Citrus Sinensis ID: 010424

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-

MNTSSCIGISTMKPCCRILIGYRISSIFGVSHIRSNHKIVNNSSKLHSKSKLSCYNDAKCKVIGHKKGVIDLNRRAFFASGSNWGESKILGKNKLGVNKDSSRGILVIPHVASDFRNHSTSIDSHVNEKGFESIYIQGGLNVKPLVIENGNEVVKEDGSRVQVNGSGVNLDILKDLNENVETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSSPWPASRWAGQS

cccccEEEEccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccEEccccccccccccccEEEccccccccEEEEccccccccEEEEccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccccHHHcHHHHHHHHHcccHHHHHHHHHHHHHcccccEEccccccccccccccEEEEEEccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccEEEccccccEEcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHcccccccccccHHHHccccccccEEEccccccccEEEEEEcccccccccccccccccccc

ccccEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEcccccccccEEEEcccccccccccccEEEEEcccHHHccccccEEEEEccccccEEEEEccccccEEEEEEcccEEEcccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHEEEccccEEEEEEccccccccccccHEEHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccccEEEcccccHHHEEEcccccHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHccccccccEEEccccccEEccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHccccHHcccccEcccccccccccHHHHHHccccccEEEEccccccccEEEEEccccccccccccccHccccc

mntsscigistmkpcCRILIGYRISSIFGVshirsnhkivnnssklhsksklscyndakckvighkkgviDLNRRAffasgsnwgeskilgknklgvnkdssrgilviphvasdfrnhstsidshvnekgFESIYiqgglnvkplviengnevvkedgsrvqvngsgvnLDILKDLnenveteseaSNIEKEAWKLLRDAVVNYcgnpvgtvaannpadkqplnydqvfIRDFVPSALAFLLNGEGDIVKNFLLHTLQlqswektvdcyspgqglmpasfkvrtvpldggdgtleevldpdfgesaigrvapvdsgLWWIILLRAYGKitgdyalqerVDVQTGIRLILNLCltdgfdmfpsllvtdgscmidrrmgihghpLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAInkfniypdqipswlvdwipneggylignlepvhghitmvdlgqhsygsspwpasrwagqs

mntsscigistMKPCCRILIGYRISSIFGVSHIRSNHKivnnssklhsksKLSCYNDAKCKVIGHKKGVIDLNRRAFFasgsnwgeskilgknklgvnkdsSRGILVIPHVASDFRNHSTSIDSHVNEKGFESIYIQGGLNVKPLVIENGNEvvkedgsrvqvngsgvnldILKDLNENVETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEevldpdfgesaigrvapvdsglWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSygsspwpasrwagqs

MNTSSCIGISTMKPCCRILIGYRISSIFGVSHIRSNHKIVNNssklhsksklsCYNDAKCKVIGHKKGVIDLNRRAFFASGSNWGESKILGKNKLGVNKDSSRGILVIPHVASDFRNHSTSIDSHVNEKGFESIYIQGGLNVKPLVIENGNEVVKEDGSRVQVNGSGVNLDILKDLNENVETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSSPWPASRWAGQS

*****CIGISTMKPCCRILIGYRISSIFGVSHIRSNHKIVNN***L**KSKLSCYNDAKCKVIGHKKGVIDLNRRAFFASGSNWGESKILGKNKLGVNKDSSRGILVIPHVASDFRNHSTSIDSHVNEKGFESIYIQGGLNVKPLVIENGNEVVKEDGSRVQVNGSGVNLDILKDL************IEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHS***************

****SC*GISTMKPCCRILIGYRISSIFGVSHI***************KSKLSCYNDAKCKVIGHKKGVIDLNRRAFFA*******************************VASDFRNHSTSID*********************************************************************AWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSS******W****

MNTSSCIGISTMKPCCRILIGYRISSIFGVSHIRSNHKIVNNSSKLHSKSKLSCYNDAKCKVIGHKKGVIDLNRRAFFASGSNWGESKILGKNKLGVNKDSSRGILVIPHVASDFRNHSTSIDSHVNEKGFESIYIQGGLNVKPLVIENGNEVVKEDGSRVQVNGSGVNLDILKDLNEN*********IEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHS***************

**TSSCIGISTMKPCCRILIGYRISSIFGVSHIRSNHKIVNNSSKLHSKSKLSCYNDAKCKVIGHKKGVIDLNRRAFFASGSNWGESKILGKNKLGVNKDSSRGILVIPHVASDFRNHSTSIDSHVNEKGFESIYIQGGLNVKPLVIENGNEVVKEDGSRVQVNGS********************SNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSY*S************

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		511
255556486		686	beta-fructofuranosidase, putative [Ricin	0.962	0.717	0.762	0.0
347949208		685	neutral/alkaline invertase [Manihot escu	0.960	0.716	0.752	0.0
147773544		673	hypothetical protein VITISV_029106 [Viti	0.956	0.726	0.746	0.0
153850908		673	neutral invertase [Vitis vinifera]	0.956	0.726	0.744	0.0
225432057		673	PREDICTED: uncharacterized protein LOC10	0.951	0.722	0.742	0.0
163913882		676	putative neutral invertase [Vitis vinife	0.956	0.723	0.745	0.0
163913880		676	putative neutral invertase [Vitis vinife	0.951	0.718	0.740	0.0
356565169		680	PREDICTED: uncharacterized protein LOC10	0.962	0.723	0.719	0.0
356521727		679	PREDICTED: uncharacterized protein LOC10	0.958	0.721	0.72	0.0
4200165		675	neutral invertase [Daucus carota]	0.949	0.718	0.701	0.0

>gi\|255556486\|ref\|XP_002519277.1\| beta-fructofuranosidase, putative [Ricinus communis] gi\|223541592\|gb\|EEF43141.1\| beta-fructofuranosidase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/505 (76%), Positives = 430/505 (85%), Gaps = 13/505 (2%)

Query: 1   MNTSSCIGISTMKPCCRILIGYRISSIFGVSHIR-SNHKIVNNSSKLHSKS----KLSCY 55
           M+TSSCIGIST+KPCCRILIGY+ SS+FG S  + SN  I NN SK  SKS    +  CY
Sbjct: 1   MSTSSCIGISTVKPCCRILIGYKNSSLFGFSPPKLSNQVINNNLSKSQSKSPHHRRFHCY 60

Query: 56  N-DAKCKVIGHKKGVIDLNRRAFFASGSNWGESKILGKNKLGVNKDSSRGILVIPHVASD 114
           + + + ++IG+ K +++ NRR F  S S W +SK+L  + L VN  + RG+LVIP V+SD
Sbjct: 61  SVNNRSRIIGNNKCIVNPNRRTFNISDSCWSQSKVL-TSSLHVNIGTLRGLLVIPKVSSD 119

Query: 115 FRNHSTSIDSHVNEKGFESIYIQGGLNVKPLVIE---NGNEVVKEDG--SRVQVNGSGVN 169
            RNHSTS++SH+NEKGFE+IYIQGGLNVKPLVIE    GN VVKE+   S+V++NG+ VN
Sbjct: 120 IRNHSTSVESHINEKGFENIYIQGGLNVKPLVIEKIETGNNVVKEEDQCSKVEINGTHVN 179

Query: 170 LDILKDLNENV-ETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQV 228
           LD  K LNE   + E E S IEKEAWKLL  A+VNYCGNPVGTVAAN+PADKQPLNYDQV
Sbjct: 180 LDYFKGLNEIAPKVERERSEIEKEAWKLLEGAIVNYCGNPVGTVAANDPADKQPLNYDQV 239

Query: 229 FIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLD 288
           FIRDFVPSALAFLLNGE DIVKNFLL+TLQLQSWEKTVDCYSPGQGLMPASFKVR VPLD
Sbjct: 240 FIRDFVPSALAFLLNGEADIVKNFLLYTLQLQSWEKTVDCYSPGQGLMPASFKVRGVPLD 299

Query: 289 GGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLI 348
           G DG  EEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDY LQER+DVQTGIRLI
Sbjct: 300 GSDGAFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYTLQERIDVQTGIRLI 359

Query: 349 LNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKN 408
           LNLCL+DGFDMFP+LLVTDGSCMIDRRMGIHGHPLEIQ+LFYSALRC+REMLIVNDGTKN
Sbjct: 360 LNLCLSDGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREMLIVNDGTKN 419

Query: 409 LVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDW 468
           LVAAIN+RLSALSFH+REYYWVDM KINEIYRYKTEEYS++A+NKFNIYPDQIPSWLVDW
Sbjct: 420 LVAAINSRLSALSFHIREYYWVDMMKINEIYRYKTEEYSSNAVNKFNIYPDQIPSWLVDW 479

Query: 469 IPNEGGYLIGNLEPVHGHITMVDLG 493
           IP EGGYLIGNL+P H       LG
Sbjct: 480 IPEEGGYLIGNLQPAHMDFRFFTLG 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|347949208\|gb\|AEP31948.1\| neutral/alkaline invertase [Manihot esculenta]	Back alignment and taxonomy information

>gi\|147773544\|emb\|CAN63178.1\| hypothetical protein VITISV_029106 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|153850908\|gb\|ABS52644.1\| neutral invertase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225432057\|ref\|XP_002280462.1\| PREDICTED: uncharacterized protein LOC100233037 [Vitis vinifera] gi\|296083207\|emb\|CBI22843.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|163913882\|emb\|CAP59644.1\| putative neutral invertase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|163913880\|emb\|CAP59643.1\| putative neutral invertase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356565169\|ref\|XP_003550817.1\| PREDICTED: uncharacterized protein LOC100783794 [Glycine max]	Back alignment and taxonomy information

>gi\|356521727\|ref\|XP_003529503.1\| PREDICTED: uncharacterized protein LOC100791877 [Glycine max]	Back alignment and taxonomy information

>gi\|4200165\|emb\|CAA76145.1\| neutral invertase [Daucus carota]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		511
TAIR\|locus:2084329		664	A/N-InvC "alkaline/neutral inv	0.925	0.712	0.654	8.5e-168
TAIR\|locus:2027600		616	A/N-InvA "alkaline/neutral inv	0.749	0.621	0.696	4.6e-144
TAIR\|locus:2074434		659	INVH "invertase H" [Arabidopsi	0.733	0.569	0.670	2.4e-138
TAIR\|locus:2171112		617	INV-E "alkaline/neutral invert	0.618	0.512	0.744	1.5e-131
TAIR\|locus:2133737		558	CINV2 "cytosolic invertase 2"	0.606	0.555	0.561	2.7e-93
TAIR\|locus:2116870		571	A/N-InvB "alkaline/neutral inv	0.577	0.516	0.587	3.4e-93
TAIR\|locus:2014676		551	CINV1 "cytosolic invertase 1"	0.581	0.539	0.569	8.3e-90
TAIR\|locus:2199690		534	A/N-InvD "alkaline/neutral inv	0.581	0.556	0.572	1.4e-89
TAIR\|locus:2016064		499	A/N-InvF "alkaline/neutral inv	0.581	0.595	0.562	1.2e-88

TAIR\|locus:2084329 A/N-InvC "alkaline/neutral invertase C" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1632 (579.6 bits), Expect = 8.5e-168, P = 8.5e-168
 Identities = 329/503 (65%), Positives = 388/503 (77%)

Query:     1 MNTSSCIGISTMKPCCRILIGYRISSIFGVSHIRSNHKIVNNXXXXXXXXXXXCYNDAKC 60
             MN+ SCI +S MKPCCR LI +R SS+FG S   S  K +N+              D++ 
Sbjct:     1 MNSRSCICVSAMKPCCRFLISFRSSSLFGFSPPNSG-KFINSSKLHCTKI------DSRS 53

Query:    61 KVIG-HKKGVIDLNRRAFFASGS-NWGE--SKILGKNKLGVNKDSSRGILVIPHVASDFR 116
                G H + ++ L+R AF  S S +WG   S++L     G ++   RG+LVIPHVASDFR
Sbjct:    54 IRSGIHCRRIV-LDRNAFCDSDSISWGGGGSRVLRAR--GSSRGRGRGVLVIPHVASDFR 110

Query:   117 NHSTS-IDSHVNEKGFESIYIQGGLNVKPLVIENGNEVVKEDG--SRVQVN-GSGVNLDI 172
             N+STS +DSHVN+K FES++      VKPLV +   EV K +G   R + N G G + + 
Sbjct:   111 NYSTSSLDSHVNDKSFESMF------VKPLVFK---EVEKTEGIPKRERGNVGGGKDANF 161

Query:   173 LKDLNENVETES--EASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFI 230
               ++    ETE     + +EKEAWKLLR AVVNYCG PVGTVAAN+P D Q LNYDQVFI
Sbjct:   162 -GNVGVRKETERCLSQTEVEKEAWKLLRGAVVNYCGFPVGTVAANDPGDTQTLNYDQVFI 220

Query:   231 RDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGG 290
             RDFVPSA AF+L+GEG+IV+NFLLHTLQLQSWEKTVDC+SPG GLMPASFKV++ PL+G 
Sbjct:   221 RDFVPSAYAFMLDGEGEIVRNFLLHTLQLQSWEKTVDCHSPGPGLMPASFKVKSAPLEGN 280

Query:   291 DGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILN 350
             DG+ EE LDPDFG SAIGRV+PVDSGLWWIILLRAYGK+TGDY LQER+DVQTGI+LIL 
Sbjct:   281 DGSFEEFLDPDFGGSAIGRVSPVDSGLWWIILLRAYGKLTGDYTLQERIDVQTGIKLILK 340

Query:   351 LCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLV 410
             LCL DGFDMFP+LLVTDGSCM+DRRMGIHGHPLEIQ+LFYSALRC+REMLIVNDGTK+LV
Sbjct:   341 LCLADGFDMFPTLLVTDGSCMVDRRMGIHGHPLEIQALFYSALRCAREMLIVNDGTKSLV 400

Query:   411 AAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIP 470
              A+NNRLSALSFH+REYYWVD+KKINEIYRY TEEYSADA NKFNIYP+QIP+WLVDWIP
Sbjct:   401 TAVNNRLSALSFHIREYYWVDIKKINEIYRYNTEEYSADATNKFNIYPEQIPTWLVDWIP 460

Query:   471 NEGGYLIGNLEPVHGHITMVDLG 493
             ++GGY IGNL+P H       LG
Sbjct:   461 DKGGYFIGNLQPAHMDFRFFTLG 483

GO:0003824 "catalytic activity" evidence=IEA

GO:0004564 "beta-fructofuranosidase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR\|locus:2027600 A/N-InvA "alkaline/neutral invertase A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074434 INVH "invertase H" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2171112 INV-E "alkaline/neutral invertase E" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2133737 CINV2 "cytosolic invertase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2116870 A/N-InvB "alkaline/neutral invertase B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014676 CINV1 "cytosolic invertase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2199690 A/N-InvD "alkaline/neutral invertase D" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2016064 A/N-InvF "alkaline/neutral invertase F" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		511
PLN02703		618	PLN02703, PLN02703, beta-fructofuranosidase	0.0
pfam12899		437	pfam12899, Glyco_hydro_100, Alkaline and neutral i	0.0
PLN03005		550	PLN03005, PLN03005, beta-fructofuranosidase	1e-128
PLN02973		571	PLN02973, PLN02973, beta-fructofuranosidase	1e-125

>gnl\|CDD\|178306 PLN02703, PLN02703, beta-fructofuranosidase	Back alignment and domain information

 Score =  555 bits (1431), Expect = 0.0
 Identities = 236/318 (74%), Positives = 273/318 (85%), Gaps = 1/318 (0%)

Query: 176 LNENVETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVP 235
            N N ++    S IE EAW LLR +VV YCG+P+GT+AAN+P+    LNYDQVFIRDF+P
Sbjct: 120 SNGNAQSVGTKS-IEDEAWDLLRQSVVFYCGSPIGTIAANDPSSTSVLNYDQVFIRDFIP 178

Query: 236 SALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLE 295
           S +AFLL GE DIV+NF+L+TLQLQSWEKT+DC+SPGQGLMP SFKV+TVPLDG D   E
Sbjct: 179 SGIAFLLKGEYDIVRNFILYTLQLQSWEKTMDCHSPGQGLMPCSFKVKTVPLDGDDSMTE 238

Query: 296 EVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTD 355
           EVLDPDFGE+AIGRVAPVDSGLWWIILLRAYGK TGD ++QERVDVQTGI++IL LCL D
Sbjct: 239 EVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCTGDLSVQERVDVQTGIKMILKLCLAD 298

Query: 356 GFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINN 415
           GFDMFP+LLVTDGSCMIDRRMGIHGHPLEIQ+LFYSAL C+REML   DG+ +L+ A+NN
Sbjct: 299 GFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALVCAREMLTPEDGSVDLIRALNN 358

Query: 416 RLSALSFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGY 475
           RL AL+FH+REYYW+D+KKINEIYRY+TEEYS DA+NKFNIYPDQIPSWLVD++PN GGY
Sbjct: 359 RLVALNFHIREYYWLDLKKINEIYRYQTEEYSYDAVNKFNIYPDQIPSWLVDFMPNRGGY 418

Query: 476 LIGNLEPVHGHITMVDLG 493
           LIGNL+P H       LG
Sbjct: 419 LIGNLQPAHMDFRFFTLG 436

Length = 618

>gnl\|CDD\|221840 pfam12899, Glyco_hydro_100, Alkaline and neutral invertase	Back alignment and domain information

>gnl\|CDD\|178582 PLN03005, PLN03005, beta-fructofuranosidase	Back alignment and domain information

>gnl\|CDD\|178556 PLN02973, PLN02973, beta-fructofuranosidase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		511
PF12899		436	Glyco_hydro_100: Alkaline and neutral invertase; I	100.0
PLN03005		550	beta-fructofuranosidase	100.0
PLN02973		571	beta-fructofuranosidase	100.0
PLN02703		618	beta-fructofuranosidase	100.0
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	99.49
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	99.4
COG3408		641	GDB1 Glycogen debranching enzyme [Carbohydrate tra	99.18
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	99.04
TIGR01531		1464	glyc_debranch glycogen debranching enzymye. glycog	98.74
PF04685		365	DUF608: Protein of unknown function, DUF608; Inter	97.92
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	97.73
TIGR01535		648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	96.9
PF00723		448	Glyco_hydro_15: Glycosyl hydrolases family 15; Int	96.51
COG3387		612	SGA1 Glucoamylase and related glycosyl hydrolases	94.88
PRK10137		786	alpha-glucosidase; Provisional	93.86
PF06824		424	DUF1237: Protein of unknown function (DUF1237); In	93.44

>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases	Back alignment and domain information

Probab=100.00  E-value=9.8e-151  Score=1144.71  Aligned_cols=303  Identities=66%  Similarity=1.180  Sum_probs=296.7

Q ss_pred             HHHHHHHHhhhhcCCcccEEEeecCCCCCCCCCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhccccceeccccCC
Q 010424          192 EAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSP  271 (511)
Q Consensus       192 eAwelL~~SlV~y~g~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~  271 (511)
                      ||||+||+|+|+|+|+|||||||.||+.+++|||||||+||||||||+|||+||+|||||||++||+||||||++|||++
T Consensus         1 ~a~~~l~~s~v~~~g~pvGtvAa~d~~~~~~lNY~qvF~RDfvps~l~fL~~g~~eIVrnFL~~tl~Lq~~~~~~d~~~~   80 (436)
T PF12899_consen    1 EAWELLERSIVYYQGQPVGTVAALDPSAEEALNYDQVFVRDFVPSALAFLMKGEPEIVRNFLLETLQLQSWEKQVDCFKP   80 (436)
T ss_pred             ChHHHHhhheEeeCCceeeeeeecCCcccccccccceEeecChHHHHHHHHcCCHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            69999999999999999999999999877899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccccccccchhHHHHHHHHHHh
Q 010424          272 GQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNL  351 (511)
Q Consensus       272 g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~vQrGIrlIL~L  351 (511)
                      |+|+|||||||++++       ++|+|+|||||+|||||||||||||||||||||+|+|||++|+++||||+||||||+|
T Consensus        81 g~G~mPaSFkv~~~~-------~~e~l~aDfGe~AIgRv~pVDs~~WWiillraY~k~tgD~s~~~~~~~Q~gi~liL~l  153 (436)
T PF12899_consen   81 GRGVMPASFKVLHEN-------EEETLIADFGERAIGRVAPVDSGLWWIILLRAYVKATGDYSLAESPEVQRGIRLILDL  153 (436)
T ss_pred             CCCcccceEEEecCC-------CCceEecCcchhhhccccCcccccHHHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHH
Confidence            999999999998644       4789999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhccccc
Q 010424          352 CLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVD  431 (511)
Q Consensus       352 cL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWlD  431 (511)
                      ||+++||||||||||||||||||||||||||||||||||+|||||++||++++++++++++|++||++|++|||+|||||
T Consensus       154 cL~~~Fd~~PtLlvpDg~~MiDRrMgv~G~PlEiQ~Lf~~aLr~a~~ll~~~~~~~~~~~~i~~rl~~L~~h~r~~yWld  233 (436)
T PF12899_consen  154 CLADGFDMFPTLLVPDGACMIDRRMGVYGHPLEIQALFYMALRCARELLKPDEEGKDLIERIDKRLHALSFHIREYYWLD  233 (436)
T ss_pred             HcccccCCCceEEecCCceeecccccccCCcchHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             ccchhhhhccCccccchhhhcccccCCCCCcchhhcccCCCCceeeeeecCCccceeeeeeccccccCCC
Q 010424          432 MKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSSP  501 (511)
Q Consensus       432 ~~~ln~IyRykTEEYs~~a~NkFNI~PdsIP~Wl~dwlp~~GGYliGNl~P~rmDFRfFsLGNll~~~~~  501 (511)
                      +++||+|||||||||||+|+|||||||||||+||+||||++||||+|||+|+|||||||+|||+||-.|.
T Consensus       234 ~~~ln~iyr~~teey~~~a~N~fNi~p~~ip~wl~dwlp~~gGY~ignv~P~~~dfRff~lGNlLAiLsg  303 (436)
T PF12899_consen  234 LKRLNEIYRYKTEEYGHTAVNKFNIYPDSIPDWLFDWLPEKGGYFIGNVSPARMDFRFFSLGNLLAILSG  303 (436)
T ss_pred             HHHHHHHHhccHhhhhhhhhhcccCCcccchHHHHHhcccCCceeEeeccccccceeehhhhhHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999997664

This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity

>PLN03005 beta-fructofuranosidase	Back alignment and domain information

>PLN02973 beta-fructofuranosidase	Back alignment and domain information

>PLN02703 beta-fructofuranosidase	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>TIGR01531 glyc_debranch glycogen debranching enzymye	Back alignment and domain information

>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase	Back alignment and domain information

>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10137 alpha-glucosidase; Provisional	Back alignment and domain information

>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		511
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 54/407 (13%), Positives = 116/407 (28%), Gaps = 143/407 (35%)

Query: 171 DILKDLNENVETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADK---------- 220
           DIL    +      +  +++     +L    +++       + + +              
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH------IIMSKDAVSGTLRLFWTLLS 73

Query: 221 QPLNYDQVFIRD-------FVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPG- 272
           +     Q F+ +       F+ S +         + + ++    +L +       ++   
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFAKYN 130

Query: 273 --------------QGLMPASFKVRTVPLDG--GDG----TLEEVLDPDFGESAIGRVAP 312
                           L PA      V +DG  G G     L+  L              
Sbjct: 131 VSRLQPYLKLRQALLELRPAKN----VLIDGVLGSGKTWVALDVCLSYKVQCKM------ 180

Query: 313 VDSGLWWI-------------ILLRAYGKITGDYALQERVDVQTGIR------------- 346
            D  ++W+             +L +   +I  ++    R D  + I+             
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRL 237

Query: 347 ----------LIL-NLC---LTDGFDMFPSLLVT--DGS-------------CMIDRRMG 377
                     L+L N+      + F++   +L+T                   +    M 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 378 IHGHPLEIQSLFYSALRCS-----REMLIVNDGTKNLVAAINNRLSALSFHVREYYW--V 430
           +   P E++SL    L C      RE+L  N    +++A     +           W  V
Sbjct: 298 L--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIR--DGLATWDNWKHV 350

Query: 431 DMKKINEIYRY-----KTEEYSADAINKFNIYPD--QIPS------W 464
           +  K+  I        +  EY     ++ +++P    IP+      W
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIW 396

PyMOL of 1vt4

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Length = 807	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		511
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	99.38
3rrs_A		822	Cellobiose phosphorylase; GH94, alpha barrel, disa	98.99
3qde_A		811	Cellobiose phosphorylase; cellulase, phosphate, tr	98.97
2okx_A		956	Rhamnosidase B; alpha barrel, glycoside hydrolase	98.44
1ulv_A		1020	Glucodextranase; GH family 15, (alpha-alpha)6-barr	98.29
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	98.26
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	98.22
1lf6_A		684	Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica	97.94
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	97.92
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	97.17
3qry_B		426	Putative uncharacterized protein; alpha-alpha six	96.66
3p2c_A		463	Putative glycosyl hydrolase; structural genomics,	96.28
3qt9_A		427	Putative uncharacterized protein CPE0426; alpha-al	95.97
2p0v_A		489	Hypothetical protein BT3781; alpha-beta protein, s	95.87
2fba_A		492	Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy	95.57
2vn4_A		599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.14
1gai_A		472	Glucoamylase-471; hydrolase, glycosidase, polysacc	94.54

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*	Back alignment and structure

Probab=99.38  E-value=9.4e-13  Score=138.50  Aligned_cols=186  Identities=14%  Similarity=0.119  Sum_probs=122.4

Q ss_pred             eee-ccChHHHHHHHhcCChHHHHHHHHHHhhccccceeccccCCCCC-cccccEEEeeecCCCCCCC-ceeeeccCcCC
Q 010424          228 VFI-RDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQG-LMPASFKVRTVPLDGGDGT-LEEVLDPDFGE  304 (511)
Q Consensus       228 VFi-RDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~G-vmPASFKV~~~p~~~~~~~-~eE~L~ADFGe  304 (511)
                      -|. ||....+++++ .|++|++|++|..+...|..          .| ++|..|...++|..+.... ...+++.+.|+
T Consensus       345 ~~G~RD~~~~~~~l~-~~~p~~ar~~l~~~~~~Q~~----------~G~~~p~~~p~~~~~~~g~~~~~~~~~~~g~~~~  413 (807)
T 1v7w_A          345 GLGYRDTAQDAISVP-HANPEMTRKRIVDLLRGQVK----------AGYGLHLFDPDWFDPEKEDVAPSKSPTVVPTPSD  413 (807)
T ss_dssp             SEEHHHHHHHTTSCT-TTCHHHHHHHHHHHHHTBCT----------TSCBCSEECGGGGCC-------------------
T ss_pred             ccCchHHhHHHHHHh-hcCHHHHHHHHHHHHhcccc----------CCCcceeeeeccccccccccCCccccccccCCCc
Confidence            466 99999999976 99999999999998876643          33 4555441111110000000 00122333444


Q ss_pred             cc--cc-cccccCCccHHHHHHHHHhhcccccccccc--h-----------hHHHHHHHHHHhhhcCCCCCCceeeecCC
Q 010424          305 SA--IG-RVAPVDSGLWWIILLRAYGKITGDYALQER--V-----------DVQTGIRLILNLCLTDGFDMFPSLLVTDG  368 (511)
Q Consensus       305 ~A--IG-RVapVDSgLWWiILLraY~k~TGD~sl~~~--p-----------~vQrGIrlIL~LcL~~~Fd~fPtLlVpDG  368 (511)
                      .+  +| +..-.|..+||+++++.|.+.|||.++.+.  |           .++++++.+++.+-.   +..|.....|=
T Consensus       414 ~~~~~g~~~~~~D~~lw~~~~~~~y~~~tGD~~~L~e~~p~~~~~~~~v~e~~~~~~~~~~~~~~~---~GL~~~~~~DW  490 (807)
T 1v7w_A          414 EDKIHGIKDTCSDDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQ---TGICKGLRADW  490 (807)
T ss_dssp             ---CCCGGGCBSSGGGGHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHHSBCT---TSCBEEETCSS
T ss_pred             chhhcCCCCCccchhhHHHHHHHHHHHHhCCHHHHhcccccccCCcchHHHHHHHHHHHHHhcCCC---CCCcccCCCCC
Confidence            33  33 223349999999999999999999999873  4           399999988875433   45554433221


Q ss_pred             cccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhccccc
Q 010424          369 SCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVD  431 (511)
Q Consensus       369 s~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWlD  431 (511)
                      ..-.|  +| .|.++++|+++|.||+++.+|.+.-.+ .+..+...++...|+..|+++||-+
T Consensus       491 ~D~~~--~~-~g~~v~~~a~~y~al~~~a~la~~lG~-~~~a~~~~~~A~~lk~~~~~~~w~~  549 (807)
T 1v7w_A          491 NDCLN--LG-GGESSMVSFLHFWALQEFIDLAKFLGK-DQDVNTYTEMAANVREACETHLWDD  549 (807)
T ss_dssp             STTCC--CE-EEEEHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHSEET
T ss_pred             CCcCC--CC-CCeehhHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhccCC
Confidence            11023  35 899999999999999999999987433 5556777888888999999999975

PyMOL of 1v7w

>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*	Back alignment and structure

>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}	Back alignment and structure

>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}	Back alignment and structure

>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*	Back alignment and structure

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}	Back alignment and structure

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*	Back alignment and structure

>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*	Back alignment and structure

>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*	Back alignment and structure

>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A	Back alignment and structure

>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8	Back alignment and structure

>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A	Back alignment and structure

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*	Back alignment and structure

>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		511
d1v7wa1		531	a.102.1.4 (A:271-801) Chitobiose phosphorylase Chb	6e-06

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Length = 531	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Chitobiose phosphorylase ChbP
species: Vibrio proteolyticus [TaxId: 671]

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 29/230 (12%), Positives = 59/230 (25%), Gaps = 14/230 (6%)

Query: 209 VGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDC 268
              V +   +  +      +  RD    A++       ++ +  ++  L+ Q        
Sbjct: 57  TCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH-ANPEMTRKRIVDLLRGQVKAGYGLH 115

Query: 269 YSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGK 328
                   P    V                  D  +    +    D  LW I  +  Y  
Sbjct: 116 LFDPDWFDPEKEDVAP-----SKSPTVVPTPSDEDKIHGIKDTCSDDHLWLIPTICKYVM 170

Query: 329 ITGDYA-LQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMI------DRRMGIHGH 381
            TG+ +   + +    G    +   +    D     +   G C        D      G 
Sbjct: 171 ETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGICKGLRADWNDCLNLGGGE 230

Query: 382 PLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVD 431
              +  L + AL+   ++     G    V       + +      + W D
Sbjct: 231 SSMVSFLHFWALQEFIDLAKFL-GKDQDVNTYTEMAANVREACETHLWDD 279

PyMOL of d1v7wa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		511
d1lf6a1		397	Bacterial glucoamylase, C-terminal domain {Thermoa	99.02
d1v7wa1		531	Chitobiose phosphorylase ChbP {Vibrio proteolyticu	98.92
d1ulva1		413	Glucodextranase, domain A {Arthrobacter globiformi	98.81
d2p0va1		443	Hypothetical protein BT3781 {Bacteroides thetaiota	94.48
d2fbaa1		492	Glucoamylase {Yeast (Saccharomycopsis fibuligera)	92.93
d2jg0a1		511	Periplasmic trehalase TreA {Escherichia coli [TaxI	92.45
d2nvpa1		426	Hypothetical protein CPF0428 {Clostridium perfring	91.23

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Bacterial glucoamylase, C-terminal domain
species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]

Probab=99.02  E-value=6.5e-10  Score=104.35  Aligned_cols=191  Identities=15%  Similarity=0.121  Sum_probs=131.6

Q ss_pred             hHHHHHHHHHHHhhhhcCCc-ccEEEeecCCCC------CCCCCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhcc
Q 010424          188 NIEKEAWKLLRDAVVNYCGN-PVGTVAANNPAD------KQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQ  260 (511)
Q Consensus       188 ~l~~eAwelL~~SlV~y~g~-PVGTvAA~D~~~------~~~LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQ  260 (511)
                      .+.+...-.|+.   ..+.+ +-++|||.+.+-      ...=.|.-||+||.+.++++++..|..|..+.||..+++.|
T Consensus         9 ~~~~~s~~~lk~---~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~a~~~l~~l~~~~   85 (397)
T d1lf6a1           9 SLYYNSMMILKA---SEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDSANRSLDYLAKVV   85 (397)
T ss_dssp             HHHHHHHHHHHT---TBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---ccCCCCCceEEEeCCCCcccccCCCCCCCCeeEcHhhHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            445444444442   11233 467778876432      11236999999999999999999999999999999988766


Q ss_pred             ccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccccccccchh
Q 010424          261 SWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVD  340 (511)
Q Consensus       261 s~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~  340 (511)
                      .-          .|.+|..+-     .++         .+++     +++ ..|+..|++++++.|.+.+..     .+-
T Consensus        86 ~~----------~G~~~~~~~-----~~G---------~~~~-----~~~-q~D~~g~~i~a~~~~~~~~~~-----~~~  130 (397)
T d1lf6a1          86 KD----------NGMIPQNTW-----ISG---------KPYW-----TGI-QLDEQADPIILSYRLKRYDLY-----DSL  130 (397)
T ss_dssp             HH----------HSSCCSCBC-----TTS---------CBCC-----CCC-CHHHHHHHHHHHHHTTCGGGT-----TTT
T ss_pred             cc----------cCCCCCCCC-----cCC---------Cccc-----cCC-CCchHHHHHHHHHHHHhcchh-----HHH
Confidence            42          466676552     111         1222     332 479999999999999876543     466


Q ss_pred             HHHHHHHHHHhhhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHH
Q 010424          341 VQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSAL  420 (511)
Q Consensus       341 vQrGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aL  420 (511)
                      +++.+..|+..--.++|+.               +.-..|+..+.+++.|.||+++.++...-.+ ........++-..+
T Consensus       131 i~~~~~~l~~~~~~~~~~l---------------WEe~~g~~~~t~~~~~~aL~~~a~la~~~g~-~~~a~~~~~~A~~i  194 (397)
T d1lf6a1         131 VKPLADFIIKIGPKTGQER---------------WEEIGGYSPATMAAEVAGLTCAAYIAEQNKD-YESAQKYQEKADNW  194 (397)
T ss_dssp             HHHHHHHHHHHCSSBSSCT---------------TSSCCBBCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcccc---------------ccccCCcccchhHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHH
Confidence            7788887776544444432               4556789999999999999999999876443 34445555555567


Q ss_pred             HHhhhhcccccc
Q 010424          421 SFHVREYYWVDM  432 (511)
Q Consensus       421 s~hir~yYWlD~  432 (511)
                      +..|.+++|.+-
T Consensus       195 ~~~i~~~~~~~~  206 (397)
T d1lf6a1         195 QKLIDNLTYTEN  206 (397)
T ss_dssp             HHHHHHHHEESS
T ss_pred             HHHHHHhccCcc
Confidence            778888888664

PyMOL of d1lf6a1

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}	Back information, alignment and structure

>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}	Back information, alignment and structure

>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]}	Back information, alignment and structure

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]}	Back information, alignment and structure