Citrus Sinensis ID: 010416

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
MGGENVQIEKSNNNSSSSSSPSASGPPPTCFSHFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKPLLSI
ccccccHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccEEEcccccccccccHHHHHHHHHHHHEEEEcHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
cccccccEEEcccccccccccccccccccHHHHHHHHHHccccHHHHHHHccccccHHcEccHHHHHHHHHHHHHcccEEEEcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mggenvqieksnnnsssssspsasgppptcfshfwssalraktltapsvrtndgegllRRLGLFELVLIGVGASVGAGIFVVTGtvardagpgvTISFLLAGAASVLNALCYAELasrfpavvGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELfpffkenipswighggeeflggtlsiNILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAfevdvsnwspfapngfkeiLTGATVVFFAYVGFDavansaeeskkpqrdlpigiLGSLLICAALYVGVSLVLtgmvpykfldedaplsdafASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYlglgrdgllpsifakvhpkrhtpvhsQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRwkdrtsrndssrltSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRhvsykpllsi
MGGENVQIEksnnnsssssspsasgPPPTCFSHFWSSALRAKTLtapsvrtndgegLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALrwkdrtsrndssrltsawRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRhvsykpllsi
MGGENVQIEKsnnnsssssspsasgpppTCFSHFWSSALRAKTLTAPSVRTNDgegllrrlglfelvlIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTlsinilapillalltivlCWGVGESSVLNSCMTvvkviivivviFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFgavagltttllvglYVQSrlylglgrdgllPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYillivavviavlaSAMLCLRHVSYKPLLSI
*****************************CFSHFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVA************LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRT******RLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKP****
********************************HFWSSALRA*******************LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD**********TSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKPLLS*
***************************PTCFSHFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVAN********QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR*********TSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKPLLSI
***************S********GPPPTCFSHFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHV********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGGENVQIEKSNNNSSSSSSPSASGPPPTCFSHFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKPLLSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query511 2.2.26 [Sep-21-2011]
Q9C5D6569 Cationic amino acid trans yes no 0.937 0.841 0.733 0.0
Q8W4K3 600 Cationic amino acid trans no no 0.771 0.656 0.394 6e-78
Q797A7461 Uncharacterized amino aci yes no 0.778 0.863 0.426 1e-77
Q9ASS7 635 Cationic amino acid trans no no 0.778 0.626 0.377 2e-70
Q8GYB4 609 Cationic amino acid trans no no 0.769 0.645 0.367 3e-66
Q6DCE8 622 Low affinity cationic ami N/A no 0.772 0.635 0.353 1e-65
O07576465 Uncharacterized amino aci no no 0.782 0.860 0.382 1e-64
Q09143 622 High affinity cationic am yes no 0.767 0.630 0.355 1e-63
P30823 624 High affinity cationic am yes no 0.767 0.628 0.354 2e-63
B5D5N9 657 Low affinity cationic ami no no 0.761 0.592 0.351 9e-63
>sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1 Back     alignment and function desciption
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/484 (73%), Positives = 423/484 (87%), Gaps = 5/484 (1%)

Query: 29  TCFSHFWSSALRAKTLTAPS----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTG 84
           T FSHF +SALR+K+L  PS    VR+  G+ L+RRLGLF+L+L+GVGAS+GAG+FVVTG
Sbjct: 16  TWFSHFRASALRSKSLPPPSSQTAVRSTSGDSLVRRLGLFDLILLGVGASIGAGVFVVTG 75

Query: 85  TVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144
           TVARDAGPGVTISFLLAGA+ VLNALCYAEL+SRFPAVVGGAY+Y+Y+AFNE+TAFLVF 
Sbjct: 76  TVARDAGPGVTISFLLAGASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFV 135

Query: 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204
           QLMLDYHIGAASI+RSLASY V++LELFP  K +IP W+G  G+E LGG LS+NILAPIL
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMG-SGKELLGGLLSLNILAPIL 194

Query: 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTG 264
           LALLT+VLC GV ESS +NS MT  KV+IV+VVI AGAFE+DV+NWSPFAPNGFK +LTG
Sbjct: 195 LALLTLVLCQGVRESSAVNSVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTG 254

Query: 265 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 324
           ATVVFF+YVGFDAVANSAEESK PQRDLPIGI+GSLL+C +LY+GV LVLTGMVP+  L 
Sbjct: 255 ATVVFFSYVGFDAVANSAEESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLS 314

Query: 325 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKV 384
           EDAPL++AF+S+G+K+VS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIF+++
Sbjct: 315 EDAPLAEAFSSKGMKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRI 374

Query: 385 HPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444
           HP  HTP+HSQ+W GIVAG+LAG+FNV  LSHILSVGTLTGYSVV+ACV+ALR  D+  R
Sbjct: 375 HPTLHTPLHSQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDR 434

Query: 445 NDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVS 504
             S+R TS+W++GVICL+IIAC GFGAG+FYR +AS I ++++V +AV+ASA+L  R   
Sbjct: 435 ESSNRWTSSWQEGVICLVIIACSGFGAGVFYRFSASVIFILLSVGVAVVASAVLHYRQAY 494

Query: 505 YKPL 508
             PL
Sbjct: 495 ALPL 498
Permease involved in the transport of the cationic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 Back     alignment and function description
>sp|Q797A7|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis (strain 168) GN=yfnA PE=3 SV=1 Back     alignment and function description
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|Q6DCE8|CTR2_XENLA Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|O07576|YHDG_BACSU Uncharacterized amino acid permease YhdG OS=Bacillus subtilis (strain 168) GN=yhdG PE=2 SV=1 Back     alignment and function description
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
297734594600 unnamed protein product [Vitis vinifera] 0.931 0.793 0.790 0.0
359489192574 PREDICTED: uncharacterized amino acid pe 0.931 0.829 0.790 0.0
147792568 623 hypothetical protein VITISV_020825 [Viti 0.929 0.762 0.753 0.0
255541076568 cationic amino acid transporter, putativ 0.951 0.855 0.777 0.0
356567014560 PREDICTED: uncharacterized amino acid pe 0.911 0.832 0.770 0.0
356531810558 PREDICTED: uncharacterized amino acid pe 0.900 0.824 0.775 0.0
307136427562 cationic amino acid transporter [Cucumis 0.900 0.818 0.752 0.0
18390592569 cationic amino acid transporter 9 [Arabi 0.937 0.841 0.733 0.0
449445511558 PREDICTED: LOW QUALITY PROTEIN: cationic 0.851 0.779 0.767 0.0
449514704566 PREDICTED: LOW QUALITY PROTEIN: cationic 0.851 0.768 0.762 0.0
>gi|297734594|emb|CBI16645.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/481 (79%), Positives = 421/481 (87%), Gaps = 5/481 (1%)

Query: 32  SHFWSSALRAKTLTAPS-----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTV 86
           S F SSALR KTL + S     +RT  G+ L+RRLGLF+L+LIGVGAS+GAGIFVVTGTV
Sbjct: 47  SRFCSSALRTKTLASSSPSDSSIRTLSGDALVRRLGLFDLILIGVGASIGAGIFVVTGTV 106

Query: 87  ARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQL 146
           ARDAGPGVTISF+LAGA+ VLNALCYAELASRFPAVVGGAYLY YTAFNELTAFLVFAQL
Sbjct: 107 ARDAGPGVTISFILAGASCVLNALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFAQL 166

Query: 147 MLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206
           MLDYHIGAASIARSLASYVV++LELFPFFKENIPSWIGHGGEEFLGG LSINILAPILL 
Sbjct: 167 MLDYHIGAASIARSLASYVVAVLELFPFFKENIPSWIGHGGEEFLGGALSINILAPILLV 226

Query: 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT 266
           LLTI+LC GVGESS +N  MTV KV+IV+ VI  GAF+VDVSNWSPFAPNGF+ ILTGAT
Sbjct: 227 LLTIILCRGVGESSAVNCFMTVTKVVIVLFVIIVGAFKVDVSNWSPFAPNGFEAILTGAT 286

Query: 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED 326
           VVFFAYVGFDAVANSAEESK+PQRDLPI I+GSLL+C  LY+GV LV+TGMVPYK L ED
Sbjct: 287 VVFFAYVGFDAVANSAEESKRPQRDLPIAIMGSLLVCVVLYIGVCLVITGMVPYKLLGED 346

Query: 327 APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP 386
           APL++AF S+GLKYVS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS+FA+VHP
Sbjct: 347 APLAEAFTSKGLKYVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSLFARVHP 406

Query: 387 KRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRND 446
           K HTPVHSQ+WVGIVA ILAGLFN+  LSHILSVG+LTGYSVV+ACV+ LRW D+T+   
Sbjct: 407 KAHTPVHSQIWVGIVASILAGLFNIHALSHILSVGSLTGYSVVAACVVTLRWNDKTASQV 466

Query: 447 SSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYK 506
           S+R TS W++GVI LIIIA CGF AGLFYR+ AS+  L+VA VIAVLAS  L  R V   
Sbjct: 467 STRWTSTWQEGVIYLIIIAGCGFSAGLFYRVGASFFCLLVAAVIAVLASIALYSRQVYMN 526

Query: 507 P 507
           P
Sbjct: 527 P 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359489192|ref|XP_002272634.2| PREDICTED: uncharacterized amino acid permease YhdG-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147792568|emb|CAN66397.1| hypothetical protein VITISV_020825 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541076|ref|XP_002511602.1| cationic amino acid transporter, putative [Ricinus communis] gi|223548782|gb|EEF50271.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356567014|ref|XP_003551718.1| PREDICTED: uncharacterized amino acid permease YhdG-like [Glycine max] Back     alignment and taxonomy information
>gi|356531810|ref|XP_003534469.1| PREDICTED: uncharacterized amino acid permease YhdG-like [Glycine max] Back     alignment and taxonomy information
>gi|307136427|gb|ADN34234.1| cationic amino acid transporter [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|18390592|ref|NP_563754.1| cationic amino acid transporter 9 [Arabidopsis thaliana] gi|75308782|sp|Q9C5D6.1|CAAT9_ARATH RecName: Full=Cationic amino acid transporter 9, chloroplastic; Flags: Precursor gi|13430818|gb|AAK26031.1|AF360321_1 unknown protein [Arabidopsis thaliana] gi|21280891|gb|AAM44938.1| unknown protein [Arabidopsis thaliana] gi|332189800|gb|AEE27921.1| cationic amino acid transporter 9 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449445511|ref|XP_004140516.1| PREDICTED: LOW QUALITY PROTEIN: cationic amino acid transporter 9, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449514704|ref|XP_004164456.1| PREDICTED: LOW QUALITY PROTEIN: cationic amino acid transporter 9, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
TAIR|locus:2198861569 CAT9 "cationic amino acid tran 0.937 0.841 0.601 2.3e-149
TIGR_CMR|BA_0818467 BA_0818 "amino acid permease f 0.827 0.905 0.354 1e-59
DICTYBASE|DDB_G0279983 766 ctrB "solute carrier family 7 0.729 0.486 0.358 5.1e-58
DICTYBASE|DDB_G0291201546 ctrC "solute carrier family 7 0.757 0.708 0.333 1.8e-55
UNIPROTKB|F1RSU0429 SLC7A1 "Uncharacterized protei 0.356 0.424 0.357 1.6e-54
UNIPROTKB|F1P388 624 SLC7A1 "Uncharacterized protei 0.365 0.299 0.390 2.5e-54
TAIR|locus:2167462 609 CAT3 "cationic amino acid tran 0.708 0.594 0.338 2.6e-54
UNIPROTKB|F1N5P6 629 SLC7A1 "Uncharacterized protei 0.365 0.297 0.358 9.9e-54
UNIPROTKB|P30825 629 SLC7A1 "High affinity cationic 0.365 0.297 0.358 1.1e-52
UNIPROTKB|E2QU34 629 SLC7A1 "Uncharacterized protei 0.365 0.297 0.347 1.4e-52
TAIR|locus:2198861 CAT9 "cationic amino acid transporter 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 291/484 (60%), Positives = 345/484 (71%)

Query:    29 TCFSHFWSSALRAKTLTAPS----VRTNDXXXXXXXXXXXXXXXIGVGASVGAGIFVVTG 84
             T FSHF +SALR+K+L  PS    VR+                 +GVGAS+GAG+FVVTG
Sbjct:    16 TWFSHFRASALRSKSLPPPSSQTAVRSTSGDSLVRRLGLFDLILLGVGASIGAGVFVVTG 75

Query:    85 TVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144
             TVARDAGPGVTISFLLAGA+ VLNALCYAEL+SRFPAVVGGAY+Y+Y+AFNE+TAFLVF 
Sbjct:    76 TVARDAGPGVTISFLLAGASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFV 135

Query:   145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXX 204
             QLMLDYHIGAASI+RSLASY V++LELFP  K +IP W+G  G+E LGG           
Sbjct:   136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMG-SGKELLGGLLSLNILAPIL 194

Query:   205 XXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDVSNWSPFAPNGFKEILTG 264
                     C GV ESS +NS MT            AGAFE+DV+NWSPFAPNGFK +LTG
Sbjct:   195 LALLTLVLCQGVRESSAVNSVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTG 254

Query:   265 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 324
             ATVVFF+YVGFDAVANSAEESK PQRDLPIGI+GSLL+C +LY+GV LVLTGMVP+  L 
Sbjct:   255 ATVVFFSYVGFDAVANSAEESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLS 314

Query:   325 EDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXXXXXXXXXXXPSIFAKV 384
             EDAPL++AF+S+G+K+VS+LIS               YVQS            PSIF+++
Sbjct:   315 EDAPLAEAFSSKGMKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRI 374

Query:   385 HPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444
             HP  HTP+HSQ+W GIVAG+LAG+FNV  LSHILSVGTLTGYSVV+ACV+ALR  D+  R
Sbjct:   375 HPTLHTPLHSQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDR 434

Query:   445 NDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYXXXXXXXXXXXXXSAMLCLRHVS 504
               S+R TS+W++GVICL+IIAC GFGAG+FYR +AS              SA+L  R   
Sbjct:   435 ESSNRWTSSWQEGVICLVIIACSGFGAGVFYRFSASVIFILLSVGVAVVASAVLHYRQAY 494

Query:   505 YKPL 508
               PL
Sbjct:   495 ALPL 498
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
TIGR_CMR|BA_0818 BA_0818 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291201 ctrC "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSU0 SLC7A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5P6 SLC7A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P30825 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU34 SLC7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5D6CAAT9_ARATHNo assigned EC number0.73340.93730.8418yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 1e-95
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 6e-86
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 1e-54
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 7e-33
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 6e-29
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 3e-27
pfam00324473 pfam00324, AA_permease, Amino acid permease 1e-25
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 5e-23
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 8e-22
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 6e-21
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 8e-19
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 3e-16
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 7e-15
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 1e-13
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 2e-13
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 1e-12
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 2e-12
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 8e-12
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 9e-12
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 1e-11
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 8e-11
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 9e-11
PRK10655438 PRK10655, potE, putrescine transporter; Provisiona 3e-10
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 2e-09
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 8e-09
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 6e-07
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 2e-06
PRK10746461 PRK10746, PRK10746, putative transport protein Yif 4e-06
PRK10580457 PRK10580, proY, putative proline-specific permease 7e-06
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 1e-05
PRK10435435 PRK10435, cadB, lysine/cadaverine antiporter; Prov 8e-05
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 2e-04
pfam04235163 pfam04235, DUF418, Protein of unknown function (DU 0.003
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  300 bits (769), Expect = 1e-95
 Identities = 158/411 (38%), Positives = 249/411 (60%), Gaps = 20/411 (4%)

Query: 39  LRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVAR-DAGPGVTIS 97
           +R K +   S    +   + R L  ++L+ +G+G+++GAGI+V+TG VAR D+GP + +S
Sbjct: 11  IRRKIVDLDS---REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLS 67

Query: 98  FLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASI 157
           FL++G A+VL+  CYAE  +R P   G AYLY+Y    EL AF+    L+L+Y IG A++
Sbjct: 68  FLISGLAAVLSGFCYAEFGARVP-KAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAV 126

Query: 158 ARSLASYVVSILELFPFFKENIPSW-IGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216
           ARS ++Y   +L       + I  +   +    + G     +  A  L+ LL ++L +GV
Sbjct: 127 ARSWSAYFDELL------NKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180

Query: 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP--------FAPNGFKEILTGATVV 268
            ES+ +N   T + +++++ VI AG  + DV+NWS         F P GF  +L+GA   
Sbjct: 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATC 240

Query: 269 FFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAP 328
           FFA++GFDA+A + EE K PQR +PIGI+ SLL+C   Y  +S  LT M+PY  LD DAP
Sbjct: 241 FFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAP 300

Query: 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 388
              AF   G      +++ GA+ G++T+LL G++   R+   + RDGLL    A+++ K 
Sbjct: 301 FPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKT 360

Query: 389 HTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWK 439
            TP+++ V  G +A ++A LF+++ L  +LS+GTL  YS+V+ACV+ LR++
Sbjct: 361 KTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQ 411

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|217981 pfam04235, DUF418, Protein of unknown function (DUF418) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 511
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.96
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.96
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.95
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.93
PHA02764399 hypothetical protein; Provisional 99.86
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.86
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.85
TIGR00814397 stp serine transporter. The HAAAP family includes 99.85
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.85
PRK10483414 tryptophan permease; Provisional 99.83
PRK09664415 tryptophan permease TnaB; Provisional 99.81
PRK15132403 tyrosine transporter TyrP; Provisional 99.8
PRK13629443 threonine/serine transporter TdcC; Provisional 99.76
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.76
PF03845320 Spore_permease: Spore germination protein; InterPr 99.75
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.59
PLN03074473 auxin influx permease; Provisional 99.52
PTZ00206467 amino acid transporter; Provisional 99.46
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.44
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.44
PRK11375484 allantoin permease; Provisional 99.36
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.32
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.27
COG3949349 Uncharacterized membrane protein [Function unknown 99.2
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 99.05
COG1457442 CodB Purine-cytosine permease and related proteins 99.04
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 99.01
PRK11017404 codB cytosine permease; Provisional 98.99
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.84
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.79
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.72
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.66
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.61
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.6
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.59
TIGR00813407 sss transporter, SSS family. have different number 98.58
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.46
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.43
PRK00701439 manganese transport protein MntH; Reviewed 98.41
PLN00151 852 potassium transporter; Provisional 98.41
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.39
PRK15433439 branched-chain amino acid transport system 2 carri 98.3
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.27
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.23
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.21
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.19
PRK10484523 putative transporter; Provisional 98.19
PRK12488549 acetate permease; Provisional 98.17
PLN00150 779 potassium ion transporter family protein; Provisio 98.16
PRK09395551 actP acetate permease; Provisional 98.16
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.13
PRK15419502 proline:sodium symporter PutP; Provisional 98.11
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 98.09
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.99
PLN00149 779 potassium transporter; Provisional 97.96
PRK10745 622 trkD potassium transport protein Kup; Provisional 97.78
KOG4303524 consensus Vesicular inhibitory amino acid transpor 97.73
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.7
PLN00148 785 potassium transporter; Provisional 97.63
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 97.58
KOG2466572 consensus Uridine permease/thiamine transporter/al 97.53
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 96.61
COG4147529 DhlC Predicted symporter [General function predict 96.55
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 96.1
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.85
PRK09928 679 choline transport protein BetT; Provisional 95.83
PRK09950506 putative transporter; Provisional 95.78
COG1292537 BetT Choline-glycine betaine transporter [Cell env 95.28
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 94.58
TIGR00842453 bcct choline/carnitine/betaine transport. properti 93.62
COG4146571 Predicted symporter [General function prediction o 92.83
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 92.3
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 90.67
COG4025284 Predicted membrane protein [Function unknown] 88.53
COG4858226 Uncharacterized membrane-bound protein conserved i 86.01
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 85.91
PF06570206 DUF1129: Protein of unknown function (DUF1129); In 81.45
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=1.3e-54  Score=451.32  Aligned_cols=398  Identities=40%  Similarity=0.719  Sum_probs=344.3

Q ss_pred             HHhhhhhhcccCCCccccCCCCCCcccccChhHHHHHHhcccccchhhhchhhhh-hhcCchHHHHHHHHHHHHHHHHHH
Q 010416           33 HFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALC  111 (511)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~-~~~G~~~~~~~ll~~~~~~~~~~~  111 (511)
                      ++.+++.|+++.++++   +++++++|+++.+|+++++++.++|+|+|..++... ..+||+.+++|+++++.+++.+++
T Consensus         5 ~~~~~~~r~k~~~~~~---~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~   81 (557)
T TIGR00906         5 TFARCLIRRKIVDLDS---REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFC   81 (557)
T ss_pred             HHHHHHhccCCccccc---ccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence            3445566666554321   235579999999999999999999999999999766 568999999999999999999999


Q ss_pred             HHHHhhcCccccCcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccCCCccccCCCccc
Q 010416          112 YAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEF  190 (511)
Q Consensus       112 ~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  190 (511)
                      |+|+++++|+ +||.|.|+++.+|+.+||++||.+++.|....+..+..++.|+.++++. ...+.  .+....  ..+.
T Consensus        82 yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~--~~~~~~--~~~~  156 (557)
T TIGR00906        82 YAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFR--RTYFKL--NYDG  156 (557)
T ss_pred             HHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cccccc--cCCc
Confidence            9999999999 9999999999999999999999999999999999999999999886541 01000  000000  0000


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC--------CCCCCChHHHH
Q 010416          191 LGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------PFAPNGFKEIL  262 (511)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  262 (511)
                      ..  ....+++.+++++.+.+|.+|+|..+++++++..++++.++++++.++.+.+.+||+        ++.|.++.+++
T Consensus       157 l~--~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l  234 (557)
T TIGR00906       157 LA--EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVL  234 (557)
T ss_pred             cc--ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHH
Confidence            00  112456777788889999999999999999999999999988888888777767765        66677888899


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHH
Q 010416          263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS  342 (511)
Q Consensus       263 ~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (511)
                      .+...++|+|.|+|.+++++||+|||+||+||++..++.+++++|++.+++.....|+++.+.++|+.+.++..+.++..
T Consensus       235 ~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~  314 (557)
T TIGR00906       235 SGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAK  314 (557)
T ss_pred             HHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888788999888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010416          343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT  422 (511)
Q Consensus       343 ~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  422 (511)
                      .++.++.+.+.+++.++.+++.+|++++|||||.+|++|+|+|+|+++|++++++..+++.++.++.+++.+.++.+++.
T Consensus       315 ~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~  394 (557)
T TIGR00906       315 YIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGT  394 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999998899999999999999988888889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q 010416          423 LTGYSVVSACVIALRWKD  440 (511)
Q Consensus       423 ~~~~~~~~~~~l~~r~~~  440 (511)
                      ++.|.+.+++.+++|+++
T Consensus       395 ll~y~lv~~~~l~lR~~~  412 (557)
T TIGR00906       395 LLAYSLVAACVLILRYQP  412 (557)
T ss_pred             HHHHHHHHHHHHHhhccc
Confidence            999999999999999664

>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG4025 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 2e-07
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 2e-07
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 2e-06
3lrb_A445 Structure Of E. Coli Adic Length = 445 5e-06
3ob6_A445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 5e-06
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 6e-06
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 69  IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGG-AY 127
           + VG  +GA IF + G  A+ AG  +  +F+L+G  ++L A  Y +L ++  +  G  A+
Sbjct: 16  MAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAF 75
Query: 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIG-- 184
           ++     N +T  L    L + Y I  A  A+  A Y + ++   P    NI  + IG  
Sbjct: 76  IHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLINA-PINTFNIAITEIGIV 133
Query: 185 --HGGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGA 242
                  F G                       VG +      +            FAG 
Sbjct: 134 AFFTALNFFGSK--------------------AVGRAEFF---IVLVALLILGLFIFAGL 170
Query: 243 FEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 301
             +  S   P  AP+    ++  + + F +Y+GF  + N++E  + P++++P  I  S+L
Sbjct: 171 ITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISIL 230
Query: 302 ICAALYVGVSLVLTGMVPYKFLDEDAPLSD 331
           I   +YVGV++   G +P   +DE    S+
Sbjct: 231 IVMFVYVGVAISAIGNLP---IDELIKASE 257
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-124
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 5e-82
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 3e-71
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  370 bits (951), Expect = e-124
 Identities = 94/456 (20%), Positives = 184/456 (40%), Gaps = 36/456 (7%)

Query: 55  EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE 114
           E   ++L L+E V + VG  +GA IF + G  A+ AG  +  +F+L+G  ++L A  Y +
Sbjct: 2   ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTK 61

Query: 115 LASRFPAVVGGAYLYAYTAFNE-LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173
           L ++      G   + + A  + +    +   L + Y I  A  A+  A Y + ++    
Sbjct: 62  LGAKIV-SNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP- 119

Query: 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 233
                               T +I I    ++A  T +  +G          + +VK++I
Sbjct: 120 ------------------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLI 161

Query: 234 VIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDL 292
           + + IFAG   +  S   P  AP+    ++  + + F +Y+GF  + N++E  + P++++
Sbjct: 162 LGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNV 221

Query: 293 PIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAV 350
           P  I  S+LI   +YVGV++   G +P   L    +  L+ A          +LIS GA+
Sbjct: 222 PRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGAL 281

Query: 351 AGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN 410
             +++ +   +Y  + +   L +DG LP  F +                 +  + A LFN
Sbjct: 282 FSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWF--KSTEGLYITSALGVLFALLFN 339

Query: 411 VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFG 470
           +  ++ I S   +  Y  V      L  +    +              I ++ +      
Sbjct: 340 MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIV-------IFSFIVVLGVFLLLL- 391

Query: 471 AGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYK 506
              +  I   ++   +      +    +  R V+ +
Sbjct: 392 --YYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKR 425
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.27
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.46
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.41
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 98.25
4ain_A539 Glycine betaine transporter BETP; membrane protein 90.72
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=2.2e-50  Score=414.03  Aligned_cols=419  Identities=21%  Similarity=0.337  Sum_probs=339.2

Q ss_pred             CCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHh
Q 010416           55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF  134 (511)
Q Consensus        55 ~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~  134 (511)
                      ++.||++++++..++.++.++|+|+|..|+.. ..+|+.++++|++++++.++.+++++|+++++|+ +||.|+|+++.+
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence            45689999999999999999999999998874 4578889999999999999999999999999999 999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416          135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW  214 (511)
Q Consensus       135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  214 (511)
                      ||.+|++.||.+++++....+.+....++++..   ++|...   ++             ....++++++++++..+|++
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~-------------~~~~~~~~~~~~~~~~in~~  142 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY---FFPILK---DP-------------WVLTITCVVVLWIFVLLNIV  142 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---TCGGGG---SH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCcccc---cc-------------HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999888888888887765   333211   11             12367888899999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC-CCCCCC---hHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 010416          215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQR  290 (511)
Q Consensus       215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k  290 (511)
                      |.|...+++.+...++++.++++++.++.+.+.+++. ++.+.+   +.+++.++....|+|.|+|.+++++||+|||+|
T Consensus       143 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r  222 (445)
T 3l1l_A          143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR  222 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence            9999999999999999999988888877766555543 333333   457888999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416          291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL  369 (511)
Q Consensus       291 ~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~  369 (511)
                      ++||++..+..++.++|++..++.....|.++.. .+.|+.++++...+++...++.+..+++.+++.++.+++++|+++
T Consensus       223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~  302 (445)
T 3l1l_A          223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK  302 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888764 467899999988888888899999999999999999999999999


Q ss_pred             HHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010416          370 GLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRT  442 (511)
Q Consensus       370 ~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~  442 (511)
                      +|+|||.+|++|+|+||+ ++|+++++++.+++.++.+..       .++.+.++.++..++.|.+.+++.+++|+|+| 
T Consensus       303 ~~a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-  380 (445)
T 3l1l_A          303 AAADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-  380 (445)
T ss_dssp             HHHHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-
T ss_pred             HHHhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-
Confidence            999999999999999985 999999999999887766542       46889999999999999999999999998776 


Q ss_pred             CCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchHHHH-HHHHHHHHHHHHhhhcccccCCc
Q 010416          443 SRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILL-IVAVVIAVLASAMLCLRHVSYKP  507 (511)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  507 (511)
                      ++|.       +....++.++.+.+.+....    .++.... .....+++...|.+.+|++++++
T Consensus       381 ~~r~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~  435 (445)
T 3l1l_A          381 GKAR-------PAYLAVTTIAFLYCIWAVVG----SGAKEVMWSFVTLMVITAMYALNYNRLHKNP  435 (445)
T ss_dssp             GGGC-------TTTHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred             cccc-------chhHHHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            3221       23345556666555555432    2233323 33333444445555544444433
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.57
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.57  E-value=0.043  Score=53.61  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhh-hhhhhhhhhhhhcCCCCCchHHHHHHHHHH
Q 010416          260 EILTGATVVFFAYV-GFDAVANSAEESKKPQRDLPIGILGSLLIC  303 (511)
Q Consensus       260 ~~~~~~~~~~~~~~-G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~  303 (511)
                      -+..+...++|++. |+-....++.-.|+ +.|+.|-........
T Consensus       239 vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v~~~~  282 (509)
T d2a65a1         239 VWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLN  282 (509)
T ss_dssp             HHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEEEecc
Confidence            46778888888885 77777777776665 456666554444433