Citrus Sinensis ID: 010395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
Protein Sequence
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR
Secondary Structure (PSIPRED)
ccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgsipdpgelselnplsfdeFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISrgqelgdgevddgDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAalsecvdpAKFVMEAISevfpvdkrsdksgndlGWACVLVLESLipvmvdpvigkmrmlvtpSVKEKAKEIAERWKASLEerggienvktpdvHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLglgdkmpelISRGQQLDAVHFTYEvglvdkfppvpLLKAFLKDAKKAAVSIledpnnagRAAHLAARKEQSALRAVIKCIEDyklqgefppenLKKRLEQLEKAKtekkkpaavpatkrtrasnggpmppakagrltnayvssfpapptfvrspshtqypagvtayasppavygsrsppyayspeaapplagsypgapmnypayggygnglapayqqayyr
Flexible Loop (DISEMBL)
mgsipdpgelselnpLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQtldtqtkasldvlkkrevtidgsveiAMEKLEDRTEATlnsisrgqelgdgevDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFpvdkrsdksgNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASleerggienvktpdvHTFLQLLVTFgivkkedvdLYRKLvvgsawrkqmpKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDyklqgefppenlKKRLEQLEKaktekkkpaavpatkrtrasnggpmppAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR
Low Complexity Region (SEG)
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQelgdgevddgdgllMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPllkaflkdakkaaVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLekaktekkkpaavpatkRTRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRsppyayspeaapplaGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR
Disordered region (IsUnstruct)
************************TSLMTSCTLLWKELSDHFTSL*************************LDVLKKREVTIDGSV******************************DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKR***SGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILE*****************SALRAVIKCIEDYKLQ*****************************************************************************************************************NYPAYGGYGNGLAPAY******
Disordered Region (DISOPRED)
*****************FDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQ****************************************************************************YCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPV*******GNDLGWACVLVLESLIPVMV**************VKEKAKEIAERWKA*L********VKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKD************************KEQSALRAVIKCIEDYKLQGEFPPEN********************************************************************************************************************************
Disordered Region (DISEMBL)
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEK***********************PMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR
Disordered Region (DISPRO)
******PGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR************DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKT**************************************PAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLxxxxxxxxxxxxxxxxxxxxxTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	511	2.2.26 [Sep-21-2011]
P0DH90	609	Protein FRIGIDA OS=Arabid	no	no	0.493	0.413	0.273	2e-15
Q67Z93	314	Inactive protein FRIGIDA	no	no	0.256	0.417	0.255	1e-05

>sp|P0DH90|FRIGI_ARATH Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 33/285 (11%)

Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
           C  M ++G  K++     +  +L   +P+AL    +PAKFV++ I + +   +R+    +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208

Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
            +  A    +L+LES +   + P  GK ++ +   +K++A+  A  W+  L   GG+   
Sbjct: 209 PMSSARQVSLLILESFL---LMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265

Query: 245 KTPDVHTFLQLLVTFGI---VKKED-VDLYR----KLVVGSAWRKQMPKLAVSLGLGDKM 296
           +  D    L L+  FG+    +  D +DL R      + G+  R Q     VS G+ +  
Sbjct: 266 EKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMVS-GIVESS 324

Query: 297 PELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHL-- 354
              I RG  ++A+   Y  G+ DKF    +L +FLK +K       E    A R A    
Sbjct: 325 ---IKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSK-------ESFERAKRKAQSPL 374

Query: 355 ----AARKEQSALRAVIKCIEDYKLQ--GEFPPENLKKRLEQLEK 393
               AA K+ + L +V++C+E +KL    E P   +K+++  LEK
Sbjct: 375 AFKEAATKQLAVLSSVMQCMETHKLDPAKELPGWQIKEQIVSLEK 419

Required for the regulation of flowering time in the late-flowering phenotype. Increases RNA levels of 'FLOWERING LOCUS C'. Variants with an early-flowering phenotype (Including cv. Columbia, cv. Landsberg Erecta and cv. Wassilewskija) show loss-of-function mutations of FRI.
Arabidopsis thaliana (taxid: 3702)

>sp|Q67Z93|FRIG0_ARATH Inactive protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
           C  M ++G  K++     +  +L   +P+AL    +PAKFV++ I + +   +R+    +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208

Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
            +  A    +L+LES    ++ P  GK ++ +   +K++A+  A  W+  L   GG+   
Sbjct: 209 PMSSARQVSLLILESF---LLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265

Query: 245 KTPDVHTFLQLLVTFGI 261
           +  D    L L+  FG+
Sbjct: 266 EKMDARGLLLLVACFGV 282

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	511
255552183	520	Protein FRIGIDA, putative [Ricinus commu	1.0	0.982	0.830	0.0
224099807	507	predicted protein [Populus trichocarpa]	0.972	0.980	0.838	0.0
225432666	522	PREDICTED: protein FRIGIDA-like [Vitis v	0.994	0.973	0.791	0.0
147790518	524	hypothetical protein VITISV_022061 [Viti	0.984	0.959	0.784	0.0
356575851	524	PREDICTED: uncharacterized protein LOC10	1.0	0.975	0.740	0.0
356536009	530	PREDICTED: uncharacterized protein LOC10	1.0	0.964	0.739	0.0
449492578	518	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.994	0.980	0.777	0.0
401710192	519	frigida-like protein [Medicago sativa]	0.998	0.982	0.726	0.0
297830970	531	hydroxyproline-rich glycoprotein family	0.964	0.928	0.727	0.0
339830666	532	FRIGIDA [Coffea arabica]	0.984	0.945	0.693	0.0

>gi|255552183|ref|XP_002517136.1| Protein FRIGIDA, putative [Ricinus communis] gi|223543771|gb|EEF45299.1| Protein FRIGIDA, putative [Ricinus communis]

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/520 (83%), Positives = 463/520 (89%), Gaps = 9/520 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGEL+EL   SFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL+ KI
Sbjct: 1   MGSIPDPGELTELTQPSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKQKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGD---GEVDDG 117
           QTLDTQTKASL  L+KREVTIDGSVEIA+E+L++  EA L S+       D   GEVD+G
Sbjct: 61  QTLDTQTKASLANLRKREVTIDGSVEIALERLDEHKEAALKSLENPDSCDDHPDGEVDNG 120

Query: 118 DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
           +GLL IL S CLKME+  FW+ +  KKKEIE LR+ +P ALSECVDP +FV+EAISEVFP
Sbjct: 121 EGLLQILKSLCLKMESMEFWQLITRKKKEIEVLRSQIPLALSECVDPCRFVLEAISEVFP 180

Query: 178 VDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           VDKR +KSGNDLGWACVL LESLIPV+VDPVIGK R+LVTPSVKE+AKEIAE WK SLEE
Sbjct: 181 VDKRCEKSGNDLGWACVLSLESLIPVVVDPVIGKCRVLVTPSVKERAKEIAETWKRSLEE 240

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGGIENVKTPDVHTFLQ LVTFGIVKKEDVDLYRKLVV SAWRKQMPKLA+SLGLGDKMP
Sbjct: 241 RGGIENVKTPDVHTFLQHLVTFGIVKKEDVDLYRKLVVASAWRKQMPKLALSLGLGDKMP 300

Query: 298 ----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAH 353
               ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAA SILEDP+N GRAAH
Sbjct: 301 DMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAASILEDPDNTGRAAH 360

Query: 354 LAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRAS 413
           LAARKEQSALRAVIKCIE+YKL+ EFPPENLKKRLEQLEK KTEKK+PAAVPA KRTRAS
Sbjct: 361 LAARKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKTKTEKKRPAAVPANKRTRAS 420

Query: 414 NGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSP--PYA 471
           NGGPMPPAKAGRLTNAYVSSFPAPP FVRSPSHTQYP  + AY SPPAVYG+RSP  PYA
Sbjct: 421 NGGPMPPAKAGRLTNAYVSSFPAPPAFVRSPSHTQYPTALPAYPSPPAVYGTRSPPSPYA 480

Query: 472 YSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR 511
           YSPEAAPP+AGSYPGAP++YPAYGGYGNG APAYQQAYYR
Sbjct: 481 YSPEAAPPIAGSYPGAPLSYPAYGGYGNGFAPAYQQAYYR 520

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099807|ref|XP_002311627.1| predicted protein [Populus trichocarpa] gi|222851447|gb|EEE88994.1| predicted protein [Populus trichocarpa]

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/507 (83%), Positives = 452/507 (89%), Gaps = 10/507 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGEL+EL   SFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL+HKI
Sbjct: 1   MGSIPDPGELTELTRPSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKHKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR-GQELGDGEVDDGDG 119
           QTLD QTKASL  LKKREVTIDGSVEIA+E++E+  E  L S+S    E  DGEVDDGDG
Sbjct: 61  QTLDNQTKASLASLKKREVTIDGSVEIALERVEEHRELALKSLSDPDYENPDGEVDDGDG 120

Query: 120 LLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVD 179
             M+L S CL ME+R FW FV+TKKKEIE LR  +P AL+ECVDPAKFV+EAISEVFPVD
Sbjct: 121 SFMVLKSLCLTMESRDFWNFVITKKKEIEILRKQIPLALAECVDPAKFVIEAISEVFPVD 180

Query: 180 KRSDKSG---NDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLE 236
           KR ++SG   NDLGWACVL+LESLIPV+VDPVIGK R+LVTP+VKE+AKEIAE WK SLE
Sbjct: 181 KRGERSGEKGNDLGWACVLILESLIPVVVDPVIGKSRLLVTPTVKERAKEIAETWKKSLE 240

Query: 237 ERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 296
           ERGGIENVKTPDVHTFLQ LVTFGIVKK+DVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM
Sbjct: 241 ERGGIENVKTPDVHTFLQHLVTFGIVKKDDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 300

Query: 297 P----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAA 352
           P    ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAA S+LEDP N GRAA
Sbjct: 301 PDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAASVLEDPENTGRAA 360

Query: 353 HLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRA 412
           HLAARKEQSALRAVIKC+EDYKL+  FPPENLKKRLEQLEKAKTEKK+PAAVPA KRTRA
Sbjct: 361 HLAARKEQSALRAVIKCVEDYKLESRFPPENLKKRLEQLEKAKTEKKRPAAVPANKRTRA 420

Query: 413 SNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSP--PY 470
           SNGGPMPPAKAGRLTNAYVSSFPAPP FVRSPSHTQYP GV AY SPPAVYGSRSP  PY
Sbjct: 421 SNGGPMPPAKAGRLTNAYVSSFPAPPAFVRSPSHTQYPTGVPAYPSPPAVYGSRSPPSPY 480

Query: 471 AYSPEAAPPLAGSYPGAPMNYPAYGGY 497
           AYSPEAA P+AGSYP AP+NYPAYGGY
Sbjct: 481 AYSPEAAAPIAGSYPVAPLNYPAYGGY 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432666|ref|XP_002282465.1| PREDICTED: protein FRIGIDA-like [Vitis vinifera]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/524 (79%), Positives = 466/524 (88%), Gaps = 16/524 (3%)

Query: 1   MGSIPDPGELS-ELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHK 59
           MGSIPDPG++S ELN  SFD+FQ+QTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL++K
Sbjct: 1   MGSIPDPGDISGELNQPSFDDFQKQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKNK 60

Query: 60  IQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDG 119
            QTLD  TK SL VLKKREVTIDGSVEIA+ K+E+  EA L ++ +G +  DGEVDD +G
Sbjct: 61  FQTLDHHTKESLGVLKKREVTIDGSVEIALGKVEESREAALIALLKGAQ--DGEVDDSEG 118

Query: 120 LLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVD 179
           LL+ L S+CLKM+++ FW+F+  +KKE++ LR   P AL+ECVDPAKFV+EAISEVFPVD
Sbjct: 119 LLLKLKSFCLKMDSKEFWRFITARKKELDALRAQTPEALAECVDPAKFVLEAISEVFPVD 178

Query: 180 KRSDKS--GNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           KR +KS   NDLGWACVLVLESLIPV+VDPV+GK R+LVTPSVKE+AK+IAE WKASL++
Sbjct: 179 KRVEKSERSNDLGWACVLVLESLIPVVVDPVLGKSRLLVTPSVKERAKDIAETWKASLDQ 238

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGGIENVKTPDVHTFLQ LVTFGIVK+EDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 
Sbjct: 239 RGGIENVKTPDVHTFLQHLVTFGIVKEEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMA 298

Query: 298 ----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAH 353
               EL++RGQQ+DAVHFTYEVGLVDKFPPVPLLKAFL+D+KKAA SILEDPNN+GRA +
Sbjct: 299 DMIEELVNRGQQVDAVHFTYEVGLVDKFPPVPLLKAFLRDSKKAATSILEDPNNSGRAVN 358

Query: 354 LAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRAS 413
           LA RKEQSALRAVIKCIE+YKL+ EFPPENLKKRLEQLEKAKT+KK+PAAVPA KRTRAS
Sbjct: 359 LAGRKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKAKTDKKRPAAVPANKRTRAS 418

Query: 414 NGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAY----ASPPAVYGSRSP- 468
           NGGPMPPAKAGRLTNAYVSSFPA PTF+RSPSHTQYPA V AY     + PA+YGSRSP 
Sbjct: 419 NGGPMPPAKAGRLTNAYVSSFPAAPTFIRSPSHTQYPAAVPAYPYDRPAAPAMYGSRSPP 478

Query: 469 --PYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYY 510
             PYAYSPEAAPPLAGSYPGAP+NYPAYGGYGNG+APAYQQAYY
Sbjct: 479 ANPYAYSPEAAPPLAGSYPGAPINYPAYGGYGNGMAPAYQQAYY 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790518|emb|CAN69766.1| hypothetical protein VITISV_022061 [Vitis vinifera]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/519 (78%), Positives = 459/519 (88%), Gaps = 16/519 (3%)

Query: 1   MGSIPDPGELS-ELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHK 59
           MGSIPDPG++S ELN  SFD+FQ+QTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL++K
Sbjct: 1   MGSIPDPGDISGELNXPSFDDFQKQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKNK 60

Query: 60  IQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDG 119
            QTLD  TK SL VLKKREVTIDGSVEIA+ K+E+  EA L ++ +G +  DGEVDD +G
Sbjct: 61  FQTLDHHTKESLGVLKKREVTIDGSVEIALGKVEESREAALIALLKGAQ--DGEVDDSEG 118

Query: 120 LLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVD 179
           LL+ L S+CLKM+++ FW+F+  +KKE++ LR   P AL+ECVDPAKFV+EAISEVFPVD
Sbjct: 119 LLLKLKSFCLKMDSKEFWRFITARKKELDALRAQTPEALAECVDPAKFVLEAISEVFPVD 178

Query: 180 KRSDKS--GNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           KR +KS   NDLGWACVLVLESLIPV+VDPV+GK R+LVTPSVKE+AK+IAE WKASL++
Sbjct: 179 KRVEKSERSNDLGWACVLVLESLIPVVVDPVLGKSRLLVTPSVKERAKDIAETWKASLDQ 238

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGGIENVKTPDVHTFLQ LVTFGIVK+EDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 
Sbjct: 239 RGGIENVKTPDVHTFLQHLVTFGIVKEEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMA 298

Query: 298 ----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAH 353
               EL++RGQQ+DAVHFTYEVGLVDKFPPVPLLKAFL+D+KKAA SILEDPNN+GRA +
Sbjct: 299 DMIEELVNRGQQVDAVHFTYEVGLVDKFPPVPLLKAFLRDSKKAATSILEDPNNSGRAVN 358

Query: 354 LAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRAS 413
           LA RKEQSALRAVIKCIE+YKL+ EFPPENLKKRLEQLEKAKT+KK+PAAVPA KRTRAS
Sbjct: 359 LAGRKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKAKTDKKRPAAVPANKRTRAS 418

Query: 414 NGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAY----ASPPAVYGSRSP- 468
           NGGPMPPAKAGRLTNAYVSSFPA PTF+RSPSHTQYPA V AY     + PA+YGSRSP 
Sbjct: 419 NGGPMPPAKAGRLTNAYVSSFPAAPTFIRSPSHTQYPAAVPAYPYDRPAAPAMYGSRSPP 478

Query: 469 --PYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAY 505
             PYAYSPEAAPPLAGSYPGAP+NYPAYGGYGNGL  ++
Sbjct: 479 ANPYAYSPEAAPPLAGSYPGAPINYPAYGGYGNGLEASF 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575851|ref|XP_003556050.1| PREDICTED: uncharacterized protein LOC100805780 [Glycine max]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/524 (74%), Positives = 440/524 (83%), Gaps = 13/524 (2%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGELSEL   SFDEFQRQTSLMTSCTLLWKELSDHF+SLEQ+L  KS AL+ KI
Sbjct: 1   MGSIPDPGELSELTQPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQDLNHKSEALKRKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELG--DGEVDDGD 118
            TLD  T  SL +L  RE ++D +++IA+  L+ R  A L+++    +    DGEVDD  
Sbjct: 61  HTLDNSTSDSLRLLDHRETSLDATLQIALRTLDTRRTAALSALLHDADDTSPDGEVDDTA 120

Query: 119 GLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPV 178
           GL++ L S+CL+M+A GF+ FV  KKKE++ LR  +P AL+ECVDPAKFV+EAISEVFPV
Sbjct: 121 GLVLKLKSFCLRMDAFGFFAFVSAKKKELDGLRAEMPVALAECVDPAKFVLEAISEVFPV 180

Query: 179 DKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEER 238
           DKR +K+G+DLGWACVLVLESLIPV+VDPVIGK R+LVTP+VKE A EIAE WK+SLE+R
Sbjct: 181 DKRGEKAGHDLGWACVLVLESLIPVVVDPVIGKSRLLVTPTVKEHATEIAETWKSSLEDR 240

Query: 239 GGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP- 297
           GG+EN+KTPDVHTFLQ +VTFGIVK +D DLYRKLV+ SAWRKQMPKLA+SLGL  +MP 
Sbjct: 241 GGVENLKTPDVHTFLQHVVTFGIVKNDDSDLYRKLVIASAWRKQMPKLALSLGLAQQMPD 300

Query: 298 ---ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHL 354
              ELIS+GQQLDAVHFTYEVGLV+KFPPVPLLK+FLKDAKK A SILEDPNNAGRAA+L
Sbjct: 301 MIEELISKGQQLDAVHFTYEVGLVEKFPPVPLLKSFLKDAKKVAASILEDPNNAGRAAYL 360

Query: 355 AARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRAS- 413
           AARKEQSALRAVIKCIE+YKL+ EFPPENLKKRL+QLEK KTEK+KP AVPA KRTRAS 
Sbjct: 361 AARKEQSALRAVIKCIEEYKLEDEFPPENLKKRLDQLEKVKTEKRKPVAVPANKRTRASN 420

Query: 414 -NGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPP--- 469
            NGGPMPPAKAGRLTNAYVSSFPA PTFVRSPSH QYPA +  Y SPP +YGSRSPP   
Sbjct: 421 GNGGPMPPAKAGRLTNAYVSSFPAAPTFVRSPSHGQYPAALPPYPSPPHMYGSRSPPANP 480

Query: 470 -YAYSPEAAPPLAGSYPGAPMNYP-AYGGYGNGLAPAYQQAYYR 511
             AYSPE AP +AGSYP APMNYP AYGGYGN LAP YQQAYYR
Sbjct: 481 YAAYSPEPAPAIAGSYPAAPMNYPHAYGGYGNVLAPTYQQAYYR 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536009|ref|XP_003536533.1| PREDICTED: uncharacterized protein LOC100779694 [Glycine max]

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/530 (73%), Positives = 441/530 (83%), Gaps = 19/530 (3%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGELSEL   SFDEFQRQTSLMTSCTLLWKELSDHF+SLEQ+L  KS AL+ KI
Sbjct: 1   MGSIPDPGELSELTQPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQDLNHKSEALKRKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQE-----LGDGEVD 115
           +TLD  T  SL +L +RE ++D +++IA+  L+ R  A L+++    +       DGEVD
Sbjct: 61  RTLDNTTSDSLRLLDRRETSLDATLQIALRTLDTRRTAALSALLTDADDIINSSPDGEVD 120

Query: 116 DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEV 175
           D  GL++ L S+CL+M+A GF+ FV  KKKE++ LR  +P AL+ECVDPAKFV+EAISEV
Sbjct: 121 DTTGLILKLKSFCLRMDAFGFFAFVSAKKKELDGLRAEMPVALAECVDPAKFVLEAISEV 180

Query: 176 FPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL 235
           FPVDKR DK+G+DLGWACVLVLESLIPV+VDPVIGK R+LVTP VKE+A EIAE WK SL
Sbjct: 181 FPVDKRGDKAGHDLGWACVLVLESLIPVVVDPVIGKSRLLVTPIVKEQATEIAETWKTSL 240

Query: 236 EERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDK 295
           EERGG+ENVKTPDVHTFLQ +VTFGIVK ED DLYRKLV+ SAWRKQMPKLA+SLGL  +
Sbjct: 241 EERGGVENVKTPDVHTFLQHVVTFGIVKNEDSDLYRKLVIASAWRKQMPKLALSLGLAQQ 300

Query: 296 MP----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRA 351
           MP    ELIS+GQQLDAVHFTYEVGLV+KFPPVPLLK+FLKDAKK A SILEDPNNAGRA
Sbjct: 301 MPDMIEELISKGQQLDAVHFTYEVGLVEKFPPVPLLKSFLKDAKKVAASILEDPNNAGRA 360

Query: 352 AHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEK---AKTEKKKPAAVPATK 408
           A+LAARKEQSALRAVIKCIE+YKL+ EFPPENLKKRL+QLEK    KTEK+KP AVPA K
Sbjct: 361 AYLAARKEQSALRAVIKCIEEYKLEDEFPPENLKKRLDQLEKVKTVKTEKRKPVAVPANK 420

Query: 409 RTRA--SNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSR 466
           RTRA  SNGGPMPPAKAGRLTNAYVSSFPA PTFVRSPSH QYPA +  Y SPP +YGSR
Sbjct: 421 RTRASNSNGGPMPPAKAGRLTNAYVSSFPAAPTFVRSPSHGQYPAALPPYPSPPHMYGSR 480

Query: 467 SPPY----AYSPEAAPPLAGSYPGAPMNY-PAYGGYGNGLAPAYQQAYYR 511
           SPP     AYSPE AP +AGSYP APMNY PAYGGYGN LAP YQQAYYR
Sbjct: 481 SPPTNPYAAYSPEPAPAIAGSYPAAPMNYPPAYGGYGNVLAPTYQQAYYR 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492578|ref|XP_004159038.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101210012 [Cucumis sativus]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/521 (77%), Positives = 453/521 (86%), Gaps = 13/521 (2%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MG+IPDPGELSEL   SFDEFQRQTSLMTSCTLLWKELSDHFT+LEQ+L KKS ALRHKI
Sbjct: 1   MGTIPDPGELSELTHPSFDEFQRQTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR-GQELGDGEVDDGDG 119
           QTLD QTK SLD L+KREV+I GSV+IA+ K+E   EA L ++ + G E  +GEVDD DG
Sbjct: 61  QTLDHQTKESLDELEKREVSIQGSVQIALGKVEKSMEAALKALEKDGDE--NGEVDDDDG 118

Query: 120 LLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVD 179
           LL+ L S+CL+M++ GFW+F+  KKKE+E LR  +  AL+EC+DP +FV+EAISEVFP+D
Sbjct: 119 LLLKLKSFCLEMDSGGFWRFITGKKKELEALRAKIHLALAECIDPPRFVLEAISEVFPLD 178

Query: 180 KRSDKS--GNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           KR +KS  GNDLGWACVLVLESLIPV+VDPVIGK R+LVTPS+KE+AKEIAE WKASLEE
Sbjct: 179 KRVEKSDGGNDLGWACVLVLESLIPVVVDPVIGKSRILVTPSMKERAKEIAETWKASLEE 238

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGGIENV+TPDVHTFLQ LVTFGIVK+EDVD+YRKLVVGSAWRKQMPKLAVSLGLGD MP
Sbjct: 239 RGGIENVRTPDVHTFLQHLVTFGIVKREDVDMYRKLVVGSAWRKQMPKLAVSLGLGDIMP 298

Query: 298 ----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAH 353
               ELISRGQQLDAVHFTYEVGL DK PPVPLLKA+LKDAKKAA +I EDPNN GRA H
Sbjct: 299 DMIEELISRGQQLDAVHFTYEVGLADKXPPVPLLKAYLKDAKKAAAAISEDPNNTGRAMH 358

Query: 354 LAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRAS 413
           LAARKEQSALRAVIKCIE+YKLQ EFPPENLKKRLEQLEK K EK+KPA VPA KRTRA+
Sbjct: 359 LAARKEQSALRAVIKCIEEYKLQAEFPPENLKKRLEQLEKVKVEKRKPAPVPANKRTRAN 418

Query: 414 NGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSP---PY 470
           +GGPMPPAKAGRLTNAYVSS+PA P FVRSPSH+QYPAGV  Y SPP++YGSRSP   PY
Sbjct: 419 SGGPMPPAKAGRLTNAYVSSYPAAPAFVRSPSHSQYPAGVPPYHSPPSMYGSRSPPTNPY 478

Query: 471 AYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR 511
           +YSPEAA P AGS+P  PM+YPAYGGYGN +APAYQ AYYR
Sbjct: 479 SYSPEAA-PHAGSFPSPPMSYPAYGGYGNAMAPAYQPAYYR 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|401710192|gb|AFP97615.1| frigida-like protein [Medicago sativa]

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/520 (72%), Positives = 438/520 (84%), Gaps = 10/520 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGEL+EL   SFD+FQRQTSLMTSCTLLWKELSDHF+SLEQ+L  KS AL  KI
Sbjct: 1   MGSIPDPGELTELTQPSFDDFQRQTSLMTSCTLLWKELSDHFSSLEQDLLNKSEALNRKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQEL---GDGEVDDG 117
           ++LD QT  SL++L+ RE T+D +++IA+  +++RTEA L ++SR +E    GDGEVD+G
Sbjct: 61  RSLDNQTNESLNLLRHRESTLDDALQIALRDIDNRTEAALAALSRVREDVEDGDGEVDNG 120

Query: 118 DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
           +GL++ L S+CLKM+A GFW FV+ KKKE+E LR  +P AL EC+DPAKFV+EAISEVFP
Sbjct: 121 EGLMLKLKSFCLKMDALGFWGFVIGKKKELEGLRAEMPEALGECIDPAKFVLEAISEVFP 180

Query: 178 VDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           VDKR DKSGNDLGWACVLVLESL+PVMVDPV+ K RML TP+VK+ A ++AE+WK SLEE
Sbjct: 181 VDKRGDKSGNDLGWACVLVLESLVPVMVDPVL-KSRMLATPTVKKLANDVAEKWKVSLEE 239

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGG+ENVKTPDVHTFLQ  VTFGIV  +D+ LYRKLV+ SAWRK MPK A+SLGL ++MP
Sbjct: 240 RGGVENVKTPDVHTFLQHPVTFGIVDSDDLGLYRKLVIASAWRKHMPKPALSLGLENQMP 299

Query: 298 ----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAH 353
               ELIS+GQQLDAVHFT+EVGLV+KFPPVPLLK++LKDAKK A SILEDPNNAGRA +
Sbjct: 300 DMIEELISKGQQLDAVHFTFEVGLVEKFPPVPLLKSYLKDAKKVAASILEDPNNAGRAGY 359

Query: 354 LAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRA- 412
           LAARKEQSAL+AVIKCIE+Y L+ EFP E+LKKRLEQLEK K EK+K   VPA KRTRA 
Sbjct: 360 LAARKEQSALKAVIKCIEEYNLEAEFPAESLKKRLEQLEKVKPEKRKQIVVPANKRTRAS 419

Query: 413 -SNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYA 471
            SNGGPMPPAKAGRLTNAYVSSFPA PTFVRSPSH QYPA +  Y SPP +YGSRSP YA
Sbjct: 420 NSNGGPMPPAKAGRLTNAYVSSFPAAPTFVRSPSHGQYPAALPPYPSPPHMYGSRSPSYA 479

Query: 472 YSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYYR 511
           YSPE AP +A SYP  PM+YPAYGGYGN LAP YQQAYYR
Sbjct: 480 YSPEPAPAIAASYPVPPMSYPAYGGYGNVLAPTYQQAYYR 519

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830970|ref|XP_002883367.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi|297329207|gb|EFH59626.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/511 (72%), Positives = 420/511 (82%), Gaps = 18/511 (3%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGS+PDPGEL+EL   SF+EFQ+QTSLMTSCTLLW+ELSDHFTSLEQNL KKS AL+  I
Sbjct: 1   MGSVPDPGELTELAQPSFEEFQKQTSLMTSCTLLWQELSDHFTSLEQNLMKKSEALKQMI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDG------EV 114
           +TLD QT+ SL+ LK+REVTID SVEI   K+ +R  A L S+ + ++ GDG      EV
Sbjct: 61  ETLDNQTQTSLESLKRREVTIDHSVEIVAGKVGERARAALESLEKARDGGDGSNDDSGEV 120

Query: 115 DDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISE 174
           DD +GLL  L S CLKM+ARGFW FV  +KKE+E LR+ +PAAL +CVDPA  V+EAISE
Sbjct: 121 DDEEGLLSALKSLCLKMDARGFWNFVTARKKELENLRSKIPAALVDCVDPAMLVLEAISE 180

Query: 175 VFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKAS 234
           VFPVDKR DK  ND GWACV++LESL PVMVDPVIGK R+LVTPSVKEKAKEIAE WKAS
Sbjct: 181 VFPVDKRGDKVSNDYGWACVVILESLTPVMVDPVIGKSRLLVTPSVKEKAKEIAETWKAS 240

Query: 235 LEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGD 294
           LEERG IENVKTPDVHTFLQ LVTFGIVK ED+ LYRKLVVGSAWRKQMPKLAVS+GLGD
Sbjct: 241 LEERGRIENVKTPDVHTFLQHLVTFGIVKSEDLALYRKLVVGSAWRKQMPKLAVSVGLGD 300

Query: 295 KMP----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGR 350
           +MP    ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKA+L+DAKK+A SI+E+ +N GR
Sbjct: 301 QMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEESSNTGR 360

Query: 351 AAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVPATKRT 410
             HL ARKEQSAL+AV+KCIE+YKL+ EFPPENLKKRL+QLEK KTEK+KPAAVPA KRT
Sbjct: 361 PTHLVARKEQSALKAVLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEKRKPAAVPANKRT 420

Query: 411 RASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPP-AVYGSRSPP 469
           RAS  GPMPPAKAGR+TNAYVSSFP    F+RSPSH+   A   AY SPP  VY +RSPP
Sbjct: 421 RASYNGPMPPAKAGRITNAYVSSFP----FIRSPSHSPQYASPAAYPSPPTTVYSNRSPP 476

Query: 470 YAYSPEAAPPLAGSYPGAPMNYPAYGGYGNG 500
           Y YSPE  P   GSY G+P+ YPAY GY NG
Sbjct: 477 YPYSPEIIP---GSYQGSPIGYPAYNGYCNG 504

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339830666|gb|AEK20760.1| FRIGIDA [Coffea arabica]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/539 (69%), Positives = 429/539 (79%), Gaps = 36/539 (6%)

Query: 1   MGSIPDPGELSELNPL------SFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSA 54
           MGSI DPGEL++  P       SFD+FQRQTSLMTSCTLLWKELSDHFTSLEQNL+KKSA
Sbjct: 1   MGSIADPGELTQTQPPPPQPPPSFDDFQRQTSLMTSCTLLWKELSDHFTSLEQNLEKKSA 60

Query: 55  ALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATL------NSISRGQE 108
           AL+ K++TLD QT  SLD L +RE T+   + +A+EK+E      +      N +S G E
Sbjct: 61  ALKAKLKTLDFQTNTSLDELNRRESTLSTVLSMALEKVEKSKAGAILSVAQQNGVSNGAE 120

Query: 109 LGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFV 168
            G+GEVDD  G+ + L ++C++M+ + FW FVV +KKE+E LR  +P AL ECVDP KFV
Sbjct: 121 SGEGEVDDSLGVFLKLKTFCIRMDFKNFWGFVVVRKKELESLRQEIPKALGECVDPPKFV 180

Query: 169 MEAISEVFPVDKRSDKSGN----------DLGWACVLVLESLIPVMVDPVIGKMRMLVTP 218
           +EAISEVFPVD R     +          DLGWACVL+LESL+PV+VDP++GK RMLVTP
Sbjct: 181 LEAISEVFPVDTRKGNDNSANNSNNNGNYDLGWACVLLLESLVPVLVDPMLGKKRMLVTP 240

Query: 219 SVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSA 278
           S+KEKA+EIAE WK SLE+RGG+ENVKTPDVHTFLQ LVTFGIVK+ED+ LYRKLVV SA
Sbjct: 241 SIKEKAEEIAEIWKKSLEDRGGVENVKTPDVHTFLQHLVTFGIVKEEDLGLYRKLVVASA 300

Query: 279 WRKQMPKLAVSLGLGDKMP----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDA 334
           WRKQMPKLAVSLGL DKMP    ELISRGQQ+DAVHF +EV LVD+FPPVPLLKAFLKDA
Sbjct: 301 WRKQMPKLAVSLGLADKMPDIIEELISRGQQVDAVHFIFEVDLVDEFPPVPLLKAFLKDA 360

Query: 335 KKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKA 394
           KK A SILEDPNN GRAAH+AA+KEQSA+RAVIKCIE+YKL+ EFPPENLKKRLEQLEK 
Sbjct: 361 KKLATSILEDPNNTGRAAHMAAKKEQSAIRAVIKCIEEYKLEAEFPPENLKKRLEQLEKT 420

Query: 395 KTEKKKPAAVPATKRTRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVT 454
           KTEK+KP  VPA KRTRASNG  +PPAKAGRLTNAYVSSFPA PTFVRSPSH+ Y AGV 
Sbjct: 421 KTEKRKPVVVPANKRTRASNGEHVPPAKAGRLTNAYVSSFPAAPTFVRSPSHSPYHAGVP 480

Query: 455 AYASPPAVY--GSRSP-PYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQAYY 510
           AY SPPA+Y  GSRSP PY YSPEA       YPGAP+ YPAYGGYG+ +APAYQQ YY
Sbjct: 481 AYPSPPAIYGHGSRSPSPYVYSPEA-------YPGAPVTYPAYGGYGSPMAPAYQQPYY 532

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	511
TAIR|locus:2087872	532	AT3G22440 "AT3G22440" [Arabido	0.972	0.934	0.641	3.8e-165
TAIR|locus:2130429	532	AT4G14900 [Arabidopsis thalian	0.988	0.949	0.619	7.5e-160
TAIR|locus:1005716104	558	AT5G48385 "AT5G48385" [Arabido	0.520	0.476	0.315	3.4e-38
TAIR|locus:2171327	470	FRL1 "FRIGIDA like 1" [Arabido	0.491	0.534	0.256	4e-18
TAIR|locus:2826175	473	FRL2 "AT1G31814" [Arabidopsis	0.487	0.526	0.250	2.5e-15
TAIR|locus:2181251	948	AT5G27230 [Arabidopsis thalian	0.444	0.239	0.299	3e-14
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.428	0.185	0.248	1.3e-06

TAIR|locus:2087872 AT3G22440 "AT3G22440" [Arabidopsis thaliana (taxid:3702)]

 Score = 1607 (570.8 bits), Expect = 3.8e-165, P = 3.8e-165
 Identities = 331/516 (64%), Positives = 374/516 (72%)

Query:     1 MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
             MGS+PDPGEL+EL   SF+EFQ+QTSLMTSCTLLW+ELSDHFTSLEQNL KKS AL+  I
Sbjct:     1 MGSVPDPGELTELAQPSFEEFQKQTSLMTSCTLLWQELSDHFTSLEQNLMKKSEALKQMI 60

Query:    61 QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR-----GQXXXXXXXX 115
             +TLD QT+ SL+ LK+REVTID SVEI   K+ +R  A L S+ +     G         
Sbjct:    61 ETLDNQTQTSLESLKRREVTIDHSVEIVAGKVGERARAALESLEKARDGCGDGSNDDSGD 120

Query:   116 XXXXXXMI--LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAIS 173
                   ++  L S CLKM+ARGFW FV  +KKE+E LR+ +PAAL +CVDPA  V+EAIS
Sbjct:   121 VDDEEGLLSALKSLCLKMDARGFWNFVTARKKELENLRSKIPAALVDCVDPAMLVLEAIS 180

Query:   174 EVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKA 233
             EVFPVD R DK  ND GWACV++LESL PV+VDPVIGK R+LVTPSVKEKAKEIAE WK 
Sbjct:   181 EVFPVDTRGDKVSNDYGWACVVILESLTPVIVDPVIGKSRLLVTPSVKEKAKEIAETWKK 240

Query:   234 SLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLG 293
             SLEERG IENVKTPDVHTFLQ LVTFGIVK ED+ LYRKLVVGSAWRKQMPKLAVS+GLG
Sbjct:   241 SLEERGRIENVKTPDVHTFLQHLVTFGIVKSEDLALYRKLVVGSAWRKQMPKLAVSVGLG 300

Query:   294 DKMP----ELISRGQQLDAVHFTYEVGLVDKFPPVPXXXXXXXXXXXXXVSILEDPNNAG 349
             D+MP    ELISRGQQLDAVHFTYEVGLVDKFPPVP              SI+ED +N G
Sbjct:   301 DQMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEDSSNTG 360

Query:   350 RAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLXXXXXXXXXXXXXXXXXR 409
             RA HL ARKEQSAL+AV+KCIE+YKL+ EFPPENLKKRL+QL                 R
Sbjct:   361 RATHLVARKEQSALKAVLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEKRKPAAVPANKR 420

Query:   410 TRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPA-VYGSRXX 468
             TRAS  GPMPPAKAGR+TNAYVSSFP    F+RSPSH+   A   AY SPP  VY +R  
Sbjct:   421 TRASYNGPMPPAKAGRITNAYVSSFP----FIRSPSHSPQYASPAAYPSPPTTVYSNRSP 476

Query:   469 XXXXXXXXXXXXXGSYPGAPMNYPAYGGYGNGLAPA 504
                          GSY G+P+ YPAY GY NG  PA
Sbjct:   477 PYPYSPEIIP---GSYQGSPIGYPAYNGYCNGPVPA 509

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2130429 AT4G14900 [Arabidopsis thaliana (taxid:3702)]

 Score = 1557 (553.2 bits), Expect = 7.5e-160, P = 7.5e-160
 Identities = 324/523 (61%), Positives = 379/523 (72%)

Query:     1 MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
             M S PDPGEL + +  SF EFQ+Q SLMTSC LLWKELS+HFTS+EQNL KKS ALR  I
Sbjct:     1 MESSPDPGELIKSSQPSFFEFQKQASLMTSCNLLWKELSEHFTSMEQNLMKKSEALRQMI 60

Query:    61 QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQXXXXXXXXXXXXX 120
             +TLD QT++S+++LK REVTID SVEIA  K+E+R  A L+S+ + +             
Sbjct:    61 ETLDNQTQSSIELLKHREVTIDHSVEIAEGKVEERVRAALDSLEKARDCGDEDTGEVDDG 120

Query:   121 XMILM---SYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
               +L    S CLKM+ARGFW FV+ +KKE+E LR+ +P AL +CVDP K V+EA+SEVFP
Sbjct:   121 DGLLSALKSLCLKMDARGFWGFVIARKKELENLRSQIPVALVDCVDPPKLVLEAVSEVFP 180

Query:   178 VDKRS--DKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL 235
             VDKR   +K  ND GWACV++LESLIPVMVDPV+GK R+LVTPSVKEKAKEIAE WKASL
Sbjct:   181 VDKRGGGEKVSNDFGWACVVILESLIPVMVDPVMGKSRLLVTPSVKEKAKEIAETWKASL 240

Query:   236 EERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDK 295
             EERGGIENVKTPDVHTFLQ LVTFGIVKK+D+ LYRKLVVGSAWRKQMPKLAVS+GLGD+
Sbjct:   241 EERGGIENVKTPDVHTFLQHLVTFGIVKKDDLALYRKLVVGSAWRKQMPKLAVSVGLGDQ 300

Query:   296 MP----ELISRGQQLDAVHFTYEVGLVDKFPPVPXXXXXXXXXXXXXVSILEDPNNAGRA 351
             MP    ELI RGQQLDAVHFT+EVGLV  FPPVP               I +D NN+GR+
Sbjct:   301 MPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSGRS 360

Query:   352 AHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLXXXXXXXXXXXXXXXXXRTR 411
             AHL ARKEQSALRAV+KCIE+YKL+ EFPPENLKKRL+QL                 RTR
Sbjct:   361 AHLVARKEQSALRAVLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEKRKPAVIPANKRTR 420

Query:   412 ASNGGPMPPAKAGRLTNAYVSSFPAPP-TFVRSPSHT-QYPAGVTAYA-SPPAVYGSRXX 468
             AS  GPMPPAKAGR+TNAYVSSFP PP TF+RS SH+ QY  GV AY  SPP +Y +R  
Sbjct:   421 ASYSGPMPPAKAGRITNAYVSSFPPPPPTFIRSQSHSPQY--GVPAYTTSPPTIYSNRSP 478

Query:   469 XXXXXXXXXXXXXGSYPGAPMNYP-AYGGYGNGLAPAYQQAYY 510
                          GSY  +P++YP AYG Y + +A      Y+
Sbjct:   479 PYQYSPEAVH---GSYQTSPVSYPTAYGTYCSPVAAPPPPVYH 518

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1005716104 AT5G48385 "AT5G48385" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 3.4e-38, Sum P(3) = 3.4e-38
 Identities = 88/279 (31%), Positives = 140/279 (50%)

Query:   124 LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDK-RS 182
             L+  C  M++ G  KFV   +K +  L+  +P A     +PA  V++++   +P++   +
Sbjct:   175 LLKLCGDMDSTGLHKFVSDNRKNLASLKEEIPMAFRAAANPASLVLDSLEGFYPMEAPTA 234

Query:   183 D--KSGNDLGW--ACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEER 238
             D  K  N LG    C++++E L  ++       + ++++ +VK +AK IAE W   LE  
Sbjct:   235 DGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLAVVLSQNVKHRAKTIAEGWNPLLESL 294

Query:   239 G-GIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
                  N  + + H FLQLL TF IV     D   KL+   + R+Q  +L  SLGL +KMP
Sbjct:   295 DMDACNGNSLEAHAFLQLLATFAIVADFKEDELLKLIPMVSRRRQAAELCRSLGLAEKMP 354

Query:   298 E----LISRGQQLDAVHFTYEVGLVDKFPPVPXXXXXXXXXXXXXVSILEDPNNAGRAAH 353
                  L++ G+Q+DAV+  +   L ++F PV               S    P NA  A  
Sbjct:   355 GVIEVLVNSGKQIDAVNLAFAFELTEQFSPVSLLKSYLIEARRS--SPQGRPGNASPAVQ 412

Query:   354 LAAR-KEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQL 391
                  +E   L+ VIKCIE++ L+ ++P E L KR+ QL
Sbjct:   413 DEFNERELIGLKTVIKCIEEHSLEEQYPVEPLHKRILQL 451

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171327 FRL1 "FRIGIDA like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
 Identities = 70/273 (25%), Positives = 126/273 (46%)

Query:   124 LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD 183
             L + C K++  G  K+++    +   L   + AA+    D A  V++AI         S 
Sbjct:   101 LRALCEKIDGIGLIKYLIRIWDDETPLNQEVSAAIRYSPDTASMVLDAIEGSNYTPSSSG 160

Query:   184 KSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIEN 243
             +S  D+    VL++E LI +  +         +T   + +AK++A  WK+ +        
Sbjct:   161 RSF-DVRRVFVLLMEVLIEINAN---------ITVDTRNRAKKLAYHWKSKV-------G 203

Query:   244 VKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGL-----GDKMPE 298
             VK  +   FL L+  F +  + D +     V   A  KQ   +   +G+     G  +  
Sbjct:   204 VKPFEALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQATLVCNKIGVDRKRVGKLIKT 263

Query:   299 LISRGQQLDAVHFTYEVGLVDKFPPVPXXXXXXXXXXXXXVSILEDPNNAGRAAHLAARK 358
             L+  G+ + AV F YE G+ D+F P+P             + +  + N + ++ + A+ K
Sbjct:   264 LLDSGKPILAVKFMYECGMTDEFEPIPVLKSYIKDCREAALRVCVEDNYSLKSQNEASDK 323

Query:   359 EQSALRAVIKCIEDYKLQGEFPPENLKKRLEQL 391
             E SAL+ +IK I+D  L+ EF  E +++R+E+L
Sbjct:   324 EVSALKPLIKIIKDQNLESEFTQEKVEERVEEL 356

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2826175 FRL2 "AT1G31814" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 70/279 (25%), Positives = 127/279 (45%)

Query:   124 LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD 183
             L  +C K + +G   +++   ++   +   LP A+    +PA  V++AI   +     S 
Sbjct:    90 LRKFCEKNDGKGLGNYMIENSRKRLSINEELPNAIRCSENPAPLVLDAIEGSYHCSSPSS 149

Query:   184 KSGN---DLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGG 240
              S     D+    VL+LE+LI +  +         +T  ++E+A+ IA  WK ++   G 
Sbjct:   150 SSSARAIDVKRIFVLLLEALIEINAN---------LTNDLRERARTIAYDWKPNI---GN 197

Query:   241 IENVKTPDVHTFLQLLVTF---GIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGL----- 292
                 K  +   FL L+  F    +   E++  Y  L+  S + KQ   +   +GL     
Sbjct:   198 ----KPSEALGFLHLVAAFELGSLFSTEEICDYIFLI--SKY-KQATTICKKIGLDRNRI 250

Query:   293 GDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPXXXXXXXXXXXXXVSILEDPNNAGRAA 352
             G  + + +  G+ L A+ F YE  +V +F PV                +  + N + +  
Sbjct:   251 GVLVQKFLDTGRLLVAIRFIYENEMVGEFEPVSILKTSLKNSREAAKRVCAEGNYSLKVQ 310

Query:   353 HLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQL 391
             + A  KE SALRAVIK +++  ++ EF  E L++ +++L
Sbjct:   311 NEATDKELSALRAVIKVVKEKNIESEFMEEKLEECVKEL 349

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2181251 AT5G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 77/257 (29%), Positives = 113/257 (43%)

Query:   145 KEIEELRNALPAALSECV-DPAKFVMEAISEVFPVDKRSDKSGNDL--GWACVLVLESLI 201
             KE E+L NAL     +C  DPAK  ++    + P +         L    +C L+L  L 
Sbjct:   563 KESEDLSNAL-----KCTPDPAKLFLDTSMALCPTNTEGGYEFKMLITSASCSLLLNQLK 617

Query:   202 PVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL--EERGGIENVKTPDVHTFLQLLVTF 259
              ++  P IG       P VK  AK++A  WK  +   +R  +E      V  FLQ L  F
Sbjct:   618 KLL--PKIGH------P-VKGDAKKLAVYWKDKIAKSKRDQLE------VICFLQFLGIF 662

Query:   260 GIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP----ELISRGQQLDAVHFTYEV 315
             GIV +   D    L+  S W+   P L   LGL D +P     LI  G ++ A+ + Y  
Sbjct:   663 GIVSEFKADDLLGLLDNSYWQTVSPDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSF 722

Query:   316 GLVDKFPPVPXXXXXXXXXXXXXVS-ILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYK 374
             G+V +F PV                    +  N       A  ++  ALRA IKCI  +K
Sbjct:   723 GMVHRFQPVSAIINDSLRITKESAEKSYREAKNESTTQVAAIDRQVRALRAAIKCISCHK 782

Query:   375 LQGEFPPENLKKRLEQL 391
             L+ EF   +L+++++ L
Sbjct:   783 LESEFQLGDLEEQIKSL 799

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 59/237 (24%), Positives = 104/237 (43%)

Query:   152 NALPAALSECVDPAKFVMEAIS-EVFPVDKRSDKSGNDLGWACVLVLESLIPVMVD-PVI 209
             N +   L   +DPA +V+  ++ E+    +R +     LG A   V+++LIP++ + P +
Sbjct:   861 NEVFTGLQGMIDPASYVLNVVNDELLGAQQRGE-----LGLA-EPVIKTLIPLLEELPRV 914

Query:   210 GKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDL 269
              K     +  +   A ++A RW   +   G    +   +   FLQL+V +G+V     D 
Sbjct:   915 VKS----SKHLLSDALQVATRWSWMM---GNSTQMSPLEAWGFLQLIVAYGLVHATSQDN 967

Query:   270 YRKLVVGSAWRKQMPKLAVSLGLGDKMPELISRGQQLDAVHFTYEVGLVDKFPPVPXXXX 329
               +     A  KQ PKL  SLGL   MP L+ +   LD  H+   +  +  F  +     
Sbjct:   968 TLRFASYVAHFKQAPKLFESLGLSYAMPNLVKK--LLDERHYFMAIRFIFYFK-LKFNFS 1024

Query:   330 XXXXXXXXXVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKK 386
                      +++        R    A  ++ + L+ +I+ IED+KL  + P E + K
Sbjct:  1025 PLELLKDEIITLRVSTKEKRRLDSQAEDRDAAKLKDIIELIEDFKLDIDLPVELIVK 1081

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	511
pfam07899	293	pfam07899, Frigida, Frigida-like protein	1e-116
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  343 bits (882), Expect = e-116
 Identities = 146/302 (48%), Positives = 193/302 (63%), Gaps = 16/302 (5%)

Query: 111 DGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVME 170
                D +GL   L   C KM++RG  KFV+  +KE+  LR  +PAAL    DPAK V++
Sbjct: 2   SEPSSDEEGLNPELRRLCEKMDSRGLLKFVIENRKELASLREEVPAALRCAPDPAKLVLD 61

Query: 171 AISEVFPVDKRSDKSGN--DLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIA 228
           AI   +P D +  K     D+  +CVL+LE L+          +   ++P VKE+AK++A
Sbjct: 62  AIEGFYPPDSKGGKEDKMVDVRRSCVLLLEQLVR---------VNPPISPDVKEEAKKLA 112

Query: 229 ERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAV 288
             WKA LEE GG+EN K+ +   FLQLL  FG+V + D D   KL V  + RKQ P+L  
Sbjct: 113 VEWKAKLEEDGGVENGKSLEALGFLQLLAAFGLVSEFDQDELLKLFVMVSRRKQAPELCR 172

Query: 289 SLGLGDKMP----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILED 344
           SLGL DKMP    ELI RG+Q+DAV F YE GLVDKFPPV LLKA+L+DAKK+A  +  +
Sbjct: 173 SLGLADKMPDLIEELIKRGRQIDAVRFIYEFGLVDKFPPVSLLKAYLEDAKKSAKKVCRE 232

Query: 345 PNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAV 404
            N++ RA   A  KE +ALRAVIKCIED+KL+ E+P E L++R+E+LEKAK +KKK   V
Sbjct: 233 -NSSLRAQSEAIDKELAALRAVIKCIEDHKLESEYPLEPLEERIEELEKAKADKKKATEV 291

Query: 405 PA 406
            +
Sbjct: 292 AS 293

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 401 PAAVPATKRTRASNGGPMPPAKA--GRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYAS 458
               P T +       PM P  A  GR      ++  A P    +P   + PA     A 
Sbjct: 687 IQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPP-AAAPGRARPPAAAPGRAR 745

Query: 459 PPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYP 492
           PPA    R+ P A +P  A P A + PGAP   P
Sbjct: 746 PPAAAPGRARPPAAAPGRARPPAAA-PGAPTPQP 778

Length = 991

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 409 RTRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSP 468
             RA    P+                   P + +  +   Y      Y +PP VY +  P
Sbjct: 31  AERAQRAQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPP 90

Query: 469 P---YAYSPEAAPPLAGSYPGAP 488
           P   Y   P+  PP    YPG P
Sbjct: 91  PNSGYMADPQEPPP---PYPGPP 110

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 401  PAAVPATKRTRASNGGPMPPA-KAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASP 459
            P   P        +  P+PP   A R  +  + + PAPP     P+    P G    A P
Sbjct: 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPA---VPAGPATPGGPARPARP 2760

Query: 460  PAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPAYGGYGNGLAPA 504
            P   G  +P    +P A PP   + P       +     +   PA
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	511
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.21
KOG0260	1605	consensus RNA polymerase II, large subunit [Transc	88.9
KOG0260	1605	consensus RNA polymerase II, large subunit [Transc	88.9

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=5.5e-87  Score=674.72  Aligned_cols=275  Identities=48%  Similarity=0.749  Sum_probs=260.3

Q ss_pred             CccchHHHHHHHhhhcchHHHHHHHHhhhchHHHHHhhHHHHhhcCCChhhHHHHHhhcccCCCCCCC--CCCchhhHHH
Q 010395          116 DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD--KSGNDLGWAC  193 (511)
Q Consensus       116 ~~~~~~~~L~~lCe~MD~~gL~~fi~~~~ke~~~lr~Elp~ALr~ApDPAkLVLdai~~fy~~~~~~~--~~~~~~~~aC  193 (511)
                      ....++++|+.||++||++||++||++|+|++.+||+|||+||++|||||+||||||+|||+++.+.+  ....+.+|+|
T Consensus         7 ~~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~c   86 (290)
T PF07899_consen    7 VEVKPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRAC   86 (290)
T ss_pred             CCcchHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHH
Confidence            35568999999999999999999999999999999999999999999999999999999999876442  3355789999


Q ss_pred             HHHHHHhccccCCccccccCCCCChhHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHhcCCcccCHHHHHHH
Q 010395          194 VLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKL  273 (511)
Q Consensus       194 ilLLE~L~~~l~~p~~g~~~p~vs~~vkeeAk~lA~~WK~kl~~~g~~~~~~~lea~gFLqlLa~fGI~seFd~del~~L  273 (511)
                      |+|||+|++         .+|.++++||++|++||.+||++|+   ++++.+++|||||||||++|||+++||.|||++|
T Consensus        87 ilLLE~L~~---------~~~~is~~vke~A~~lA~~WK~~l~---~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~L  154 (290)
T PF07899_consen   87 ILLLEQLMR---------ISPEISPEVKEEAKKLAEEWKSKLD---GVNNENSLEALGFLQLLAAFGIVSEFDEDELLKL  154 (290)
T ss_pred             HHHHHHHhh---------cCCCCCHHHHHHHHHHHHHHHHHHH---hcccCCCHHHHHHHHHHHHcCCccccCHHHHHHH
Confidence            999999986         3578999999999999999999996   4467889999999999999999999999999999


Q ss_pred             hccccchhhhHHHHHHhCCCCchh----hhhhcCcchHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHhcCCCCch
Q 010395          274 VVGSAWRKQMPKLAVSLGLGDKMP----ELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAG  349 (511)
Q Consensus       274 v~~va~rkq~~eL~~sLGL~dKmp----~LI~kGk~IeAV~fi~aF~L~dkFpPvpLLK~yl~~akk~~~~~~~~g~~s~  349 (511)
                      |..+++|+|+++||++|||+||||    +||++||||+||+|||+|||+||||||||||+||+++|++++.++++++++ 
T Consensus       155 v~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-  233 (290)
T PF07899_consen  155 VVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-  233 (290)
T ss_pred             HHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-
Confidence            999999999999999999999999    999999999999999999999999999999999999999999999998888 


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhccCCCC
Q 010395          350 RAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAA  403 (511)
Q Consensus       350 ~a~~eA~~kEl~aLksViKcIEdhkLese~p~~~L~krI~qLEK~k~ekkr~~~  403 (511)
                      .+++++++||+++||+|||||||||||++||+++|++||.||||+|++|||+++
T Consensus       234 ~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~~kr~~~  287 (290)
T PF07899_consen  234 EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKADRKRAAE  287 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999999999999875

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.21  E-value=0.1  Score=49.98  Aligned_cols=78  Identities=21%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCcccCHHHHHHHhccccc-----hhhhHHHHHHhCCCCchh--hhhhcCcchHHHHHHHHhcCCCCCC
Q 010395          250 HTFLQLLVTFGIVKKEDVDLYRKLVVGSAW-----RKQMPKLAVSLGLGDKMP--ELISRGQQLDAVHFTYEVGLVDKFP  322 (511)
Q Consensus       250 ~gFLqlLa~fGI~seFd~del~~Lv~~va~-----rkq~~eL~~sLGL~dKmp--~LI~kGk~IeAV~fi~aF~L~dkFp  322 (511)
                      ...|+.+..|++..  |...+...+++...     +.-+.+.++.||..+..-  -|+.+|+.++|++||...+-++..|
T Consensus        45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~  122 (167)
T PF07035_consen   45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP  122 (167)
T ss_pred             HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC
Confidence            47788888999998  76666655554432     445677789999665544  6999999999999999999999998


Q ss_pred             ChHHHHH
Q 010395          323 PVPLLKA  329 (511)
Q Consensus       323 PvpLLK~  329 (511)
                      |.-+|.+
T Consensus       123 ~~~fLeA  129 (167)
T PF07035_consen  123 ARKFLEA  129 (167)
T ss_pred             HHHHHHH
Confidence            8776543

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]

Probab=88.90  E-value=1.5  Score=52.62  Aligned_cols=14  Identities=14%  Similarity=0.166  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHH
Q 010395          355 AARKEQSALRAVIK  368 (511)
Q Consensus       355 A~~kEl~aLksViK  368 (511)
                      .|=+-++.|..|+-
T Consensus      1336 VnyrhlaLl~dvmT 1349 (1605)
T KOG0260|consen 1336 VNYRHLALLCDVMT 1349 (1605)
T ss_pred             hhHHHHHHHHHHHh
Confidence            44444444444443

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]

Probab=88.90  E-value=1.4  Score=52.90  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=7.9

Q ss_pred             chhHHHHHHHHHHhcCCc
Q 010395          246 TPDVHTFLQLLVTFGIVK  263 (511)
Q Consensus       246 ~lea~gFLqlLa~fGI~s  263 (511)
                      +.|+.++.- +.-+||..
T Consensus      1241 ~Ie~~ml~~-~~l~G~~~ 1257 (1605)
T KOG0260|consen 1241 CIEANMLGD-MTLRGIPD 1257 (1605)
T ss_pred             HHHHhhhhh-cccCCccc
Confidence            445554433 34556543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	511
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 8e-10
 Identities = 48/316 (15%), Positives = 103/316 (32%), Gaps = 96/316 (30%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           + +   P  +           +    L+      W   SDH ++++  +    A LR  +
Sbjct: 189 LKNCNSPETV----------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 61  QTLDTQTKASLDVLKKREV------------------TIDGSV----------EIAMEKL 92
           +      +  L VL    V                  T    V           I+++  
Sbjct: 239 K--SKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 93  -----EDRTEATLNSI--SRGQELGDGEVDDGDGLLMILMSYCLK-MEARGFWKFVVTKK 144
                 D  ++ L      R Q+L   EV   +   + +++  ++   A   W     K 
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLAT--WDN--WKH 349

Query: 145 KEIEELRNALPAALSECVDPAK----FVMEAISEVFPVDKRSDKSGNDLGWACVLVLESL 200
              ++L   + ++L   ++PA+    F   ++   FP                     + 
Sbjct: 350 VNCDKLTTIIESSL-NVLEPAEYRKMFDRLSV---FPPS-------------------AH 386

Query: 201 IPVMVDPVIGKMRMLVTPSVKEKAKEIAERW-KASLEERGGIENVKT-PDVHTFLQLLVT 258
           IP ++      + ++    +K     +  +  K SL E+   E+  + P ++  L+L V 
Sbjct: 387 IPTIL------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVK 438

Query: 259 FGIVKKEDVDLYRKLV 274
                + +  L+R +V
Sbjct: 439 L----ENEYALHRSIV 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 59/436 (13%), Positives = 132/436 (30%), Gaps = 118/436 (27%)

Query: 33  LLW------KELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLD-------------- 72
           L W      +E+   F  +E+ L+     L   I+T   Q                    
Sbjct: 67  LFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 73  VLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQEL---GDGEVDDGDG---L-LMILM 125
           V  K  V+        ++      +A L  +   + +   G      G G   + L + +
Sbjct: 125 VFAKYNVSR-------LQPYLKLRQA-LLELRPAKNVLIDGVL----GSGKTWVALDVCL 172

Query: 126 SYCL--KMEARGFW---KFVVTKKKEIEELRN---ALPAALSECVDPAKFVMEAISEVFP 177
           SY +  KM+ + FW   K   + +  +E L+     +    +   D +  +   I  +  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 178 VDKR--SDKSGNDLGWACVLVLESL-IPVMVDPVIGKMRMLVT---PSVKEKAKEIAERW 231
             +R    K   +    C+LVL ++      +      ++L+T     V +         
Sbjct: 233 ELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 232 KASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLG 291
            +       +   +         LL+ +  +     DL R+++  +      P   +S+ 
Sbjct: 289 ISLDHHSMTLTPDEV------KSLLLKY--LDCRPQDLPREVLTTN------P-RRLSI- 332

Query: 292 LGDKMPELISRGQ-----QLDAVHFTYEVGLVDKFPPVPLLKA-------FLKDAK-KAA 338
           + + + + ++          D +    E  L +   P    +        F   A     
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEP-AEYRKMFDRLSVFPPSAHIPTI 390

Query: 339 V-SIL-----------------------EDPNNAGRAAH---LAARKEQSALRAV-IKCI 370
           + S++                       + P  +  +     L  + +     A+    +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 371 EDYKLQGEFPPENLKK 386
           + Y +   F  ++L  
Sbjct: 451 DHYNIPKTFDSDDLIP 466

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00