia~s~I  146 (493)
T KOG1330|consen  111 AVFASGFS-N------------HFWQVLLCRGFVGIGEASYSPIAPSLI  146 (493)
T ss_pred             HHHHHHHH-H------------HHHHHHHHHHHhccchhhhcccchhHh
Confidence            32222111 0            012222222356777777777665544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.85  E-value=0.0018  Score=69.82  Aligned_cols=277  Identities=19%  Similarity=0.151  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010361          165 LWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSP-----RIPAYICLNTVQAAAQLLSAAMIIHAHT  238 (512)
Q Consensus       165 i~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~-----Rr~vmi~~dlvq~~~v~ls~~li~~~~~  238 (512)
                      +...+..-++-+-.+ ++-+.+.+.....+||.+ -|+.|.+.|.++     ||+-|+.+-++..+    +  .+.++. 
T Consensus         7 l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~----~--~~~~~~-   78 (433)
T PF03092_consen    7 LSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAV----S--ALVLAL-   78 (433)
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHH----H--HHHHHh-
Confidence            344455555556667 999999999999999976 899999999996     55555555444322    1  111111 


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 010361          239 VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK  318 (512)
Q Consensus       239 ~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~  318 (512)
                      .+....+.  ....+.+++......++|++.+.-+     +..+.++ ++.-.+..+.......+..++|-.++|.+...
T Consensus        79 ~~~~~~s~--~~~~~~l~la~~g~a~~DV~aDa~v-----vE~~~~~-p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~  150 (433)
T PF03092_consen   79 LPASESSA--AIAVVLLFLASFGYAFADVAADALV-----VELARRE-PESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS  150 (433)
T ss_pred             cccccchh--hhHHHHHHHHHHHHHHHHHhhhHHH-----HHHhhcC-CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            11111121  1122233334444556666554322     1123333 22233455666677777888899999999888


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcc
Q 010361          319 YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPV  398 (512)
Q Consensus       319 ~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpv  398 (512)
                      .++.....+........++..+   ++ .    +| +++++.. +... . ++++. ........+.+++-|+.+.+..+
T Consensus       151 ~~~~~~f~i~~~~~~l~~~~~~---~~-~----~e-~~~~~~~-~~~~-~-~~~~~-~~~~~~~~~~~~~l~~~~~~~~i  217 (433)
T PF03092_consen  151 FGPQGVFLISAALPLLMLIVAL---FL-L----EE-RKVRPAD-EVFS-F-GKEEV-PCLFGSFREQLSELWRALQQRAI  217 (433)
T ss_pred             CCCeEEehHHHHHHHHHHHHHH---Hh-h----hh-ccccccc-hhhc-c-ccccc-chhhHHHHHHHHHHHHHHhhhHH
Confidence            7765544332222121111111   11 1    11 1111100 0000 0 00000 11112234455555555545446


Q ss_pred             hhHHH-HHHHHHHHhhhhhhHHHHHHHH-HhC---CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 010361          399 LPASL-AYVLLCLNVVLTPGSLMTAFLT-QRG---LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIF  471 (512)
Q Consensus       399 l~asl-a~alL~~tvll~~~~l~v~yl~-~lG---ls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~  471 (512)
                      +++.+ ...+.+++. ..-++.+..|.. ..+   +++..+|.+..++++++++|.+++.+..++....+...+....
T Consensus       218 ~~~~~~~~~~~~~~~-~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~  294 (433)
T PF03092_consen  218 WQPILFFIFFFNLPP-SISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLV  294 (433)
T ss_pred             HHHHHHHHHHHHhcc-CCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            66654 222222221 111121112222 356   9999999999999999999999999999988877776555443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10504 putative transporter; Provisional

Probab=97.85  E-value=0.00035  Score=74.66  Aligned_cols=158  Identities=16%  Similarity=0.074  Sum_probs=109.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+....++...+..+..+-.|.|.....+ +....++......+..++..+..|.+.||++||++++.+-++-.
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~  338 (471)
T PRK10504        259 RTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLA  338 (471)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            67889999999999999998888999999887667 88888888887778888888999999999999999877654322


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +    .+.+  .. ....  .+. .+.+.+..++.|....+.....+..+..     .+++   +....+++.......+
T Consensus       339 ~----~~~~--~~-~~~~--~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~---~~~g~~~~~~~~~~~~  400 (471)
T PRK10504        339 L----VSLL--FM-LVAL--LGW-YYLLPFVLFLQGMVNSTRFSSMNTLTLK-----DLPD---NLASSGNSLLSMIMQL  400 (471)
T ss_pred             H----HHHH--HH-hccc--ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCH---HhccchHHHHHHHHHH
Confidence            1    1111  11 1111  111 1111222334444444444444433322     4443   3678889999999999


Q ss_pred             HHHHhHHHHHHHHhhcc
Q 010361          304 CEIAGASLFGILLSKYE  320 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s  320 (512)
                      ...+||.++|.+++..+
T Consensus       401 g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        401 SMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999988765

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.78  E-value=0.00065  Score=73.17  Aligned_cols=156  Identities=12%  Similarity=0.047  Sum_probs=94.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc--CChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~--~Rr~vmi~~dlv  221 (512)
                      ++++++.+..+.++..++......-+|.|+.+. + +...++.+.....+..++..+.+|.+.||.  ++++.....-..
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  317 (455)
T TIGR00892       239 THRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDK-GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFAL  317 (455)
T ss_pred             cCchHHHHHHHHHHHHHHccchHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence            567788877877877777666666677777664 5 888888888888888889999999999984  333322211100


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                        .  ......+..  ...   .+  .+.+++..++.|.......+.....+ .|    .+++   ++..++++.+....
T Consensus       318 --~--~~~l~~ll~--~~~---~~--~~~~~i~~~~~G~~~g~~~~~~~~~~-~~----~~~~---~~~g~~~g~~~~~~  378 (455)
T TIGR00892       318 --L--FNGLTHLLC--ALA---GD--YTGLVIYCIFFGLSFGSVGALLFEVL-MD----LVGA---QRFSSAVGLVTIVE  378 (455)
T ss_pred             --H--HHHHHHHHH--HHh---ch--HHHHHHHHHHHHHHhchHHHHHHHHH-HH----HhhH---HHHhhHHhHHHHHH
Confidence              0  001111111  111   11  12233334444443333222222111 12    4444   37889999999999


Q ss_pred             HHHHHHhHHHHHHHHhhcc
Q 010361          302 LLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s  320 (512)
                      .++.++||.++|.+....+
T Consensus       379 ~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       379 CCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHHHccccceeeeehhcC
Confidence            9999999999999987654

>TIGR01272 gluP glucose/galactose transporter

Probab=97.78  E-value=0.0056  Score=62.90  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=60.7

Q ss_pred             hhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH---hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 010361          393 YMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ---RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (512)
Q Consensus       393 y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~---lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l  469 (512)
                      .+++|.+.-.+..-++|...-.+..+-+..|+.+   .|+++.+.|...+....+..+|.++.+++.+|+|..|...++.
T Consensus       136 ~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       136 AFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            3455544444444455553323566678889874   4999999999999999999999999999999999988877666


Q ss_pred             HHHHH
Q 010361          470 IFQAS  474 (512)
Q Consensus       470 ~~Q~~  474 (512)
                      ....+
T Consensus       216 ~l~~~  220 (310)
T TIGR01272       216 FLAVL  220 (310)
T ss_pred             HHHHH
Confidence            54444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.75  E-value=0.0013  Score=66.37  Aligned_cols=160  Identities=16%  Similarity=0.097  Sum_probs=101.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChh--HHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIP--AYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~--vmi~~dlv  221 (512)
                      +++.++.+....++...+......-.|.++....+ +....+.+.....+..++..+..|.+.||.+||+  ........
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  292 (399)
T TIGR00893       213 KDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTA  292 (399)
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence            55678888899999999999999899999988777 8888888888888888999999999999999886  22221111


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      -... .+. .+..+  ....  ..  ...+.+....++.......+.....     +....++   ++..++++....+.
T Consensus       293 ~~~~-~~~-~~~~~--~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~g~~~~~~~~~~  356 (399)
T TIGR00893       293 IIAG-LVL-SLLMF--ATNY--VN--IPYAALALVALGFFGLGAGAIGWAL-----ISDNAPG---NIAGLTGGLINSLG  356 (399)
T ss_pred             HHHH-HHH-HHHHH--Hhcc--ch--hHHHHHHHHHHHHhchhhhhHHHHH-----HHhhcCh---hHHHHHHHHHHHHH
Confidence            0000 001 11011  1110  01  1111222222222211112222211     1224444   37889999999999


Q ss_pred             HHHHHHhHHHHHHHHhhcc
Q 010361          302 LLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s  320 (512)
                      .++..+||.++|.+....+
T Consensus       357 ~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       357 NLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHhhhhhhHHhhhhccCCC
Confidence            9999999999999988766

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.04  Score=59.16  Aligned_cols=275  Identities=15%  Similarity=0.080  Sum_probs=157.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAI--ALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~--~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      ++...+.||.+-..-..+=.+|..--|+-.  ..-++ |.-+.+++...-.+...++=.+-|.+.||++-|++.+.+-++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            344567789998888889899987666554  34455 899999998888888888899999999999988877766543


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      -      ..+++...+....  .+  .+.+++..+++|....-|.+.... + ..|-|.    +++-.=.-.|+.=+.--
T Consensus        89 ~------~IP~~~~~~a~~~--~~--~~~ll~~gll~G~~GasFav~m~~-~-s~~fP~----~~qG~AlGI~g~GN~G~  152 (417)
T COG2223          89 L------LIPCLGLAFAVTY--PS--TWQLLVIGLLLGLAGASFAVGMPN-A-SFFFPK----EKQGLALGIAGAGNLGV  152 (417)
T ss_pred             H------HHHHHHHHHHccC--Cc--hHHHHHHHHHHhcccceehccccc-c-cccCCh----hhhhHHHHHhccccccH
Confidence            2      2233222222211  22  145566666677666655554322 1 234333    32211223344333345


Q ss_pred             HHHHHHhHHHHHHHHh--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchh
Q 010361          302 LLCEIAGASLFGILLS--KYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIV  379 (512)
Q Consensus       302 l~~kilGP~lgGlL~s--~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  379 (512)
                      .++++++|.+......  +.   ..    ..+.+.-.+...+..+...+   ..++. |+              ..    
T Consensus       153 av~q~~~P~v~~~~g~~~w~---~~----~~i~~~~l~v~~v~~~~~~~---d~p~~-r~--------------~~----  203 (417)
T COG2223         153 AVAQLVAPLVAVAFGFLAWR---NV----AGIYVVALAIAAVLAWLGMN---DVPEH-RA--------------SV----  203 (417)
T ss_pred             HHHHHHHHHHHHHHhhHHHH---HH----HHHHHHHHHHHHHHHHHHhC---CChhh-hc--------------cc----
Confidence            6688999998876542  21   11    11111111121221122111   11110 10              00    


Q ss_pred             HHhHHHHHHhHhhhhcCc-chhHHHHHHHHHHHhh---hhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 010361          380 DVGIEAIKLGWKEYMQQP-VLPASLAYVLLCLNVV---LTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAY  454 (512)
Q Consensus       380 ~~~~~~i~eG~~~y~~qp-vl~asla~alL~~tvl---l~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~  454 (512)
                      +..+.   +-++-.+++| +++-+    ++|+..+   .+++..+..|+++ -|+++..-|.+-..+..-|.+.=-+.++
T Consensus       204 ~~~~~---~~~~~v~~~~~~W~ls----llY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~  276 (417)
T COG2223         204 KPQLP---AQLKAVFSNKDTWLLS----LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGW  276 (417)
T ss_pred             cccch---hHHHHHhcCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccch
Confidence            00010   2234455555 44333    3443221   3466677778875 5999999998877777777777777888


Q ss_pred             HHHhhChhhHHHHHHHH
Q 010361          455 LVRRLGILKAGAAGLIF  471 (512)
Q Consensus       455 L~rRlG~~ragl~~l~~  471 (512)
                      +..|+|-.|..++..+.
T Consensus       277 LsDR~Gg~rv~~~~f~~  293 (417)
T COG2223         277 LSDRIGGRRVTLAVFVG  293 (417)
T ss_pred             hhhhccchhHHHHHHHH
Confidence            99999999998776653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.70  E-value=0.0012  Score=66.46  Aligned_cols=155  Identities=15%  Similarity=0.024  Sum_probs=106.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWN-FAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~-FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +++.++.+....++..+...... ...|.+.....+ +....+.+.....+..++.++..|.+.||.+||+++..+-+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  287 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVI  287 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            56778877777777776665554 778888887667 8888888888888888999999999999999999877654322


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+    .+.+  ..  ...  .+  .+..++..++.+.......+.....+.+     .+++   ++..++++....+..
T Consensus       288 ~~----~~~~--~~--~~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~---~~~g~~~~~~~~~~~  347 (365)
T TIGR00900       288 GL----AILV--VG--LTP--PN--FPLFLVLWFAIGVGYGPINVPQGTLLQR-----RVPA---ELLGRVFGAQFSLSH  347 (365)
T ss_pred             HH----HHHH--HH--hhc--hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCH---HHHHHHHHHHHHHHH
Confidence            11    1111  11  111  11  1223444455566555555444433322     4544   378999999999999


Q ss_pred             HHHHHhHHHHHHHHhhc
Q 010361          303 LCEIAGASLFGILLSKY  319 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~  319 (512)
                      +...+||.++|.+...+
T Consensus       348 ~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       348 AAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99999999999998754

>PRK03545 putative arabinose transporter; Provisional

Probab=97.67  E-value=0.0033  Score=65.59  Aligned_cols=158  Identities=16%  Similarity=0.042  Sum_probs=91.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.++...++-..+......-.|.++.+..+ |.-..+.+.....+..++..++.|.+.||.+||+++...-+. .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~-~  281 (390)
T PRK03545        203 RRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALL-L  281 (390)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-H
Confidence            45566666655554444443322224445566556 777777777777788899999999999999987654433221 1


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +      ...... ...   .+  .+.+.+..++.|.......+..+..+.+     ..++    ...++++....+..+
T Consensus       282 ~------~~~~l~-~~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~-----~~~~----~~~~~~g~~~~~~~~  340 (390)
T PRK03545        282 V------CLLLLL-PAA---NS--EWHLSVLSIFWGIAIMCIGLAMQVKVLK-----LAPD----ATDVAMALFSGIFNI  340 (390)
T ss_pred             H------HHHHHH-HHh---ch--HHHHHHHHHHHHHHHhcchHHHHHHHHH-----hCCC----cHHHHHHHHHHHHHH
Confidence            1      111111 111   11  1122233333344333333333332222     3332    567889999999999


Q ss_pred             HHHHhHHHHHHHHhhcchhhH
Q 010361          304 CEIAGASLFGILLSKYEPVTC  324 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~  324 (512)
                      ...+||.++|.+...++....
T Consensus       341 g~~~G~~~~G~~~~~~g~~~~  361 (390)
T PRK03545        341 GIGAGALLGNQVSLHLGLSSI  361 (390)
T ss_pred             HHHHHHHHHHHHHhccChhHH
Confidence            999999999999998875443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.65  E-value=0.0028  Score=66.70  Aligned_cols=157  Identities=11%  Similarity=0.041  Sum_probs=96.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+....++..... ..+.-.|.++....+ +....+.+.....+..++.+...|.+.||.++++.+..+-++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~  300 (417)
T PRK10489        222 ASPVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSF  300 (417)
T ss_pred             cChHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHH
Confidence            4555555555555444332 345557888887666 77777777777777788888889999999877776665543321


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +      .++.+.  ..   .+  .+..++..++.|.......+.....++ +    .+++   +...++|+........
T Consensus       301 ~------~~~~~~--~~---~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~-~----~~p~---~~~g~~~g~~~~~~~~  359 (417)
T PRK10489        301 L------AVGLFG--LM---PM--WILAVLCLALFGYLSAISSLLQYTLLQ-T----QTPD---EMLGRINGLWTAQNVT  359 (417)
T ss_pred             H------HHHHHH--cc---ch--HHHHHHHHHHHHHHHHHHHHHHHHHHH-h----hCCH---HHHHHHHHHHHHHHhh
Confidence            1      111111  11   11  112233334445444444333332222 2    4443   3689999999999999


Q ss_pred             HHHHhHHHHHHHHhhcchhh
Q 010361          304 CEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~  323 (512)
                      +..+||.++|.+.+..+...
T Consensus       360 g~~~g~~l~G~l~~~~g~~~  379 (417)
T PRK10489        360 GDAIGAALLGGLGAMMTPVA  379 (417)
T ss_pred             hHhHHHHHHHHHHHHhchhh
Confidence            99999999999999887644

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.64  E-value=0.0022  Score=63.84  Aligned_cols=157  Identities=20%  Similarity=0.022  Sum_probs=112.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChh-HHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIP-AYICLNTVQAA  224 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~-vmi~~dlvq~~  224 (512)
                      +.++.+....++...+......-.|.+..+..+ +....+.......+..++..+..|.+.||.+||+ ++..+-++..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  254 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            567777888888888888888899999888867 8889999999999999999999999999999998 77766544322


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                          ...+  .. ...    +  .+..++..++.+.......+.....+.     ...++   ++..+.++.......++
T Consensus       255 ----~~~~--~~-~~~----~--~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~  313 (352)
T cd06174         255 ----GLLL--LA-LAP----S--LALLLVALLLLGFGLGFAFPALLTLAS-----ELAPP---EARGTASGLFNTFGSLG  313 (352)
T ss_pred             ----HHHH--HH-Hhc----c--HHHHHHHHHHHHHHHhccchhHHHHHH-----hhcCH---HHHHHHHHHHHHHHHHH
Confidence                1111  11 111    1  122334444555555554444433332     24554   37899999999999999


Q ss_pred             HHHhHHHHHHHHhhcchhhH
Q 010361          305 EIAGASLFGILLSKYEPVTC  324 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~~~  324 (512)
                      ..++|.++|.+....+....
T Consensus       314 ~~i~~~i~g~l~~~~~~~~~  333 (352)
T cd06174         314 GALGPLLAGLLLDTGGYGGV  333 (352)
T ss_pred             HHHHHHHHHHHhcccCcchH
Confidence            99999999999976665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.62  E-value=0.0046  Score=64.34  Aligned_cols=154  Identities=14%  Similarity=-0.018  Sum_probs=91.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +++.++....+.+...........-+|.++....-+...++.+.....+..++...+.|.+.||++||+++..+.++..+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~  277 (381)
T PRK03633        198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVIL  277 (381)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHH
Confidence            45556665555555554444444557888876422777777776677777888899999999999999988776554322


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                          .+..  ..   ..       ...+...++++.......+..+..+     ...+++   ++...+++.......++
T Consensus       278 ----~~~~--~~---~~-------~~~~~~~~l~g~~~~~~~p~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~lG  333 (381)
T PRK03633        278 ----GSIA--ML---SQ-------AAMAPALFILGAAGFTLYPVAMAWA-----CEKVEH---HELVAMNQALLLSYTVG  333 (381)
T ss_pred             ----HHHH--Hh---hh-------HHHHHHHHHHHHHHHhHHHHHHHHH-----HccCCH---HHHHHHHHHHHHHHHHH
Confidence                1111  11   00       0111222233333222222222211     113333   25666777776677788


Q ss_pred             HHHhHHHHHHHHhhcchh
Q 010361          305 EIAGASLFGILLSKYEPV  322 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~  322 (512)
                      ..+||.++|.+.+..+..
T Consensus       334 ~~igp~~~G~l~~~~g~~  351 (381)
T PRK03633        334 SLLGPSFTAMLMQNYSDN  351 (381)
T ss_pred             HHHHHHHHHHHHHHhCcc
Confidence            999999999999877643

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.62  E-value=0.0016  Score=65.76  Aligned_cols=159  Identities=15%  Similarity=0.014  Sum_probs=92.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +++.++.++...++..+.......-.+.+.....-+....+.+.....+..++..+..|.+.||++||+.+..+-++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       203 RTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAV  282 (377)
T ss_pred             cCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            56677777777766665554444334445433222666677777777888888999999999999999988776554322


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                      .    ..+  .. ....  ..  ....+...++.+.............+ .|    ..++   ++..++++.......+.
T Consensus       283 ~----~~~--~~-~~~~--~~--~~~~~~~~~~~g~~~g~~~~~~~~~~-~~----~~~~---~~~~~~~g~~~~~~~~g  343 (377)
T TIGR00890       283 G----MAA--ML-FIPM--LN--DVLFLATVALVFFTWGGTISLFPSLV-SD----IFGP---ANSAANYGFLYTAKAVA  343 (377)
T ss_pred             H----HHH--HH-Hccc--ch--hHHHHHHHHHHHHHhccchhccHHHH-HH----Hhhh---hhhhhHhHHHHHHHHHH
Confidence            1    111  11 1110  11  11111222222222111111111111 12    3443   36788999999999999


Q ss_pred             HHHhHHHHHHHHhhcchh
Q 010361          305 EIAGASLFGILLSKYEPV  322 (512)
Q Consensus       305 kilGP~lgGlL~s~~s~~  322 (512)
                      ..+||.++|.+.+..|..
T Consensus       344 ~~~~~~~~g~l~~~~g~~  361 (377)
T TIGR00890       344 GIFGGLIASHALTEIGFE  361 (377)
T ss_pred             HHHHHHHHHHHHhhhchh
Confidence            999999999998876643

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.0006  Score=72.64  Aligned_cols=232  Identities=13%  Similarity=0.021  Sum_probs=130.3

Q ss_pred             ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHH
Q 010361          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAG  259 (512)
Q Consensus       180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg  259 (512)
                      +-..+|++-.+-.+..++.+|+.|.+.||..+|--|+.--.+-    ..+.++  |+  .+   .+  .+.++++=.+=|
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vm----f~sTil--Fa--fg---~s--y~~l~vAR~LQg  170 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVM----FLSTIL--FA--FG---NS--YPMLFVARSLQG  170 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHH----HHHHHH--HH--Hc---ch--hHHHHHHHHHhh
Confidence            3344566666778888999999999999999987776655432    223233  22  11   11  123343333334


Q ss_pred             HHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 010361          260 AVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVM  339 (512)
Q Consensus       260 ~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~  339 (512)
                      .-+.+++++- .++-.|    ..++|  .+..++-+....--....++||++||.+|.+.|-..-..+-.   ++.++..
T Consensus       171 vgsA~~~tsg-lamlAd----~f~~d--~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~---~v~Lld~  240 (464)
T KOG3764|consen  171 VGSAFADTSG-LAMLAD----VFPED--NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLA---IVLLLDG  240 (464)
T ss_pred             hhHHHHHhhh-HHHHHH----Hcccc--hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHH---HHHHHHH
Confidence            4444444433 344334    34443  234555555666666678999999999999887432111111   1222222


Q ss_pred             HHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCc-chhHHHHHHHHHHHhhhhhhH
Q 010361          340 IILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQP-VLPASLAYVLLCLNVVLTPGS  418 (512)
Q Consensus       340 ~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qp-vl~asla~alL~~tvll~~~~  418 (512)
                      .+.++. .   +|    .+.+++        +.++            ..++...+++| ++....+....+... ...+.
T Consensus       241 ~L~l~v-i---~p----~~~~~~--------~~~~------------~~~~~~Ll~dP~I~~~agai~~~n~~l-afLeP  291 (464)
T KOG3764|consen  241 ALQLLV-I---EP----TEMDPD--------STEQ------------GTPMWSLLMDPYILLIAGAITFSNSSL-AFLEP  291 (464)
T ss_pred             HHHHhe-e---Cc----cccCcc--------cccc------------CccHHHHHhCchHhhhhcchhhccchH-HHhCc
Confidence            211111 1   11    111000        0001            11233445666 444444544455443 34555


Q ss_pred             HHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          419 LMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       419 l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      ....+..+ ...+.-.+|+..=-.++.-.+|+-+++.+.+|++..|
T Consensus       292 tlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~  337 (464)
T KOG3764|consen  292 TLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR  337 (464)
T ss_pred             ccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh
Confidence            66666654 5644449999999999999999999999999999776

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.60  E-value=0.0041  Score=64.51  Aligned_cols=158  Identities=11%  Similarity=0.033  Sum_probs=91.7

Q ss_pred             CCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHH
Q 010361          145 HPEGLYA-LYACCLAGNLVEQLWNFAWPSAIALLHPSL----LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLN  219 (512)
Q Consensus       145 ~~r~f~~-L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sl----l~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~d  219 (512)
                      +++.+.+ +....++...+.....--+|.++....++.    ...+.+..+..+..++..+..|.+.||++||+++...-
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~  295 (408)
T PRK09874        216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITAL  295 (408)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence            3344433 444445555666555556677776654421    22344444455667788899999999999999887765


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHH
Q 010361          220 TVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR  299 (512)
Q Consensus       220 lvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~  299 (512)
                      ++..+      .++.... ..    +  .+.+++..++.|.......+..+..+.+     ..++   ++..+..+....
T Consensus       296 ~~~~~------~~~~~~~-~~----~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~---~~~g~~~~~~~~  354 (408)
T PRK09874        296 IFSVL------LLIPMSF-VQ----T--PLQLGILRFLLGAADGALLPAVQTLLVY-----NSSN---QIAGRIFSYNQS  354 (408)
T ss_pred             HHHHH------HHHHHHH-hc----c--HHHHHHHHHHHHhhhHhhHHHHHHHHHH-----hCCc---ccceeeehHHHH
Confidence            43211      1111111 11    1  1223334444555555444444333322     2333   255677778888


Q ss_pred             HHHHHHHHhHHHHHHHHhhcchhh
Q 010361          300 IDLLCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       300 Idl~~kilGP~lgGlL~s~~s~~~  323 (512)
                      ...++..+||.++|.+....+...
T Consensus       355 ~~~~g~~~gp~~~G~l~~~~g~~~  378 (408)
T PRK09874        355 FRDIGNVTGPLMGAAISANYGFRA  378 (408)
T ss_pred             HHHHHHHhhHHHHHHHHhhcchhH
Confidence            889999999999999988776543

>TIGR00897 2A0118 polyol permease family

Probab=97.57  E-value=0.0088  Score=62.89  Aligned_cols=160  Identities=10%  Similarity=-0.074  Sum_probs=96.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHH-HHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYIC-LNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~-~dlvq  222 (512)
                      +++.++.+....++..++......-.|.++.. .+ +....+.+.....+..++..+..|.++||++||+.++. +-+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~  298 (402)
T TIGR00897       220 TNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGC  298 (402)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            56777777777777777777777778888755 56 76666666666677788999999999999998887642 21111


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .    +++..+.+......  .+  .+.+++..++.|.......+ .+..+ .+    + ++   ++..++.+..+....
T Consensus       299 ~----~~~~~l~~~~~~~~--~~--~~~~~~~~~~~G~~~~~~~~-~~~~~-~~----~-~~---~~~g~~~g~~~~~~~  360 (402)
T TIGR00897       299 G----IFTLALYYIPQHFG--HS--FAVALIIAIALGIFLAGYVP-LAAVF-PT----L-AP---KHKGAAMSVLNLSAG  360 (402)
T ss_pred             H----HHHHHHHHHHHccC--Cc--HHHHHHHHHHHHHHHHHHHH-HHHHH-Hh----h-Cc---chhHHHHHHHHHHHH
Confidence            1    11111111100000  11  11222333333433222222 22222 11    2 22   267889999999999


Q ss_pred             HHHHHhHHHHHHHHhhcchhh
Q 010361          303 LCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~~~  323 (512)
                      +...+||.++|.++...|...
T Consensus       361 lg~~~gp~i~g~l~~~~g~~~  381 (402)
T TIGR00897       361 LSAFLAPAIAVLFIGFFGAIG  381 (402)
T ss_pred             HHHHHHHHHHHHHHhhcchHH
Confidence            999999999999999877443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.52  E-value=0.0076  Score=63.09  Aligned_cols=160  Identities=13%  Similarity=-0.052  Sum_probs=98.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+.....+-.++-..|..-.|.++....+ +....+.+.....+..++.++..|.+.||++||+.+...-++..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~  292 (406)
T PRK15402        213 KNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMV  292 (406)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            66777777777666666656666667888777677 87777777666666777888999999999999998877654432


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +.    ..+..+......  ..  ...+++..++.+....+..+.......      .+.+   ++..+.++.+.....+
T Consensus       293 ~g----~~~~~~~~~~~~--~~--~~~~~~~~~~~g~g~~~~~~~~~~~~~------~~~~---~~~g~~~~~~~~~~~~  355 (406)
T PRK15402        293 AG----LLLAALATVISS--HA--YLWLTAGLSLYAFGIGLANAGLYRLTL------FSSD---VSKGTVSAAMGMLSML  355 (406)
T ss_pred             HH----HHHHHHHHHccc--cc--HHHHHHHHHHHHHHHHHHhhhHHHHHh------hhcc---ccccHHHHHHHHHHHH
Confidence            21    111111100110  11  112233334444444433322221111      1222   2577888888888888


Q ss_pred             HHHHhHHHHHHHHhhcch
Q 010361          304 CEIAGASLFGILLSKYEP  321 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~  321 (512)
                      +..+||.++|.++...+.
T Consensus       356 ~~~~g~~~~~~l~~~~~~  373 (406)
T PRK15402        356 IFTVGIELSKHAYLGGGN  373 (406)
T ss_pred             HHHHHHHHHHhcccCCch
Confidence            899999999999886654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.51  E-value=0.0022  Score=55.01  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             HHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhh
Q 010361          192 KLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGV  271 (512)
Q Consensus       192 ~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~i  271 (512)
                      .+..++.+++.|.+.||++||+.+........+.      .+.... ..    +  .+..++..++.+.......+....
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~------~~~~~~-~~----~--~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLS------TAMFAL-SS----N--ITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHH------HHHHHH-hc----c--HHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4556788999999999999999988776543221      111111 11    1  122333344445444443333332


Q ss_pred             hhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch
Q 010361          272 AVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEP  321 (512)
Q Consensus       272 averdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~  321 (512)
                      .+     ....++   ++..++++..+....+...+||.++|.+....+.
T Consensus        75 ~~-----~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  116 (141)
T TIGR00880        75 LI-----ADIYPP---EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGW  116 (141)
T ss_pred             HH-----HHHCCh---hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccch
Confidence            22     224444   3788999999999999999999999999876654

>PRK03699 putative transporter; Provisional

Probab=97.49  E-value=0.0094  Score=62.42  Aligned_cols=157  Identities=8%  Similarity=-0.014  Sum_probs=93.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       146 ~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      ++.++.+..+.++-.++......-.|.|+.+..+ +....+.+.....+..++..+..|.+.||++||+++...-.+..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALV  283 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            3456667777777777766666678888888777 877778777777777788888999999999999987765543211


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHH-HHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVE-RLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~-~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                          .+.+  +.  ..   .+.  +.+.+..++.|... ..+........  +    ..+++    -.+..+.+...-.+
T Consensus       284 ----~~~~--~~--~~---~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~--~----~~~~~----~~~~~g~~~~~~~~  340 (394)
T PRK03699        284 ----LMYL--FV--NT---DDP--SHLLYAILGLGFFSSAIYTTIITLGS--Q----QTKVA----SPKLVNFILTCGTI  340 (394)
T ss_pred             ----HHHH--HH--Hc---CCc--hHHHHHHHHHHHHHHHHHHHHHHHHH--H----HccCC----CHHHHHHHHHhhhH
Confidence                1111  11  11   111  12222333334322 12222221111  1    22222    12334555556677


Q ss_pred             HHHHhHHHHHHHHhhcchhhHH
Q 010361          304 CEIAGASLFGILLSKYEPVTCL  325 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i  325 (512)
                      ..++||.++|.+....|.....
T Consensus       341 g~~i~p~~~G~l~~~~g~~~~~  362 (394)
T PRK03699        341 GTMLTFVVTSPIVAHFGLQAAL  362 (394)
T ss_pred             HHHHHHHHHHHHHHHhCchhhh
Confidence            8999999999999887755443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.46  E-value=0.0038  Score=63.40  Aligned_cols=155  Identities=15%  Similarity=0.154  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~  227 (512)
                      +.......++...+......-+|.++....+ +....+.......+..++..+..|.+.||++||+.++..-.+..+   
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~---  297 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL---  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH---
Confidence            5666666677777777777778888877666 777778777777888889999999999999999977654432211   


Q ss_pred             HHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHH-HHHHHHHHH
Q 010361          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL-NRIDLLCEI  306 (512)
Q Consensus       228 ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l-~~Idl~~ki  306 (512)
                      ....+ ... ....  .+  .+..+...++.++.........+..+. |    +.+++   +..++++.. .....++..
T Consensus       298 ~~~~~-~~~-~~~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~-~----~~p~~---~~~~~~~~~~~~~~~~g~~  363 (394)
T TIGR00883       298 LAVPL-LMA-LLDS--GS--FTLFFFLVLGLALIGGMYTGPMGSFLP-E----LFPTE---VRYTGASLAYNLAGAIFGG  363 (394)
T ss_pred             HHHHH-HHH-HhcC--Cc--hHHHHHHHHHHHHHHHHHhhhHHHHHH-H----hCCcc---ceeeEeeehhHhHHHHHhh
Confidence            11111 111 1111  11  112222333344433333333332222 2    45442   455666653 334556778


Q ss_pred             HhHHHHHHHHhhcc
Q 010361          307 AGASLFGILLSKYE  320 (512)
Q Consensus       307 lGP~lgGlL~s~~s  320 (512)
                      +||.++|.+.+..+
T Consensus       364 ~~p~~~g~l~~~~g  377 (394)
T TIGR00883       364 FAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999998776

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.43  E-value=0.0051  Score=65.45  Aligned_cols=157  Identities=12%  Similarity=0.010  Sum_probs=104.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++++++......++..++......-+|.++....+ +....+.......+..++.++..|.+.||.+||+++...-++..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~  332 (485)
T TIGR00711       253 KYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYA  332 (485)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            56778887888888777777777888999988888 99999999888889999999999999999999998766543321


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +    .  .......... ..+  .+.++...++.|....+...........     .+++   ++..++++.......+
T Consensus       333 ~----~--~~~~~~~~~~-~~~--~~~~~~~~~l~g~g~~~~~~~~~~~~~~-----~~~~---~~~g~~~~~~~~~~~~  395 (485)
T TIGR00711       333 V----G--FYWRAFTFTP-DTP--FLAIALPQFIRGFGMGCFFMPLTTIALS-----GLPP---HKIARGSSLSNFTRQL  395 (485)
T ss_pred             H----H--HHHHhccCCC-CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCH---HHHhHHHHHHHHHHHH
Confidence            1    1  1111111111 111  1222333334444333333222222211     2333   4788999999999999


Q ss_pred             HHHHhHHHHHHHHhh
Q 010361          304 CEIAGASLFGILLSK  318 (512)
Q Consensus       304 ~kilGP~lgGlL~s~  318 (512)
                      +..+||.+.|.+++.
T Consensus       396 g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       396 GGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988774

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.43  E-value=0.0041  Score=67.66  Aligned_cols=156  Identities=17%  Similarity=0.057  Sum_probs=104.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++|.+.......++...+-....+-+|.++....+ |+...+++.....+...+.++.+|.+.||++||+++...-++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~  336 (495)
T PRK14995        257 THRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSA  336 (495)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            55667776777777777666677788888888888 99999999999999999999999999999999988765544321


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +    ...+  ... ... ..+  .+.++...++.|..........+..+..     .+++   ++...+.+.......+
T Consensus       337 ~----~~~~--l~~-~~~-~~~--~~~~~~~~~l~G~g~g~~~~~~~~~~~~-----~~~~---~~~g~~~~~~~~~~~l  398 (495)
T PRK14995        337 L----SFYG--LAM-TDF-STQ--QWQAWGLMALLGFSAASALLASTSAIMA-----AAPP---EKAAAAGAIETMAYEL  398 (495)
T ss_pred             H----HHHH--HHH-hcC-CCc--hHHHHHHHHHHHHhHHHHHHHHHHHHHh-----cCCH---HhcchHHHHHHHHHHH
Confidence            1    1111  111 111 111  1122333334444444444334443332     3333   3788899999999999


Q ss_pred             HHHHhHHHHHHHHhh
Q 010361          304 CEIAGASLFGILLSK  318 (512)
Q Consensus       304 ~kilGP~lgGlL~s~  318 (512)
                      ...+|+.++|.+++.
T Consensus       399 G~~~G~ai~g~i~~~  413 (495)
T PRK14995        399 GAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998774

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.03  Score=61.61  Aligned_cols=90  Identities=16%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             hHhhhhcCcchhHHHHHHHHHHHhhhhhhHHH--HHH----HHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChh
Q 010361          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLM--TAF----LTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (512)
Q Consensus       389 G~~~y~~qpvl~asla~alL~~tvll~~~~l~--v~y----l~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~  462 (512)
                      .++.++++|-+|..+...+..... ..++++.  ..|    +++.|+++..--+.-...++--++.|++++++++|+|..
T Consensus       257 sl~~~~~~~~lR~~~~i~~~v~~~-qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR  335 (485)
T KOG0569|consen  257 SLRQLLKNPTLRRPLLIGIVVSFA-QQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR  335 (485)
T ss_pred             cHHHHhcCcchhHHHHHHHHHHHH-HHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            578889999888764333222111 2233222  122    346799999988999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 010361          463 KAGAAGLIFQASLLAMA  479 (512)
Q Consensus       463 ragl~~l~~Q~~~L~~~  479 (512)
                      +..+.+.....++..+-
T Consensus       336 pLll~~~~~~~~~~~~~  352 (485)
T KOG0569|consen  336 PLLLISLSLMAVALLLM  352 (485)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888887776666443

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.37  E-value=0.012  Score=61.56  Aligned_cols=153  Identities=14%  Similarity=-0.040  Sum_probs=83.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      +....+....++.......+..-.|.++....+ +....+.+.....+..++..+..|.+.||++||+.+...-+.- + 
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~-~-  293 (393)
T PRK15011        216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAG-V-  293 (393)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH-H-
Confidence            333444344444444445555668888877667 7777777665555666777899999999999999776543221 1 


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                        ..+..  .. ...    +  .+..++..++.+....+....... +-.+    +.++    +..++++....+-.+..
T Consensus       294 --~~~~~--~~-~~~----~--~~~~l~~~~l~~~~~g~~~~~~~~-~~~~----~~p~----~~g~~~~~~~~~~~lg~  353 (393)
T PRK15011        294 --CFYAG--ML-MAH----S--PAILLGLQLLNAIYIGILGGIGML-YFQD----LMPG----QAGSATTLYTNTSRVGW  353 (393)
T ss_pred             --HHHHH--HH-HHh----h--HHHHHHHHHHHHHHHHHHHHHHHH-HHHH----hCCC----CcchHHHHHHHHHHHHH
Confidence              11111  11 111    1  111111111122211121111111 1123    2332    34567777777778889


Q ss_pred             HHhHHHHHHHHhhcch
Q 010361          306 IAGASLFGILLSKYEP  321 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~  321 (512)
                      .+||.++|.+...++.
T Consensus       354 ~~g~~l~G~i~~~~g~  369 (393)
T PRK15011        354 IIAGSLAGIVAEIWNY  369 (393)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999887653

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.36  E-value=0.011  Score=61.58  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=95.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHH-HHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLIL-IVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~-ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +++.++.+....++...++....--.+.++.+. + +.-.++.+........ ++.....|.++||+++|++++.+-++.
T Consensus       206 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       206 RRPLAWSLLALALLSAMTAVSGFGLSKLYLVDA-GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            556677777788888887776666677888774 6 8888888766555444 444678999999999999887765443


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+.    ..+ .+..........  ...++...++.+....+..+.....+.+     .++++  ++-.+..+..+.+..
T Consensus       285 ~~~----~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~--~~~g~~~~~~~~~~~  350 (390)
T TIGR02718       285 GSL----ALL-WFAQAAFWLAPG--IAVAWSCSAFGSLITGITSVAIYTAFMR-----FAGDG--DQAGTDVTAVQSTRD  350 (390)
T ss_pred             HHH----HHH-HHHHHHcccCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCcc--cchHHHHHHHHHHHH
Confidence            221    111 111111000001  1111222222222223332322222222     12221  245667778888889


Q ss_pred             HHHHHhHHHHHHHHhhcch
Q 010361          303 LCEIAGASLFGILLSKYEP  321 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~  321 (512)
                      +...+||.++|.++...|.
T Consensus       351 lg~~~g~~~~G~l~~~~G~  369 (390)
T TIGR02718       351 LGELIASSIAGYLTDRFGY  369 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            9999999999999997764

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=97.36  E-value=0.0047  Score=62.96  Aligned_cols=147  Identities=18%  Similarity=0.052  Sum_probs=92.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      +.+..++...++...+......-.|.+ ....+ +....+.+.....+..++..+..|.+.||++||+++...-+. .  
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~--  325 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLPKL-MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG-A--  325 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-H--
Confidence            445566777777666666666667744 44445 777788888888888899999999999999998554433221 1  


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                        +.+.+ ... ...    +  .+..++..++.+.......+.....+.     .++++   ++..++.+.+..+..+..
T Consensus       326 --~~~~~-~~~-~~~----~--~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~---~~~g~~~g~~~~~~~~g~  387 (398)
T TIGR00895       326 --VFAVL-VGS-TLF----S--PTLLLLLGAIAGFFVNGGQSGLYALMA-----LFYPT---AIRATGVGWAIGIGRLGA  387 (398)
T ss_pred             --HHHHH-HHH-Hhh----C--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCH---HHHHHHHHHHHHHHHHHH
Confidence              11111 111 111    1  122333344455544444443333222     25554   378899999999999999


Q ss_pred             HHhHHHHHHH
Q 010361          306 IAGASLFGIL  315 (512)
Q Consensus       306 ilGP~lgGlL  315 (512)
                      .+||.++|.+
T Consensus       388 ~~g~~~~G~l  397 (398)
T TIGR00895       388 IIGPILAGYL  397 (398)
T ss_pred             HHHHHhHHhc
Confidence            9999999976

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.34  E-value=0.035  Score=57.88  Aligned_cols=78  Identities=13%  Similarity=0.189  Sum_probs=54.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +++.++.+++..++...+-..+..-.+.+.....+ +....+.+.....+..++..++.|.+.||.+||+++....++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~  275 (382)
T PRK10091        197 RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFII  275 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHH
Confidence            34455666665555554444443334445555566 8888888888888888999999999999999999887766543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.34  E-value=0.022  Score=59.83  Aligned_cols=78  Identities=17%  Similarity=0.055  Sum_probs=53.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHH-HHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFF-SKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~-~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +|+.++.+....++-..+......-.+.++....+ +...++.+... ..+..++.++..|.+.||++||+.+...-++.
T Consensus       207 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~  286 (402)
T PRK11902        207 SRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQ  286 (402)
T ss_pred             hCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            67778887777777666655433223334555566 87777777543 34557788899999999999999877665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.081  Score=57.98  Aligned_cols=247  Identities=15%  Similarity=0.062  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHH
Q 010361          183 PVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVE  262 (512)
Q Consensus       183 ~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~  262 (512)
                      +-+..--+...-.++-.-++|.++||++-|+++..+-++-+++    ..+..++...+       .+.++++=++-|..+
T Consensus        74 ~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~----t~l~P~aa~~~-------~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   74 EKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALL----TLLTPLAASIG-------FYLLLVLRFLQGLGQ  142 (466)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHhc-------chhhHHHHHHhHHHH
Confidence            3344444445556677788999999999999988887654432    12222321111       122334444566655


Q ss_pred             HHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh-cchhh-HHHHHHHHHHHHHHHHH
Q 010361          263 RLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK-YEPVT-CLKFAAGLIMWSLPVMI  340 (512)
Q Consensus       263 ~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~-~s~~~-~i~~~~~~~~~s~~s~~  340 (512)
                      ...-++... +...|.|.   +    +-.+.=+.+..-.++..+++=+++|.|-+. +|.+. ...+.....++.+    
T Consensus       143 g~~~pa~~~-i~~~W~P~---~----Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~----  210 (466)
T KOG2532|consen  143 GVLFPAIGS-ILAKWAPP---N----ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFI----  210 (466)
T ss_pred             hHHHhhhhc-eeeeECCH---H----HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHH----
Confidence            555555543 44568776   2    466667777777788888888888888876 55432 1222211111211    


Q ss_pred             HHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHH
Q 010361          341 ILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLM  420 (512)
Q Consensus       341 ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~  420 (512)
                       ..+...+ .+|..++.-.++  +++--++++.+.....     ...--|+-.+++|.+.+.....+.++..+..+...+
T Consensus       211 -~w~~~~~-d~P~~h~~is~~--El~~I~~~k~~~~~~~-----~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~  281 (466)
T KOG2532|consen  211 -LWFLFYS-DSPSKHPNISEK--ELKYIEKGKSEAHVKK-----KPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL  281 (466)
T ss_pred             -HHHHHhc-CCcccCCCCCHH--HHHHHHhcccccccCC-----CCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1111111 112111100000  0000000000000000     012357778899988887665544433223344567


Q ss_pred             HHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 010361          421 TAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (512)
Q Consensus       421 v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~  461 (512)
                      +.|+++ +|++-..-|++.++=-+...+-.++++.+..|+-.
T Consensus       282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            889886 89999999999988777777766666666655543

>TIGR00889 2A0110 nucleoside transporter

Probab=97.29  E-value=0.012  Score=62.82  Aligned_cols=159  Identities=11%  Similarity=0.020  Sum_probs=96.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHHHHHHccccceeeecccCChhHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPS--------LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYI  216 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~S--------ll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi  216 (512)
                      +++.++.+....++....-.....=.|.++.+...+        .-.+++......+..++...++|.+.||.+||+++.
T Consensus       206 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~  285 (418)
T TIGR00889       206 KNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML  285 (418)
T ss_pred             cCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            666777777777776554444444446666554322        244566667777788888999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHH
Q 010361          217 CLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV  296 (512)
Q Consensus       217 ~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~  296 (512)
                      .+-++..+    .  ...+... ..  .....+.+++..++.+....+..+.....+. +    ..++   ++..++.+.
T Consensus       286 ~~~~~~~v----~--~~l~~~~-~~--~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~-~----~~p~---~~~g~~~g~  348 (418)
T TIGR00889       286 LSLVAWAL----R--FGFFAYG-DP--EYFGYALLFLSMIVYGCAFDFFNISGSVFVE-K----EVPV---HIRASAQGL  348 (418)
T ss_pred             HHHHHHHH----H--HHHHHHc-Cc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HCCH---HHHHHHHHH
Confidence            87654322    1  1111111 11  0101122333444555555555444333232 2    3333   378889999


Q ss_pred             HH-HHHHHHHHHhHHHHHHHHhhcc
Q 010361          297 LN-RIDLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       297 l~-~Idl~~kilGP~lgGlL~s~~s  320 (512)
                      .. ....+..++||.++|.++...+
T Consensus       349 ~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       349 FTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            97 5677899999999999998754

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10054 putative transporter; Provisional

Probab=97.26  E-value=0.0089  Score=63.02  Aligned_cols=158  Identities=11%  Similarity=0.074  Sum_probs=91.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP---SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~---Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      +++.++.+....++..+.........+.+.....+   +...++.+-....+..+.+.++.|.+.||.++|+++...-++
T Consensus       204 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  283 (395)
T PRK10054        204 QDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLC  283 (395)
T ss_pred             cCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHH
Confidence            67888888888888888877766677777655543   334445554444555566678899999999999877655433


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      ..+    .  .+.+... .   ++  .+.+++..++.+..+....+..+..+.+     +++++   ...+.-+.. ..-
T Consensus       284 ~~~----~--~~~~~~~-~---~~--~~~~~~~~~~~~~g~~~~~p~~~~~~~~-----~~p~~---~~~~~~~~~-~~~  342 (395)
T PRK10054        284 FVI----G--LVGFIFS-G---NS--LLLWGMSAAVFTVGEIIYAPGEYMLIDH-----IAPPG---MKASYFSAQ-SLG  342 (395)
T ss_pred             HHH----H--HHHHHHc-c---hH--HHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCcc---cceehHhHH-HHH
Confidence            221    1  1111111 0   11  1223444445555544444433322322     34432   222332221 233


Q ss_pred             HHHHHHhHHHHHHHHhhcchhh
Q 010361          302 LLCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s~~~  323 (512)
                      .+...+||.++|.++...++..
T Consensus       343 ~~G~~~Gp~~~G~l~~~~g~~~  364 (395)
T PRK10054        343 WLGAAINPLVSGVILTTLPPWS  364 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcChhh
Confidence            3578999999999999887644

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.25  E-value=0.019  Score=61.82  Aligned_cols=153  Identities=14%  Similarity=0.004  Sum_probs=97.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.++...++..........-.|.|+....+ |...++.+.....+..++..+..|.+.||++||+.+...-....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~  335 (467)
T PRK09556        256 KNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALAL  335 (467)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            56678888888877777666666678999988888 88888888888888889999999999999999987655432211


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhh-hhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGV-AVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~i-averdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      +    ...++.+  ...   .+  ....++..+++|...  ....... ....|    ..++   +....+++..+..-.
T Consensus       336 ~----~~~~~~~--~~~---~~--~~~~~~~~~~~G~~~--~~~~~~~~~~~~~----~~p~---~~~g~a~gi~~~~g~  395 (467)
T PRK09556        336 I----IFTLGVY--QHA---TS--EYMYLASLFALGFLV--FGPQLLIGVAAVG----FVPK---KAIGVANGIKGTFAY  395 (467)
T ss_pred             H----HHHHHHH--Hhc---Cc--HHHHHHHHHHHHHHH--hhHHHHHHHHHHh----hcch---hhHHHHHHHHHHHHH
Confidence            1    1111111  111   11  112233344444221  1111100 11113    3343   368899999988877


Q ss_pred             H-HHHHhHHHHHHHHh
Q 010361          303 L-CEIAGASLFGILLS  317 (512)
Q Consensus       303 ~-~kilGP~lgGlL~s  317 (512)
                      + ...++|.+.|.+..
T Consensus       396 l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        396 LFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHhHHHHhhhHHHHhc
Confidence            6 67899999999988

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.25  E-value=0.012  Score=61.40  Aligned_cols=150  Identities=18%  Similarity=0.070  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~  227 (512)
                      ...++...++..........-.|.++.. .+ +....+.......+..++.+...|.+.||.+||+.++.+-+...+   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~---  297 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILA---  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---
Confidence            4455665555554444444446777765 35 777788888888888899999999999999999988765433211   


Q ss_pred             HHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHH
Q 010361          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (512)
Q Consensus       228 ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kil  307 (512)
                       .  ++.+. ..    .+  .+.+++..++.+...........     .+++..+++   ++..++++....+..+...+
T Consensus       298 -~--~~~~~-~~----~~--~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~p~---~~~g~~~g~~~~~~~~g~~~  359 (406)
T PRK11551        298 -S--LAALA-AA----PS--FAGMLLAGFAAGLFVVGGQSVLY-----ALAPLFYPT---QVRGTGVGAAVAVGRLGSMA  359 (406)
T ss_pred             -H--HHHHH-hc----Cc--HHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHcch---hhhhhhhhHHHHhhhHHHHH
Confidence             1  11111 11    11  12223333333433222222222     122335554   36888999999999999999


Q ss_pred             hHHHHHHHHhhcc
Q 010361          308 GASLFGILLSKYE  320 (512)
Q Consensus       308 GP~lgGlL~s~~s  320 (512)
                      ||.++|.++...+
T Consensus       360 g~~~~g~l~~~~~  372 (406)
T PRK11551        360 GPLLAGQLLALGR  372 (406)
T ss_pred             HhhhHhhhhccCC
Confidence            9999999987644

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.22  E-value=0.029  Score=62.25  Aligned_cols=160  Identities=16%  Similarity=0.112  Sum_probs=110.9

Q ss_pred             CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          146 PEGLYALYA-CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       146 ~r~f~~L~~-g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++..+.+.. +-....++..++ --+|+++-...+ +....|++..+..+-.++-+...+.+-+|.++.+++..+-++.+
T Consensus       217 ~~~l~~~l~~~~~~~l~~~a~~-aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a  295 (524)
T PF05977_consen  217 SPPLRSVLLRSFLFNLFASAVW-ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA  295 (524)
T ss_pred             chHHHHHHHHHHHHHHhhhHHH-HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence            344444434 334444444444 347998887777 88888888888888889999999999999999888877765432


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +.      ++.+.  ..   .+  .+..++.+++.|.......+..+..+|+     .+++   +.+.|.+|..+.+...
T Consensus       296 ~~------~~~la--l~---~~--~~~~~~~l~l~G~~~~~~~~~~~t~~Q~-----~~P~---~~~GRv~si~~~~~~g  354 (524)
T PF05977_consen  296 LA------LLLLA--LS---PS--FWLALIALFLAGAAWIIANSSLNTLVQL-----SVPD---WVRGRVFSIYQMVFFG  354 (524)
T ss_pred             HH------HHHHh--cc---hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCH---HHHhHHHHHHHHHHHH
Confidence            21      11111  11   11  1233445556777777777777777776     4554   4899999999999999


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHH
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKF  327 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~  327 (512)
                      +.-+|..++|.+...+|....+.+
T Consensus       355 ~~~lGsll~G~la~~~g~~~al~~  378 (524)
T PF05977_consen  355 GMPLGSLLWGFLADHFGVRTALLI  378 (524)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHH
Confidence            999999999999999887665544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.21  E-value=0.027  Score=58.77  Aligned_cols=155  Identities=6%  Similarity=-0.072  Sum_probs=97.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +++.++.+....++...+......-.|.++.+..-+...+|.+.....+..++.....|++.||+++|+++..+-++..+
T Consensus       203 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~  282 (382)
T PRK11128        203 KEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVV  282 (382)
T ss_pred             cChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            56777877777777777766555666778766333777788887788888899999999999999999998776543222


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH-HH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID-LL  303 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id-l~  303 (512)
                          .  .+...  ..   ++  .+.+++..++.|....++.+....-+.+     . ++   .+..++.+.....+ ..
T Consensus       283 ----~--~~~~~--~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~-----~-~~---~~~~~~~~~~~~~~~~~  340 (382)
T PRK11128        283 ----R--WGLMG--ST---TA--LPWLIVIQILHCGTFTVCHLAAMRYIAA-----R-PG---SEVIRLQALYSALAMGG  340 (382)
T ss_pred             ----H--HHHHH--hh---hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----C-CH---hhhHHHHHHHHHHHHHH
Confidence                1  11111  11   11  1223334445565555555544433322     2 12   24566666665443 34


Q ss_pred             HHHHhHHHHHHHHhhcch
Q 010361          304 CEIAGASLFGILLSKYEP  321 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~  321 (512)
                      ...+||.++|.++..++.
T Consensus       341 g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        341 SIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHhccH
Confidence            558999999999998764

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.21  E-value=0.0061  Score=65.39  Aligned_cols=137  Identities=14%  Similarity=0.018  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 010361          167 NFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSS  245 (512)
Q Consensus       167 ~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~  245 (512)
                      ..-+|.++....+ +...++.+.....+..++.++..|.+.||++||+++..+.++..+.    ... +.  ....  ..
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~----~~~-~~--~~~~--~~  365 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLL----IIP-VF--AIGG--AN  365 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH----HHH-Hh--hccc--cH
Confidence            3456777765666 8888888888888889999999999999999999887765443221    111 11  1111  11


Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh
Q 010361          246 MLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPV  322 (512)
Q Consensus       246 ~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~  322 (512)
                        .+...+..++.+............     ++....++   ++..++++....+..+...+||.++|.+...++..
T Consensus       366 --~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~  432 (496)
T PRK03893        366 --VWVLGLLLFFQQMLGQGISGLLPK-----LIGGYFDT---EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG  432 (496)
T ss_pred             --HHHHHHHHHHHHHHhcccchhhHH-----HHHhhCCH---HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH
Confidence              111111222222211111111111     12224443   37888999999999999999999999999877644

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.16  E-value=0.019  Score=61.47  Aligned_cols=158  Identities=15%  Similarity=0.057  Sum_probs=91.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc--CChhHHHH-HHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYIC-LNT  220 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~--~Rr~vmi~-~dl  220 (512)
                      +++.++.++...++..........-+|.|+....+ +...++.+.....+..++..+..|.+.||+  +||+.... .-.
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~  330 (452)
T PRK11273        251 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT  330 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence            45667777778777776666667788999988777 777788877777788888899999999998  44433221 111


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhh-hhhcccceeEecCCCchhHHHHHHHHHHH
Q 010361          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALG-VAVERDWAVLLAGINRPIALAKANAVLNR  299 (512)
Q Consensus       221 vq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~-iaverdWVp~Lv~~~~~~~L~~aNs~l~~  299 (512)
                      +      ..+.++.+.  ... ...  .+.+.+.+++.+..  ....... .++-.|    .+++   +...++++....
T Consensus       331 l------~~~~~~~~~--~~~-~~~--~~~~~~~~~~~g~~--~~~~~~~~~~~~~~----~~p~---~~~g~~~g~~~~  390 (452)
T PRK11273        331 L------VTIATIVYW--LNP-AGN--PTVDMACMIVIGFL--IYGPVMLIGLHALE----LAPK---KAAGTAAGFTGL  390 (452)
T ss_pred             H------HHHHHHHHH--Hhc-ccC--hHHHHHHHHHHHHH--HHhHHHHHHHHHHH----HcCh---hhhhhHHHHHHH
Confidence            1      111111111  111 011  11112222223321  1111111 111112    3443   367888888888


Q ss_pred             HHHHHH-HHhHHHHHHHHhhcchh
Q 010361          300 IDLLCE-IAGASLFGILLSKYEPV  322 (512)
Q Consensus       300 Idl~~k-ilGP~lgGlL~s~~s~~  322 (512)
                      +..++. +.||.++|.+....|..
T Consensus       391 ~~~~g~~~~g~~v~g~l~~~~g~~  414 (452)
T PRK11273        391 FGYLGGSVAASAIVGYTVDFFGWD  414 (452)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhcch
Confidence            777765 56899999999877643

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.019  Score=63.43  Aligned_cols=241  Identities=17%  Similarity=0.107  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHH
Q 010361          184 VAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVER  263 (512)
Q Consensus       184 vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~  263 (512)
                      -+....+-.+.++++-.+.|.+.||+|-.+.|..+.++-.+...+.+    +   ..    +  .+.+.++=+++|.+|.
T Consensus        83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~----~---~~----s--~~~~ialr~llGl~es  149 (495)
T KOG2533|consen   83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTA----A---VH----S--FPGLIALRFLLGLFES  149 (495)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHH----H---Hh----h--hHHHHHHHHHHHHHhc
Confidence            45566667889999999999999999977777777754322111110    1   11    1  1234455568899888


Q ss_pred             HHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh------hcchhhHHHHHHHHHHHHHH
Q 010361          264 LTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS------KYEPVTCLKFAAGLIMWSLP  337 (512)
Q Consensus       264 l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s------~~s~~~~i~~~~~~~~~s~~  337 (512)
                      ..-++...-+. .|-    ++   +++..-=+..-.-.++++++|.+++..++.      ..|-..-..+..   +++++
T Consensus       150 ~~wP~~~~~lg-~wy----~~---~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G---~i~~~  218 (495)
T KOG2533|consen  150 GGWPGVVAILG-NWY----GK---SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG---VITLV  218 (495)
T ss_pred             ccchHHHHHHH-hhc----Ch---hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH---HHHHH
Confidence            88877654433 342    22   256655566666666777777777766543      112111111111   22222


Q ss_pred             HHHHHHHHHHhhccccccccccccc------cCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHH-HHHHHHHH
Q 010361          338 VMIILTWFTNKISSGVLDRAKCSQS------CCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPAS-LAYVLLCL  410 (512)
Q Consensus       338 s~~ll~~~i~rv~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~as-la~alL~~  410 (512)
                      ..++..+.+.  .+|+-.+-.++++      ..++  +.+....++       --..+++.-+++|...+. +...+...
T Consensus       219 ~gi~~f~~lp--~~P~~~~fl~~~ek~~~~~~~~~--~~~~~~~~~-------~~~~~~~~a~~dp~vw~~~l~~~~~~l  287 (495)
T KOG2533|consen  219 LGIVVFFFLP--DNPSKAWFLTDEEKELVVERLRE--SPSGGIENK-------FKWKGFKEALKDPGVWPFSLCYFFLKL  287 (495)
T ss_pred             HHheEEEEec--CChhhccccchHHHHHHHHHHHh--ccCCCcccc-------cCHHHHHHHHhchhHHHHHHHHHHHhh
Confidence            2221111111  0111000000000      0000  000001000       113466777789966553 33322222


Q ss_pred             HhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          411 NVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       411 tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                       +.-++....+.|+++ .|+|..+.+.+.....++|++|+++++.+..|++
T Consensus       288 -v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  288 -VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             -ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence             212366678888887 6799999999999999999999999999999976

>PRK09848 glucuronide transporter; Provisional

Probab=97.08  E-value=0.03  Score=59.80  Aligned_cols=160  Identities=12%  Similarity=0.034  Sum_probs=99.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +||.|..+....++...+-..+....|.++....+ +....+++.....+..++.++..|.+.||+++|+++...-++..
T Consensus       226 ~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~  305 (448)
T PRK09848        226 RNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGT  305 (448)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            78889888888888888877777777777776666 55544444444456678889999999999999999887765432


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCc----hhHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINR----PIALAKANAVLNR  299 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~----~~~L~~aNs~l~~  299 (512)
                      +    .+.+..+   ...  .+  .+.+++..++.+..+....+... ++..|    +++.++    .++-...++...-
T Consensus       306 i----~~~~~~~---~~~--~~--~~~~~~~~~l~g~G~~~~~~~~~-al~~~----~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        306 C----GYLLFFW---VSV--WS--LPVALVALAIASIGQGVTMTVMW-ALEAD----TVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             H----HHHHHHH---cCc--hh--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hhhhhHHhhCccchhHHHHHHHH
Confidence            2    1112111   111  11  12223333344444444444333 23233    443320    0123556788888


Q ss_pred             HHHHHHHHhHHHHHHHHhhcc
Q 010361          300 IDLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       300 Idl~~kilGP~lgGlL~s~~s  320 (512)
                      .+.++..+||.+.|.+++..|
T Consensus       370 ~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        370 TRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            888999999999999987654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.07  E-value=0.006  Score=64.10  Aligned_cols=159  Identities=16%  Similarity=0.055  Sum_probs=96.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +++.++.+....++..++...+..-.+.+.....++....+.+.....++.++..+..|.++||++||+++..+-++..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       220 KNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL  299 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            67788888888888887776665544555444444444566666667888999999999999999999988776543322


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCC----chhHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGIN----RPIALAKANAVLNRI  300 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~----~~~~L~~aNs~l~~I  300 (512)
                          ...+  ..+ ..   ++  .+.+++..++.+.............+ .|    +++.+    .+++-..+++.....
T Consensus       300 ----~~~~--~~~-~~---~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~G~~~~~~~~~  362 (437)
T TIGR00792       300 ----GYLI--FFF-AG---SN--LPLILVLIILAGFGQNFVTGLVWALV-AD----TVDYGEWKTGVRAEGLVYSVRTFV  362 (437)
T ss_pred             ----HHHH--HHH-cc---hh--HHHHHHHHHHHHHHHHHHHHHHHHHH-hh----hhhhhhhhcCccchHHHHHHHHHH
Confidence                1111  111 11   11  11222333333333333332222221 22    33211    012456778888888


Q ss_pred             HHHHHHHhHHHHHHHHhhcc
Q 010361          301 DLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       301 dl~~kilGP~lgGlL~s~~s  320 (512)
                      +.++..+||.++|.+++..|
T Consensus       363 ~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       363 RKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999987654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.03  E-value=0.033  Score=61.02  Aligned_cols=245  Identities=17%  Similarity=0.198  Sum_probs=118.6

Q ss_pred             HHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHH-HHHHHHHHHhHh
Q 010361          190 FSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLV-LAGAVERLTGVA  268 (512)
Q Consensus       190 ~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~-llg~i~~l~sva  268 (512)
                      ...+..++.+|..|.+.||+.||..+...-...-+.    ..+..+.            ..|+.+.. +.|......+..
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~----~~~~~~~------------~~~~~~~~~l~g~~~~~~s~~  133 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILP----ALCLLFQ------------GYWFFLLLGLSGGFSAIFSVG  133 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHh----HHHHHHH------------HHHHhhhcccccchhhhhhhh
Confidence            447788999999999999999998876665432111    1111110            01222211 222222222222


Q ss_pred             hhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010361          269 LGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNK  348 (512)
Q Consensus       269 ~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~r  348 (512)
                      +      +++.-++.+   +.-...=+.+...=.....+||+++|.+.-..|......+    ...+.....+  +.  .
T Consensus       134 ~------a~vadis~~---~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~i----a~~~~~~~~~--y~--~  196 (463)
T KOG2816|consen  134 F------AYVADISSE---EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLI----AAASGILSLL--YM--L  196 (463)
T ss_pred             h------hheeeccch---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHH----HHHHHHHHHH--HH--h
Confidence            1      222234443   2233333333333334679999999999887663222212    2222211111  11  1


Q ss_pred             hcccc-ccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhh---hcCcchhHH-HHHHHHHHHhhhhhhHHHHHH
Q 010361          349 ISSGV-LDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEY---MQQPVLPAS-LAYVLLCLNVVLTPGSLMTAF  423 (512)
Q Consensus       349 v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y---~~qpvl~as-la~alL~~tvll~~~~l~v~y  423 (512)
                      +-.|| ++.++.+...+++.    .++.     ....+..+-++.+   -++|..+.. +...+++.....+.......|
T Consensus       197 ~~l~Esl~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~y  267 (463)
T KOG2816|consen  197 LFLPESLQEKERSDATLREL----TPGS-----LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLY  267 (463)
T ss_pred             hccccccCcccccccccccc----CCCc-----ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEE
Confidence            11132 22111110001000    0010     0111222222222   234444442 222344444311122133556


Q ss_pred             HHH-hCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHhhChhhHHHHHHHHHHHHH
Q 010361          424 LTQ-RGLNPSIIGGFSGLCASMGVAATF-LSAYLVRRLGILKAGAAGLIFQASLL  476 (512)
Q Consensus       424 l~~-lGls~~~iG~~~g~gavgGLlGt~-lap~L~rRlG~~ragl~~l~~Q~~~L  476 (512)
                      ++. .|.++..++.+.+....-+..+-+ ..|.+.+.+|..+....|++.+..++
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~  322 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQL  322 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHH
Confidence            664 799999999888888777776555 45588999999988778877776644

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.01  E-value=0.053  Score=57.16  Aligned_cols=156  Identities=15%  Similarity=0.073  Sum_probs=92.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQL-WNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri-~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +++.++.++...++...+... ..+-.|++... .+ +....+.......+..++.+...|.+.||..|+.++. ..++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~-~~~~~  291 (394)
T PRK10213        214 QRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL-AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAG-APLVL  291 (394)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH-HHHHH
Confidence            566677766665555544433 33445777644 35 7777777666667777888889999999965443333 32221


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+   ..+.+  .. ..    .+  .+.+++..++.|....+..+..+..+++.     +++    +..++++.......
T Consensus       292 ~~---~~~~l--~~-~~----~~--~~~~~~~~~l~G~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~  350 (394)
T PRK10213        292 AV---SALVL--TL-WG----SD--KIVATGVAIIWGLTFALVPVGWSTWITRS-----LAD----QAEKAGSIQVAVIQ  350 (394)
T ss_pred             HH---HHHHH--HH-Hh----hh--HHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----Ccc----cHHHHHHHHHHHHH
Confidence            11   11111  11 11    11  12233444455666666666666555553     332    45577777777888


Q ss_pred             HHHHHhHHHHHHHHhhcchhh
Q 010361          303 LCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~~~  323 (512)
                      .+..+||.++|.+++..+...
T Consensus       351 lg~~~G~~l~G~l~~~~g~~~  371 (394)
T PRK10213        351 LANTCGAAIGGYALDNIGLTS  371 (394)
T ss_pred             HHHHHHHHHHHHHHhccChhh
Confidence            899999999999999776544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.99  E-value=0.015  Score=59.73  Aligned_cols=149  Identities=18%  Similarity=0.069  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHH
Q 010361          152 LYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSA  230 (512)
Q Consensus       152 L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~  230 (512)
                      +........+.......-.|.++....+ +....+.......+..++..+..|.+.||++||+.+..+-++...    .+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~----~~  318 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL----LI  318 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH----HH
Confidence            3333333344443444446777766667 888888888888888899999999999999999988766543211    11


Q ss_pred             HHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHH
Q 010361          231 AMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGAS  310 (512)
Q Consensus       231 ~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~  310 (512)
                       +....  ..   .+  .+.+.+..++.+.+.........     .++...+++   ++..++++....+..+...+||.
T Consensus       319 -~~~~~--~~---~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~  382 (405)
T TIGR00891       319 -IPVFA--IG---AN--VAVLGLGLFFQQMLVQGIWGILP-----KHLGEYFPT---DQRAAGLGFTYQLGNLGGALAPI  382 (405)
T ss_pred             -HHHHH--hC---Cc--hHHHHHHHHHHHHHHccchhhHH-----HHHhhhCCc---chhHHHhhHHHHHHHHHHHHHHH
Confidence             11111  11   11  11122222222222111111111     123335554   37889999999999999999999


Q ss_pred             HHHHHHhhcc
Q 010361          311 LFGILLSKYE  320 (512)
Q Consensus       311 lgGlL~s~~s  320 (512)
                      ++|.+....|
T Consensus       383 ~~g~l~~~~g  392 (405)
T TIGR00891       383 IGALLAQRLD  392 (405)
T ss_pred             HHHHHHHhcc
Confidence            9999998765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=96.99  E-value=0.027  Score=65.09  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHH
Q 010361          185 AVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERL  264 (512)
Q Consensus       185 av~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l  264 (512)
                      .+..+...+..++...++|.++||++||+++..+-++.++.    +.+  +.+ ..    +  ...++++.++.+.....
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~----~ll--~~~-~~----s--~~~ll~~~~l~g~~~~~  664 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS----CFF--LSF-GN----S--ESAMIALLCLFGGLSIA  664 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHH--HHH-Hc----c--HHHHHHHHHHHHHHHHH
Confidence            44456667888999999999999999999988776553221    111  111 11    1  11122222233332222


Q ss_pred             HhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 010361          265 TGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY  319 (512)
Q Consensus       265 ~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~  319 (512)
                      +..... ++-.+    +.+.   +...++.+.....-.++.++||.++|.++...
T Consensus       665 ~~~~~~-a~~aE----l~Pt---~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~  711 (742)
T TIGR01299       665 AWNALD-VLTVE----LYPS---DKRATAFGFLNALCKAAAVLGILIFGSFVGIT  711 (742)
T ss_pred             HHHHHH-HHHHH----HcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222222 12223    4443   36788999999999999999999999988753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.96  E-value=0.067  Score=55.84  Aligned_cols=154  Identities=10%  Similarity=-0.070  Sum_probs=98.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++++++.+....++-..+.....--.|+++.+ .+ +...++..-....+..++..+..|++.||+++|+++..+-+...
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACV  281 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence            67788888888888788877777777888877 55 88888888888899999999999999999999998876654322


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHH-HHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR-IDL  302 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~-Idl  302 (512)
                      +-      .+.... .    ++  .+.++...++-++...++.++...-++     .. ++   ++..++=+.... .-.
T Consensus       282 ~~------~~~~~~-~----~~--~~~~~~~q~l~g~~~~~~~~~~~~~i~-----~~-~~---~~~~~~q~~~~~~~~g  339 (382)
T TIGR00902       282 GR------WAIIGA-I----EA--FPLIFLLQILHCGTFAVCHLAAMRYIA-----AQ-PG---SEIAKLQALYNALAMG  339 (382)
T ss_pred             HH------HHHHHh-H----hh--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hC-CH---hhHHHHHHHHHHHHHH
Confidence            11      111111 1    11  122344444555555555544332222     12 22   122333232222 234


Q ss_pred             HHHHHhHHHHHHHHhhcch
Q 010361          303 LCEIAGASLFGILLSKYEP  321 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~  321 (512)
                      +...+||.++|.++..++.
T Consensus       340 ~g~~~g~~~~G~l~~~~g~  358 (382)
T TIGR00902       340 GLIAIFTAFAGFIYPTLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHHhccH
Confidence            6778999999999998875

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=96.93  E-value=0.04  Score=57.28  Aligned_cols=143  Identities=13%  Similarity=-0.055  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          160 NLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTV  239 (512)
Q Consensus       160 ~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~  239 (512)
                      ..+......-.|.+..+..-+  ..+.......+..++..+..|.+.||++|||.+..+-.+..+.    ..+  .. ..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~----~~~--~~-~~  299 (392)
T PRK12382        229 GVGFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVG----LLL--LW-LA  299 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHH----HHH--HH-Hc
Confidence            334333434445555443212  2233333345556778899999999999999887765543221    111  11 11


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 010361          240 IPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY  319 (512)
Q Consensus       240 ~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~  319 (512)
                      +    +  .+.+++..++.+.......+.....+.+     ..++   ++..++++.......++..+||.++|.+....
T Consensus       300 ~----~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~-----~~~~---~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~  365 (392)
T PRK12382        300 P----T--AWVALAGAALTGAGCSLIFPALGVEVVK-----RVPS---QVRGTALGGYAAFQDIAYGVSGPLAGMLATSF  365 (392)
T ss_pred             c----c--HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1    1  1122233333444333333322222221     2333   37889999999999999999999999999877


Q ss_pred             chhhHH
Q 010361          320 EPVTCL  325 (512)
Q Consensus       320 s~~~~i  325 (512)
                      |.....
T Consensus       366 g~~~~~  371 (392)
T PRK12382        366 GYPSVF  371 (392)
T ss_pred             CchHHH
Confidence            654433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.89  E-value=0.073  Score=58.44  Aligned_cols=168  Identities=13%  Similarity=0.049  Sum_probs=110.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCCh--hHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRI--PAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr--~vmi~~dlv  221 (512)
                      +.|+..++.++.++-+=|-....--..+|+....+ |.....+++++..+..++.+...|.+.||++-|  ++++.+.++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL  358 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            55677778888888776666666666788888888 999999999999999999999999999999888  666666543


Q ss_pred             HHHHHHHHHHHHHHHHh-hcccCCCch-hHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHT-VIPTSSSML-LHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR  299 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~-~~~~~~~~l-~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~  299 (512)
                      -.+.     ++  +... ......+.. .+..++..++.|....-..     +..|...-.+.+++   +-.+--+--.-
T Consensus       359 ~~~i-----~~--~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q-----s~sRs~~~~LiP~g---~e~efFgly~i  423 (477)
T PF11700_consen  359 WIII-----PL--YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ-----SASRSLFSRLIPPG---REAEFFGLYAI  423 (477)
T ss_pred             HHHH-----HH--HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHhCCCc---hhhHHHHHHHH
Confidence            2111     11  1111 000000111 1223444444443322222     23344444477775   56888999999


Q ss_pred             HHHHHHHHhHHHHHHHHhhcch-hhHHHH
Q 010361          300 IDLLCEIAGASLFGILLSKYEP-VTCLKF  327 (512)
Q Consensus       300 Idl~~kilGP~lgGlL~s~~s~-~~~i~~  327 (512)
                      .+..+.++||++.|.+....+. ..++..
T Consensus       424 ~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  424 TGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            9999999999999999998763 344443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.85  E-value=0.083  Score=56.27  Aligned_cols=161  Identities=12%  Similarity=-0.043  Sum_probs=90.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc--CChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~--~Rr~vmi~~dlv  221 (512)
                      +++.++.+..+.++..+.......=.|.++....+ +....+.+.....+..++.....|.+.||+  +||+.+...-.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~  320 (434)
T PRK11663        241 LNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAA  320 (434)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHH
Confidence            34556666666665555444444456778766667 888888777777888899999999999998  333333222111


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      - .  ...... .+.  ...  .+  ...+++..+.+|....-........+ .+    ..++   ++-..+++..+...
T Consensus       321 ~-~--~~~~~~-~~~--~~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~---~~~g~~~g~~~~~~  382 (434)
T PRK11663        321 G-I--LLSVGS-LWL--MPF--AS--YVMQAACFFTIGFFVFGPQMLIGMAA-AE----CSHK---EAAGAATGFVGLFA  382 (434)
T ss_pred             H-H--HHHHHH-HHH--ccc--cc--HHHHHHHHHHHHHHHhhHHHHHHHHH-Hh----cccH---hhHHhHHHHHHHHH
Confidence            0 0  111111 111  111  11  11112222222321110000111111 12    2332   47889999999999


Q ss_pred             HHHHHHhHHHHHHHHhhcchhh
Q 010361          302 LLCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s~~~  323 (512)
                      .++..+||.+.|.+.+..|...
T Consensus       383 ~~g~~~~p~~~g~l~~~~g~~~  404 (434)
T PRK11663        383 YLGAALSGYPLAKVLEIWHWTG  404 (434)
T ss_pred             HHHHHHhcccHHHHHHhcccHH
Confidence            9999999999999999776443

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.84  E-value=0.096  Score=57.25  Aligned_cols=77  Identities=14%  Similarity=0.059  Sum_probs=54.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHH-HHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMG-FFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       146 ~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~-~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      ++.++.+....++-.+++.....-.+-++....+ +...++.+. ....+..++.++..|.++||++|||.+...-+++
T Consensus       221 ~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~  299 (491)
T PRK11010        221 RNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ  299 (491)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4445555555566667766655445556656567 888888876 4666788999999999999999988776554444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.80  E-value=0.014  Score=62.05  Aligned_cols=79  Identities=19%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +||.+++++..+++..++..+..-..+.+.....++.-..+.+.....++.++..|+.+.++||++||+++..+-++..
T Consensus       223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA  301 (428)
T ss_pred             ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence            7899999999999999999999988899998888844667888888899999999999999999999999998876643

>PRK09669 putative symporter YagG; Provisional

Probab=96.79  E-value=0.016  Score=61.96  Aligned_cols=161  Identities=11%  Similarity=-0.008  Sum_probs=92.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          144 AHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       144 ~~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      .+|+.|+.+....++..++..+..-..+.+.....+..-..+.+.....++.++..++.|.+.||++||+.++...++..
T Consensus       226 ~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~  305 (444)
T PRK09669        226 LGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFV  305 (444)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            37888999999888888877666543333333333333333445556677778888899999999999999887654322


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCch---h-HHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRP---I-ALAKANAVLNR  299 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~---~-~L~~aNs~l~~  299 (512)
                      +     +.+..+  ....  ++  .+.+++..++.+.......+... ++-.|    +++.++.   + .-....+...-
T Consensus       306 ~-----~~~~~~--~~~~--~~--~~~~~~~~~i~g~~~~~~~~~~~-am~ad----~~d~~e~~~G~r~~g~~~s~~~~  369 (444)
T PRK09669        306 I-----LSALIF--FIPP--SN--VWLIFALNILFNFIQNLTTPLQW-SMFSD----VVDYEEKRSGRRLDGLVFSTNLF  369 (444)
T ss_pred             H-----HHHHHH--HhCc--ch--HHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhhhhhhhcCcCcchHHHHHHHH
Confidence            1     111111  1111  11  12223333344444444433332 22223    5542210   0 11123566677


Q ss_pred             HHHHHHHHhHHHHHHHHhhcc
Q 010361          300 IDLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       300 Idl~~kilGP~lgGlL~s~~s  320 (512)
                      ...++..+||.++|.+++..|
T Consensus       370 ~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        370 AIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            778899999999999988764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.78  E-value=0.094  Score=55.11  Aligned_cols=155  Identities=14%  Similarity=-0.022  Sum_probs=95.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+....++...+......-+|.++.+ .+ +....+.+.....+..++..+..|.+.||.+||++++..-.+..
T Consensus       203 ~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~  281 (393)
T PRK09705        203 FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQL  281 (393)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            45566666666666667766666667888776 56 88888888888888889999999999999999998877654432


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +    .+.+..+   ...   +  ...++..+..++.. ...........+      ..++  +++..++.+.++..-.+
T Consensus       282 ~----~~~~~~~---~~~---~--~~~~~~~l~g~g~g-~~~~~~~~~~~~------~~~~--~~~~g~~~g~~~~~~~~  340 (393)
T PRK09705        282 V----GFCGFIW---LPL---Q--LPVLWAMVCGLGLG-GAFPLCLLLALD------HSVQ--PAIAGKLVAFMQGIGFI  340 (393)
T ss_pred             H----HHHHHHH---ccc---h--HHHHHHHHHHHhcc-chHHHHHHHHHh------hcCC--HHHHHHHHHHHHHHHHH
Confidence            2    1111111   111   1  01111111111111 111111111121      2222  13567788888888888


Q ss_pred             HHHHhHHHHHHHHhhcch
Q 010361          304 CEIAGASLFGILLSKYEP  321 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~  321 (512)
                      +..+||.++|.+.+..|.
T Consensus       341 ~~~~gp~~~G~l~~~~g~  358 (393)
T PRK09705        341 IAGLAPWFSGVLRSISGN  358 (393)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            899999999999997764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.72  E-value=0.027  Score=56.83  Aligned_cols=159  Identities=15%  Similarity=0.045  Sum_probs=95.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc-CChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-~Rr~vmi~~dlvq  222 (512)
                      +++.++.+....++...+......-.|.++....+ +....+.+.....+..++..+..|.+.||. +||+.....-.. 
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~-  292 (379)
T TIGR00881       214 LNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFM-  292 (379)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHH-
Confidence            45667778888887777777777778888887777 888888888888888889999999999985 344333222111 


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      ..   ..+.+...  .... ..+  ....++..++.|........... .+..+    .+++   ++..++++.......
T Consensus       293 ~~---~~~~~~~~--~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~-~~~~~----~~~~---~~~g~~~g~~~~~~~  356 (379)
T TIGR00881       293 AL---IIVSLLVY--WLNP-AAN--PLMDLICLFALGFLVYGPQMLIG-VIASE----LAPK---KAAGTAAGFVGFFAY  356 (379)
T ss_pred             HH---HHHHHHHH--hcCc-chh--HHHHHHHHHHHHHHHhhhhHHHH-HHHHH----hcCc---chhHHHHHHHHHhhh
Confidence            00   11111111  1110 011  11112222233322111111111 11112    4444   368899999999999


Q ss_pred             HHHHHhHHHHHHHHhhcc
Q 010361          303 LCEIAGASLFGILLSKYE  320 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s  320 (512)
                      +...+||.+.|.+....|
T Consensus       357 ~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       357 LGGILAGLPLGYLADGFG  374 (379)
T ss_pred             hhhhhhhhhHHHHHHhhc
Confidence            999999999999988765

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.70  E-value=0.072  Score=55.86  Aligned_cols=134  Identities=7%  Similarity=-0.121  Sum_probs=78.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchh
Q 010361          169 AWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLL  248 (512)
Q Consensus       169 AlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~  248 (512)
                      -+|.++....-+....+.......+..++..+..|.+.||++||+++..+-++..+    .+..  .. ....  ..   
T Consensus       253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~----~~~~--~~-~~~~--~~---  320 (426)
T PRK12307        253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL----FIFP--LF-RIPQ--DN---  320 (426)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----HHHH--HH-HHcc--cc---
Confidence            45666665422766777776777778888899999999999999987766543211    1111  11 1111  11   


Q ss_pred             HHHHHHHHHHHHH--HHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhh
Q 010361          249 HPWFFVLVLAGAV--ERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       249 ~~l~~v~~llg~i--~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~  323 (512)
                       .+.+..++.+..  ..........     ++....++   +...++.+.....-.+...+||.++|.+....+...
T Consensus       321 -~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~---~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~  388 (426)
T PRK12307        321 -YLLLGACLFGLMATNVGVGGLVPK-----FLYDYFPL---EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA  388 (426)
T ss_pred             -HHHHHHHHHHHHHhcccHhHHHHH-----HHHHhCcH---HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence             111111122211  1000111111     11224444   367888998888888899999999999998777543

>TIGR00896 CynX cyanate transporter

Probab=96.61  E-value=0.082  Score=54.17  Aligned_cols=154  Identities=10%  Similarity=-0.025  Sum_probs=85.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc-CChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-~Rr~vmi~~dlvq  222 (512)
                      +++.++.+.....+..........-+|.++.+. + +....+.+.....+..++..+..|.+.||+ +||+++...-+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~  273 (355)
T TIGR00896       195 RSPLAWQVTVFFGLQSGLYYSLIGWLPAILISH-GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ  273 (355)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Confidence            455565554444454444444444568887664 5 888888888888888999999999999999 5666655544332


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+    +..+..+   ...  ..    .+. ..++.|.......+.....+..     ..++  +++-....+.++.+..
T Consensus       274 ~~----~~~~~~~---~~~--~~----~~~-~~~l~g~~~g~~~~~~~~~~~~-----~~~~--~~~~g~~~~~~~~~~~  332 (355)
T TIGR00896       274 LV----GLCGLLF---APM--HG----LWA-WALVLGLGQGGAFPLALTLIGL-----RSRQ--AAQAAALSAMAQSIGY  332 (355)
T ss_pred             HH----HHHHHHH---hhh--hH----HHH-HHHHHHHhhhhHhHHHHHHHHH-----hccC--HHHHHHHHHHHHHHHH
Confidence            22    1111111   111  11    111 1223333332222211111110     1111  2244556666777777


Q ss_pred             HHHHHhHHHHHHHHhhcc
Q 010361          303 LCEIAGASLFGILLSKYE  320 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s  320 (512)
                      +...+||.++|.+.+..+
T Consensus       333 ~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       333 LLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            778899999999988654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.59  E-value=0.15  Score=53.10  Aligned_cols=145  Identities=14%  Similarity=-0.069  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 010361          157 LAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHA  236 (512)
Q Consensus       157 ~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~  236 (512)
                      .+..++......-+|++..+..-+  ..+.......+..++..+..|.+.||++||+++...-++..+    ...+  ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~----~~~~--~~  297 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEIL----GLLL--LW  297 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----HHHH--HH
Confidence            333444444444455555443211  122222333445566678899999999999987766544322    1111  11


Q ss_pred             HhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010361          237 HTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILL  316 (512)
Q Consensus       237 ~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~  316 (512)
                      . .    .+  .+.+++..++.|.......+.....+. +    .+++   ++..++.+.+.....+...++|.+.|.+.
T Consensus       298 ~-~----~~--~~~~~~~~~l~G~~~~~~~~~~~~~~~-~----~~~~---~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  362 (399)
T PRK05122        298 L-A----PS--PWMALIGAALTGFGFSLVFPALGVEAV-K----RVPP---QNRGAALGAYSVFLDLSLGITGPLAGLVA  362 (399)
T ss_pred             H-h----cc--HHHHHHHHHHHHHhHHHHHHHHHHHHH-H----hCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1    11  112233333444433333322222111 1    2333   37889999999888888889999999998


Q ss_pred             hhcchhhH
Q 010361          317 SKYEPVTC  324 (512)
Q Consensus       317 s~~s~~~~  324 (512)
                      ...+....
T Consensus       363 ~~~g~~~~  370 (399)
T PRK05122        363 SWFGYPSI  370 (399)
T ss_pred             HHcCHHHH
Confidence            87765443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.56  E-value=0.11  Score=61.99  Aligned_cols=152  Identities=17%  Similarity=0.043  Sum_probs=99.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh-HHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLL-PVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll-~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +++.++.+.++.++..+...+....+|.++....+ +.. ..+++.....+..++.+.+.|.+.||..+++++...-++-
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~  309 (1146)
T PRK08633        230 SDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGL  309 (1146)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHH
Confidence            45666766677777777777777788888888777 766 7888888888888999999999999999888766543322


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+    +  ++.+. ...    +  .+.+++..++.|.......+..+..++.     .++++   ...++++....+..
T Consensus       310 ~~----~--~~~~~-~~~----~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~p~~---~rg~~~~~~~~~~~  368 (1146)
T PRK08633        310 AL----S--LFLLP-TAP----S--LASVLVLFFLFGFSAGLFIVPLNALIQF-----RAPEK---ELGKVLAANNFLQN  368 (1146)
T ss_pred             HH----H--HHHHH-Hhh----h--HHHHHHHHHHHHHHHHHhhHHHHHHHhh-----cCCcc---chhhhhHHHHHHHH
Confidence            11    1  11111 111    1  1222333444555555544444433322     44442   67888888888888


Q ss_pred             HHHHHhHHHHHHHHh
Q 010361          303 LCEIAGASLFGILLS  317 (512)
Q Consensus       303 ~~kilGP~lgGlL~s  317 (512)
                      +..+++|.+++++..
T Consensus       369 lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        369 VGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888889988887765

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.52  E-value=0.1  Score=54.58  Aligned_cols=159  Identities=8%  Similarity=0.017  Sum_probs=87.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLH---P-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~---~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dl  220 (512)
                      ++++++.+....+.....-.......|.|+....   + +....+.+.....+..++.....|.+.||.+||+++...-+
T Consensus       213 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~  292 (396)
T TIGR00882       213 RQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGT  292 (396)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            5666666655555544444445555777776654   3 45566777777788888889999999999999998766543


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHH-HHH
Q 010361          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV-LNR  299 (512)
Q Consensus       221 vq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~-l~~  299 (512)
                      +-.+      ..+.+.  ..   .+  .+.+++..++-+    ++........ -++++...+++   .-..+++. .+.
T Consensus       293 l~~l------~~~~~~--~~---~~--~~~~~~~~~l~g----~~~~~~~~~~-~~~~~~~~~~~---~~at~~~~~~~~  351 (396)
T TIGR00882       293 IMSV------RIIGSS--FA---TT--ALEVVILKMLHA----FEVPFLLVGC-FKYITSQFDVR---LSATIYLIGFQF  351 (396)
T ss_pred             HHHH------HHHHHH--hc---CC--hHHHHHHHHHHH----HHHHHHHHHH-HHHHHHhCCcc---eEEEeehHHHHH
Confidence            2111      111111  11   11  111122222222    2222221111 12222233321   12222333 445


Q ss_pred             HHHHHHHHhHHHHHHHHhhcchhhH
Q 010361          300 IDLLCEIAGASLFGILLSKYEPVTC  324 (512)
Q Consensus       300 Idl~~kilGP~lgGlL~s~~s~~~~  324 (512)
                      ...++.++||.++|.++...|....
T Consensus       352 ~~~lg~~~~~~l~G~l~~~~G~~~~  376 (396)
T TIGR00882       352 AKQLAMIFLSTLAGNMYDSIGFQGA  376 (396)
T ss_pred             HHHHHHHHHHHhHHHHHHhcccHHH
Confidence            7788999999999999998775443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.49  E-value=0.059  Score=57.65  Aligned_cols=69  Identities=12%  Similarity=0.081  Sum_probs=57.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChh
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIP  213 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~  213 (512)
                      +++.++.++..++...++......-+|.|+....+ +....+.+.....+..++.++.+|.+.||..||+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45667888888888888888777788999988877 8888888888888888999999999999976543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.45  E-value=0.076  Score=63.62  Aligned_cols=159  Identities=14%  Similarity=0.002  Sum_probs=104.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+.++.++..+.-......+|.|+...++ +....+.+..+..+..++.+...|.+.||..+++.+...-++-.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  302 (1140)
T PRK06814        223 ADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMG  302 (1140)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHH
Confidence            67788888888888777776777778999988887 88888888888888999999999999988776664443322211


Q ss_pred             HHHHHHHHHHHHHHhhc---c----------cCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHH
Q 010361          224 AAQLLSAAMIIHAHTVI---P----------TSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIAL  290 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~---~----------~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L  290 (512)
                      +.   .+.+ .+.....   .          ...+  .+.+++..+++|.......+.....+++     .++++   ..
T Consensus       303 ~~---~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~p~~---~~  368 (1140)
T PRK06814        303 LF---GLDL-AFASSSVPAEPAQLKSILVFLSKRH--GWRILIDLFGLAAAGGLYIVPLFAALQA-----WANPA---HR  368 (1140)
T ss_pred             HH---HHHH-Hhcccccccccccccchhhhhcccc--cHHHHHHHHHHHHHHHHhHHHHHHHHHh-----hCCcc---cc
Confidence            11   1111 1100000   0          0011  1222333445566555555555444443     45543   78


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 010361          291 AKANAVLNRIDLLCEIAGASLFGILLS  317 (512)
Q Consensus       291 ~~aNs~l~~Idl~~kilGP~lgGlL~s  317 (512)
                      .++.+..+.+..+...+||+++|.+..
T Consensus       369 G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        369 ARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999974

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.37  E-value=0.093  Score=55.92  Aligned_cols=161  Identities=14%  Similarity=0.062  Sum_probs=89.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCC-hhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPR-IPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~R-r~vmi~~dlvq  222 (512)
                      +++.++.+....++...+......-+|.++....+ +....+.+.....+..++..+..|.+.||+.| |+.+...-.. 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~-  327 (438)
T TIGR00712       249 PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFM-  327 (438)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHH-
Confidence            66677777777777666655555566888887777 88888888888888889999999999999843 3333222111 


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhh-hhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGV-AVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~i-averdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      ..   ..+..+.+  .... ..+.  +......+.++..  ........ ....+    ..++   +...++.+....+.
T Consensus       328 ~~---~~~~~~~~--~~~~-~~~~--~~~~~~~~~~g~~--~~~~~~~~~~~~~~----~~~~---~~~g~~~g~~~~~~  390 (438)
T TIGR00712       328 TL---VTIAVIVY--WMNP-AGNP--LVDMICMIVIGFL--IYGPVMLIGLHALE----LAPK---KAAGTAAGFTGLFG  390 (438)
T ss_pred             HH---HHHHHHHH--HhcC-CCch--HHHHHHHHHHHHH--HccHHHHHHHHHHH----hcCh---hheeeehhhhchHH
Confidence            00   01111111  1111 0111  1111222222221  11111111 11112    3333   25667888887776


Q ss_pred             HHH-HHHhHHHHHHHHhhcchhh
Q 010361          302 LLC-EIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       302 l~~-kilGP~lgGlL~s~~s~~~  323 (512)
                      ... ..+||.++|.+.+..+...
T Consensus       391 ~~gg~~~gp~l~G~l~~~~g~~~  413 (438)
T TIGR00712       391 YLGGSVAASAIVGYTVDFFGWDG  413 (438)
T ss_pred             HhhhhhhcchhHHHHHHhccchH
Confidence            665 5789999999998766433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.34  E-value=0.022  Score=57.12  Aligned_cols=145  Identities=19%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-hhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-S-LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-S-ll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +.++.++...++..+.......-.|.++....+ + ....+.+.....+..++.++..|.+.||.++++.+...-....+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  285 (352)
T PF07690_consen  206 PVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL  285 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            344557777777777888889999998766666 7 78888878888888888899999999999987776665443211


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~  304 (512)
                          ....  +. .... ..+  ....++..++.|.......+.....+.+     .++++   +..++++....+..++
T Consensus       286 ----~~~~--~~-~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~---~~g~~~g~~~~~~~~~  347 (352)
T PF07690_consen  286 ----GALG--LL-LLPF-SSS--PVWLIIALFLIGFGFGIVFPILFSLIQE-----LVPPE---YRGTAFGLFNSIGSLG  347 (352)
T ss_dssp             ----HHHH--HC-CSHH-HCH--HHHHHHHHHHHHHHHHHHCHHHHHHHHC-----CCHTC---HHHHHHHHHHHHHHHH
T ss_pred             ----HHHH--HH-HHHH-hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCHH---HHHHHHHHHHHHHHHH
Confidence                1111  10 0000 000  1112233445566555555555444433     55543   7899999999999999


Q ss_pred             HHHhH
Q 010361          305 EIAGA  309 (512)
Q Consensus       305 kilGP  309 (512)
                      .++||
T Consensus       348 ~~igP  352 (352)
T PF07690_consen  348 GIIGP  352 (352)
T ss_dssp             HHHHH
T ss_pred             HHHCC
Confidence            99988

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09952 shikimate transporter; Provisional

Probab=96.33  E-value=0.39  Score=51.35  Aligned_cols=148  Identities=13%  Similarity=0.006  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHH
Q 010361          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI  233 (512)
Q Consensus       155 g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li  233 (512)
                      ..+...++-.....-.|.|+....+ +...+...+....+..++..+..|.+.||++|||+++..-++..+    .... 
T Consensus       258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~----~~~~-  332 (438)
T PRK09952        258 LRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTL----SAFP-  332 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH----HHHH-
Confidence            3444444444444445556655555 554444455555666677788999999999999988766443211    1111 


Q ss_pred             HHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH-HHHHHHHhHHHH
Q 010361          234 IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI-DLLCEIAGASLF  312 (512)
Q Consensus       234 ~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I-dl~~kilGP~lg  312 (512)
                       +......  .+. ...+++..++.+........... +    +++.+.+.+   ....+++....+ ..+...++|.++
T Consensus       333 -~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~~-~----~~~e~~p~~---~r~tg~g~~~~~~~~lgg~~~p~i~  400 (438)
T PRK09952        333 -FFMALEA--QSI-FWIVFFSIMLANIAHDMVVCVQQ-P----MFTEMFGAS---YRYSGAGVGYQVASVVGGGFTPFIA  400 (438)
T ss_pred             -HHHHHHc--CCh-HHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHCCcc---hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence             1111111  110 11111112222222222222222 2    222255542   455566665444 346788999999


Q ss_pred             HHHHhhc
Q 010361          313 GILLSKY  319 (512)
Q Consensus       313 GlL~s~~  319 (512)
                      |.++...
T Consensus       401 g~l~~~~  407 (438)
T PRK09952        401 AALVTYF  407 (438)
T ss_pred             HHHHHhc
Confidence            9998744

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.30  E-value=0.4  Score=50.47  Aligned_cols=157  Identities=14%  Similarity=0.061  Sum_probs=95.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++......++.........+..|.++-...+ +....+.......+..++.++.+|++.||.++++++...-+.  
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~--  280 (393)
T PRK11195        203 RDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM--  280 (393)
T ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH--
Confidence            44555554444444444445566677777777777 888889888888888899999999999999888776554211  


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                           ....+...  ..   .+  .+.+.+..++.|....++.+..+..+++     ..+++  ....++.+..+..+++
T Consensus       281 -----~~~~~~~~--~~---~~--~~~~~~~~~~~G~~~g~~~~~~~~~~q~-----~~~~~--~~~g~~~a~~~~~~~~  341 (393)
T PRK11195        281 -----GLVVLLMA--LQ---HS--LLPAYPLLILIGALGGFFVVPMNALLQH-----RGHVL--VGAGHSIAVQNFNENL  341 (393)
T ss_pred             -----HHHHHHHH--HH---hH--HHHHHHHHHHHHHhhhhhhhhHHHHHHh-----hCccc--ccchhHHHHHhHHHHH
Confidence                 11111111  11   11  1112233335566555655555554543     22221  1257777888899999


Q ss_pred             HHHHhHHHHHHHHhhcchhh
Q 010361          304 CEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~  323 (512)
                      ...+|..+.+.+.. .+...
T Consensus       342 ~~~~~~~~~~~~~~-~~~~~  360 (393)
T PRK11195        342 AMLLMLGLYSLLVK-LGVPV  360 (393)
T ss_pred             HHHHHHHHHHHHHH-cCCCH
Confidence            99999999997744 55433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.27  E-value=0.42  Score=48.81  Aligned_cols=77  Identities=10%  Similarity=-0.059  Sum_probs=59.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      +++.++.+.....+...+-..+....|.+.....+ +...++.+.....+..++.+++.|.+.||++||+.+...-++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~  281 (385)
T TIGR00710       204 KSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLIL  281 (385)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            55667666666666666656666667888877777 888888888888888899999999999999999987765433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.25  E-value=0.36  Score=51.87  Aligned_cols=161  Identities=17%  Similarity=0.003  Sum_probs=94.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++..+..++-.++..-|.-+.--=+--++.+.++ |.-.++..-++..+..++-+..+|++.|| +.+++++...+..+
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a  287 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA  287 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence            44455555544444444432222112223455666 88889999999999999999999999999 77777777665543


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +.    ...+.+  . +   .+  .+..++.+++.+....-.-+.        |+..+++. .+++-..+.+.+...-++
T Consensus       288 ~~----~l~l~~--~-~---~~--~~~~~~~~~~wg~a~~~~~~~--------~~~~~a~~-~p~~~~~a~sl~~aa~nl  346 (394)
T COG2814         288 LA----LLALTF--T-G---AS--PALALALLFLWGFAFSPALQG--------LQTRLARL-APDAADLAGSLNVAAFNL  346 (394)
T ss_pred             HH----HHHHHH--h-c---ch--HHHHHHHHHHHHHHhhhhhhH--------HHHHhccc-CCCchHHHHHHHHHHHHH
Confidence            32    111111  1 1   11  112222222323222221111        23334441 123677889999999999


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHH
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKF  327 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~  327 (512)
                      ..-+|-.+||.++..+|.....++
T Consensus       347 gia~GA~lGG~v~~~~g~~~~~~~  370 (394)
T COG2814         347 GIALGAALGGLVLDALGYAATGWV  370 (394)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHH
Confidence            999999999999998775443333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=96.20  E-value=0.41  Score=49.73  Aligned_cols=77  Identities=5%  Similarity=-0.176  Sum_probs=52.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      +++.++.+.....+...+-..+....|.+.....+ +....+.+.....+..++..+..|.+.||++||++++..-+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~  278 (392)
T PRK10473        201 LNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVL  278 (392)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45555554444443333333333445666666667 777778777777888889999999999999999988766543

>PRK15075 citrate-proton symporter; Provisional

Probab=96.18  E-value=0.27  Score=52.30  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHH
Q 010361          167 NFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (512)
Q Consensus       167 ~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dl  220 (512)
                      ..-.|.|+....+ +....+.+.....+..++..+..|.+.||++||++++..-+
T Consensus       258 ~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~  312 (434)
T PRK15075        258 TVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTV  312 (434)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            3446777776666 77777777777777788889999999999999998776543

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.17  E-value=0.045  Score=57.74  Aligned_cols=78  Identities=14%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             hhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 010361          392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (512)
Q Consensus       392 ~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l  469 (512)
                      ++++||.++......++++.....+.+.+..|+++ .|+++.++|++.+..+++..++....+++.+|+|..|...++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            56788888776544444443323456788888886 8999999999999999999999999999999999998876543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.15  E-value=0.13  Score=53.46  Aligned_cols=143  Identities=11%  Similarity=-0.028  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCCCc
Q 010361          168 FAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIH-AHTVIPTSSSM  246 (512)
Q Consensus       168 FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~-~~~~~~~~~~~  246 (512)
                      +-.|.+.....-+....+.+.....+..++..+.+|.+.||.+||+.+...-++..+    ...++.+ ........+..
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  380 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI----CLFVLGILGASFVTGSSKS  380 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH----HHHHHHHHhhcccCCcccc
Confidence            334555443322666667777777777888899999999999999987766333211    1111110 01111100000


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch
Q 010361          247 LLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEP  321 (512)
Q Consensus       247 l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~  321 (512)
                      ....++....+.+............++    +..+.++   +...++++.......++.+++|.+.|.+....+.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~---~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~  448 (481)
T TIGR00879       381 SGNVAIVFILLFIAFFAMGWGPVPWVI----VSEIFPL---SLRPKGISIAVAANWLANFIVGFLFPTMLESIGV  448 (481)
T ss_pred             hhHHHHHHHHHHHHHHHccccCeehhh----hhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            011111111111111111111111111    1224443   3677899999999999999999999998876553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.11  E-value=3.4  Score=46.86  Aligned_cols=76  Identities=18%  Similarity=0.052  Sum_probs=51.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNF----AWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~F----AlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dl  220 (512)
                      +.+.+.-.+++..+...+..+-..    .++....++.++. ..+.+..+.++...+..|++|++.|.++||.+++...+
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~  116 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSL  116 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence            555666667777776666655443    2344445555532 22344455677788888999999999999999988875


Q ss_pred             H
Q 010361          221 V  221 (512)
Q Consensus       221 v  221 (512)
                      +
T Consensus       117 l  117 (599)
T PF06609_consen  117 L  117 (599)
T ss_pred             H
Confidence            4

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00898 2A0119 cation transport protein

Probab=96.05  E-value=0.19  Score=54.15  Aligned_cols=149  Identities=11%  Similarity=0.026  Sum_probs=77.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +++.++.......+..+...+..+++++++..+..+.....   +...+..+......|.++||++||+++...-++..+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~  397 (505)
T TIGR00898       321 RTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDL---FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGV  397 (505)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34556665555555555555666666666554444432222   223344455566678899999999998877654332


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHH-HHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGA-VERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~-i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                          ++.+..+   ...  ..  .+...+..++.+. ....+.....      +++.+.+.   +....+.+.......+
T Consensus       398 ----~~l~~~~---~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~e~~p~---~~r~~~~g~~~~~~~i  457 (505)
T TIGR00898       398 ----ALLLLLF---VPV--DL--YFLRTALAVLGKFGITSAFQMVYL------YTAELYPT---VVRNLGVGVCSTMARV  457 (505)
T ss_pred             ----HHHHHHH---cCC--Cc--hHHHHHHHHHHHHHHHHHHHHHHH------HhcccccH---HHHhhhHhHHHHHHHH
Confidence                1111111   111  11  0111111111111 1112222221      22335543   2566778888888888


Q ss_pred             HHHHhHHHHHHHHh
Q 010361          304 CEIAGASLFGILLS  317 (512)
Q Consensus       304 ~kilGP~lgGlL~s  317 (512)
                      +.++||.+.| +..
T Consensus       458 g~~i~p~i~~-~~~  470 (505)
T TIGR00898       458 GSIISPFLVY-LGE  470 (505)
T ss_pred             HHHHHhHHHH-HHH
Confidence            9999999999 443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.03  E-value=0.4  Score=49.15  Aligned_cols=79  Identities=9%  Similarity=-0.121  Sum_probs=60.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.+..+....++...+-..+....|.+.....+ +....+.+.....+..++.+++.|.+.||.+||+++...-+++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  271 (377)
T PRK11102        192 RHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF  271 (377)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            45556665566666666655555556777777667 88888988888889999999999999999999998887766543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.95  E-value=0.36  Score=50.96  Aligned_cols=154  Identities=11%  Similarity=-0.058  Sum_probs=80.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecc-cCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR-~~Rr~vmi~~dlvq~  223 (512)
                      +++.+..+....+.-.........-.|+++.+..++...++.+.....+..+++..+.+.+.|| ++.++.+..+-++..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  285 (400)
T PRK11646        206 RDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMS  285 (400)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4555655444333222222222345688887765555556665555555555555566777765 454544433322211


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +      .++...  ..   ++  .+.+.+..++.+.......+.....+. +    .++++   +..++.+..+....+
T Consensus       286 ~------~~~~l~--~~---~~--~~~~~~~~~l~~~g~~~~~p~~~~~~~-~----~~p~~---~~g~~~g~~~~~~~~  344 (400)
T PRK11646        286 L------SMFPIG--MV---SN--LQQLFTLICLFYIGSIIAEPARETLSA-S----LADAR---ARGSYMGFSRLGLAL  344 (400)
T ss_pred             H------HHHHHH--Hh---hh--HHHHHHHHHHHHHHHHHHHccHHHHHH-h----cCCcc---cchhhhhHHHHHHHH
Confidence            1      111111  11   11  112222223334333344333332222 2    45442   678888888888889


Q ss_pred             HHHHhHHHHHHHHhhc
Q 010361          304 CEIAGASLFGILLSKY  319 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~  319 (512)
                      ...+||.++|.+++..
T Consensus       345 g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        345 GGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HHHhcccchHHHHHHH
Confidence            9999999999998864

>PRK10429 melibiose:sodium symporter; Provisional

Probab=95.95  E-value=0.058  Score=58.36  Aligned_cols=163  Identities=13%  Similarity=0.004  Sum_probs=94.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      +|+.++.+....++...+..++.-..+.+.....++.-..+.+.....++.++..++.|.+.||++||++++.+-++..+
T Consensus       229 ~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        229 KNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVL  308 (473)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            77888888888888888887776555544444444444455666666678888899999999999999998766543221


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCch----hHHHHHHHHHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRP----IALAKANAVLNRI  300 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~----~~L~~aNs~l~~I  300 (512)
                          .+...++......  ..  .+.+++..++.+.......... .++-.|    +++.++-    ..-.-..+...-+
T Consensus       309 ----~~~~~~~~~~~~~--~~--~~~~~i~~~l~g~~~~~~~~~~-~am~ad----~id~~e~~tG~R~~G~~~s~~~~~  375 (473)
T PRK10429        309 ----SCGVLLLMGLAAP--HN--ALLIVIAGILLNIGTALFWVLQ-VIMVAD----TVDYGEYKLGIRCESIAYSVQTMV  375 (473)
T ss_pred             ----HHHHHHHHhccCc--hh--HHHHHHHHHHHHHHHHHHHHHH-HHHHhh----hhhhhhHhcCccchhHHHHHHHHH
Confidence                1111111101111  11  1122223333444333333322 222223    4443200    0112256777778


Q ss_pred             HHHHHHHhHHHHHHHHhhcc
Q 010361          301 DLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       301 dl~~kilGP~lgGlL~s~~s  320 (512)
                      +.++.-+||.+.|.+++..|
T Consensus       376 ~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        376 VKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            88888999999999987654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.93  E-value=3.2  Score=44.97  Aligned_cols=235  Identities=12%  Similarity=0.064  Sum_probs=114.7

Q ss_pred             HccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhccc
Q 010361          197 VGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERD  276 (512)
Q Consensus       197 l~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverd  276 (512)
                      .+-.+++-+-|..+.|++++..-+...+    .-.++++.       .++  ...-+.-++-|. ..-+.+++-     .
T Consensus        56 ~~l~~vflltd~l~Ykpviil~~~~~i~----t~~lll~~-------~sv--~~mq~~q~~yg~-~~a~evay~-----s  116 (412)
T PF01770_consen   56 AFLLPVFLLTDYLRYKPVIILQALSYII----TWLLLLFG-------TSV--LAMQLMQFFYGL-ATAAEVAYY-----S  116 (412)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHH-------CcH--HHHHHHHHHHHH-HHHHHHHHH-----H
Confidence            3344555678999999998776544322    11222221       121  111111111111 112222332     2


Q ss_pred             ceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc
Q 010361          277 WAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISS-GVLD  355 (512)
Q Consensus       277 WVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~-~~l~  355 (512)
                      |+=..+++   ++-.++-+..|..-++++++|-++|=++++..+.... -.+. +.+.+....++..+++.+..+ ...+
T Consensus       117 Yiys~v~~---~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~-~L~~-isl~~~~~a~~~~~fLP~~~~S~~f~  191 (412)
T PF01770_consen  117 YIYSVVDK---EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF-QLNY-ISLASVSLALLIALFLPMPKRSLFFH  191 (412)
T ss_pred             HheeecCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHH-HHHHHHHHHHHHHHHcCCCCccccee
Confidence            33446665   4899999999999999999999999988885443221 1111 111112122222233333211 0011


Q ss_pred             ccccc--------cccCCCCCC------CCCCCCcchhHHhHHHHHHhHhhhhcCcch-hHHHHHHHHHHHhhhhhhHHH
Q 010361          356 RAKCS--------QSCCRTSNE------GPVPDADNIVDVGIEAIKLGWKEYMQQPVL-PASLAYVLLCLNVVLTPGSLM  420 (512)
Q Consensus       356 ~~~~~--------~~~~~~~~~------~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl-~asla~alL~~tvll~~~~l~  420 (512)
                      +.++.        .+...+.++      ++.+..+....+.++.+...++.-+++|.+ +-++-.++-...    + .+.
T Consensus       192 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcg----y-~qv  266 (412)
T PF01770_consen  192 RKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCG----Y-YQV  266 (412)
T ss_pred             ccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhH----H-HHH
Confidence            11100        000000000      001111223345566677777777888854 445543332211    0 123


Q ss_pred             HHHHH----H---hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          421 TAFLT----Q---RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       421 v~yl~----~---lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                      ..|.+    +   .+-....-|.+.++..+.|-++++.++.+..+..
T Consensus       267 ~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~  313 (412)
T PF01770_consen  267 INYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD  313 (412)
T ss_pred             HHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence            33332    1   2445667788889988888889999999844433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.90  E-value=0.6  Score=49.66  Aligned_cols=75  Identities=12%  Similarity=0.129  Sum_probs=47.7

Q ss_pred             CCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHH
Q 010361          145 HPEGLYALYACCLAG-NLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLN  219 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS-~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~d  219 (512)
                      +++.++.+..+.++. .++-.....-+|.++....+ +.-.++.+.....+..++.++..|.+.||.+||+++...-
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~  316 (432)
T PRK10406        240 RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFG  316 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            344444443333332 34333344456777766666 7666666666556666788899999999999998776543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.89  E-value=0.32  Score=53.33  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQL-WNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri-~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      ++++.|++-.-.++ ++|.-+ ....+|.|....++. .......+...+...+..|.+|.+.||.+++|++...-++
T Consensus       250 k~~~~Wllslly~~-tFG~fvg~s~~lp~~~~~~~~~-~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~  325 (462)
T PRK15034        250 QRLHLWLLSLLYLA-TFGSFIGFSAGFAMLAKTQFPD-VNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIF  325 (462)
T ss_pred             CCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCh-HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHH
Confidence            55555554333333 444444 566889998887752 1122223445677888999999999999999998887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=95.88  E-value=0.72  Score=50.09  Aligned_cols=62  Identities=18%  Similarity=0.045  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHH
Q 010361          159 GNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (512)
Q Consensus       159 S~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dl  220 (512)
                      ..++-.....-+|.++....+ +....+.+.....+..++..+..|.+.||++||++++...+
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  324 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSV  324 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            334444555567777766666 65555655556666777888899999999999998776653

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.84  E-value=0.065  Score=44.25  Aligned_cols=54  Identities=28%  Similarity=0.332  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 010361          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (512)
Q Consensus       416 ~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l  469 (512)
                      +-..+..|++++|+++.++|++.++.-+..++++.+.+++.+|.|..|..+.+.
T Consensus        19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen   19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            334566677889999999999999999999999999999999999888765544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=95.79  E-value=1  Score=47.79  Aligned_cols=157  Identities=13%  Similarity=-0.021  Sum_probs=90.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+.....+...+-..+....|.++.+.++ +....+..........++.+...+.+.+|..++|.+.....+..
T Consensus       216 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (413)
T PRK15403        216 RNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQL  295 (413)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            66777777777777777766777778999988887 88888877666666667778888888866555554433322211


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhh-hhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVAL-GVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~-~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      +    ...+.........  +.  .+..++..++.+....+..+.. ..+    |    ...+  ...-++++..+.+..
T Consensus       296 i----g~~l~~~~~~~~~--~~--~~~~~~~~~l~~~G~~~~~p~~~~~a----l----~~~~--~~~G~a~a~~~~~~~  357 (413)
T PRK15403        296 V----GLALLIVGNLLWP--HV--WLWSVLGTSLYAFGIGLIFPTLFRFT----L----FSNN--LPKGTVSASLNMVIL  357 (413)
T ss_pred             H----HHHHHHHHHHHcc--cc--HHHHHHHHHHHHHHHHHHhHHHHHHH----h----ccCC--CCCcHHHHHHHHHHH
Confidence            1    1111111111111  11  1111223333333322322221 122    1    1111  135788999999999


Q ss_pred             HHHHHhHHHHHHHHhhc
Q 010361          303 LCEIAGASLFGILLSKY  319 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~  319 (512)
                      ...-.|+.++|.+.+..
T Consensus       358 ~~~~~~~~~~g~~~~~~  374 (413)
T PRK15403        358 MVMAVSVEIGRWLWFNG  374 (413)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            99999999999988763

>PRK10133 L-fucose transporter; Provisional

Probab=95.67  E-value=0.46  Score=51.12  Aligned_cols=152  Identities=5%  Similarity=-0.111  Sum_probs=85.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAI-ALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~-~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +++.++....+.++...++.....-.|.++ ...++ |....+.+-....+..++.....|.++||++||+++...-++.
T Consensus       256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~  335 (438)
T PRK10133        256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            456666655555555544442222345554 34567 8999998888888999999999999999999999887775432


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+      .+.... ..+    +.  ..++...+..-+....+-+.+..+.+.      .++    +-..+.+.+. ...
T Consensus       336 ~~------~~~~~~-~~~----~~--~~~~~~~l~glg~~~i~P~~~s~a~~~------~~~----~~~~as~l~~-~~~  391 (438)
T PRK10133        336 MA------LCLISA-FAG----GH--VGLIALTLCSAFMSIQYPTIFSLGIKN------LGQ----DTKYGSSFIV-MTI  391 (438)
T ss_pred             HH------HHHHHH-HcC----Ch--HHHHHHHHHHHHHHHHHHHHHHHHHcc------cch----hhccchhHHh-HHh
Confidence            11      111111 111    11  111122222222333444445455432      121    2334444443 444


Q ss_pred             HHHHHhHHHHHHHHhhcc
Q 010361          303 LCEIAGASLFGILLSKYE  320 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s  320 (512)
                      ....++|.+.|.+....|
T Consensus       392 ~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        392 IGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             ccchHHHHHHHHHHHhcc
Confidence            557888888888877655

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=95.67  E-value=1.5  Score=48.69  Aligned_cols=255  Identities=17%  Similarity=0.117  Sum_probs=128.7

Q ss_pred             ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHH-HHH
Q 010361          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVL-VLA  258 (512)
Q Consensus       180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~-~ll  258 (512)
                      +--+++..+.....-..+.||+++.+.||++.|++++.-.++..+..+++    .|+  .     +  .+.+++.. ++.
T Consensus        79 s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~ls----sF~--~-----~--i~~l~lt~gvi~  145 (509)
T KOG2504|consen   79 SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLS----SFA--T-----S--LWQLYLTFGVIG  145 (509)
T ss_pred             CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHH----HHH--h-----h--HHHHHHHHHHHh
Confidence            55556777766666778889999999999999999998877654321111    121  1     1  23333221 122


Q ss_pred             HHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 010361          259 GAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPV  338 (512)
Q Consensus       259 g~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s  338 (512)
                      |+...+   .++.++      ++++.=-+.+...||+.-....-+..++=|.+--.++..+|.......-..+. .+   
T Consensus       146 G~G~~~---~~~pai------viv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~-l~---  212 (509)
T KOG2504|consen  146 GLGLGL---IYLPAV------VILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS-LN---  212 (509)
T ss_pred             hccchh---hhcchh------hhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH-HH---
Confidence            221111   112211      12220001267788888887777777777777888887777654333222111 11   


Q ss_pred             HHHHHHHHHhhccccccc----------ccccccc-C-CCCCCCCCCCC---------cchhHHhHH--HHHHhH----h
Q 010361          339 MIILTWFTNKISSGVLDR----------AKCSQSC-C-RTSNEGPVPDA---------DNIVDVGIE--AIKLGW----K  391 (512)
Q Consensus       339 ~~ll~~~i~rv~~~~l~~----------~~~~~~~-~-~~~~~~~~~~~---------~~~~~~~~~--~i~eG~----~  391 (512)
                      .++....++.+..+..+.          ..+.... . +...+.+.+..         ....++.++  ..+...    .
T Consensus       213 ~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  292 (509)
T KOG2504|consen  213 VLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDL  292 (509)
T ss_pred             HHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhH
Confidence            111111222110000000          0000000 0 00000000000         000000011  112222    2


Q ss_pred             hhhcCcchhHHHH-HHHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 010361          392 EYMQQPVLPASLA-YVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (512)
Q Consensus       392 ~y~~qpvl~asla-~alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~  461 (512)
                      .++++|.++-... ..+.++.. ..+....+.|.++.|+++.......++.++..+.|=++.+++..+...
T Consensus       293 ~ll~~~~fl~~~~~~~~~~~g~-~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~  362 (509)
T KOG2504|consen  293 SLLKDPKFLLLALSNLFAYLGF-NVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI  362 (509)
T ss_pred             HHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc
Confidence            5677776655322 22222222 123345666777899999999999999999999999999999887763

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.59  E-value=1.9  Score=47.23  Aligned_cols=60  Identities=22%  Similarity=0.145  Sum_probs=43.8

Q ss_pred             HHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHh
Q 010361          424 LTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW  484 (512)
Q Consensus       424 l~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~~L~~~v~~f~  484 (512)
                      .+..|.+... -..--.-++..+++++++..+.+|+|..+..+++...+.+|+.+....+.
T Consensus       322 f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~  381 (513)
T KOG0254|consen  322 FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGV  381 (513)
T ss_pred             HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3456777554 33444455556678888899999999999999999999998876655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=95.56  E-value=0.34  Score=51.40  Aligned_cols=153  Identities=12%  Similarity=0.055  Sum_probs=89.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHH-HHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALL-HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAY-ICLNTVQA  223 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l-~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vm-i~~dlvq~  223 (512)
                      +.++......++-..+-.....-+|.++... .+ |...++.+.....+..++.....|.+.||.+||+.. ...-+.. 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~-  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFA-  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHH-
Confidence            4455566666666666666677788888774 34 778888888888888889999999999999877643 3222211 


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                           .+.+++.   ...  ..   ....+..+.+.................+    ..+.   ++...+++.......+
T Consensus       321 -----~~~~~~~---~~~--~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~---~~~~~a~g~~~~~~~~  380 (412)
T TIGR02332       321 -----AAGWLLA---SAT--DH---NLIQLLGIIMASMGSFSAMAIFWTTPDQ----SISL---QARAIAIAVINATGNI  380 (412)
T ss_pred             -----HHHHHHH---Hhc--CC---HHHHHHHHHHHHHHhhhhhhHHHhhccc----ccch---HHHHHHHHHHHHhhhh
Confidence                 1111111   111  11   1111111111111111111111111111    2232   3788899999999999


Q ss_pred             HHHHhHHHHHHHHhhcc
Q 010361          304 CEIAGASLFGILLSKYE  320 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s  320 (512)
                      +.++||.+.|.+....+
T Consensus       381 g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       381 GSALSPFLIGILKDATG  397 (412)
T ss_pred             hhhhhhhhcccccccCC
Confidence            99999999999988654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11043 putative transporter; Provisional

Probab=95.30  E-value=1.5  Score=45.68  Aligned_cols=154  Identities=16%  Similarity=0.081  Sum_probs=81.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+.....+...+-..+....|.+... .+ +....++......+..++.+...|.+.||++||+.+...-+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~  279 (401)
T PRK11043        201 KSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFA  279 (401)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            34445443333333333334445556777654 45 77777776666666777777888899999999987765544432


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHH-HhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERL-TGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l-~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      +.   ...+..... ...  .+  .+.+++...+.+..... .......+.+      ..+    ++..++++....+..
T Consensus       280 ~~---~~~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~g~~~g~~~~~~~  341 (401)
T PRK11043        280 VS---VIAIWLASL-LSH--PS--LVPLLIPFCVMAAANGAIYPIVVAQALR------PFP----QATGKAAALQNTLQL  341 (401)
T ss_pred             HH---HHHHHHHHH-hcc--Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHhh------hCc----ccChHHHHHHHHHHH
Confidence            21   111111111 111  11  11222222222322222 2222222222      112    256788888888888


Q ss_pred             HHHHHhHHHHHHHHh
Q 010361          303 LCEIAGASLFGILLS  317 (512)
Q Consensus       303 ~~kilGP~lgGlL~s  317 (512)
                      .....+|.++|.+..
T Consensus       342 ~~~~~~~~~~g~l~~  356 (401)
T PRK11043        342 GLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHccC
Confidence            777788888887765

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=95.28  E-value=5.1  Score=42.89  Aligned_cols=258  Identities=17%  Similarity=0.153  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHH---HccccceeeecccCChhHHHHHHHHHHHH
Q 010361          150 YALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILI---VGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       150 ~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~l---l~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      ..+..+=.+-.++=|----+++-++-.+-+ .-+-.+..++.+++|.+   +++|++..+.-|+.-.|.+..+-++    
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Lll----   86 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLL----   86 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHH----
Confidence            455666666666667666666666655554 33445555666666664   5677888888888777666555432    


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                        +..+.++-.  .    .+  .+.+|.-..+.|+.-.+.++-.-.         ++++|-+++....-+.-...=.++.
T Consensus        87 --i~~G~~iR~--~----~~--~~~L~~gt~l~G~gIav~nVLLPs---------lIK~~Fpk~~~~mtglYs~sl~~~a  147 (395)
T COG2807          87 --IAAGILIRS--L----GG--LPLLFLGTLLAGAGIAVINVLLPS---------LIKRDFPKRVGLMTGLYSTSLGAGA  147 (395)
T ss_pred             --HHHHHHHHh--c----cc--HHHHHHHHHHHHhhHHHHHHhhhH---------HHHhhcccchhhHHhHHHHHHHHHH
Confidence              111221111  0    11  234555555555544444433333         3333222233222222222222222


Q ss_pred             HHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (512)
Q Consensus       306 ilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (512)
                      -+|+.+.--+-+..+.     .-..+..|..+........+..     ..+.+...  .     .   ..++..      
T Consensus       148 aLaa~lavpla~~~~g-----W~~aL~~WAl~allAl~~WlPq-----~~r~~~~~--~-----~---~~~~~~------  201 (395)
T COG2807         148 ALAAALAVPLAQHSGG-----WRGALGFWALLALLALLIWLPQ-----ALREQAAS--I-----A---TKLVSV------  201 (395)
T ss_pred             HHHhhhhhHHHHhhcc-----HHHHHHHHHHHHHHHHHHHhhh-----cccccccc--c-----c---cccccc------
Confidence            3333333333332211     0111223333332221112111     01110000  0     0   000000      


Q ss_pred             HHHhHhhhhcCcchhHHHHH----HHHHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 010361          386 IKLGWKEYMQQPVLPASLAY----VLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (512)
Q Consensus       386 i~eG~~~y~~qpvl~asla~----alL~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~  461 (512)
                           +-+||+|.-.....+    +.+|+++    -+=++.++.++|+|+.+-|.+.+...+.++..++..|.+.+|..-
T Consensus       202 -----~~vw~~~~aW~vtLfmGlqS~~~Y~~----~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n  272 (395)
T COG2807         202 -----RKVWRSPLAWQVTLFMGLQSLLYYIV----IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN  272 (395)
T ss_pred             -----cccccCchhHHHHHHHHhhHHHHHHH----HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                 124677744433222    3444443    134677778999999999999999999999999999999998765


Q ss_pred             hhHH
Q 010361          462 LKAG  465 (512)
Q Consensus       462 ~rag  465 (512)
                      .|-.
T Consensus       273 ~r~~  276 (395)
T COG2807         273 QRPL  276 (395)
T ss_pred             cchH
Confidence            5543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.11  E-value=0.92  Score=48.99  Aligned_cols=160  Identities=14%  Similarity=0.058  Sum_probs=99.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++++.|+|..=++..-=+---....+|.|..+.++ +....+.+++...++..+.=|.+|.+.||++.+|++...-.+-+
T Consensus       216 ~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~  295 (417)
T COG2223         216 SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMA  295 (417)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHH
Confidence            45555554433333333333456789999999999 99999999999999999999999999999999988766544322


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHH-HHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFV-LVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v-~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      +.   . .+  ..+......... ....+.. .+.+.   .+....+.... | ++|.+-++    +.-.++.....+--
T Consensus       296 ~~---~-~~--l~~~~~~~~~~~-~~~~~~~~~l~l~---~~~G~GnGsvf-k-~Ip~if~~----~~G~v~G~vga~G~  359 (417)
T COG2223         296 LA---A-AL--LSLFLTGFGHGG-SFVVFVAVFLALF---VFAGLGNGSVF-K-MIPVIFPK----ETGAVTGIVGAIGG  359 (417)
T ss_pred             HH---H-HH--HHccccccccCc-chHHHHHHHHHHH---HHhccCcchhe-e-echHHHHh----hhhHHHHHHHHhcc
Confidence            11   1 11  111111000011 1112222 22233   34444555444 3 57776553    56777777777777


Q ss_pred             HHHHHhHHHHHHHHhhcc
Q 010361          303 LCEIAGASLFGILLSKYE  320 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s  320 (512)
                      +..+.=|...|..+...+
T Consensus       360 lGGf~lp~~~g~~~~~tg  377 (417)
T COG2223         360 LGGFFLPLAFGVSLDLTG  377 (417)
T ss_pred             ccccchhHHHHHHHHhcc
Confidence            777777888898888766

>TIGR01272 gluP glucose/galactose transporter

Probab=95.08  E-value=1.3  Score=45.52  Aligned_cols=155  Identities=11%  Similarity=-0.056  Sum_probs=88.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL--HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l--~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      +++.++....+.++-.-++....--.+.|+.+.  .+ +....+.+........++-....+.++||++++|+++.+-+.
T Consensus       138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l  217 (310)
T TIGR01272       138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL  217 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            445555555555554444544444467777654  46 788888888888888888888999999999999987766543


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHH-HHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAV-ERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i-~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~I  300 (512)
                      ..+.    ..+  ..  ..   .+.  ..++.+. +.|.. +..+......+.+.      .++    +-.++.+.+ ..
T Consensus       218 ~~~~----~~l--~~--~~---~~~--~~~~~~~-l~g~~~s~i~P~~~s~a~~~------~~~----~~~~asai~-~~  272 (310)
T TIGR01272       218 AVLL----SIG--AA--LT---HGY--VAMWFVL-ALGLFNSIMFPTIFSLALNA------LGR----HTSQGSGIL-CL  272 (310)
T ss_pred             HHHH----HHH--HH--Hc---CCH--HHHHHHH-HHHHHHHHHHHHHHHHHHhh------hhh----hhhhhHHHH-HH
Confidence            3221    111  11  11   111  1122222 22322 33333334333321      111    333444444 55


Q ss_pred             HHHHHHHhHHHHHHHHhhcchhhH
Q 010361          301 DLLCEIAGASLFGILLSKYEPVTC  324 (512)
Q Consensus       301 dl~~kilGP~lgGlL~s~~s~~~~  324 (512)
                      ..+...++|.+.|.+.+..+...+
T Consensus       273 ~~~Gg~i~P~l~G~lad~~g~~~a  296 (310)
T TIGR01272       273 AIVGGAIVPLLQGSLADCLGIQLA  296 (310)
T ss_pred             HHhcchHHHHHHHHHHHhccchHH
Confidence            666788999999999887765443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=94.85  E-value=0.6  Score=50.66  Aligned_cols=68  Identities=16%  Similarity=-0.034  Sum_probs=48.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCCh
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRI  212 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr  212 (512)
                      +++.++.++...++..........-+|.++....+ +...++.+.....+..++..+..|.+.||++||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        250 TNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            34456666665544433333333446777777777 888888888888888899999999999999876

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.78  E-value=0.98  Score=52.09  Aligned_cols=106  Identities=11%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             HhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHh
Q 010361          381 VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGV-AATFLSAYLVRR  458 (512)
Q Consensus       381 ~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGL-lGt~lap~L~rR  458 (512)
                      +..+|+..-++-++++|++.-.+....+...++.++.+.+.-|+.+ -|.+++..-.+.|..++.+. +|.++.++++||
T Consensus       376 ~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikk  455 (735)
T KOG3626|consen  376 KKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKK  455 (735)
T ss_pred             hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeee
Confidence            3456777788889999998876666566655546777788889985 59999999999988888877 699999999998


Q ss_pred             hChh--hHHHHHHHHHHHHHHHHHHHHhcC
Q 010361          459 LGIL--KAGAAGLIFQASLLAMAVAVYWSG  486 (512)
Q Consensus       459 lG~~--ragl~~l~~Q~~~L~~~v~~f~~g  486 (512)
                      +.+.  .+..|.++.-.+++..-+..|..|
T Consensus       456 fkl~~r~~a~~~~~~~~l~l~~~~~~~~ig  485 (735)
T KOG3626|consen  456 FKLSARGAAKFVIVCSVLSLLFYSLLFFIG  485 (735)
T ss_pred             ecccHHHHHHHHHHHHHHHHHHHHHHHEec
Confidence            8754  555666665555555545555555

>PRK11462 putative transporter; Provisional

Probab=94.75  E-value=0.79  Score=49.70  Aligned_cols=76  Identities=9%  Similarity=-0.053  Sum_probs=57.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHH
Q 010361          144 AHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLN  219 (512)
Q Consensus       144 ~~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~d  219 (512)
                      .+|+.++.+....++..++..+......-+.....+..-..+.+.....++.++..+++|.++||++||+++...-
T Consensus       225 ~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~  300 (460)
T PRK11462        225 WQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN  300 (460)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            4788888888888888888888877766666666664333455556667788888899999999999998876544

>PTZ00207 hypothetical protein; Provisional

Probab=94.11  E-value=13  Score=42.21  Aligned_cols=152  Identities=12%  Similarity=-0.012  Sum_probs=83.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          146 PEGLYALYACCLAGNLVEQLWNFAW--PSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       146 ~r~f~~L~~g~~lS~~Gdri~~FAl--pL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      .+.+..+.++-.+.....-.+.|.+  |-+ ..-++ |..+++...... ...-.+.++.|.+.||++||+++..+-+.-
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L-~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFMYAFNLISGAM-QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3445556555555554444444433  433 34445 766666665543 334456768899999999999998887654


Q ss_pred             HHHHHHHHHHHHHHHhhccc-CCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPT-SSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~-~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      .+.    ..+  ..+..... ..+  .+.+++..++.|..+..+.++....+. +|.|    +    +-..+.+.+....
T Consensus       102 ~iG----~ll--~ala~~~~i~~s--~~~l~l~r~l~G~G~~~~~~~~~~~i~-~~Fp----~----~RG~a~Gi~~~~~  164 (591)
T PTZ00207        102 CLG----TLL--FALTFQEVIEGS--VVRLSVYNGLMTLGCMLFDLGAVVTVL-SVFP----S----NRGAVVAIMKTFT  164 (591)
T ss_pred             HHH----HHH--HHHHhcccccCc--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCh----h----hhHHHHHHHHHHH
Confidence            322    111  11111100 011  223344444556555555555555553 4655    2    2366777777777


Q ss_pred             HHHH-HHhHHHHHHHH
Q 010361          302 LLCE-IAGASLFGILL  316 (512)
Q Consensus       302 l~~k-ilGP~lgGlL~  316 (512)
                      .++. +++|+..+++.
T Consensus       165 gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        165 GLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7765 45666666554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=93.70  E-value=14  Score=41.06  Aligned_cols=168  Identities=11%  Similarity=0.057  Sum_probs=95.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHHHHHccccceeeeccc-CChhH
Q 010361          142 TPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP------SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPA  214 (512)
Q Consensus       142 ~~~~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~------Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-~Rr~v  214 (512)
                      ...|||.++.+..-++--.|+=.=-+--+-+|+..-.+      .--..+++++...+.++ ...++|.++||+ ++||.
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~-t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYL-TPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHH-HHHHHHHHHHHhcchhHH
Confidence            34489999999877776666555555555555544332      23344555555555443 356788999998 56665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHH
Q 010361          215 YICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKAN  294 (512)
Q Consensus       215 mi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aN  294 (512)
                      +.+.-++      ..++-+..  ..... .+  ...+++.+.+.++...++..-....+- |    +-+++++ ++..++
T Consensus        95 I~lGail------~~iGh~~L--~~~~~-~~--~~gl~i~L~~I~iG~Gl~K~NiS~llg-~----ly~~~Dp-rrD~gF  157 (498)
T COG3104          95 IVLGAIL------MAIGHLVL--AISSV-SG--PGGLYIGLALIIVGTGLFKPNISSLLG-E----LYPKDDP-RRDGGF  157 (498)
T ss_pred             HHHHHHH------HHHHHHHH--hcccc-cc--ccHHHHHHHHHHhccccccccHHHHHH-H----hcCCCCc-ccCCCc
Confidence            5444322      11121111  11100 11  123455555555555554442222221 1    3344444 688888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHH
Q 010361          295 AVLNRIDLLCEIAGASLFGILLSKYEPVTCLKF  327 (512)
Q Consensus       295 s~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~  327 (512)
                      +..-..+.+..+++|.+.|.+-...+-+.+...
T Consensus       158 t~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~  190 (498)
T COG3104         158 TLFYMGINIGSLIAPIITGLLAINYGWHVGFGL  190 (498)
T ss_pred             cEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            888888889999999999999888875444333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.70  E-value=4.7  Score=37.78  Aligned_cols=149  Identities=21%  Similarity=0.102  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHH
Q 010361          152 LYACCLAGNLVEQLWNFAWPSAIALLHPSL--LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (512)
Q Consensus       152 L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sl--l~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls  229 (512)
                      ++.+.+.+.++...+....+.+......+.  ...+.......+...+..++.|.+.||++||+.+......  .  ...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--~--~~~   82 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL--F--LLG   82 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH--H--HHH
Confidence            677777788888899999999988887644  4667777777788888889999999999888666665533  1  111


Q ss_pred             HHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHH-HHHHHHHHh
Q 010361          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR-IDLLCEIAG  308 (512)
Q Consensus       230 ~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~-Idl~~kilG  308 (512)
                      ..+  ..+..    . .....+.+..+..|.......+.....+ .+|.|.  . +   +....++.... .-....++|
T Consensus        83 ~~~--~~~~~----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~  148 (338)
T COG0477          83 TLL--LALAP----N-VGLALLLILRLLQGLGGGGLLPVASALL-SEWFPE--A-T---ERGLAVGLVTLGAGALGLALG  148 (338)
T ss_pred             HHH--HHhCc----c-chHHHHHHHHHHHHhhhHHHHHHHHHHH-HHhcCc--h-h---HHHHHHHHHHHHHHHHHHHHH
Confidence            111  11111    1 0011222222223444443333333322 344333  1 1   45555555555 466677888


Q ss_pred             HHHHHHHHhh
Q 010361          309 ASLFGILLSK  318 (512)
Q Consensus       309 P~lgGlL~s~  318 (512)
                      |.+++.+...
T Consensus       149 ~~~~~~~~~~  158 (338)
T COG0477         149 PLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHH
Confidence            8888777665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=93.44  E-value=0.93  Score=49.79  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=99.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCCh-----hHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRI-----PAYICL  218 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr-----~vmi~~  218 (512)
                      ..+.++..|.+|+.-+|+-.+...=.|.|+-++.+ +....|.+...=.+...++...+|.+.||..+|     .+++..
T Consensus       256 ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  256 TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            45678999999999999999999999999999999 999999998888888899999999999999875     122222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHH
Q 010361          219 NTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN  298 (512)
Q Consensus       219 dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~  298 (512)
                      +   .++....+..++..-..+. ...   +...+.+.+.-+...+....+..... |    .++    .+-.-..+..+
T Consensus       336 n---~i~~~~~ai~l~~l~~~~~-~~~---~~a~~~l~~~~~~~g~~~~Gf~~~~~-~----~ap----q~a~~l~g~~~  399 (466)
T KOG2532|consen  336 N---TIAFGGPAVFLLVLAFTSD-EHR---LLAVILLTIAIGLSGFNISGFYKNHQ-D----IAP----QHAGFVMGIIN  399 (466)
T ss_pred             H---hHHHHHHHHHHHeeeecCC-Ccc---hHHHHHHHHHHHHcccchhhhHhhhh-h----ccc----hHHHHHHHHHH
Confidence            2   2222222222111101111 111   00111111112222222222222210 1    022    26777888888


Q ss_pred             HHHHHHHHHhHHHHHHHHh
Q 010361          299 RIDLLCEIAGASLFGILLS  317 (512)
Q Consensus       299 ~Idl~~kilGP~lgGlL~s  317 (512)
                      .+..++.+++|.+.|.+..
T Consensus       400 ~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  400 FVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             HHHHHHHHHHHHheeeEeC
Confidence            8889999999999999985

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=93.41  E-value=3.4  Score=42.86  Aligned_cols=67  Identities=6%  Similarity=-0.003  Sum_probs=48.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCC
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPR  211 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~R  211 (512)
                      +++.++.+...-+....+-..++.-.|.+..+..+ +....+++........++.+..+|++.||.+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        205 SNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556665555566666666666667777777777 88888888777777777788888889998874

>TIGR00901 2A0125 AmpG-related permease

Probab=93.32  E-value=1.5  Score=44.84  Aligned_cols=74  Identities=19%  Similarity=0.077  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHH-HHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFF-SKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~-~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++.+....++-.++......-.|.++.+ .+ +.-.++..... ..+..++..+.+|.+.||++||+.++.+-++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~  286 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA  286 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5556666666666666666677888877 56 77777755543 345677888889999999999988777666543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=93.29  E-value=3  Score=46.16  Aligned_cols=144  Identities=13%  Similarity=0.020  Sum_probs=74.7

Q ss_pred             HHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHH
Q 010361          173 AIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPW  251 (512)
Q Consensus       173 ~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l  251 (512)
                      .+..-.+ +.-.+....+......++....+..++||.+||++++.+-.+.++.   .+.+.+.......  .+  .+..
T Consensus       295 ~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~---~~~~~~~~~l~~~--~~--~~~~  367 (485)
T KOG0569|consen  295 SIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA---LLLMSIALFLSNS--FG--SWLS  367 (485)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH---HHHHHHHHHHHHH--hh--hHHH
Confidence            3333345 5555566666677777888888999999999999999988766553   1122112111111  11  1233


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHH
Q 010361          252 FFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKF  327 (512)
Q Consensus       252 ~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~~~~i~~  327 (512)
                      |..++..-.....+...-+. ++-=....+++.+   ....+.+......-+++++=....=.+...+|+...+.|
T Consensus       368 y~~i~~~~~~~~~f~~G~gp-i~~fi~aELf~~~---~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF  439 (485)
T KOG0569|consen  368 YLCIAAIFLFIISFAIGPGP-IPWFIGAELFPQS---ARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILF  439 (485)
T ss_pred             HHHHHHHHHHHHhhhcCCCc-hhHHHHHHhCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            33222111111122222111 1101112255543   566677777766666666655555555666666433333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=93.22  E-value=16  Score=40.28  Aligned_cols=76  Identities=14%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             HHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHH---HHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChh
Q 010361          386 IKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL---TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (512)
Q Consensus       386 i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl---~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~  462 (512)
                      ..++.+-.++++-|.-.+..-.+++.   .|.++.+..-   .-.|++...-|..-..+.++|++|+++++.+..|.+-.
T Consensus       255 f~~si~~~~~n~~F~il~~~ygi~~g---~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f  331 (480)
T KOG2563|consen  255 FPKSIKSCFKNRQFIILAICYGIGLG---LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF  331 (480)
T ss_pred             HHHHHHHHHcCccHHHHHHHHhhhHH---HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            56777777787765443322233332   2444444433   23688888899999999999999999999999887755


Q ss_pred             hH
Q 010361          463 KA  464 (512)
Q Consensus       463 ra  464 (512)
                      |.
T Consensus       332 k~  333 (480)
T KOG2563|consen  332 KL  333 (480)
T ss_pred             HH
Confidence            43

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=93.15  E-value=3.9  Score=43.53  Aligned_cols=116  Identities=12%  Similarity=-0.049  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHH
Q 010361          184 VAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVER  263 (512)
Q Consensus       184 vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~  263 (512)
                      .+.......+..++..+..|.++||++||++++..-++..+.    ..++... .... ...  ... ...+++.+....
T Consensus       308 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~----~~~l~~~-~~~~-~~~--~~~-~~~~~~~~~~~~  378 (479)
T PRK10077        308 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG----MFSLGTA-FYTQ-APG--IVA-LLSMLFYVAAFA  378 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHH----HHHHHHH-HhcC-ccc--HHH-HHHHHHHHHHHh
Confidence            344444556667788899999999999999998877654332    1111111 0111 011  011 111111111111


Q ss_pred             H-HhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010361          264 L-TGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILL  316 (512)
Q Consensus       264 l-~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~  316 (512)
                      . ..+...     .++..+.+.   ++-..+++....+..++.++||.+.+.+.
T Consensus       379 ~~~~~~~~-----~~~~e~~p~---~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        379 MSWGPVCW-----VLLSEIFPN---AIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             ccccchhH-----HHhHhhCCh---hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            1 111111     122334443   36788999999999999988877666544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=92.96  E-value=0.26  Score=53.23  Aligned_cols=69  Identities=20%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 010361          402 SLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIF  471 (512)
Q Consensus       402 sla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~  471 (512)
                      +..+.+.|++. ..+.+....|+.+ .|++++++|.+.+++++..++.-.+++.+..|+|..|..++.+..
T Consensus        13 s~~~f~~Ff~~-gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~   82 (412)
T PF01306_consen   13 SLFYFFYFFIW-GIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAI   82 (412)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHH
Confidence            33343444443 4566678888886 899999999999999999999999999999999999998877653

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=92.46  E-value=6.3  Score=41.43  Aligned_cols=147  Identities=13%  Similarity=-0.013  Sum_probs=77.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChh---H-HHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIP---A-YICLN  219 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~---v-mi~~d  219 (512)
                      +++.++.++...++...+......=+|.++.. .+ +.. .+.+.   .++.+.-..-.|.+.||.+||+   . ++..-
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~---~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~  264 (368)
T TIGR00903       190 GRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAV---ALAILAGLIGVAVIPDRVARAGLRSIYIRAAA  264 (368)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHH---HHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH
Confidence            67788888888888877777666667888855 44 532 34333   3343333333577788877653   2 21111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHH
Q 010361          220 TVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR  299 (512)
Q Consensus       220 lvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~  299 (512)
                      ++      ..+.+....  ..   .+.  ...++...+.+......... ..++..|    +.++   +....+.+....
T Consensus       265 ~~------~a~~~~~~~--~~---~~~--~~~~~~~~l~~~~~~~~~~~-~~~~~~~----~~p~---~~rgt~~G~~~~  323 (368)
T TIGR00903       265 LL------IAAFFLALA--FE---LNR--LALFAFIGIAGLLMLPAYAI-IMDWIGK----FCDK---ELHGKAAGAIGF  323 (368)
T ss_pred             HH------HHHHHHHHH--Hc---ccc--HHHHHHHHHHHHhhhhhHHH-HHHHHHH----hcch---hhcCcccchhhH
Confidence            11      111111111  11   111  11111111122111111111 1122223    5554   367888999999


Q ss_pred             HHHHHHHHhHHHHHHHHh
Q 010361          300 IDLLCEIAGASLFGILLS  317 (512)
Q Consensus       300 Idl~~kilGP~lgGlL~s  317 (512)
                      +..+..+++|.+.|.+++
T Consensus       324 ~g~~~~~~~~~~~~~~~~  341 (368)
T TIGR00903       324 TSRAISVALALAAMLFIS  341 (368)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998884

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.32  E-value=3.3  Score=43.27  Aligned_cols=152  Identities=15%  Similarity=0.075  Sum_probs=88.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      +.||.+.+=+.+=-..--=+----|.+...-++ |....+-..........+++|.-|.++|+++|+-..+.+-..-.  
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t--  341 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT--  341 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH--
Confidence            447776655544322211111122444555567 76666655555566668899999999999999876655542211  


Q ss_pred             HHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHH
Q 010361          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (512)
Q Consensus       226 v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~k  305 (512)
                       +++=.++.+  +.       + .+ |+.+.++|..-.+-.-+.-..     |+.++++   +||-.+-+.++.|+...-
T Consensus       342 -l~~H~~l~F--t~-------l-sP-y~~m~~lGLsysllAcslWP~-----va~~vpE---~qLGTaygf~qsIqNLgl  401 (459)
T KOG4686|consen  342 -LLGHSGLFF--TF-------L-SP-YTSMTFLGLSYSLLACSLWPC-----VASLVPE---EQLGTAYGFIQSIQNLGL  401 (459)
T ss_pred             -HHHhhhHHh--hh-------c-cH-HHHHHHHhhhHHHHHHHHhhh-----hhhhCCH---HHhcchHHHHHHHHhhhh
Confidence             111111111  11       1 12 444444443333321111121     4457776   499999999999999999


Q ss_pred             HHhHHHHHHHHhhcc
Q 010361          306 IAGASLFGILLSKYE  320 (512)
Q Consensus       306 ilGP~lgGlL~s~~s  320 (512)
                      -+-|+++|++...-|
T Consensus       402 a~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  402 AFIPIIAGFIADGDG  416 (459)
T ss_pred             hHHhhhhheeecCCC
Confidence            999999999977554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.24  E-value=21  Score=39.38  Aligned_cols=85  Identities=18%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             HHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcc----hhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 010361          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPS----IIGGFSGLCASMGVAATFLSAYLVRRLG  460 (512)
Q Consensus       385 ~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~----~iG~~~g~gavgGLlGt~lap~L~rRlG  460 (512)
                      .+.||+++.+++|.++....+.++|..+.--.....-..++++.-++.    ..|-+...-++..++--++.+++.||+|
T Consensus       252 ~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G  331 (472)
T TIGR00769       252 STMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG  331 (472)
T ss_pred             CHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            578999999999998887666666643311122233333444443443    4444444545555555556699999999


Q ss_pred             hhhHHHHHH
Q 010361          461 ILKAGAAGL  469 (512)
Q Consensus       461 ~~ragl~~l  469 (512)
                      -..+.+..-
T Consensus       332 w~~~a~i~P  340 (472)
T TIGR00769       332 WLTAALITP  340 (472)
T ss_pred             HHHHHHHHH
Confidence            876655444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=91.60  E-value=1.6  Score=46.85  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             HHHHhhhhhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 010361          408 LCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (512)
Q Consensus       408 L~~tvll~~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~r  463 (512)
                      +++.+...+-..+.+|+++.|+|+.++|++.+++.+..+++..+.+.+.+|.+..+
T Consensus        13 ~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~   68 (400)
T PF03825_consen   13 LYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAK   68 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH
Confidence            33333245666788899999999999999999999999999999999999986443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=91.51  E-value=1.1  Score=48.73  Aligned_cols=59  Identities=17%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHH---hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh-hChhhHHHHHHHHHHH
Q 010361          416 PGSLMTAFLTQ---RGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQAS  474 (512)
Q Consensus       416 ~~~l~v~yl~~---lGls~~~iG~~~g~gavgGLlGt~lap~L~rR-lG~~ragl~~l~~Q~~  474 (512)
                      ..+.++.|+.+   +|+++.+.|.+.+...+++.++.++.+++..| +|..|+..++.....+
T Consensus        29 ~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            34578888875   79999999999999999999999999999998 8999998887765443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=91.31  E-value=1.5  Score=44.60  Aligned_cols=59  Identities=17%  Similarity=0.313  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 010361          415 TPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQA  473 (512)
Q Consensus       415 ~~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~  473 (512)
                      .+..+.+.|++ +.|+++.++|++.+...++..++.++.+++.+|+|..+...++.....
T Consensus        19 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   78 (366)
T TIGR00886        19 AFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLA   78 (366)
T ss_pred             HhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            34455554454 689999999999999999999999999999999999988766655433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=91.26  E-value=0.06  Score=60.03  Aligned_cols=104  Identities=15%  Similarity=0.284  Sum_probs=0.0

Q ss_pred             hHHHHHHhHhhhhcCcchhHHHHH-HHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 010361          382 GIEAIKLGWKEYMQQPVLPASLAY-VLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCAS-MGVAATFLSAYLVRR  458 (512)
Q Consensus       382 ~~~~i~eG~~~y~~qpvl~asla~-alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gav-gGLlGt~lap~L~rR  458 (512)
                      ..+++....+.++++|++.-.... +.-.+.+ .++.+.++-|+.+ -+++++.-..+.|+..+ ++.+|.++.+.++||
T Consensus       290 ~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~-~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk  368 (539)
T PF03137_consen  290 SIKDFPKALKRLLTNPVFMCLILAGVFESFIV-SGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKK  368 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEE
Confidence            445666677888999988775443 3444433 6787888899985 59999998888877776 556899999999999


Q ss_pred             hChh--hHHHHHHHHHHHHHHHHHHHHhcC
Q 010361          459 LGIL--KAGAAGLIFQASLLAMAVAVYWSG  486 (512)
Q Consensus       459 lG~~--ragl~~l~~Q~~~L~~~v~~f~~g  486 (512)
                      +++.  ++..+.+..+.+++..-...|+.+
T Consensus       369 ~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~  398 (539)
T PF03137_consen  369 FKLSARGAAKFCIVVSIVSVILYSPLFFLG  398 (539)
T ss_dssp             ------------------------------
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence            8765  344444444444433323344333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=90.55  E-value=3.7  Score=44.68  Aligned_cols=155  Identities=12%  Similarity=-0.008  Sum_probs=100.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      ++++..++.++.++=+=|-..-.---..|....++ |-..+.+++.+..+-.++.+..+|.+.||++-|+++....++  
T Consensus       250 ~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi--  327 (438)
T COG2270         250 GRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI--  327 (438)
T ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH--
Confidence            55678887777776554433333333455566777 899999999999999999999999999999988776665542  


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHH-HHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFV-LVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v-~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                          .+.+. ++......   .    .-|+. .++.|.    +.-.. .|..|+|.-.+++++   +=.+.=+.-...+.
T Consensus       328 ----~~~~~-~~~~~~~~---~----~~f~i~gll~g~----s~G~~-qA~SRSy~~~lvp~~---k~~~fFglyaltgr  387 (438)
T COG2270         328 ----LSIAA-LYLIFLEG---E----LDFWILGLLVGT----SLGGA-QASSRSYLARLVPKG---KEGRFFGLYALTGR  387 (438)
T ss_pred             ----HHHHH-HHHHHccc---c----HHHHHHHHHHHH----hcchH-HHHHHHHHHHhCCCc---cccceeehhhhhhh
Confidence                22222 12222221   1    11222 222222    11112 355678888888875   34455566667788


Q ss_pred             HHHHHhHHHHHHHHhhcch
Q 010361          303 LCEIAGASLFGILLSKYEP  321 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s~  321 (512)
                      .+.+.||.+.|.+.+..+-
T Consensus       388 a~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         388 AASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            8999999999999987654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=89.87  E-value=4.2  Score=43.31  Aligned_cols=56  Identities=13%  Similarity=0.042  Sum_probs=47.3

Q ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 010361          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS  474 (512)
Q Consensus       419 l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~  474 (512)
                      +.+.+..+.|+++.+.|++.+...++.++++...+++.+|+|.+|+...++....+
T Consensus        25 l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~   80 (410)
T TIGR00885        25 MVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYAL   80 (410)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34444345899999999999999999999999999999999999988887765443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=89.74  E-value=2  Score=36.36  Aligned_cols=61  Identities=18%  Similarity=0.113  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHH
Q 010361          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL  476 (512)
Q Consensus       416 ~~~l~v~yl~~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~~L  476 (512)
                      |..+++.-..+.++|..+-|++-+..-+|-++|++.+.++.++.+..+....+++.-..++
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~   71 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLST   71 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            4445555556789999999999999999999999999999988777777777766544444

Note that many members are hypothetical proteins.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=89.66  E-value=35  Score=37.21  Aligned_cols=46  Identities=24%  Similarity=0.142  Sum_probs=33.6

Q ss_pred             ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH
Q 010361          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (512)
Q Consensus       180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~  225 (512)
                      +...+.+...+..+-.++.+.+.|.+.||++||++++.+.+++.+.
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~  161 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIF  161 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHH
Confidence            3444444555555566677777799999999999999998877553

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=89.41  E-value=9.7  Score=42.35  Aligned_cols=155  Identities=17%  Similarity=0.109  Sum_probs=97.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCC--hhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPR--IPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~R--r~vmi~~dlvq  222 (512)
                      +++.|..+-.+-.+..+|--+..+=+|-++....-+--.++.+.......-++.=+..|.+.|+...  +.+...+.++.
T Consensus       296 ~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  296 KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            6678999999999999999999999999988554344444544444555556666667888898873  33333343332


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl  302 (512)
                      .+    +...+.+.       .+  ...+....++.|.....+.....+.+ .|    +++.   ++++++=+.+...+.
T Consensus       376 gl----~~~~~p~~-------~~--~~~l~~~~~~fG~~~g~~~~l~~~i~-~~----~~g~---~~l~~a~Gl~l~~~g  434 (509)
T KOG2504|consen  376 GL----ARLFLPFA-------TT--YVGLIVFSILFGFCVGSFSSLTPVIL-VD----LVGL---EKLSNAYGLLLLFQG  434 (509)
T ss_pred             HH----HHHHHHHh-------cc--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HcCh---hhcchHHHHHHHHhH
Confidence            21    11111111       11  12233333344444333333222212 23    6665   389999999999999


Q ss_pred             HHHHHhHHHHHHHHhhcc
Q 010361          303 LCEIAGASLFGILLSKYE  320 (512)
Q Consensus       303 ~~kilGP~lgGlL~s~~s  320 (512)
                      +..++||+++|.+....+
T Consensus       435 i~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  435 IGALVGPPIAGLLYDITG  452 (509)
T ss_pred             HHHHcCcccceeeeeccC
Confidence            999999999998877655

>PF12832 MFS_1_like: MFS_1 like family

Probab=89.12  E-value=0.41  Score=39.51  Aligned_cols=47  Identities=19%  Similarity=0.186  Sum_probs=39.7

Q ss_pred             HHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHH
Q 010361          171 PSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICL  218 (512)
Q Consensus       171 pL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~  218 (512)
                      |++.-+ .| +..++++...+..+..++..|..|.++||++|++.+...
T Consensus        24 ~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   24 PLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             hHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            444443 45 999999999999999999999999999999999876554

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=87.78  E-value=20  Score=39.75  Aligned_cols=85  Identities=20%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHHhCCCcchh----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSII----GGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~lGls~~~i----G~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                      ..++||+++.+++|.++....+++.|-...--.+.+.-..++++--++..+    |-+....++..++-.++.+++.||+
T Consensus       267 ~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~  346 (491)
T PF03219_consen  267 MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF  346 (491)
T ss_pred             ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457899999999999988777766664321113334444444443344443    4444444444444448889999999


Q ss_pred             ChhhHHHHH
Q 010361          460 GILKAGAAG  468 (512)
Q Consensus       460 G~~ragl~~  468 (512)
                      |-..+.+..
T Consensus       347 GW~~~Alit  355 (491)
T PF03219_consen  347 GWRTAALIT  355 (491)
T ss_pred             hHHHHHHHh
Confidence            976665443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=87.59  E-value=4.1  Score=45.11  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHH
Q 010361          416 PGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL-GILKAGAAGLIFQASL  475 (512)
Q Consensus       416 ~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl-G~~ragl~~l~~Q~~~  475 (512)
                      ..+.++.|+.+ +|+++...+.+.+...++..++.++.+++.+|+ |..|+..++...+.+.
T Consensus        28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            44578888875 799999999999999999999999999999999 9999988887766543

>TIGR00788 fbt folate/biopterin transporter

Probab=87.23  E-value=2.4  Score=46.19  Aligned_cols=128  Identities=13%  Similarity=-0.010  Sum_probs=82.2

Q ss_pred             ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCchhHHHHHHHHH
Q 010361          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHA--HTVIPTSSSMLLHPWFFVLVL  257 (512)
Q Consensus       180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~--~~~~~~~~~~l~~~l~~v~~l  257 (512)
                      |+...|+......+..++.....|.+.+|++.|+++....++..+.   +.......  ......-.+.  +.+....++
T Consensus       286 s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~---~~~~~~l~~~~~~~~gi~~~--~~~~~~~~l  360 (468)
T TIGR00788       286 GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLS---SLFDLILVKRWNLAFGISDE--VFVLGDSII  360 (468)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH---HhCceeeeeccccccCCCCe--eeeeehhHH
Confidence            7778888888888999999999999999999999988887765442   11110000  0000000010  111222334


Q ss_pred             HHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 010361          258 AGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE  320 (512)
Q Consensus       258 lg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s  320 (512)
                      -+....+..++....+.+     +++++   +-...-+.+..++.++..+|+.++|.+...+|
T Consensus       361 ~~~~~g~~~~~~~~~~~~-----~~p~~---~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLAR-----LCPSG---CESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHH-----hCCCC---ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            444444444444444433     66653   56778888888999999999999999999887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=82.57  E-value=12  Score=41.02  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=44.7

Q ss_pred             hhHHHHHHHH-HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh-hChhhHHHHHHHHHHHH
Q 010361          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQASL  475 (512)
Q Consensus       416 ~~~l~v~yl~-~lGls~~~iG~~~g~gavgGLlGt~lap~L~rR-lG~~ragl~~l~~Q~~~  475 (512)
                      ....++.|+. ++|+++...+.+.+...........+.+++.+| +|..++..++.....+.
T Consensus        40 ~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig  101 (500)
T PRK09584         40 LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG  101 (500)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3456788886 589999988888777655555555788999999 59999888777655543

>PRK03612 spermidine synthase; Provisional

Probab=82.46  E-value=88  Score=34.93  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=38.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceee
Q 010361          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKL  205 (512)
Q Consensus       148 ~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~l  205 (512)
                      .-+.++..-++|-+..-++|..+.=++....++    +++.+...+...++|.-+|.+
T Consensus        15 ~~~~l~~~~f~sg~~~L~yEv~~~r~l~~~~G~----s~~~~~~ii~~fl~glalGs~   68 (521)
T PRK03612         15 DRALLLAAVFVCAACGLVYELLLGTLASYLLGD----SVTQFSTVIGLMLFAMGVGAL   68 (521)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----hHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999888888883    333344444454555544444

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=81.79  E-value=23  Score=39.28  Aligned_cols=155  Identities=13%  Similarity=0.082  Sum_probs=82.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HcCChhHHHHHHHHHHHHHHHccccceeeecccC--ChhHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWP---SAIAL--LHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSP--RIPAYIC  217 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlp---L~~~~--l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~--Rr~vmi~  217 (512)
                      +..++|.+|+.-..+.+.+-=.....|   =|+-.  .+.+.-..|+...+..+...+++|.-|.|--|..  ||+++..
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            344577777776666655433332222   23333  2336677788888899999999999999999998  6776665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHH
Q 010361          218 LNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL  297 (512)
Q Consensus       218 ~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l  297 (512)
                      +.+ +.    +.+.+ +.++...+  .+. .   |+.+ +.-.+..+..  ...++-|.|+-.   ....++-.||=+..
T Consensus       109 ~ii-~~----~g~ll-Y~~l~~~~--~~~-~---y~mL-~~R~l~Gvg~--~n~a~lR~Y~a~---~s~~~dR~rA~a~~  170 (488)
T KOG2325|consen  109 FLI-AI----IGNLL-YLALAYVP--NGV-K---YLML-VARILTGVGV--GNFAVLRAYIAD---ASTVEDRPRAFAAT  170 (488)
T ss_pred             HHH-HH----HHHHH-HHHHHhcc--cch-H---HHHH-HHHHHcCcCc--ccHHHHHHHHHh---ccCccchHHHHHHh
Confidence            543 22    22222 21222222  111 1   1111 1111111211  123344555322   22223456666666


Q ss_pred             HHHHHHHHHHhHHHHHHHHh
Q 010361          298 NRIDLLCEIAGASLFGILLS  317 (512)
Q Consensus       298 ~~Idl~~kilGP~lgGlL~s  317 (512)
                      ..-..++.++||.++-.+-.
T Consensus       171 ~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  171 SGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             hhHHHHHHHHhHHHHHHHhh
Confidence            66666778888887766544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=80.93  E-value=92  Score=34.12  Aligned_cols=137  Identities=15%  Similarity=0.096  Sum_probs=84.5

Q ss_pred             cccchhhhccCCCCCCCCCcceeecchhhhhhhhhhcccccccccccCcccCcccccCCCCChhhhhhhccCCCCCcchH
Q 010361           71 VAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLY  150 (512)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~  150 (512)
                      ..+|-+++||.+.+++  ..|+-.-+..+.      .+.++..+.+|+++.|+  ++.-    .++++.++-+-.. --+
T Consensus        13 ~~~~~~~~~~~~e~~~--V~~~~~~~~s~~------~~~~~~~~~~~~~~~~~--~k~~----tv~ea~~aigfgr-fq~   77 (528)
T KOG0253|consen   13 SPTESKKQEDVSETEL--VYPVELADATIQ------PSKSDDDLFDSNDFSDT--AKSF----TVDEAMNAIGFGR-FQW   77 (528)
T ss_pred             CcchhhHHHhhhhhcc--ccchhhcccccC------CCccccCCccccccccc--ccee----eehhhhhhcCccc-chh
Confidence            3466677777766554  345433333332      44445777888888777  2222    2344444333311 112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          151 ALYACCLAGNLVEQLWNFAWPSAI---ALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       151 ~L~~g~~lS~~Gdri~~FAlpL~~---~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      .+.+=....-..|.|+..-..++.   ...++ +..+.++++....+-+++-+-..|...|+..||+.....-++.
T Consensus        78 yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t  153 (528)
T KOG0253|consen   78 YLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT  153 (528)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence            222223334455666666555553   44456 8888899999988888999999999999999999887776554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=80.56  E-value=9.2  Score=43.58  Aligned_cols=76  Identities=11%  Similarity=-0.129  Sum_probs=60.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHH-HHHccccceeeecccCC--hhHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLI-LIVGGPLVGKLMDHSPR--IPAYICLNT  220 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp-~ll~gp~aG~lvDR~~R--r~vmi~~dl  220 (512)
                      +++.|..+..+.++...+-..+..-+|.|+...++ +...++.+.....++ .++..+.+|.++||+++  |+++..+-+
T Consensus       328 ~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~  407 (633)
T TIGR00805       328 CNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAIC  407 (633)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHH
Confidence            67788888888888888888888899999998888 888888887776665 46778889999999983  445554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	512
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 73/495 (14%), Positives = 137/495 (27%), Gaps = 136/495 (27%)

Query: 80  DMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNAL 139
           D  T E +          ++L +  +    +           D       +LS+EE + +
Sbjct: 8   DFETGEHQ------YQYKDILSVFEDAFVDNF-------DCKDVQDMPKSILSKEEIDHI 54

Query: 140 AATPAHPEGLYALYACCLA--GNLVEQLW------NFAW-PSAIA--LLHPSLLPVAVMG 188
             +     G   L+   L+    +V++        N+ +  S I      PS++    + 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 189 FFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLL 248
              +  L     +  K   +  R+  Y     ++ A   L  A  +    V+ +  +   
Sbjct: 115 QRDR--LYNDNQVFAKY--NVSRLQPY---LKLRQALLELRPAKNVLIDGVLGSGKT--- 164

Query: 249 HPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIA-LAKANAVLNRID------ 301
                   +A  V     V   +  +  W + L   N P   L     +L +ID      
Sbjct: 165 -------WVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 302 --------LLCEIAGASLFGILLSKYEPVTCLKFAAGLIM---WSLPVMIILTWFTNKIS 350
                   L      A L  +L SK     CL     L++    +         F     
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYE-NCL-----LVLLNVQNAK---AWNAFNLS-- 265

Query: 351 SGVLDRAKCSQSCCR---TSNEGPVPD---ADNIVDVGIEAIKLGWKEYMQQPVLPASLA 404
                        C+   T+    V D   A     + ++   +               +
Sbjct: 266 -------------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-------DEVKS 305

Query: 405 YVLLCLNVVLTPGSLMTAFLTQRGLNP---SIIG----------------GFSGLCASMG 445
            +L  L+    P  L    LT    NP   SII                     L   + 
Sbjct: 306 LLLKYLDC--RPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 446 VAATFLSAYLVRRLGILKAGAAGLIFQASLL--AMAVAVYWSGSLSQQNPL----LFFLC 499
            +   L     R++      +   +F  S     + +++ W   +     +    L    
Sbjct: 361 SSLNVLEPAEYRKM--FDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 500 LIVSMP----FYLHS 510
           L+   P      + S
Sbjct: 416 LVEKQPKESTISIPS 430

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	512
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.6
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.34
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.78
2xut_A	524	Proton/peptide symporter family protein; transport	98.61
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.04
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.98
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.62
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.56
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	94.72
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	91.89
2xut_A	524	Proton/peptide symporter family protein; transport	91.59

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.60  E-value=1.8e-12  Score=132.68  Aligned_cols=286  Identities=11%  Similarity=0.006  Sum_probs=182.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      +.+..++...++..+...+....+|.+.....-|..+++....+..+..++.+++.|.+.||++||++++.+.++..+. 
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~-  104 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG-  104 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH-
Confidence            3455566777777777788888888865554339999999999999999999999999999999999999888764332 


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                         ..+.... ...   .+  .+.+++..++.|.......++....+ .+    ..+++   +..++++..+....++.+
T Consensus       105 ---~~~~~~~-~~~---~~--~~~l~~~~~l~G~~~~~~~~~~~~~~-~~----~~~~~---~r~~~~~~~~~~~~~g~~  167 (438)
T 3o7q_A          105 ---AALFWPA-AEI---MN--YTLFLVGLFIIAAGLGCLETAANPFV-TV----LGPES---SGHFRLNLAQTFNSFGAI  167 (438)
T ss_dssp             ---HHHHHHH-HHT---TC--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----SSCST---THHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHhc-ccc---cc--HHHHHHHHHHHHhhHHHhhhhHHHHH-HH----HcCch---hHHHHHHHHHHHHHHHHH
Confidence               1111010 111   12  23344555566766666665554433 34    34443   688889999999999999


Q ss_pred             HhHHHHHHHH-hhcchh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q 010361          307 AGASLFGILL-SKYEPV-----------------------TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQS  362 (512)
Q Consensus       307 lGP~lgGlL~-s~~s~~-----------------------~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~  362 (512)
                      +||.++|.+. ...+..                       ....+. ......+...+    .......|+.+  ++.  
T Consensus       168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~----~~~~~~~p~~~--~~~--  238 (438)
T 3o7q_A          168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM-IIVAIVLLVAL----LIMLTKFPALQ--SDN--  238 (438)
T ss_dssp             HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHCCCCCCT--TTC--
T ss_pred             HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH-HHHHHHHHHHH----HHHHHcCCccc--ccc--
Confidence            9999999998 544320                       001110 00111111111    11111112111  000  


Q ss_pred             cCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHH-HHHh-CCCcchhHHHHHH
Q 010361          363 CCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAF-LTQR-GLNPSIIGGFSGL  440 (512)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~y-l~~l-Gls~~~iG~~~g~  440 (512)
                             +++++ +       ++.++.++..+++|.++..+...++++.....+...++.| +++. |+++...|.+.+.
T Consensus       239 -------~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  303 (438)
T 3o7q_A          239 -------HSDAK-Q-------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTG  303 (438)
T ss_dssp             -------CCCSS-T-------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             -------ccccc-c-------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence                   00000 0       1124566778889877776554444443323455667778 7764 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 010361          441 CASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS  474 (512)
Q Consensus       441 gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~  474 (512)
                      ..+++++|.++.+++.+|+|..+...++.....+
T Consensus       304 ~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~  337 (438)
T 3o7q_A          304 TMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA  337 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            9999999999999999999999887776654433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=7e-13  Score=136.01  Aligned_cols=296  Identities=13%  Similarity=-0.012  Sum_probs=181.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (512)
Q Consensus       147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v  226 (512)
                      +.+..++.+.++..++..++...+|.+..+. -+...++....+..+..++.+++.|.+.||++||++++.+.++..+. 
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~-  105 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV-  105 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH-
Confidence            4566678888888888888889999888777 77777899999999999999999999999999999999988765432 


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                         ..+..+.....   .+  .+.+++.-++.|.......++....+ .|    ..++   ++..++++..+....++.+
T Consensus       106 ---~~~~~~~~~~~---~~--~~~l~~~~~l~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~~g~~  169 (451)
T 1pw4_A          106 ---MLFMGFVPWAT---SS--IAVMFVLLFLCGWFQGMGWPPCGRTM-VH----WWSQ---KERGGIVSVWNCAHNVGGG  169 (451)
T ss_dssp             ---HHHHHHCHHHH---SS--SSHHHHHHHHHHHHHHHTHHHHHHHH-HT----TCTT---THHHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHhhhhcc---cc--HHHHHHHHHHHHHHhhhccchHHHHH-HH----HCCc---hhhhHHHHHHHHHHHHHHH
Confidence               11111100001   11  12344445566666666655555433 23    4444   3789999999999999999


Q ss_pred             HhHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361          307 AGASLFGILLSKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (512)
Q Consensus       307 lGP~lgGlL~s~~s-~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (512)
                      +||.++|.++...+ ......+.....+.   ..++   ....+  ++.++.++.+ ..++ .++..++..+........
T Consensus       170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~---~~~~---~~~~~--~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~  239 (451)
T 1pw4_A          170 IPPLLFLLGMAWFNDWHAALYMPAFCAIL---VALF---AFAMM--RDTPQSCGLP-PIEE-YKNDYPDDYNEKAEQELT  239 (451)
T ss_dssp             SHHHHHHHHHHHTCCSTTCTHHHHHHHHH---HHHH---HHHHC--CCSSTTTCCC-SCTT-TCCC-------------C
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH---HHHH---HHhhc--cCCHhhcCCC-Chhh-hcccccccchhhhhcccc
Confidence            99999999888776 44433332221111   1111   11111  1111110000 0000 000000000000000000


Q ss_pred             HHHh-HhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh--Ch
Q 010361          386 IKLG-WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL--GI  461 (512)
Q Consensus       386 i~eG-~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl--G~  461 (512)
                      .++- ++..+++|.++..+...+++......+....+.|+++ .|+++...|++.+..++++++|.++.+++.+|+  |.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  319 (451)
T 1pw4_A          240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN  319 (451)
T ss_dssp             CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             cccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1111 4566788876665444333332213455567777776 799999999999999999999999999999999  88


Q ss_pred             hhHHHHHHH
Q 010361          462 LKAGAAGLI  470 (512)
Q Consensus       462 ~ragl~~l~  470 (512)
                      .+...++..
T Consensus       320 ~~~~~~~~~  328 (451)
T 1pw4_A          320 RGATGVFFM  328 (451)
T ss_dssp             HHHHHHHHH
T ss_pred             chhHHHHHH
Confidence            776655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.34  E-value=2.9e-12  Score=129.20  Aligned_cols=261  Identities=15%  Similarity=0.092  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHH
Q 010361          150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (512)
Q Consensus       150 ~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls  229 (512)
                      ..++.+.+++.++..++...+|.+..+..-+...++....+..+..++.+++.|.+.||++||+++..+.++..+.    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~----   78 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA----   78 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH----
Confidence            3567889999999999999999876554448889999999999999999999999999999999999888765432    


Q ss_pred             HHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhH
Q 010361          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (512)
Q Consensus       230 ~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP  309 (512)
                      ..+..+.   .    +  .+.+++..++.|.......+.....+ .|    ..+++   +..++++..+....++.++||
T Consensus        79 ~~~~~~~---~----~--~~~l~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~---~~~~~~~~~~~~~~~g~~~~~  141 (375)
T 2gfp_A           79 TLVAVTT---S----S--LTVLIAASAMQGMGTGVGGVMARTLP-RD----LYERT---QLRHANSLLNMGILVSPLLAP  141 (375)
T ss_dssp             HHHHHHH---H----H--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHTS---SCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh---c----c--HHHHHHHHHHHHHHHHhhhhhHHHHH-HH----HCCHH---HHHHHHHHHHHHHHHHHHhhH
Confidence            1111111   1    1  12334444555666665555554433 23    33332   577899999999999999999


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHh
Q 010361          310 SLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG  389 (512)
Q Consensus       310 ~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG  389 (512)
                      .++|.+....+......+...   ..+...    .... ...|+.   ++.+        +++++           .+++
T Consensus       142 ~~~~~l~~~~~~~~~~~~~~~---~~~~~~----~~~~-~~~~~~---~~~~--------~~~~~-----------~~~~  191 (375)
T 2gfp_A          142 LIGGLLDTMWNWRACYLFLLV---LCAGVT----FSMA-RWMPET---RPVD--------APRTR-----------LLTS  191 (375)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHH---HHHHHH----CCCC-CSSCCC---STTT--------CCCCC-----------TTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHH---HHHHHH----HHHH-HHCccc---CCCC--------ccccc-----------HHHH
Confidence            999999876543222211111   111100    0001 011111   1000        00000           1234


Q ss_pred             HhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 010361          390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (512)
Q Consensus       390 ~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~  461 (512)
                      ++..+++|.++......+++......+....+.|+++ .|+++...|.+.+..++++++|.++.+++.+|.|.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666765554333333222212333444556665 79999999999999999999999999999999886

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.34  E-value=1.2e-09  Score=114.05  Aligned_cols=161  Identities=11%  Similarity=-0.015  Sum_probs=118.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC-ChhHHHHHHHHHHHHHHHccccceeeecc-cCChhHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL-----HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYIC  217 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l-----~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR-~~Rr~vmi~  217 (512)
                      |++.++.++...++..++-.....-+|.|+...     ++ |...++.......+..++..++.|.+.|| ++||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            567889999999999999998888899999887     77 99999999999999999999999999999 899999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHH
Q 010361          218 LNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL  297 (512)
Q Consensus       218 ~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l  297 (512)
                      +.++..+.      .+...  ..   .+  .+.+++..++.|.......+.....+ .||    .++++ .....+.+..
T Consensus        91 ~~~~~~~~------~~~~~--~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~----~~~~~-~~r~~~~~~~  151 (491)
T 4aps_A           91 GGVLIMLG------HIVLA--LP---FG--ASALFGSIILIIIGTGFLKPNVSTLV-GTL----YDEHD-RRRDAGFSIF  151 (491)
T ss_dssp             HHHHHHHH------HHHHH--SC---CS--TTHHHHHHHHHHHHHHHHHHHHHHHH-HHH----SSSCT-THHHHHHHHH
T ss_pred             HHHHHHHH------HHHHH--Hh---hh--HHHHHHHHHHHHHHHHhccchHHHHH-HHH----cCccc-ccceeeehHH
Confidence            87654321      11121  11   12  12344445556665555555544333 343    33321 2467788888


Q ss_pred             HHHHHHHHHHhHHHHHHHHhhcchhhH
Q 010361          298 NRIDLLCEIAGASLFGILLSKYEPVTC  324 (512)
Q Consensus       298 ~~Idl~~kilGP~lgGlL~s~~s~~~~  324 (512)
                      .....++.++||.++|.+....+....
T Consensus       152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~  178 (491)
T 4aps_A          152 VFGINLGAFIAPLIVGAAQEAAGYHVA  178 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            889999999999999999987765443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.78  E-value=1.4e-08  Score=105.00  Aligned_cols=77  Identities=12%  Similarity=0.015  Sum_probs=64.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv  221 (512)
                      ++|+++.+....++...+-.+...-+|+++....+ |..+++.......+..++.+|+.|.+.||++|||++...-++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~   82 (417)
T 2cfq_A            5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG   82 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            67788888888888777777766678888877667 888888888888999999999999999999999998876543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.61  E-value=1.5e-06  Score=91.34  Aligned_cols=162  Identities=9%  Similarity=-0.075  Sum_probs=110.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHHccccceeeeccc-CChhHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-------SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYI  216 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-------Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-~Rr~vmi  216 (512)
                      +++.++.++...++..++.......+|.++...++       |...++.......+..++..+++|.+.||+ +||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            56789999999999999999888889998876544       777888888889999999999999999999 9999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHH
Q 010361          217 CLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV  296 (512)
Q Consensus       217 ~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~  296 (512)
                      .+.++..+.      .+.... ..   .+  .+.+++..++.|.......+.....+ .||    .++++........+.
T Consensus        90 ~~~~~~~~~------~~~~~~-~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~----~~~~~r~~~~~~~~~  152 (524)
T 2xut_A           90 WLSLIYCVG------HAFLAI-FE---HS--VQGFYTGLFLIALGSGGIKPLVSSFM-GDQ----FDQSNKSLAQKAFDM  152 (524)
T ss_dssp             HHHHHHHHH------HHHHHH-TS---SC--HHHHHHHHHHHHHHHHTTHHHHHHHH-HHT----CSTTTTTHHHHHHHH
T ss_pred             HHHHHHHHH------HHHHHH-hc---cc--HHHHHHHHHHHHHhccccchhHHHHH-HHH----cCccchHHHHHHHHH
Confidence            876553221      111111 11   01  23344555566666666555544433 343    333211123445555


Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcchhh
Q 010361          297 LNRIDLLCEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       297 l~~Idl~~kilGP~lgGlL~s~~s~~~  323 (512)
                      ......+..++||.++|.+....+...
T Consensus       153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~  179 (524)
T 2xut_A          153 FYFTINFGSFFASLSMPLLLKNFGAAV  179 (524)
T ss_dssp             HHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            778888889999999999988666433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.04  E-value=0.00018  Score=73.25  Aligned_cols=161  Identities=14%  Similarity=0.041  Sum_probs=110.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc--CChhHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYICLNTV  221 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~--~Rr~vmi~~dlv  221 (512)
                      +++.++.+....++..++......-+|.++....+ +....+.+.....+..++..+..|.+.||+  +||+.+...-++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT  329 (451)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            67889999999999999998888889999888777 888889988888999999999999999999  888887665433


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      ..+     +.++.+  .... ..+  .+..++..++.|.............+     ...+++   ++..++++....+.
T Consensus       330 ~~~-----~~~~~~--~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~---~~~g~~~~~~~~~~  391 (451)
T 1pw4_A          330 LVT-----IATIVY--WMNP-AGN--PTVDMICMIVIGFLIYGPVMLIGLHA-----LELAPK---KAAGTAAGFTGLFG  391 (451)
T ss_dssp             HHH-----HHHHHT--TSCC-TTC--HHHHHHHHHHHHHHHTHHHHHHHHHH-----HHTSCT---THHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHH--HHhc-ccC--HHHHHHHHHHHHHHHhchHHHHHHHH-----HHHhch---hhhhhHHHHHHHHH
Confidence            211     111111  1111 011  12223333344443223222222212     124554   37899999999999


Q ss_pred             HH-HHHHhHHHHHHHHhhcchhh
Q 010361          302 LL-CEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       302 l~-~kilGP~lgGlL~s~~s~~~  323 (512)
                      .+ +..+||.++|.+....+...
T Consensus       392 ~~~g~~~~~~~~g~l~~~~g~~~  414 (451)
T 1pw4_A          392 YLGGSVAASAIVGYTVDFFGWDG  414 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHH
Confidence            99 99999999999999877544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.98  E-value=0.0026  Score=65.75  Aligned_cols=53  Identities=15%  Similarity=0.046  Sum_probs=44.1

Q ss_pred             HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHH
Q 010361          426 QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAM  478 (512)
Q Consensus       426 ~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~~L~~  478 (512)
                      ..+.+...........++.++.+++++.++.+|+|..+....+.....+++..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~  358 (491)
T 4gc0_A          306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS  358 (491)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence            56888888888888888999999999999999999999888777766665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.41  E-value=0.0034  Score=63.53  Aligned_cols=155  Identities=8%  Similarity=-0.078  Sum_probs=101.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSA-IALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~-~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq  222 (512)
                      +++.++.+....++..........-.|.| +....+ +....+.+.....+..++..+..|.+.||++||+++..+-++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            67788999999999888888888888888 777767 8888999988888999999999999999999999887776543


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhh-hhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGV-AVERDWAVLLAGINRPIALAKANAVLNRID  301 (512)
Q Consensus       223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~i-averdWVp~Lv~~~~~~~L~~aNs~l~~Id  301 (512)
                      .+    .+.+  ..  ...   +   ...++..++.+.......+.... ..|      ..++    +-..+.+... ..
T Consensus       336 ~~----~~~~--~~--~~~---~---~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~-~~  390 (438)
T 3o7q_A          336 MA----LCLI--SA--FAG---G---HVGLIALTLCSAFMSIQYPTIFSLGIK------NLGQ----DTKYGSSFIV-MT  390 (438)
T ss_dssp             HH----HHHH--HH--HCC---H---HHHHHHHHHHHHHHTTHHHHHHHHHHS------SCGG----GHHHHHHHHH-HT
T ss_pred             HH----HHHH--HH--HcC---C---cHHHHHHHHHHHHHHHHHHHHHHHHHh------hccc----cccchhhHHH-HH
Confidence            22    1111  11  111   1   11222223334333322222222 122      2222    3333334333 55


Q ss_pred             HHHHHHhHHHHHHHHhhcc-hhhH
Q 010361          302 LLCEIAGASLFGILLSKYE-PVTC  324 (512)
Q Consensus       302 l~~kilGP~lgGlL~s~~s-~~~~  324 (512)
                      .+...+||.+.|.+....+ ....
T Consensus       391 ~~g~~~~~~~~g~l~~~~g~~~~~  414 (438)
T 3o7q_A          391 IIGGGIVTPVMGFVSDAAGNIPTA  414 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHTSSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHH
Confidence            6889999999999999876 4443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.62  E-value=0.023  Score=58.12  Aligned_cols=80  Identities=11%  Similarity=0.019  Sum_probs=61.1

Q ss_pred             hhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361          392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (512)
Q Consensus       392 ~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~  470 (512)
                      +++++|-++......++++.........+..|+++ .|+++.+.|++.+...++..+|..+.+++.+|+|..|...++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~   81 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            46777766654443334432213344578888875 79999999999999999999999999999999999998776655


Q ss_pred             H
Q 010361          471 F  471 (512)
Q Consensus       471 ~  471 (512)
                      .
T Consensus        82 ~   82 (417)
T 2cfq_A           82 G   82 (417)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.56  E-value=0.014  Score=60.38  Aligned_cols=162  Identities=13%  Similarity=-0.035  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH-H
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA-Q  226 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~-v  226 (512)
                      +..++...++...........+|.++....+ +....+.+.....+..++.++..|.+.||++||+.....-+.-... .
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~  364 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA  364 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence            4555655555555555666678888887776 6566677777777888888999999999999886543211110110 0


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (512)
Q Consensus       227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki  306 (512)
                      .++..+..+.............+...+..++.+.......+.....+     ....+++   ....+.+.......+...
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~-----~~~~p~~---~~g~~~g~~~~~~~~g~~  436 (491)
T 4aps_A          365 GLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVT-----TKLAPKA---FNSQMMSMWFLSSSVGSA  436 (491)
T ss_dssp             HHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHH-----HHHTTTT---CSSSSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHhCCHH---HHHHHHHHHHHHHHHHHH
Confidence            11111111110000000111112223333444544444333332222     2245543   466778888888888999


Q ss_pred             HhHHHHHHHHhh
Q 010361          307 AGASLFGILLSK  318 (512)
Q Consensus       307 lGP~lgGlL~s~  318 (512)
                      +||.++|.+...
T Consensus       437 i~~~~~~~~~~~  448 (491)
T 4aps_A          437 LNAQLVTLYNAK  448 (491)
T ss_dssp             HHHHHGGGGGGS
T ss_pred             HHHHHHHHHhcc
Confidence            999998887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=94.72  E-value=0.011  Score=58.77  Aligned_cols=157  Identities=10%  Similarity=-0.020  Sum_probs=97.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.++...++...+......-.|.++.+..+ +....+.......+..++.++..|.+.||.+| +.....-... 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~~~~~~~~-  274 (375)
T 2gfp_A          197 GNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LMWQSVICCL-  274 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HHHHHHHHHH-
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence            34678888888888888888888888888877666 77788888888888889999999999999877 2222221100 


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                         .....+........   .+  .+..++..++.+.......+.....+.+     ..+    ++..++++.......+
T Consensus       275 ---~~~~~~~~~~~~~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~-----~~p----~~~g~~~g~~~~~~~~  337 (375)
T 2gfp_A          275 ---LAGLLMWIPDWFGV---MN--VWTLLVPAALFFFGAGMLFPLATSGAME-----PFP----FLAGTAGALVGGLQNI  337 (375)
T ss_dssp             ---HTSSSSSHHHHHHH---HH--HHHHHHHHHHHHHHHHHTSSTTHHHHHT-----HHH----HHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhhhcc---cc--HHHHHHHHHHHHHHHHHhhHHHHHHHHH-----hCC----cccchHHHHHHHHHHH
Confidence               00000001110000   00  1112233334444444433333322221     333    2678899999999999


Q ss_pred             HHHHhHHHHHHHHhhcc
Q 010361          304 CEIAGASLFGILLSKYE  320 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s  320 (512)
                      +..+||.++|.+....+
T Consensus       338 g~~~~~~~~g~l~~~~~  354 (375)
T 2gfp_A          338 GSGVLASLSAMLPQTGQ  354 (375)
T ss_dssp             HHHCCSTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCc
Confidence            99999999999876543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=91.89  E-value=5.1  Score=40.70  Aligned_cols=122  Identities=14%  Similarity=-0.039  Sum_probs=64.1

Q ss_pred             ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHH
Q 010361          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAG  259 (512)
Q Consensus       180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg  259 (512)
                      +............+..++....++.++||++||+.++..-.+..+.    ...+.......  ..+  ...+....+...
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~----~~~l~~~~~~~--~~~--~~~~~~~~~~~~  381 (491)
T 4gc0_A          310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG----MFSLGTAFYTQ--APG--IVALLSMLFYVA  381 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH----HHHHHHHHHTT--CCH--HHHHHHHHHHHH
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH----HHHHHHHHhcc--cch--HHHHHHHHHHHH
Confidence            5555556666667778888899999999999999988776554332    11111111111  111  111111111111


Q ss_pred             HHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 010361          260 AVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS  317 (512)
Q Consensus       260 ~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s  317 (512)
                          .+...... +.--+.+.+.+.+   ....+.+.......++.+++|.+...+..
T Consensus       382 ----~~~~~~~~-~~~~~~~E~fPt~---~R~~~~g~~~~~~~~~~~i~~~~~p~l~~  431 (491)
T 4gc0_A          382 ----AFAMSWGP-VCWVLLSEIFPNA---IRGKALAIAVAAQWLANYFVSWTFPMMDK  431 (491)
T ss_dssp             ----HHHTTTTH-HHHHHHHHSSCTT---THHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred             ----HHHhHHHH-HHHHHHHHhCCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11111110 0001122245442   56778888888888888888877766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=91.59  E-value=0.83  Score=47.31  Aligned_cols=58  Identities=12%  Similarity=0.041  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHH-hC------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHH
Q 010361          416 PGSLMTAFLTQ-RG------LNPSIIGGFSGLCASMGVAATFLSAYLVRRL-GILKAGAAGLIFQA  473 (512)
Q Consensus       416 ~~~l~v~yl~~-lG------ls~~~iG~~~g~gavgGLlGt~lap~L~rRl-G~~ragl~~l~~Q~  473 (512)
                      ....+..|+.+ .|      +++.++|++.++..++.+++.++.+++.+|+ |..|...++.....
T Consensus        31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34566677764 78      9999999999999999999999999999999 99998777665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	512
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.46
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.4
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.64
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=4.6e-12  Score=126.26  Aligned_cols=278  Identities=13%  Similarity=0.029  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010361          164 QLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPT  242 (512)
Q Consensus       164 ri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~  242 (512)
                      ....++.|.+ .+ .+ |.-+.+....+..+...+.+++.|.++||++||+++..+.++..+..++. +   ++....  
T Consensus        42 ~~~~~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~-~---~~~~~~--  113 (447)
T d1pw4a_          42 KNFALAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM-G---FVPWAT--  113 (447)
T ss_dssp             TSHHHHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-H---HCHHHH--
T ss_pred             HHHHHHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhc-c---ccchhh--
Confidence            3455666643 23 35 88899999999999999999999999999999999998887654431111 1   110111  


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch-
Q 010361          243 SSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEP-  321 (512)
Q Consensus       243 ~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s~~s~-  321 (512)
                       .+  ...+++.-++.|.......++....+ .||    .++   ++..++++.......+..++||.+++.+....+. 
T Consensus       114 -~~--~~~~~~~~~~~g~~~~~~~~~~~~~i-~~~----~~~---~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w  182 (447)
T d1pw4a_         114 -SS--IAVMFVLLFLCGWFQGMGWPPCGRTM-VHW----WSQ---KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW  182 (447)
T ss_dssp             -SS--SSHHHHHHHHHHHHHHHTHHHHHHHH-HTT----CTT---THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred             -hh--HHHHHHHHHHHHHhhhhhhhHHHHHH-HHH----HHh---hcccccccccccccchhhhhhhhhhhhHhhhhhcc
Confidence             11  12234444455555555444444333 343    333   2789999999999999999999999998876543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhH
Q 010361          322 VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPA  401 (512)
Q Consensus       322 ~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~a  401 (512)
                      .....+.....   +...++   .....+.+  ++.+... ..++.+++...+.++..+.........+++.+++|.+..
T Consensus       183 ~~~~~~~~~~~---~~~~~~---~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
T d1pw4a_         183 HAALYMPAFCA---ILVALF---AFAMMRDT--PQSCGLP-PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWY  253 (447)
T ss_dssp             TTCTHHHHHHH---HHHHHH---HHHHCCCS--STTTCCC-SCTTTCCC-------------CCTHHHHHHTSSCHHHHH
T ss_pred             cccchhhhhhH---HHHHHH---HHHhcccc--hhhcccc-hhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHH
Confidence            22222211111   111111   11111111  1000000 000000000000000001111112335567778887666


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 010361          402 SLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (512)
Q Consensus       402 sla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l  469 (512)
                      .....+++..+...+....+.|+.+ .|+++...|...+...+++++|.++.+++.+|++..+.....+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  322 (447)
T d1pw4a_         254 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  322 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence            5443333332212344456667665 7999999999999999999999999999999998665444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=2.9e-12  Score=123.84  Aligned_cols=290  Identities=12%  Similarity=-0.017  Sum_probs=158.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +||+|+.+...+++..++..++.-.+|+++.+..+ |..++|+...+..++.++.+|+.|.++||++|||+++...++..
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            57899999999999999999998889999988888 99999999999999999999999999999999999998876654


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      +.    ..+........     ......++...+.+..............     .....++ ..+..+++.........
T Consensus        85 ~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~  149 (417)
T d1pv7a_          85 VM----FAPFFIFIFGP-----LLQYNILVGSIVGGIYLGFCFNAGAPAV-----EAFIEKV-SRRSNFEFGRARMFGCV  149 (417)
T ss_dssp             HT----HHHHHHHTHHH-----HHHTTCHHHHHHTTTTGGGGGTTHHHHH-----HHHHHHH-HHHHSCCHHHHHHHHHH
T ss_pred             HH----HHHHHHhhhhh-----hHHHHHHHHHHHhhhcccccccchhhcc-----cccccch-hhhhHHHHHHHhhhhcc
Confidence            32    11111110000     0000011111111111111111111111     0011110 12344566677777788


Q ss_pred             HHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhH
Q 010361          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (512)
                      ..++||.++|.+....+........    .......+   ......  ++....++.++..+   +..+..       . 
T Consensus       150 ~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~---~~~~~~-------~-  209 (417)
T d1pv7a_         150 GWALGASIVGIMFTINNQFVFWLGS----GCALILAV---LLFFAK--TDAPSSATVANAVG---ANHSAF-------S-  209 (417)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHH----HHHHHHHH---HHHSSC--CCSCSSSCSSHHHH---SCCCCC-------C-
T ss_pred             ccccccccccccccccccccccchh----hHHHHHHH---HHHHHh--cccccchhhhhhhh---hhcccc-------c-
Confidence            8899999999998865432211111    11111111   111111  11111110000000   000000       0 


Q ss_pred             HHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHH----HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010361          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT----QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (512)
Q Consensus       384 ~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~----~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl  459 (512)
                         ....+...+++..+...............+......+..    +.+.+....+...+..+++++++..+.+++.+|.
T Consensus       210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  286 (417)
T d1pv7a_         210 ---LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI  286 (417)
T ss_dssp             ---HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ---ccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccc
Confidence               111122233443333222211111110112222222222    2455677889999999999999999999999999


Q ss_pred             ChhhHHHHHHHHH
Q 010361          460 GILKAGAAGLIFQ  472 (512)
Q Consensus       460 G~~ragl~~l~~Q  472 (512)
                      |..+....+....
T Consensus       287 ~~~~~~~~~~~~~  299 (417)
T d1pv7a_         287 GGKNALLLAGTIM  299 (417)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHH
Confidence            9998877665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.0013  Score=63.80  Aligned_cols=163  Identities=13%  Similarity=0.014  Sum_probs=101.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (512)
Q Consensus       145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~  223 (512)
                      +++.++.+....++..........-.|.++....+ +....+.......+..++..+..|.+.||..|++.....-+.-.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT  326 (447)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHH
Confidence            55667777777788877777777778888888777 88888888888889999999999999999988765444332211


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (512)
Q Consensus       224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~  303 (512)
                      .   ..+.+  ....... ..+  .+..++..++.+.............. .|    +.++   +....+++.......+
T Consensus       327 ~---~~~~~--~~~~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~p~---~~~g~~~g~~~~~~~~  390 (447)
T d1pw4a_         327 L---VTIAT--IVYWMNP-AGN--PTVDMICMIVIGFLIYGPVMLIGLHA-LE----LAPK---KAAGTAAGFTGLFGYL  390 (447)
T ss_dssp             H---HHHHH--HHTTSCC-TTC--HHHHHHHHHHHHHHHTHHHHHHHHHH-HH----TSCT---THHHHHHHHHHHHHHH
T ss_pred             H---HHHHH--HHHHhcc-ccc--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HcCH---HHHHHHHHHHHHHHHH
Confidence            1   11111  1111111 111  11122223333332222222221111 12    4454   2678899988887666


Q ss_pred             -HHHHhHHHHHHHHhhcchhh
Q 010361          304 -CEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       304 -~kilGP~lgGlL~s~~s~~~  323 (512)
                       +.+++|.++|.+....|...
T Consensus       391 ~g~~~~~~~~g~~~~~~g~~~  411 (447)
T d1pw4a_         391 GGSVAASAIVGYTVDFFGWDG  411 (447)
T ss_dssp             HHHHHHHHHHHHHHHSSCSHH
T ss_pred             HHHHHHHHHHHHHHHHhChHH
Confidence             67889999999998877543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00057  Score=64.29  Aligned_cols=154  Identities=10%  Similarity=-0.041  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHH
Q 010361          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP----SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (512)
Q Consensus       149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~----Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~  224 (512)
                      .+.++.................+.+......    +....+.......+..++.....|.+.||.+|++++..+-++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~  301 (417)
T d1pv7a_         222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV  301 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHH
Confidence            3444444444444444444444444433332    445556666777788889999999999999999988777544321


Q ss_pred             HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHH-HHHHH
Q 010361          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN-RIDLL  303 (512)
Q Consensus       225 ~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~-~Idl~  303 (512)
                          .  .+...  ..   .+  .+..++..++.+.......+.....+.+     .+++   +...++++... ....+
T Consensus       302 ----~--~~~~~--~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~  360 (417)
T d1pv7a_         302 ----R--IIGSS--FA---TS--ALEVVILKTLHMFEVPFLLVGCFKYITS-----QFEV---RFSATIYLVCFCFFKQL  360 (417)
T ss_dssp             ----H--HHHHH--TC---CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCG---GGHHHHHHHHHTTTHHH
T ss_pred             ----h--hhccc--cc---cc--cchhhHHHHHHHHHHHHHHHHHHHHHHH-----HCCH---hHHHHHHHHHHHHHHHH
Confidence                1  11111  11   11  1233444445555555555544443332     4554   25677777654 45668


Q ss_pred             HHHHhHHHHHHHHhhcchhh
Q 010361          304 CEIAGASLFGILLSKYEPVT  323 (512)
Q Consensus       304 ~kilGP~lgGlL~s~~s~~~  323 (512)
                      +..+||.++|.+....|...
T Consensus       361 g~~i~~~~~G~l~~~~g~~~  380 (417)
T d1pv7a_         361 AMIFMSVLAGNMYESIGFQG  380 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHCHHH
Confidence            89999999999999887544