Citrus Sinensis ID: 010433
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GW61 | 504 | Sugar transport protein 1 | yes | no | 0.980 | 0.994 | 0.768 | 0.0 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.988 | 0.984 | 0.605 | 0.0 | |
| Q10710 | 522 | Sugar carrier protein A O | N/A | no | 0.972 | 0.952 | 0.606 | 1e-171 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.976 | 0.948 | 0.564 | 1e-164 | |
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.947 | 0.949 | 0.542 | 1e-155 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.978 | 0.972 | 0.525 | 1e-154 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.978 | 0.967 | 0.524 | 1e-153 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.974 | 0.952 | 0.541 | 1e-151 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.972 | 0.952 | 0.534 | 1e-149 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.966 | 0.961 | 0.528 | 1e-147 |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/501 (76%), Positives = 441/501 (88%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG TD G LKRAHLYE+RITSYF+ AC+V +MGGSLFGYDLGVSGGVTSMDDFLKEF
Sbjct: 1 MAGGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP +Y+RKQ HL ETDYCKYDNQ+LTLFTSSLYFAGL+STFGASYVTR GRR SI+VGS
Sbjct: 61 FPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFF+G ++NA A +I ML+LGRIFLG+GIGFGNQAVPLYLSEMAPAKIRG VNQLFQLT
Sbjct: 121 VSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TC+GILVANLINY TE+IHPWGWRLSLGLATVPA LMF+GGL LPETPNSLVEQGKL++A
Sbjct: 181 TCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+ VL KVRGT N++AEF DL++AS+AARA+KNPFRNL ++NRPQLVIGA+G+PAFQQLT
Sbjct: 241 KAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPV+FQSLGFG A+L SS IT AL +AA++SM DKFGRR LEA E
Sbjct: 301 GMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
M YMV+V +TLAL+FGEGK LPK +G+ LV++ICLFVLAYGRSWGP+GWLVPSELFPLE
Sbjct: 361 MFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
RSAGQSVVVC NL FTALIAQ FL +LCHLK+GIFL+F GL++ M +F+YF LPETKQV
Sbjct: 421 TRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVKE 501
PIEE+YLL+ HW WK+ V++
Sbjct: 481 PIEEVYLLWRQHWLWKKYVED 501
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/515 (60%), Positives = 396/515 (76%), Gaps = 10/515 (1%)
Query: 1 MAGGGFTDAGDLK-RAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
MAGG F G K RA Y+ ++TSY +IAC+VAA+GGS+FGYD+G+SGGVTSMD+FL+E
Sbjct: 1 MAGGSFGPTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEE 60
Query: 60 FFPKVY-RRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118
FF VY ++KQAH E++YCKYDNQ L FTSSLY AGLVST AS +TR+ GRRASI+
Sbjct: 61 FFHTVYEKKKQAH--ESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVC 118
Query: 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178
G +SF IG+ LNA AV+++MLL GRI LG+GIGFGNQAVPLYLSE+AP +RG +N +FQ
Sbjct: 119 GGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQ 178
Query: 179 LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
L T +GI AN++NYGT+++ PWGWRLSLGLA PA LM +GG FLPETPNSLVE+G +
Sbjct: 179 LATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
R+VL K+RGT NV+AE D++DAS A +IK+PFRN+ +K++RPQLV+ A+ +P FQ
Sbjct: 239 RGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVM-AICMPMFQI 297
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+NSILFYAPV+FQ++GFG A+LYSS +TG L ++ IS+ VD+ GRRA + G
Sbjct: 298 LTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGG 357
Query: 359 TEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP 418
+MII VIVA+ L ++FG+ + L KG + +VI ICLFV+A+G SWGPLGW +PSE+FP
Sbjct: 358 IQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFP 417
Query: 419 LEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 478
LE RSAGQS+ V NLLFT +IAQAFL LC KFGIFL F G V +M+ F+YF LPETK
Sbjct: 418 LETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETK 477
Query: 479 QVPIEEIYLLFENHWFWKRIVK-----EDNGKFVE 508
VPIEE+ LL+ HWFWK+++ ED K V
Sbjct: 478 GVPIEEMTLLWSKHWFWKKVLPDATNLEDESKNVS 512
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q10710|STA_RICCO Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 600 bits (1548), Expect = e-171, Method: Compositional matrix adjust.
Identities = 303/500 (60%), Positives = 377/500 (75%), Gaps = 3/500 (0%)
Query: 1 MAGGGFTDAGDLK-RAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
MAGG AG K RA Y+ ++T +ACMVAA+GGS+FGYD+G+SGGV SMD FL++
Sbjct: 1 MAGGSLAPAGVAKERAEQYQGKVTFAVFVACMVAAVGGSIFGYDIGISGGVISMDAFLEK 60
Query: 60 FFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FF VY +K+ H E +YCKYD+Q L FTSSLY AGL ++ A +TR GRRASI+ G
Sbjct: 61 FFRSVYLKKK-HAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRRASIISG 119
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
+SF IGA LNA A++++MLLLGRI LG+GIGFGNQAVPLYLSEMAP +RG +N +FQL
Sbjct: 120 GISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGLNIMFQL 179
Query: 180 TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239
T GI AN++NYGT K+ WGWRLSLGLA PA LM +GGL LPETPNSL+EQG ++
Sbjct: 180 ATTSGIFTANMVNYGTHKLESWGWRLSLGLAAAPALLMTIGGLLLPETPNSLIEQGLHEK 239
Query: 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299
R VLEK+RGT +VDAEF D++DAS A +IK+PFRN+ +K+NRPQLV+ A+ +P FQ L
Sbjct: 240 GRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVM-AIFMPTFQIL 298
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N ILFYAP +FQS+GFG AALYSS +TG LC + IS+A VD+ GRR + G
Sbjct: 299 TGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFLLISGGI 358
Query: 360 EMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL 419
+MI VIVAI L ++FG+ + L K + +VI+ICLFVLA+G SWGPLGW VPSE+FPL
Sbjct: 359 QMITCQVIVAIILGVKFGDNQQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTVPSEIFPL 418
Query: 420 EMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQ 479
E RSAGQS+ V NL FT +IAQ+F + LC KFGIFL F G V +M+AF+Y FLPETK
Sbjct: 419 ETRSAGQSITVAVNLFFTFVIAQSFPSLLCAFKFGIFLFFAGWVTVMTAFVYIFLPETKG 478
Query: 480 VPIEEIYLLFENHWFWKRIV 499
VPIEE+ L+ HWFWK+IV
Sbjct: 479 VPIEEMIFLWRKHWFWKKIV 498
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Ricinus communis (taxid: 3988) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 578 bits (1489), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/507 (56%), Positives = 374/507 (73%), Gaps = 8/507 (1%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
M GGGF + + +E +IT +I+C++AA GG +FGYD+GVSGGVTSM DFL++F
Sbjct: 1 MTGGGFATSAN---GVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKF 57
Query: 61 FPKVYRRKQAHLT-ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FP VYR+ A +++YCKYDNQ L LFTSSLY AGL +TF ASY TR+ GRR ++++
Sbjct: 58 FPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIA 117
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
V F IG LNA A ++ML+ GRI LG G+GF NQAVPL+LSE+AP +IRG +N LFQL
Sbjct: 118 GVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQL 177
Query: 180 TTCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
+GIL ANL+NYGT KI WGWRLSLGLA +PA L+ VG L + ETPNSLVE+G+LD
Sbjct: 178 NVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLD 237
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
E + VL ++RGT NV+ EF+DL++AS A+ +K+PFRNL +++NRPQLVI A+ + FQQ
Sbjct: 238 EGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI-AVALQIFQQ 296
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
TG+N+I+FYAPV+F +LGFGS A+LYS+V+TG ++ L+S+ VDK GRR LEAG
Sbjct: 297 CTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAG 356
Query: 359 TEMIIYMVIVAITLALEFGE-GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF 417
+M V++AI L ++ + L KG I +V++IC +V A+ SWGPLGWL+PSE F
Sbjct: 357 VQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETF 416
Query: 418 PLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 477
PLE RSAGQSV VC NLLFT +IAQAFL+ LCH KFGIF+ F V+IMS F+ F LPET
Sbjct: 417 PLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPET 476
Query: 478 KQVPIEEIY-LLFENHWFWKRIVKEDN 503
K +PIEE+ +++ HWFW R + + N
Sbjct: 477 KNIPIEEMTERVWKKHWFWARFMDDHN 503
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 547 bits (1409), Expect = e-155, Method: Compositional matrix adjust.
Identities = 264/487 (54%), Positives = 363/487 (74%), Gaps = 3/487 (0%)
Query: 18 YEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDY 77
Y R+TS+ ++CM+AAMGG +FGYD+GVSGGVTSMD FLK+FFP VYR+ + ++Y
Sbjct: 14 YNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNY 73
Query: 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS 137
CK+D+Q+LT FTSSLY AGLV++F AS VTR+ GR+ SI++G F A L AV++
Sbjct: 74 CKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVY 133
Query: 138 MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK 197
ML+ GR+ LG+G+GF NQAVPLYLSEMAP + RGA+N FQ + +G L ANLINYGTEK
Sbjct: 134 MLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEK 193
Query: 198 IHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE-ARKVLEKVRGTANVDA 255
I WGWR+SL +A VPA ++ G LFLPETPNSL+++ E A+ +L++VRGT +V A
Sbjct: 194 IEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQA 253
Query: 256 EFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS 315
E DLI AS +R I++PF+N+ ++K RPQLV+ A+ IP FQQ+TG+N I FYAP++F++
Sbjct: 254 ELDDLIKASIISRTIQHPFKNIMRRKYRPQLVM-AVAIPFFQQVTGINVIAFYAPILFRT 312
Query: 316 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 375
+G A+L SS++TG+ + ISM VDK GRRA F+ G +M + ++V +A E
Sbjct: 313 IGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAE 372
Query: 376 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL 435
G+ + KG ++I+IC++V +G SWGPLGWLVPSE+FPLE+RSAGQS+VV + L
Sbjct: 373 LGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFL 432
Query: 436 FTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFW 495
FT ++AQ FL+ LCH K GIF FGG VV+M+AF++F LPETK+VPIE++ +++ +HWFW
Sbjct: 433 FTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFW 492
Query: 496 KRIVKED 502
K+I+ E+
Sbjct: 493 KKIIGEE 499
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/504 (52%), Positives = 364/504 (72%), Gaps = 4/504 (0%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F YE +T++ ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSE-GGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V + + +T YCK+DNQ+L LFTSSLY A LV++F AS +TR GR+ S+ +G
Sbjct: 60 FPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
++F IGA+ NA AV++SML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 LAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GILVANLINYGT K+ GWR+SLGLA VPA +M +G LP+TPNS++E+GK +EA
Sbjct: 180 ITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+++L+K+RG NVD EF DLIDA AA+ ++NP++N+ + K RP L+ + IP FQQ+T
Sbjct: 240 KQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS-AIPFFQQIT 298
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G+N I+FYAPV+F++LGFG AAL S+VITG+ ++ +S+ VD++GRR FLE G +
Sbjct: 299 GINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQ 358
Query: 361 MIIYMVIVAITLALEFGEG--KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP 418
M I ++V + FG L +++ IC++V + SWGPLGWLVPSE+ P
Sbjct: 359 MFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICP 418
Query: 419 LEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 478
LE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F F +V IM+ FIYF LPETK
Sbjct: 419 LEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETK 478
Query: 479 QVPIEEIYLLFENHWFWKRIVKED 502
VPIEE+ +++ HWFWK+ + ED
Sbjct: 479 GVPIEEMGRVWKQHWFWKKYIPED 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/505 (52%), Positives = 365/505 (72%), Gaps = 5/505 (0%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F + YE +T + ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSE-GGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V ++ ET YCK+DNQ+L LFTSSLY A L S+F AS VTR GR+ S+ VG
Sbjct: 60 FPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
V+F IG++ NA A +++ML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 VAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GIL+ANLINYGT ++ GWR+SLGLA VPA +M +G LP+TPNS++E+GK ++A
Sbjct: 180 ITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGALGIPAFQQL 299
R++L+K+RG NVD EF DL DA AA+ + NP++N+F++ K RP LV + IP FQQ+
Sbjct: 240 REMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS-AIPFFQQI 298
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F++LGF A+L S+VITG ++ L+S+ VD++GRR FLE G
Sbjct: 299 TGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGI 358
Query: 360 EMIIYMVIVAITLALEFGE--GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF 417
+MI+ ++V + ++FG L +++ ICL+V + SWGPLGWLVPSE+
Sbjct: 359 QMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEIC 418
Query: 418 PLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 477
PLE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F FGG+V +M+ FIYF LPET
Sbjct: 419 PLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPET 478
Query: 478 KQVPIEEIYLLFENHWFWKRIVKED 502
K VPIEE+ +++ H FWKR + +D
Sbjct: 479 KGVPIEEMGRVWKQHPFWKRYMPDD 503
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/506 (54%), Positives = 370/506 (73%), Gaps = 8/506 (1%)
Query: 2 AGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFF 61
A GG +G ++ +Y +T Y + C+VAAMGG +FGYD+G+SGGVTSMD FLK+FF
Sbjct: 3 AVGGIPPSGGNRK--VYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 62 PKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSV 121
P VYR+K+A + YC+YD+Q LT+FTSSLY A L+++ AS +TR GR+ S++ G V
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 122 SFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTT 181
F GAI+N A + ML+LGRI LG GIGF NQ+VPLYLSEMAP K RGA+N FQL+
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 182 CLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GILVAN++NY KI WGWRLSLG A VPA ++ VG L LP+TPNS++E+G+ +EA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R L++VRG +VD EF+DL+ AS ++ +++P+RNL ++K RP L + A+ IP FQQLT
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSM-AIAIPFFQQLT 299
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G+N I+FYAPV+F ++GFGS AAL S+VITG+ A ++S+ VDK+GRR FLE G +
Sbjct: 300 GINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQ 359
Query: 361 MIIYMVIVAITLALEFG-EGKP--LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF 417
M+I IVA + +FG +G P LP+ + +V+ IC++V + SWGPLGWLVPSE+F
Sbjct: 360 MLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIF 419
Query: 418 PLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 477
PLE+RSA QSV V N+ FT ++AQ FL LCHLKFG+F+ F V+IMS F+Y+FLPET
Sbjct: 420 PLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPET 479
Query: 478 KQVPIEEIYLLFENHWFWKR-IVKED 502
K +PIEE+ +++ HW+W R +V ED
Sbjct: 480 KGIPIEEMGQVWKQHWYWSRYVVDED 505
|
Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/505 (53%), Positives = 364/505 (72%), Gaps = 8/505 (1%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
M GGF GD ++A Y ++T + L C+VAAMGG +FGYD+G+SGGVTSM FLK F
Sbjct: 1 MPAGGFV-VGDGQKA--YPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRF 57
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP VYR++Q + YC+YD+ LT+FTSSLY A L+S+ AS VTR GRR S++ G
Sbjct: 58 FPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGG 117
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+ F GA++N A H+ ML++GRI LG GIGF NQAVPLYLSEMAP K RGA+N FQL+
Sbjct: 118 ILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLS 177
Query: 181 TCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239
+GILVA ++NY KI WGWRLSLG A VPA ++ +G L LP+TPNS++E+G+ +E
Sbjct: 178 ITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEE 237
Query: 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299
A+ L ++RG +V EF DL+ AS +++I++P+RNL ++K RP L + A+ IP FQQL
Sbjct: 238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTM-AVMIPFFQQL 296
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F ++GF + A+L S+V+TG A L+S+ VD++GRR FLE GT
Sbjct: 297 TGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGT 356
Query: 360 EMIIYMVIVAITLALEFG-EGKP--LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSEL 416
+M+I +VA + +FG +G P LPK I +V IC++V + SWGPLGWLVPSE+
Sbjct: 357 QMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEI 416
Query: 417 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476
FPLE+RSA QS+ V N++FT +IAQ FL LCHLKFG+FLVF VV+MS F+Y FLPE
Sbjct: 417 FPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPE 476
Query: 477 TKQVPIEEIYLLFENHWFWKRIVKE 501
TK +PIEE+ ++ +HW+W R V++
Sbjct: 477 TKGIPIEEMGQVWRSHWYWSRFVED 501
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/501 (52%), Positives = 370/501 (73%), Gaps = 7/501 (1%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F D + YE R+T++ +I C+VAAMGG LFGYD+G+SGGV SM+DFL +F
Sbjct: 1 MAGGAFID--ESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKF 58
Query: 61 FPKVYRRKQAHL-TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FP V R+ Q ET+YCKYDN++LTLFTSSLY A L ++F AS +TR GR+ S+++G
Sbjct: 59 FPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIG 118
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
S++F GA+LN A+++ ML++GR+FLG+G+GF NQ+VPLYLSEMAPAKIRGA+N FQL
Sbjct: 119 SLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQL 178
Query: 180 TTCLGILVANLINYGTEKIHPW-GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
+GIL AN++NY T K+ GWRLSLGLA VPA +M VG FLP+TPNS++E+G +
Sbjct: 179 AITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKE 238
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
+A+++L+K+RGT V+ EF++L +A AA+ +K+P+ N+ + + RPQL IP FQQ
Sbjct: 239 KAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTF-IPFFQQ 297
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+N I+FYAPV+F+++GFG+ A+L S+VITG+ ++ ++S+ VDKFGRRA FL+ G
Sbjct: 298 LTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGG 357
Query: 359 TEMIIYMVIVAITLALEFG-EGKPLPKGIGIFLVI-VICLFVLAYGRSWGPLGWLVPSEL 416
+MI+ + V + +FG G+ G+ +++ +ICL+V + SWGPLGWLVPSE+
Sbjct: 358 FQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEI 417
Query: 417 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476
PLE+RSAGQS+ V N+ FT I Q FL LCH+KFG+F F G+V+IM+ FIYF LPE
Sbjct: 418 CPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPE 477
Query: 477 TKQVPIEEIYLLFENHWFWKR 497
TK VPIEE+ +++ H +W +
Sbjct: 478 TKGVPIEEMGKVWKEHRYWGK 498
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | ||||||
| 255552117 | 516 | sugar transporter, putative [Ricinus com | 0.990 | 0.980 | 0.834 | 0.0 | |
| 224142179 | 508 | predicted protein [Populus trichocarpa] | 0.970 | 0.976 | 0.836 | 0.0 | |
| 449466087 | 522 | PREDICTED: sugar transport protein 14-li | 0.972 | 0.952 | 0.828 | 0.0 | |
| 255589859 | 509 | sugar transporter, putative [Ricinus com | 0.976 | 0.980 | 0.809 | 0.0 | |
| 356495228 | 510 | PREDICTED: sugar transport protein 14-li | 0.984 | 0.986 | 0.787 | 0.0 | |
| 356529642 | 512 | PREDICTED: sugar transport protein 14-li | 0.980 | 0.978 | 0.786 | 0.0 | |
| 225445142 | 512 | PREDICTED: sugar transport protein 14 [V | 0.994 | 0.992 | 0.778 | 0.0 | |
| 147799431 | 547 | hypothetical protein VITISV_012307 [Viti | 0.978 | 0.914 | 0.788 | 0.0 | |
| 449443165 | 508 | PREDICTED: sugar transport protein 14-li | 0.988 | 0.994 | 0.780 | 0.0 | |
| 449521365 | 534 | PREDICTED: sugar transport protein 14-li | 0.982 | 0.940 | 0.778 | 0.0 |
| >gi|255552117|ref|XP_002517103.1| sugar transporter, putative [Ricinus communis] gi|223543738|gb|EEF45266.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/508 (83%), Positives = 474/508 (93%), Gaps = 2/508 (0%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGG +D G LKRAHLYEY+IT YF+ + +VAA+GGSLFGYDLGVSGGVTSMDDFLK+F
Sbjct: 1 MAGGGLSDGGPLKRAHLYEYKITGYFIFSSIVAALGGSLFGYDLGVSGGVTSMDDFLKDF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY+RKQ HL ETDYCKYDNQ+LTLFTSSLYFA LVSTFGASY+TR++GRRASI+VGS
Sbjct: 61 FPKVYKRKQEHLNETDYCKYDNQMLTLFTSSLYFAALVSTFGASYITRNKGRRASIIVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+SFF+GAILNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT
Sbjct: 121 ISFFLGAILNAAAVNIAMLIIGRILLGIGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+ANLINYGTEKIHPWGWRLSLGLATVPATLMF+GG+FLPETPNSLVEQG+L+E
Sbjct: 181 TCLGILIANLINYGTEKIHPWGWRLSLGLATVPATLMFIGGVFLPETPNSLVEQGRLEEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
RKVLEKVRGTA VDAEF+DLIDASNAARAI++PF+NL K+KNRPQL+IGALGIPAFQQLT
Sbjct: 241 RKVLEKVRGTAKVDAEFADLIDASNAARAIQHPFKNLLKRKNRPQLIIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPVIFQSLGFGSGAALYSSVIT AL + ALISMA VDK+GRRAFFLEAGTE
Sbjct: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITSGALVLGALISMALVDKYGRRAFFLEAGTE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
M+ YMV VAITLAL+FG+G LPK IGIFLVI+ICLFVLAYGRSWGPLGWLVPSE+FPLE
Sbjct: 361 MLCYMVAVAITLALKFGQGVTLPKEIGIFLVIIICLFVLAYGRSWGPLGWLVPSEIFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
RSAGQS+VVC N+LFTALIAQ FL +LCHL++GIFLVFGGL++IMS+FI+F LPETKQV
Sbjct: 421 TRSAGQSMVVCVNMLFTALIAQCFLVSLCHLRYGIFLVFGGLILIMSSFIFFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVKEDNGKFVE 508
PIEE+YLL++NHWFWKRIV NG VE
Sbjct: 481 PIEEVYLLWQNHWFWKRIV--GNGDQVE 506
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142179|ref|XP_002324436.1| predicted protein [Populus trichocarpa] gi|222865870|gb|EEF03001.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/496 (83%), Positives = 457/496 (92%)
Query: 4 GGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPK 63
GGF DAG+LKRAHLYEY+IT YF+ AC+VAA+GGSLFGYDLGVSGGVTSMDDFL EFFP
Sbjct: 3 GGFVDAGNLKRAHLYEYKITGYFIFACIVAALGGSLFGYDLGVSGGVTSMDDFLVEFFPD 62
Query: 64 VYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF 123
VYRRK AHL ETDYCKYD+QVLTLFTSSLYFA LVSTFGASYVTRSRGRRASI+VG+VSF
Sbjct: 63 VYRRKHAHLRETDYCKYDDQVLTLFTSSLYFAALVSTFGASYVTRSRGRRASILVGAVSF 122
Query: 124 FIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183
F GA++NA A +I+ML++GR FLG GIGF NQAVPLYLSEMAPAK+RGAVNQLFQLTTCL
Sbjct: 123 FTGALVNAFAKNITMLIIGRCFLGAGIGFSNQAVPLYLSEMAPAKVRGAVNQLFQLTTCL 182
Query: 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKV 243
GILVAN INYGTEKIHPWGWRLSLGLATVPAT+MFVGG+FLPETPNSLVEQGKL+EAR+V
Sbjct: 183 GILVANFINYGTEKIHPWGWRLSLGLATVPATIMFVGGIFLPETPNSLVEQGKLEEARRV 242
Query: 244 LEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMN 303
LEKVRGT VDAEF+DL+DASN ARAIK+PFRNL +KNRPQ +IGAL IPAFQQLTGMN
Sbjct: 243 LEKVRGTTRVDAEFADLVDASNEARAIKHPFRNLLARKNRPQFIIGALAIPAFQQLTGMN 302
Query: 304 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 363
SILFYAPV+FQSLGF + A+L+SSVIT AL + ALISMA VDKFGRRAFFLEAGTEM
Sbjct: 303 SILFYAPVLFQSLGFSNDASLFSSVITNAALVVGALISMALVDKFGRRAFFLEAGTEMFF 362
Query: 364 YMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS 423
M+ V ITLAL+FGEGKP+PKGIGIFLVI ICLFVLAYGRSWGPLGWLVPSELFPLEMRS
Sbjct: 363 VMIAVTITLALKFGEGKPIPKGIGIFLVIAICLFVLAYGRSWGPLGWLVPSELFPLEMRS 422
Query: 424 AGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIE 483
AGQSVVVC N++FTALIAQ FL +LCHLK+GIFL+FGGL+ IMSAFI+FFLPETKQVPIE
Sbjct: 423 AGQSVVVCVNMIFTALIAQCFLISLCHLKYGIFLLFGGLIFIMSAFIFFFLPETKQVPIE 482
Query: 484 EIYLLFENHWFWKRIV 499
E+YLL++NHWFWKRIV
Sbjct: 483 EVYLLWQNHWFWKRIV 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466087|ref|XP_004150758.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] gi|449527949|ref|XP_004170970.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/497 (82%), Positives = 456/497 (91%)
Query: 12 LKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAH 71
LKRAHLYEYRITSYF+ AC+VAA+GGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQ H
Sbjct: 13 LKRAHLYEYRITSYFVTACIVAALGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQLH 72
Query: 72 LTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA 131
L ETDYCKYDNQ+LTLFTSSLYFAGLVSTF ASYVTR+RGRRASI+VGS+SFF+G ++NA
Sbjct: 73 LKETDYCKYDNQILTLFTSSLYFAGLVSTFAASYVTRNRGRRASILVGSISFFLGGVINA 132
Query: 132 CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191
AV+I ML++GRIFLG+GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL+AN I
Sbjct: 133 AAVNIEMLIIGRIFLGVGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILIANFI 192
Query: 192 NYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTA 251
NYGT+KIHPWGWRLSLGLATVPATLMF+GGLFLPETPNSLVEQGK++E R VLEK+RGT
Sbjct: 193 NYGTDKIHPWGWRLSLGLATVPATLMFIGGLFLPETPNSLVEQGKMEEGRAVLEKIRGTK 252
Query: 252 NVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 311
VDAEF DLIDASN ARAIK+PF+NL K+KNRPQLVIGALGIPAFQQLTGMNSILFYAPV
Sbjct: 253 KVDAEFDDLIDASNEARAIKHPFKNLLKRKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 312
Query: 312 IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 371
+FQSLGFGS AALYSS IT AL +A ISM VDKFGRRAFFLEAG EMI ++ VA+T
Sbjct: 313 MFQSLGFGSDAALYSSTITSGALVVATFISMLLVDKFGRRAFFLEAGAEMICCLIAVAVT 372
Query: 372 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVC 431
LAL+FG+G+ LPKGIGIFLVIVIC+FVLAYGRSWGPLGWLVPSELFPLE RSAGQS+VVC
Sbjct: 373 LALKFGQGEELPKGIGIFLVIVICIFVLAYGRSWGPLGWLVPSELFPLETRSAGQSMVVC 432
Query: 432 NNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFEN 491
N+LFTALIAQ FLAALCHL++GIFL+F GL+VIMS+FI+F LPETKQVPIEE+YLL+EN
Sbjct: 433 VNMLFTALIAQCFLAALCHLRYGIFLLFAGLIVIMSSFIFFLLPETKQVPIEEVYLLWEN 492
Query: 492 HWFWKRIVKEDNGKFVE 508
HWFWK IV ++ V
Sbjct: 493 HWFWKIIVGKEGANGVN 509
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255589859|ref|XP_002535110.1| sugar transporter, putative [Ricinus communis] gi|223524019|gb|EEF27275.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/499 (80%), Positives = 455/499 (91%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGFTD G++KRAHLYEY+ITSYF+ AC++AA GGSLFGYDLGVSGGVTSMDDFLKEF
Sbjct: 1 MAGGGFTDTGNIKRAHLYEYKITSYFVFACVIAASGGSLFGYDLGVSGGVTSMDDFLKEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP V+ +K AHL ETDYCKYDNQ+LTLF+SSLYFA L +TFGAS VTR+RGRRASI+VGS
Sbjct: 61 FPTVFEKKHAHLHETDYCKYDNQILTLFSSSLYFAALFATFGASVVTRTRGRRASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFFIGAI+NA A +I+ML++GR LG GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT
Sbjct: 121 VSFFIGAIVNAFAKNIAMLIIGRCLLGGGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGILVAN INYGTEKIHPWGWRLSLGLA +PAT+MFVGGLFLPETPNSL+EQGKL+E
Sbjct: 181 TCLGILVANFINYGTEKIHPWGWRLSLGLAALPATIMFVGGLFLPETPNSLIEQGKLEEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R++LEKVRGT VDAEF DL+DASNAARAIK+PF+NL K+KNRPQLVIGALGIPAFQQLT
Sbjct: 241 RRILEKVRGTTQVDAEFDDLVDASNAARAIKHPFKNLLKRKNRPQLVIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVIFQSLGF +GA+LYS+VIT AL + ALISM+FVDKFGRRAFFLEAG E
Sbjct: 301 GNNSILFYAPVIFQSLGFSNGASLYSAVITNSALVVGALISMSFVDKFGRRAFFLEAGAE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
M MV V ITLALEFGEGKP+ KG GIFLVI+ICLFVLAYGRSWGPLGWLVPSE+FPLE
Sbjct: 361 MFFIMVAVGITLALEFGEGKPIAKGTGIFLVIIICLFVLAYGRSWGPLGWLVPSEIFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
RSAGQSVVVC N++FTAL+AQ FL +LCHLK+GIFL+F L+++MSAFI+F LPETKQV
Sbjct: 421 TRSAGQSVVVCVNMIFTALVAQCFLVSLCHLKYGIFLLFAALILVMSAFIFFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIV 499
PIEE++LL++NHWFW +IV
Sbjct: 481 PIEEMHLLWQNHWFWGKIV 499
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495228|ref|XP_003516481.1| PREDICTED: sugar transport protein 14-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/503 (78%), Positives = 450/503 (89%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGF+DAG LKRAHLY+Y+IT YF+ +C+V A+GGSLFGYDLGVSGGVTSMDDFL EF
Sbjct: 1 MAGGGFSDAGTLKRAHLYQYKITGYFIYSCIVGALGGSLFGYDLGVSGGVTSMDDFLIEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY +K AHL ETDYCKYD+Q LTLFTSSLYFA LVSTFGAS VT+++GR+ASI+ GS
Sbjct: 61 FPKVYEKKHAHLVETDYCKYDDQTLTLFTSSLYFAALVSTFGASSVTKNKGRKASILAGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFFIGAILNA A +ISML++GRI LG+GIGFGNQAVPLYLSEMAP+K+RGAVNQLFQLT
Sbjct: 121 VSFFIGAILNAAARNISMLIIGRILLGVGIGFGNQAVPLYLSEMAPSKVRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+ANL+NYGTEK+HPWGWRLSLGLAT PA LMF+GGLF PETPNSLVEQG+ DE
Sbjct: 181 TCLGILIANLVNYGTEKLHPWGWRLSLGLATFPAVLMFIGGLFCPETPNSLVEQGRFDEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R VLEKVRGT NVDAEF DLI+AS A++IKNPF+NL +KNRPQL+IGA+ IPAFQQLT
Sbjct: 241 RAVLEKVRGTPNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQLIIGAVAIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVIFQ+LGFGSGA+LYSSVIT +AL +A LISMAFVD+FGRRAFFLEAG E
Sbjct: 301 GNNSILFYAPVIFQTLGFGSGASLYSSVITSVALVVATLISMAFVDRFGRRAFFLEAGAE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
MII MV +AI L++EFG+GK L G+ IFLVIVI LFVLAYGRSWGPLGWLVPSELFPLE
Sbjct: 361 MIICMVAMAIVLSVEFGKGKELSYGVSIFLVIVIFLFVLAYGRSWGPLGWLVPSELFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
+RSA QSVVVC N++FTAL+AQ FL +LCHLK+GIFL+F +V+MS F++F LPETKQV
Sbjct: 421 IRSAAQSVVVCVNMIFTALVAQFFLVSLCHLKYGIFLLFAAFIVLMSCFVFFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVKEDN 503
PIEEIYLLFE HWFWKR+V E N
Sbjct: 481 PIEEIYLLFEKHWFWKRVVGEGN 503
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529642|ref|XP_003533398.1| PREDICTED: sugar transport protein 14-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/501 (78%), Positives = 448/501 (89%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGF+DAG LKRAHLY+Y+IT YF+ +C+V A+GG+LFGYDLGVSGGVTSMDDFL +F
Sbjct: 1 MAGGGFSDAGTLKRAHLYQYKITGYFIFSCIVGALGGALFGYDLGVSGGVTSMDDFLIQF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY +K AHL ETDYCKYD+Q+LTLFTSSLYFA LVSTFGAS VT+++GR+ASI+ GS
Sbjct: 61 FPKVYEKKHAHLAETDYCKYDDQILTLFTSSLYFAALVSTFGASSVTKTKGRKASILAGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFFIGAILNA A I+ML+LGRI LG+GIGFGNQAVPLYLSEMAPAK+RGAVNQLFQLT
Sbjct: 121 VSFFIGAILNAAAKSITMLILGRILLGVGIGFGNQAVPLYLSEMAPAKVRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+ANL+NYGTEKIHPWGWRLSLGLATVPA MF+GG PETPNSLVEQG+ DE
Sbjct: 181 TCLGILIANLVNYGTEKIHPWGWRLSLGLATVPAVFMFIGGCLCPETPNSLVEQGRFDEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R VLEKVRGT NVDAEF DLI+AS A++IKNPF+NL +KNRPQ++IGA IPAFQQLT
Sbjct: 241 RAVLEKVRGTPNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQVIIGAFAIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVIFQ+LGFGSGA+LYSSVIT +AL +A LISMAFVDKFGRRAFFLEAG E
Sbjct: 301 GNNSILFYAPVIFQTLGFGSGASLYSSVITSVALVVATLISMAFVDKFGRRAFFLEAGAE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
MII +V +AI L++EFG+GK L G+ IFLVIVI LFVLAYGRSWGPLGWLVPSELFPLE
Sbjct: 361 MIICLVAMAIVLSVEFGKGKELSYGVSIFLVIVIFLFVLAYGRSWGPLGWLVPSELFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
+RSA QSVVVC N++FTAL+AQ FL +LCHLK+GIFL+F L+V+MS F++F LPETKQV
Sbjct: 421 IRSAAQSVVVCVNMIFTALVAQFFLVSLCHLKYGIFLLFAALIVLMSCFVFFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVKE 501
PIEEIYLLFENHWFWKR+V E
Sbjct: 481 PIEEIYLLFENHWFWKRVVGE 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445142|ref|XP_002283960.1| PREDICTED: sugar transport protein 14 [Vitis vinifera] gi|297738778|emb|CBI28023.3| unnamed protein product [Vitis vinifera] gi|310877808|gb|ADP37135.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/511 (77%), Positives = 454/511 (88%), Gaps = 3/511 (0%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F D KRAHLYEY+IT YF+ +C+VAA GG+LFGYDLGVSGGVTSMDDFLK F
Sbjct: 1 MAGGAFEDTEAAKRAHLYEYKITGYFIFSCIVAASGGALFGYDLGVSGGVTSMDDFLKRF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVYRRKQ HL ETDYCKY++Q+LTLFTSSLYFAGLVSTF AS+VTR +GR+ASI+VGS
Sbjct: 61 FPKVYRRKQEHLKETDYCKYESQILTLFTSSLYFAGLVSTFAASHVTRKKGRKASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+SFF+GA+LNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEM+PAKIRGAVNQLFQL+
Sbjct: 121 ISFFLGAVLNAAAVNIAMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKIRGAVNQLFQLS 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGILVAN INY T+K+HPWGWRLSLGLATVPAT+MF+GGL LPETPNSLVEQGK +EA
Sbjct: 181 TCLGILVANFINYETDKLHPWGWRLSLGLATVPATVMFLGGLALPETPNSLVEQGKFEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
RKVLEKVRGT+ ++AEF+DL+DAS AA+AIK+PFRNL K++NRPQL+IGALGIPAFQQLT
Sbjct: 241 RKVLEKVRGTSKIEAEFADLVDASKAAQAIKHPFRNLLKRRNRPQLIIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPVIFQSLGFGS A+LYSS+IT AL +A+LISMAFVD++GRR FFLEAG E
Sbjct: 301 GMNSILFYAPVIFQSLGFGSNASLYSSLITSGALVLASLISMAFVDRWGRRKFFLEAGCE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
MI YMV VAITLALEFG+GK LPKG FLVI+I LFVLAYGRSWGPLGWLVPSELFPLE
Sbjct: 361 MICYMVAVAITLALEFGQGKTLPKGTSYFLVIIISLFVLAYGRSWGPLGWLVPSELFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
RSAGQS+VVC NL FTALIAQ FL +LCHL++GIFLVF GL++IMS FIYF LPETKQV
Sbjct: 421 TRSAGQSMVVCVNLFFTALIAQCFLVSLCHLRYGIFLVFAGLIIIMSCFIYFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVKED---NGKFVE 508
PIEE+ L+ H WK+IV ++ GK E
Sbjct: 481 PIEEVCYLWSKHPIWKKIVGDEPRTEGKSAE 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799431|emb|CAN76865.1| hypothetical protein VITISV_012307 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/500 (78%), Positives = 449/500 (89%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F D KRAHLYEY+IT YF+ +C+VAA GG+LFGYDLGVSGGVTSMDDFLK F
Sbjct: 1 MAGGAFEDTEAAKRAHLYEYKITGYFIFSCIVAASGGALFGYDLGVSGGVTSMDDFLKRF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVYRRKQ HL ETDYCKY++Q+LTLFTSSLYFAGLVSTF AS+VTR +GR+ASI+VGS
Sbjct: 61 FPKVYRRKQEHLKETDYCKYESQILTLFTSSLYFAGLVSTFAASHVTRKKGRKASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+SFF+GA+LNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEM+PAKIRGAVNQLFQL+
Sbjct: 121 ISFFLGAVLNAAAVNIAMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKIRGAVNQLFQLS 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGILVAN INY T+K+HPWGWRLSLGLATVPAT+MF+GGL LPETPNSLVEQGK +EA
Sbjct: 181 TCLGILVANFINYETDKLHPWGWRLSLGLATVPATVMFLGGLALPETPNSLVEQGKFEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
RKVLEKVRGT+ ++AEF+DL+DAS AA+AIK+PFRNL K++NRPQL+IGALGIPAFQQLT
Sbjct: 241 RKVLEKVRGTSKIEAEFADLVDASKAAQAIKHPFRNLLKRRNRPQLIIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPVIFQSLGFGS A+LYSS+IT AL +A+LISMAFVD++GRR FFLEAG E
Sbjct: 301 GMNSILFYAPVIFQSLGFGSNASLYSSLITSGALVLASLISMAFVDRWGRRKFFLEAGCE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
MI YMV VAITLALEFG+GK LPKG FLVI+I LFVLAYGRSWGPLGWLVPSELFPLE
Sbjct: 361 MICYMVAVAITLALEFGQGKTLPKGTSYFLVIIISLFVLAYGRSWGPLGWLVPSELFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
RSAGQS+VVC NL FTALIAQ FL +LCHL++GIFLVF GL++IMS FIYF LPETKQV
Sbjct: 421 TRSAGQSMVVCVNLFFTALIAQCFLVSLCHLRYGIFLVFAGLIIIMSCFIYFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVK 500
PIEE+ L+ H WK+I +
Sbjct: 481 PIEEVCYLWSKHPIWKKIER 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443165|ref|XP_004139351.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/505 (78%), Positives = 449/505 (88%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGFT+ G LKRAHLYEY+ T YF AC+VAA+GGSLFGYDLGVSGGVTSMDDFLK+F
Sbjct: 1 MAGGGFTNGGQLKRAHLYEYKFTWYFFSACVVAALGGSLFGYDLGVSGGVTSMDDFLKQF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY RKQ H+ ETDYCKYD+Q+LTLFTSSLYFAGL+STF AS+VTR+ GRRASI+VGS
Sbjct: 61 FPKVYNRKQLHIKETDYCKYDDQILTLFTSSLYFAGLLSTFFASHVTRNYGRRASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFF+G ++NA A++I ML++GRI LG+GIGFGNQAVPLYLSE+APAKIRG VNQLFQLT
Sbjct: 121 VSFFLGGLINAVAINIPMLIIGRILLGIGIGFGNQAVPLYLSEIAPAKIRGRVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+AN INYGTEKIHPWGWRLSLGLAT PA +MF+GGLFLPETPNSLVEQGKL+EA
Sbjct: 181 TCLGILIANFINYGTEKIHPWGWRLSLGLATFPAAMMFIGGLFLPETPNSLVEQGKLEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R+VLEK+RGT N++AEF+DL+DASN ARA+KNPFRNL ++KNRPQLVIGA+GIPAFQQLT
Sbjct: 241 RRVLEKIRGTTNIEAEFADLVDASNQARAVKNPFRNLLRRKNRPQLVIGAIGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVI QSLGFGS A+LYSS T AL +AALISM VDKFGRR FFLEAG E
Sbjct: 301 GNNSILFYAPVILQSLGFGSAASLYSSAFTSGALVVAALISMFLVDKFGRRKFFLEAGFE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
M +YM+ VAITL L FG+GK L KG+ I LV +I LFVLAYGRSWGPLGWLVPSELFPLE
Sbjct: 361 MFVYMIAVAITLKLNFGQGKELSKGVSILLVCLIWLFVLAYGRSWGPLGWLVPSELFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
RSAGQS+VVC NLLFTALIAQ FLAA+CHL++GIF++F L+ +MS FIYF LPETKQV
Sbjct: 421 TRSAGQSIVVCVNLLFTALIAQCFLAAMCHLRYGIFILFAALIFLMSCFIYFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVKEDNGK 505
PIEEIYLL+ENH FWK V++D+ +
Sbjct: 481 PIEEIYLLWENHPFWKSFVRDDDHQ 505
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521365|ref|XP_004167700.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/502 (77%), Positives = 446/502 (88%)
Query: 4 GGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPK 63
GGFT+ G LKRAHLYEY+ T YF AC+VAA+GGSLFGYDLGVSGGVTSMDDFLK+FFPK
Sbjct: 30 GGFTNGGQLKRAHLYEYKFTWYFFSACVVAALGGSLFGYDLGVSGGVTSMDDFLKQFFPK 89
Query: 64 VYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF 123
VY RKQ H+ ETDYCKYD+Q+LTLFTSSLYFAGL+STF AS+VTR+ GRRASI+VGSVSF
Sbjct: 90 VYNRKQLHIKETDYCKYDDQILTLFTSSLYFAGLLSTFFASHVTRNYGRRASILVGSVSF 149
Query: 124 FIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183
F+G ++NA A++I ML++GRI LG+GIGFGNQAVPLYLSE+APAKIRG VNQLFQLTTCL
Sbjct: 150 FLGGLINAVAINIPMLIIGRILLGIGIGFGNQAVPLYLSEIAPAKIRGRVNQLFQLTTCL 209
Query: 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKV 243
GIL+AN INYGTEKIHPWGWRLSLGLAT PA +MF+GGLFLPETPNSLVEQGKL+EAR+V
Sbjct: 210 GILIANFINYGTEKIHPWGWRLSLGLATFPAAMMFIGGLFLPETPNSLVEQGKLEEARRV 269
Query: 244 LEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMN 303
LEK+RGT N++AEF+DL+DASN ARA+KNPFRNL ++KNRPQLVIGA+GIPAFQQLTG N
Sbjct: 270 LEKIRGTTNIEAEFADLVDASNQARAVKNPFRNLLRRKNRPQLVIGAIGIPAFQQLTGNN 329
Query: 304 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 363
SILFYAPVI QSLGFGS A+LYSS T AL +AALISM VDKFGRR FFLEAG EM +
Sbjct: 330 SILFYAPVILQSLGFGSAASLYSSAFTSGALVVAALISMFLVDKFGRRKFFLEAGFEMFV 389
Query: 364 YMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS 423
YM+ VAITL L FG+GK L KG+ I LV +I LFVLAYGRSWGPLGWLVPSELFPLE RS
Sbjct: 390 YMIAVAITLKLNFGQGKELSKGVSILLVCLIWLFVLAYGRSWGPLGWLVPSELFPLETRS 449
Query: 424 AGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIE 483
AGQS+VVC NLLFTALIAQ FLAA+CHL++GIF++F L+ +MS FIYF LPETKQVPIE
Sbjct: 450 AGQSIVVCVNLLFTALIAQCFLAAMCHLRYGIFILFAALIFLMSCFIYFLLPETKQVPIE 509
Query: 484 EIYLLFENHWFWKRIVKEDNGK 505
EIYLL+ENH FWK V++D+ +
Sbjct: 510 EIYLLWENHPFWKSFVRDDDHQ 531
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | ||||||
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.980 | 0.994 | 0.768 | 5.3e-214 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.974 | 0.970 | 0.612 | 1.1e-167 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.990 | 0.961 | 0.562 | 2.5e-152 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.978 | 0.972 | 0.529 | 2.5e-145 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.978 | 0.967 | 0.528 | 1.2e-143 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.986 | 0.965 | 0.528 | 5.3e-143 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.988 | 0.982 | 0.523 | 2.3e-142 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.970 | 0.964 | 0.498 | 1.8e-135 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.962 | 0.970 | 0.483 | 1.9e-131 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.956 | 0.964 | 0.485 | 3.5e-130 |
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2068 (733.0 bits), Expect = 5.3e-214, P = 5.3e-214
Identities = 385/501 (76%), Positives = 441/501 (88%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG TD G LKRAHLYE+RITSYF+ AC+V +MGGSLFGYDLGVSGGVTSMDDFLKEF
Sbjct: 1 MAGGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP +Y+RKQ HL ETDYCKYDNQ+LTLFTSSLYFAGL+STFGASYVTR GRR SI+VGS
Sbjct: 61 FPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFF+G ++NA A +I ML+LGRIFLG+GIGFGNQAVPLYLSEMAPAKIRG VNQLFQLT
Sbjct: 121 VSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TC+GILVANLINY TE+IHPWGWRLSLGLATVPA LMF+GGL LPETPNSLVEQGKL++A
Sbjct: 181 TCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+ VL KVRGT N++AEF DL++AS+AARA+KNPFRNL ++NRPQLVIGA+G+PAFQQLT
Sbjct: 241 KAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPV+FQSLGFG A+L SS IT AL +AA++SM DKFGRR LEA E
Sbjct: 301 GMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVE 360
Query: 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420
M YMV+V +TLAL+FGEGK LPK +G+ LV++ICLFVLAYGRSWGP+GWLVPSELFPLE
Sbjct: 361 MFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLE 420
Query: 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQV 480
RSAGQSVVVC NL FTALIAQ FL +LCHLK+GIFL+F GL++ M +F+YF LPETKQV
Sbjct: 421 TRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQV 480
Query: 481 PIEEIYLLFENHWFWKRIVKE 501
PIEE+YLL+ HW WK+ V++
Sbjct: 481 PIEEVYLLWRQHWLWKKYVED 501
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
Identities = 308/503 (61%), Positives = 393/503 (78%)
Query: 1 MAGGGFTDAGDLK-RAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
MAGG F G K RA Y+ ++TSY +IAC+VAA+GGS+FGYD+G+SGGVTSMD+FL+E
Sbjct: 1 MAGGSFGPTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEE 60
Query: 60 FFPKVY-RRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118
FF VY ++KQAH E++YCKYDNQ L FTSSLY AGLVST AS +TR+ GRRASI+
Sbjct: 61 FFHTVYEKKKQAH--ESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVC 118
Query: 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178
G +SF IG+ LNA AV+++MLL GRI LG+GIGFGNQAVPLYLSE+AP +RG +N +FQ
Sbjct: 119 GGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQ 178
Query: 179 LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
L T +GI AN++NYGT+++ PWGWRLSLGLA PA LM +GG FLPETPNSLVE+G +
Sbjct: 179 LATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
R+VL K+RGT NV+AE D++DAS A +IK+PFRN+ +K++RPQLV+ A+ +P FQ
Sbjct: 239 RGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVM-AICMPMFQI 297
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+NSILFYAPV+FQ++GFG A+LYSS +TG L ++ IS+ VD+ GRRA + G
Sbjct: 298 LTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGG 357
Query: 359 TEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP 418
+MII VIVA+ L ++FG+ + L KG + +VI ICLFV+A+G SWGPLGW +PSE+FP
Sbjct: 358 IQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFP 417
Query: 419 LEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 478
LE RSAGQS+ V NLLFT +IAQAFL LC KFGIFL F G V +M+ F+YF LPETK
Sbjct: 418 LETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETK 477
Query: 479 QVPIEEIYLLFENHWFWKRIVKE 501
VPIEE+ LL+ HWFWK+++ +
Sbjct: 478 GVPIEEMTLLWSKHWFWKKVLPD 500
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
Identities = 291/517 (56%), Positives = 380/517 (73%)
Query: 1 MAGGGF-TDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
M GGGF T A ++ +E +IT +I+C++AA GG +FGYD+GVSGGVTSM DFL++
Sbjct: 1 MTGGGFATSANGVE----FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEK 56
Query: 60 FFPKVYRRKQAHLT-ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118
FFP VYR+ A +++YCKYDNQ L LFTSSLY AGL +TF ASY TR+ GRR ++++
Sbjct: 57 FFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLI 116
Query: 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178
V F IG LNA A ++ML+ GRI LG G+GF NQAVPL+LSE+AP +IRG +N LFQ
Sbjct: 117 AGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176
Query: 179 LTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKL 237
L +GIL ANL+NYGT KI WGWRLSLGLA +PA L+ VG L + ETPNSLVE+G+L
Sbjct: 177 LNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRL 236
Query: 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQ 297
DE + VL ++RGT NV+ EF+DL++AS A+ +K+PFRNL +++NRPQLVI A+ + FQ
Sbjct: 237 DEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI-AVALQIFQ 295
Query: 298 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEA 357
Q TG+N+I+FYAPV+F +LGFGS A+LYS+V+TG ++ L+S+ VDK GRR LEA
Sbjct: 296 QCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEA 355
Query: 358 GTEMIIYMVIVAITLALEFGEGKP-LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSEL 416
G +M V++AI L ++ + L KG I +V++IC +V A+ SWGPLGWL+PSE
Sbjct: 356 GVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSET 415
Query: 417 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476
FPLE RSAGQSV VC NLLFT +IAQAFL+ LCH KFGIF+ F V+IMS F+ F LPE
Sbjct: 416 FPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPE 475
Query: 477 TKQVPIEEIY-LLFENHWFWKRIVKEDNG-KFVEPVK 511
TK +PIEE+ +++ HWFW R + + N +FV K
Sbjct: 476 TKNIPIEEMTERVWKKHWFWARFMDDHNDHEFVNGEK 512
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
Identities = 267/504 (52%), Positives = 366/504 (72%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F G YE +T++ ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSEGG-GGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V + + +T YCK+DNQ+L LFTSSLY A LV++F AS +TR GR+ S+ +G
Sbjct: 60 FPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
++F IGA+ NA AV++SML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 LAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GILVANLINYGT K+ GWR+SLGLA VPA +M +G LP+TPNS++E+GK +EA
Sbjct: 180 ITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+++L+K+RG NVD EF DLIDA AA+ ++NP++N+ + K RP L+ + IP FQQ+T
Sbjct: 240 KQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS-AIPFFQQIT 298
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G+N I+FYAPV+F++LGFG AAL S+VITG+ ++ +S+ VD++GRR FLE G +
Sbjct: 299 GINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQ 358
Query: 361 MIIYMVIVAITLALEFG-EGK-PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP 418
M I ++V + FG G L +++ IC++V + SWGPLGWLVPSE+ P
Sbjct: 359 MFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICP 418
Query: 419 LEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 478
LE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F F +V IM+ FIYF LPETK
Sbjct: 419 LEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETK 478
Query: 479 QVPIEEIYLLFENHWFWKRIVKED 502
VPIEE+ +++ HWFWK+ + ED
Sbjct: 479 GVPIEEMGRVWKQHWFWKKYIPED 502
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1404 (499.3 bits), Expect = 1.2e-143, P = 1.2e-143
Identities = 267/505 (52%), Positives = 367/505 (72%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F G + YE +T + ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSEGG-GGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V ++ ET YCK+DNQ+L LFTSSLY A L S+F AS VTR GR+ S+ VG
Sbjct: 60 FPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
V+F IG++ NA A +++ML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 VAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GIL+ANLINYGT ++ GWR+SLGLA VPA +M +G LP+TPNS++E+GK ++A
Sbjct: 180 ITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGALGIPAFQQL 299
R++L+K+RG NVD EF DL DA AA+ + NP++N+F++ K RP LV + IP FQQ+
Sbjct: 240 REMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS-AIPFFQQI 298
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F++LGF A+L S+VITG ++ L+S+ VD++GRR FLE G
Sbjct: 299 TGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGI 358
Query: 360 EMIIYMVIVAITLALEFGE-GK-PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF 417
+MI+ ++V + ++FG G L +++ ICL+V + SWGPLGWLVPSE+
Sbjct: 359 QMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEIC 418
Query: 418 PLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 477
PLE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F FGG+V +M+ FIYF LPET
Sbjct: 419 PLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPET 478
Query: 478 KQVPIEEIYLLFENHWFWKRIVKED 502
K VPIEE+ +++ H FWKR + +D
Sbjct: 479 KGVPIEEMGRVWKQHPFWKRYMPDD 503
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 271/513 (52%), Positives = 367/513 (71%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
M GGF GD ++A Y ++T + L C+VAAMGG +FGYD+G+SGGVTSM FLK F
Sbjct: 1 MPAGGFV-VGDGQKA--YPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRF 57
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP VYR++Q + YC+YD+ LT+FTSSLY A L+S+ AS VTR GRR S++ G
Sbjct: 58 FPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGG 117
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+ F GA++N A H+ ML++GRI LG GIGF NQAVPLYLSEMAP K RGA+N FQL+
Sbjct: 118 ILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLS 177
Query: 181 TCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239
+GILVA ++NY KI WGWRLSLG A VPA ++ +G L LP+TPNS++E+G+ +E
Sbjct: 178 ITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEE 237
Query: 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299
A+ L ++RG +V EF DL+ AS +++I++P+RNL ++K RP L + + IP FQQL
Sbjct: 238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVM-IPFFQQL 296
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F ++GF + A+L S+V+TG A L+S+ VD++GRR FLE GT
Sbjct: 297 TGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGT 356
Query: 360 EMIIYMVIVAITLALEFG-EGKP--LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSEL 416
+M+I +VA + +FG +G P LPK I +V IC++V + SWGPLGWLVPSE+
Sbjct: 357 QMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEI 416
Query: 417 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476
FPLE+RSA QS+ V N++FT +IAQ FL LCHLKFG+FLVF VV+MS F+Y FLPE
Sbjct: 417 FPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPE 476
Query: 477 TKQVPIEEIYLLFENHWFWKRIVKE-DNGKFVE 508
TK +PIEE+ ++ +HW+W R V++ + G +E
Sbjct: 477 TKGIPIEEMGQVWRSHWYWSRFVEDGEYGNALE 509
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 268/512 (52%), Positives = 374/512 (73%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F D YE R+T++ +I C+VAAMGG LFGYD+G+SGGV SM+DFL +F
Sbjct: 1 MAGGAFIDESG--HGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKF 58
Query: 61 FPKVYRRKQAHL-TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FP V R+ Q ET+YCKYDN++LTLFTSSLY A L ++F AS +TR GR+ S+++G
Sbjct: 59 FPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIG 118
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
S++F GA+LN A+++ ML++GR+FLG+G+GF NQ+VPLYLSEMAPAKIRGA+N FQL
Sbjct: 119 SLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQL 178
Query: 180 TTCLGILVANLINYGTEKIHPW-GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
+GIL AN++NY T K+ GWRLSLGLA VPA +M VG FLP+TPNS++E+G +
Sbjct: 179 AITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKE 238
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
+A+++L+K+RGT V+ EF++L +A AA+ +K+P+ N+ + + RPQL IP FQQ
Sbjct: 239 KAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTF-IPFFQQ 297
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+N I+FYAPV+F+++GFG+ A+L S+VITG+ ++ ++S+ VDKFGRRA FL+ G
Sbjct: 298 LTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGG 357
Query: 359 TEMIIYMVIVAITLALEFG-EGKPLPKGIGIFLVI-VICLFVLAYGRSWGPLGWLVPSEL 416
+MI+ + V + +FG G+ G+ +++ +ICL+V + SWGPLGWLVPSE+
Sbjct: 358 FQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEI 417
Query: 417 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476
PLE+RSAGQS+ V N+ FT I Q FL LCH+KFG+F F G+V+IM+ FIYF LPE
Sbjct: 418 CPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPE 477
Query: 477 TKQVPIEEIYLLFENHWFWKRIVKEDNGKFVE 508
TK VPIEE+ +++ H +W + D+G V+
Sbjct: 478 TKGVPIEEMGKVWKEHRYWGKYSNNDDGDDVD 509
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 252/506 (49%), Positives = 355/506 (70%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG + ++ Y Y++T + C + A GG +FGYDLG+SGGVTSM+ FL+EF
Sbjct: 1 MAGGFVSQTPGVRN---YNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEF 57
Query: 61 FPKVYRR-KQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FP VY++ K AH E +YC++D+Q+LTLFTSSLY A LVS+ AS +TR GR+ S+ +G
Sbjct: 58 FPYVYKKMKSAH--ENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLG 115
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
+FFIG+ N A +I+MLL+GRI LG G+GF NQ+VP+YLSEMAP +RGA N FQ+
Sbjct: 116 GFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQV 175
Query: 180 TTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
GI+VA +INY T ++ GWR+SLGLA VPA ++ +G L LP+TPNSL+E+G +
Sbjct: 176 AIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTE 235
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
EA+++L+ +RGT VD EF DLIDAS ++ +K+P++N+ + RPQL++ IP FQQ
Sbjct: 236 EAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCF-IPFFQQ 294
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+N I FYAPV+FQ+LGFGS A+L S+++TGI + +S+ VD+FGRR FL+ G
Sbjct: 295 LTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGG 354
Query: 359 TEMIIYMVIVAITLALEFGEGKP--LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSEL 416
+M++ + + + ++FG + K +V +IC++V + SWGPLGWLVPSE+
Sbjct: 355 IQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEI 414
Query: 417 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476
PLE+RSA Q++ V N+ FT L+AQ FL LCH+KFG+F F VVIM+ FIY LPE
Sbjct: 415 SPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPE 474
Query: 477 TKQVPIEEIYLLFENHWFWKRIVKED 502
TK VPIEE+ +++ HWFW + + ++
Sbjct: 475 TKNVPIEEMNRVWKAHWFWGKFIPDE 500
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
Identities = 240/496 (48%), Positives = 350/496 (70%)
Query: 15 AHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTE 74
A +E ++T Y I M+AA+GG +FGYD+G+SGGV++MDDFLKEFFP V+ RK+ H+ E
Sbjct: 10 APAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKK-HVHE 68
Query: 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV 134
+YCKYDNQ L LFTSSLY A LV++F AS GRR ++ S+ F IG L A AV
Sbjct: 69 NNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAV 128
Query: 135 HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYG 194
++ ML++GR+FLG G+GFGNQAVPL+LSE+APA++RG +N +FQL +GIL+AN++NY
Sbjct: 129 NLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYF 188
Query: 195 TEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVD 254
T +HP+GWR++LG A +PA ++ G L + ETP SL+E+ K +E ++ L K+RG +++
Sbjct: 189 TATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVDDIN 248
Query: 255 AEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314
E+ ++ A + A +K+P+R L K +RP +IG L + FQQ TG+N+I+FYAPV+FQ
Sbjct: 249 DEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGML-LQLFQQFTGINAIMFYAPVLFQ 307
Query: 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 374
++GFGS AAL S+VITG +A + + VD+ GRR L++ M+I +I+ I LA
Sbjct: 308 TVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIILAK 367
Query: 375 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNL 434
+ G L + + +VI +C++V+ + SWGPLGWL+PSE FPLE RSAG +V V N+
Sbjct: 368 DLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSCNM 427
Query: 435 LFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIY-LLFENHW 493
FT +IAQAFL+ LC ++ GIF F G +++M F +FF+PETK + I+++ +++ HW
Sbjct: 428 FFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKPHW 487
Query: 494 FWKR-IVKEDNGKFVE 508
FWKR ++ ED+ +E
Sbjct: 488 FWKRYMLPEDDHHDIE 503
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
Identities = 239/492 (48%), Positives = 344/492 (69%)
Query: 18 YEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDY 77
++ ++T Y I ++AA+GG +FGYD+G+SGGVT+MDDFLKEFFP VY RK+ H E +Y
Sbjct: 14 FDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKK-HAHENNY 72
Query: 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS 137
CKYDNQ L LFTSSLY A LV++F AS GRR ++ + S+ F IG L A AV+I
Sbjct: 73 CKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIY 132
Query: 138 MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK 197
ML++GRI LG G+GFGNQAVPL+LSE+APA++RG +N +FQL +GIL+AN++NY T
Sbjct: 133 MLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYFTSS 192
Query: 198 IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEF 257
IHP+GWR++LG A +PA ++ G L + ETP SL+E+ K E ++ L+K+RG +VD E+
Sbjct: 193 IHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDVDEEY 252
Query: 258 SDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317
++ A + AR +K+P+ L K +RP VIG L + FQQ TG+N+I+FYAPV+FQ++G
Sbjct: 253 ESIVHACDIARQVKDPYTKLMKPASRPPFVIGML-LQFFQQFTGINAIMFYAPVLFQTVG 311
Query: 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 377
FG+ AAL S+V+TG ++ + + VDK GRR L++ M+I +++ I LA +
Sbjct: 312 FGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILAKDLD 371
Query: 378 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT 437
L + + +VI +C++V+ + SWGPLGWL+PSE FPLE R+ G ++ V N+ FT
Sbjct: 372 VTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNMFFT 431
Query: 438 ALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIY-LLFENHWFWK 496
+IAQAFL+ LC +K GIF F G +V+M F FF+PETK V I+++ +++ HW+WK
Sbjct: 432 FVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLHWYWK 491
Query: 497 RIVKEDNGKFVE 508
R + E++ VE
Sbjct: 492 RFMLEEDEHDVE 503
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.5415 | 0.9745 | 0.9521 | N/A | no |
| Q8GW61 | STP14_ARATH | No assigned EC number | 0.7684 | 0.9804 | 0.9940 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3208 | 0.8199 | 0.9168 | yes | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.606 | 0.9726 | 0.9521 | N/A | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3275 | 0.8199 | 0.9168 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5420 | 0.9471 | 0.9490 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 511 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-114 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-96 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-49 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-10 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 6e-10 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 8e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-05 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 5e-05 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 9e-05 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-04 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 4e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 0.002 | |
| PRK10473 | 392 | PRK10473, PRK10473, multidrug efflux system protei | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 345 bits (887), Expect = e-114
Identities = 168/464 (36%), Positives = 249/464 (53%), Gaps = 20/464 (4%)
Query: 30 CMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFT 89
+VAA+GG LFGYD GV G ++ F K F C + L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTS---------IGACAASTVLSGLIV 52
Query: 90 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLG 147
S L+ + A + GR+ S+++G+V F IGA+L A ML++GR+ +G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-PWGWRLS 206
+G+G + VP+Y+SE+AP K+RGA+ L+QL GILVA +I G K GWR+
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 207 LGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNA 266
LGL VPA L+ +G LFLPE+P LV +GKL+EAR VL K+RG ++VD E + D+
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 267 ARAIKNPFRN-LFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALY 325
+ + LF+ K Q ++ + + FQQLTG+N+I +Y+P IF++LG
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--L 290
Query: 326 SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385
++I G+ + I++ VD+FGRR L M I +++ + L KG
Sbjct: 291 VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK-----SKG 345
Query: 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFL 445
GI ++ I LF+ + WGP+ W++ SELFPL +R ++ N L LI F
Sbjct: 346 AGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFP 405
Query: 446 AALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLF 489
+ +FLVF GL+V+ F++FF+PETK +EEI LF
Sbjct: 406 IITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 300 bits (769), Expect = 2e-96
Identities = 161/480 (33%), Positives = 251/480 (52%), Gaps = 31/480 (6%)
Query: 20 YRITSYFLIA-CMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYC 78
T + + ++AA+GG +FGYD GV GG ++ F +F + L
Sbjct: 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWG---- 74
Query: 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC---AVH 135
L S G + A +++ GR+ S+++ ++ F IGAIL A+
Sbjct: 75 --------LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS 126
Query: 136 ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195
+ ML++GR+ LG+G+G + VP+YLSE+AP +RGA+ L+QL GILVA G
Sbjct: 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186
Query: 196 EKIHPW--GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANV 253
GWR+ LGL +PA L+F+G FLPE+P LV +G+++EARK L ++RGT+
Sbjct: 187 -VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGE 245
Query: 254 DAEFSDLIDASNAARAIKNPFRNL-------FKKKNRPQLVIGALGIPAFQQLTGMNSIL 306
D E D ++ + R+I+ ++ R +L +G + + FQQ TG+N+I+
Sbjct: 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVV-LQWFQQFTGINAIM 304
Query: 307 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366
+Y+P IF++ G + A S+I G +++ VD+FGRR L M I +
Sbjct: 305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364
Query: 367 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQ 426
++ I L K G ++ I LF+ + WGP+ W++ SE+FPL +R G
Sbjct: 365 VLGI---LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421
Query: 427 SVVVCNNLLFTALIAQAFLAALCHLKFG-IFLVFGGLVVIMSAFIYFFLPETKQVPIEEI 485
S+ V N L ++ F L + G +F+ FGGL V+ F+YFFLPETK +EEI
Sbjct: 422 SIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 7e-49
Identities = 133/510 (26%), Positives = 226/510 (44%), Gaps = 72/510 (14%)
Query: 13 KRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGV-SGGVTSMDDFLKEFFPKVYRRKQAH 71
+ Y + IT +VA +GG LFGYD V SG V S++ P+ +
Sbjct: 4 QYNSSYIFSIT-------LVATLGGLLFGYDTAVISGTVESLNTVFVA--PQ-------N 47
Query: 72 LTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA 131
L+E+ N +L +S ++ Y + GRR S+ + +V FFI A+ +A
Sbjct: 48 LSES----AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSA 103
Query: 132 C------------AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
++ ++ RI G+G+G + P+Y++E+APA IRG + Q
Sbjct: 104 WPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF 163
Query: 180 TTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE 233
G LV +NY + ++ GWR +PA L + F+PETP L+
Sbjct: 164 AIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMS 223
Query: 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGI 293
+GK ++A +L K+ G ++ + + R K L+ G I
Sbjct: 224 RGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGR-----------KTGGKLLMFGVGVI 272
Query: 294 ------PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDK 347
FQQ G+N +L+YAP IF++LG + AL ++I G+ ++++ VDK
Sbjct: 273 VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK 332
Query: 348 FGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGP 407
FGR+ + M I M + + GI ++ + +V A+ SWGP
Sbjct: 333 FGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGP 383
Query: 408 LGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAF------LAALCHLKFGIFLVFGG 461
+ W++ SE+FP +R ++ V + ++ F + H G G
Sbjct: 384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 443
Query: 462 LVVIMSA-FIYFFLPETKQVPIEEIYLLFE 490
+ +++A F++ F+PETK +EE+ L+E
Sbjct: 444 CMGVLAALFMWKFVPETKGKTLEEMEALWE 473
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 101/427 (23%), Positives = 178/427 (41%), Gaps = 54/427 (12%)
Query: 73 TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 132
TE D D + L S + L+ +F Y++ GR+ +++ ++ + +L A
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176
Query: 133 AVHISMLLLGRIFLGMGI-GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191
+ + ++ L+ R+ +GMGI G QAV L E P K R V L Q+ LG+++ L+
Sbjct: 177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235
Query: 192 NYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGT- 250
Y WR ++P L F+ F+PE+P L+ QG+++EA K+L+++
Sbjct: 236 AYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKIN 290
Query: 251 -ANVDAEFSDLIDASNAARAIKNPF--RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307
+ AE L + + + K R + + + +
Sbjct: 291 GKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT-------TAFSY 343
Query: 308 YAPVIFQSLGFGSGAALY-SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366
Y V+ G+ +Y I+G+ A LI++ +D+ GRR T ++
Sbjct: 344 YGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLL 394
Query: 367 IVAITLALEFGEGKPLPKGIGIFLVIVICL--------FVLAYGRSWGPLGWLVPSELFP 418
L L F +P + + L F + Y L +EL+P
Sbjct: 395 AGVALLLLLF-----VPVDLYFLRTALAVLGKFGITSAFQMVY---------LYTAELYP 440
Query: 419 LEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 477
+R+ G V VC+ + ++I+ + F ++FGGL ++ FLPET
Sbjct: 441 TVVRNLG--VGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT-LFLPET 497
Query: 478 KQVPIEE 484
K VP+ E
Sbjct: 498 KGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISML 139
L S+ + + A Y++ GRR +++G + F +G++L A A + +L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 140 LLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH 199
L+GR LG+G G A ++E P K RG LF LG L+ L+
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL--AE 148
Query: 200 PWGWRLSLGLATVPATLMFVGGLFLP 225
GWR + + L+ + LFL
Sbjct: 149 SLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 69/347 (19%), Positives = 124/347 (35%), Gaps = 46/347 (13%)
Query: 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGR 143
+ L ++ ++ A ++ GRR +++G + F +G +L A + +LL+ R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 144 IFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGW 203
+ G+G G A +++ P + RG L LG + L+ G +GW
Sbjct: 93 VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL--GGLLASLFGW 150
Query: 204 RLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 262
R + + + A L V L LP P +EA L
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV----------------- 193
Query: 263 ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGA 322
P L + L++ L ++L Y P+ + LG +
Sbjct: 194 ----------PAWKLLLRDPVLWLLLALLLFGF-----AFFALLTYLPLYQEVLGLSALL 238
Query: 323 ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382
A + G+ I L+ D+ GRR L A +I+ + +A+ E
Sbjct: 239 AGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE------- 291
Query: 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV 429
++L++ + L G + L + S+L P E R +
Sbjct: 292 ---SSLWLLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLY 334
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 81/362 (22%), Positives = 130/362 (35%), Gaps = 80/362 (22%)
Query: 99 STFGASYVTR------------SRGRRASIMV-----GSVSFFIGAILNACAVHIS---M 138
+TF A ++ R GR+ ++++ G + IG + + + I +
Sbjct: 39 ATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL 98
Query: 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY----- 193
LLL R+ G +G LYL+E AP RG Q+ +G+L+A L
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 194 -GTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTAN 252
G + + WGWR+ ++ V + L ETP Q K + R
Sbjct: 159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRG---------- 208
Query: 253 VDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312
P K +P L+ L I + FY
Sbjct: 209 --------------------PIAETLTKHRKPFLLGLGLVI--------ATTTTFYLITT 240
Query: 313 F------QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366
+ Q+LG + +AL +++ I I +S A D+ GRR + + V
Sbjct: 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300
Query: 367 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQ 426
+ + L L G ++ L G GP+G +P ELFP E+R G
Sbjct: 301 PLLMAL---------LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGA 350
Query: 427 SV 428
S+
Sbjct: 351 SL 352
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 63/327 (19%), Positives = 114/327 (34%), Gaps = 33/327 (10%)
Query: 111 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 170
GRR ++ + F + +L A A +++ LL+ R G+G+G + +SE AP + R
Sbjct: 80 GRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139
Query: 171 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV-PATLMFVGGLFLPETPN 229
G L +G V + I +GWR + + P L+ + FLPE+ +
Sbjct: 140 GTAVGLMFCGYPIGAAVGGFL--AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197
Query: 230 SLVEQGKLDEARKVLE-KVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVI 288
LV + R V + A + + R+ F+ LF+ K
Sbjct: 198 FLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRS---VFKALFQGKT------ 248
Query: 289 GALGIPAFQQLTGMNSILFYA-----PVIFQSLGFGSGAALYSSVITGIALCIAALISMA 343
A L M + Y P + LGF A + I ++I
Sbjct: 249 -ARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307
Query: 344 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGR 403
D+ G R ++ ++ + + P L+++ +
Sbjct: 308 LADRLGPRVT-------ALLLLLGAVFAVLVGSTLFSP------TLLLLLGAIAGFFVNG 354
Query: 404 SWGPLGWLVPSELFPLEMRSAGQSVVV 430
L L+ +P +R+ G +
Sbjct: 355 GQSGLYALMA-LFYPTAIRATGVGWAI 380
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 14/187 (7%)
Query: 290 ALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF 348
L + F G +L Y P+ Q LG + A + G+ + AL+ D+
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 349 GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPL 408
GRR L G + +++ L++ + L G P
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSL------------ALLLVALLLLGFGLG-FAFPA 285
Query: 409 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 468
+ SEL P E R + L AL L +G + + +++A
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345
Query: 469 FIYFFLP 475
+ LP
Sbjct: 346 LLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 86/393 (21%), Positives = 144/393 (36%), Gaps = 65/393 (16%)
Query: 143 RIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI----------- 191
R +LG+GIG + SE A K RGA+ GIL ++
Sbjct: 122 RFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHS 181
Query: 192 -NYGTEKIHPWG---------WRLSLGLATVPATLMFVGGLFLPETP--NSLVEQGKLDE 239
++ G WR+ +G VPA L L +PETP + V + +++
Sbjct: 182 LEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK-DVEQ 240
Query: 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK--KNRPQLVIGALGIPAFQ 297
A + V ++AE ++ AS A K + + F K R + F
Sbjct: 241 AASDMSAV-LQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFL 299
Query: 298 QLTGMNSILFYAPVIFQSLGFGSGAA-------LYSSVI--TGIALCIAA---LISMAFV 345
+ VI ++G+ AA LY + + IAL +++ V
Sbjct: 300 LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLV 359
Query: 346 DKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSW 405
D GR+ L + + ++ L G + V+ F +G +
Sbjct: 360 DIIGRKPIQLMGFFILTVLFFVLGFAY-------NHLSTH-GFLAIYVLAQFFANFGPN- 410
Query: 406 GPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ-AFLAALCH------LKFGIFLV 458
++VP E+FP RS + + A+I Q FL H GI++
Sbjct: 411 -ATTFIVPGEVFPTRYRSTAHGISAASGKA-GAIIGQFGFLYLAQHGDPTKGYPTGIWM- 467
Query: 459 FGGLVVIMSAFIY------FFLPETKQVPIEEI 485
G ++ I + F++ +PETK +EE+
Sbjct: 468 -GHVLEIFALFMFLGILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 111 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 170
GR+ ++VG F + + A + +I++L++ R G G F A ++++ P + R
Sbjct: 26 GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85
Query: 171 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPET 227
G L LG L+ + G GWR + A F+ F LPET
Sbjct: 86 GVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 74 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG-SVSFFIGAILNAC 132
E D C D+ + +Y +V F + GR+ +++ SV+ F A ++
Sbjct: 194 EKDLCIPDSGK-GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFF-AFFSSF 251
Query: 133 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192
L R+ G GIG V Y +E + RG + +G + A +
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 193 YGTEKIHPWGWRLSLGLA-------------TVPATLMFVGGLFLPETPNSLVEQGKLDE 239
+ I +GW +G A P F+PE+P +E GK DE
Sbjct: 312 WAI--IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE 369
Query: 240 ARKVLEKVRGT 250
A +L+ + T
Sbjct: 370 AWMILKLIHDT 380
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 80/355 (22%)
Query: 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIG--FGN 154
+ GR+ S+++ G+++ AC +LLL R+F G+ +G +G
Sbjct: 85 RIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT 144
Query: 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLG-----ILVANLINY--GTEKIHPWGWRLSL 207
A Y+SE+A +G FQ T +G +LV ++ ++ WGWR+
Sbjct: 145 SAT--YMSEVAVEGRKGFYAS-FQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPF 201
Query: 208 GLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA 267
L V A V L+L + +LDE E L +A +
Sbjct: 202 ALGAVLA----VVALWL---------RRQLDETS------------QQETRALKEAGS-- 234
Query: 268 RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSS 327
+ L++ + +V+G T S+ FY + + A ++++
Sbjct: 235 ------LKGLWRNRRAFIMVLG---------FTAAGSLCFYTFTTYMQKYLVNTAGMHAN 279
Query: 328 VITGI---ALCIAALISM---AFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 381
V +GI AL + LI A DK GRR L G+ ++ V + L +
Sbjct: 280 VASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-------QN 332
Query: 382 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS--AGQSVVVCNNL 434
+ F +++ L ++++ S + ++ +E+FP ++R+ G S V N L
Sbjct: 333 VSSPYAAFGLVMCALLIVSFYTS---ISGILKAEMFPAQVRALGVGLSYAVANAL 384
|
Length = 432 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 68/346 (19%), Positives = 111/346 (32%), Gaps = 42/346 (12%)
Query: 111 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 170
GRR ++ V F G + A + + R+ +G+G+G + Y+ E P +R
Sbjct: 75 GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR 134
Query: 171 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230
+ L +G +VA + + GWR ++ +P +PE
Sbjct: 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA--- 191
Query: 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 290
E K A K L + + + I N L +
Sbjct: 192 --EDWKEKHAGKALVR-----------TMVDILYGGEHRIANIVMTLAAAMVQSAGKRWP 238
Query: 291 LGIPAFQQLTGMN-----SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFV 345
+ + N + LG V + I + +
Sbjct: 239 TFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLG 298
Query: 346 DKFGRR---AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYG 402
D GRR L AG +II + + +A+ G+G+F +L G
Sbjct: 299 DWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV---------LGLGLFF-----QQMLVQG 344
Query: 403 RSWGPLGWLVPSELFPLEMRSAGQSVV--VCNNLLFTALIAQAFLA 446
WG L + E FP + R+AG + N A I A LA
Sbjct: 345 -IWGILPKHL-GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLA 388
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 70/404 (17%), Positives = 129/404 (31%), Gaps = 38/404 (9%)
Query: 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM 138
S+ + +V F ++ G R ++ V V + + L A A
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84
Query: 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI 198
L + R+ LG + L ++ PA R +F LG ++ + +
Sbjct: 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI--L 142
Query: 199 HPWGWRLSLGLATVPATLM-FVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEF 257
+ W+ + + V + + F+P+ P + L E K + AE
Sbjct: 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ---KAKWLTEEEKYIVVGGL----LAEQ 195
Query: 258 SDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV-IFQSL 316
++ IK ++ ++ ALG G L + P + Q
Sbjct: 196 QGKGPSTPKKYQIKELLKD-------RRVWGLALGQFLVNIGLGF--FLTWFPTYLVQER 246
Query: 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF 376
G A + + + GI I ++ D RR L + I +V L
Sbjct: 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306
Query: 377 GEGKPLPKGIGIFLVIVICLFVLAY-GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNL- 434
+ L L + G G +GW + S+ P AG + + N+L
Sbjct: 307 NYVNI--------PYAALALVALGFFGLGAGAIGWALISDNAP--GNIAGLTGGLINSLG 356
Query: 435 ----LFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 474
+ ++ A A L+ + ++ A Y L
Sbjct: 357 NLGGIVGPIVIGAIAATTGSFAGA--LMVVAALALIGALSYLLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Query: 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV-GSVSFFIGAILNACAVHISM 138
L S G++ ++ GRR +++ G + +G +L A A +++
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI 198
LL+ + LG G+GF A+ SE+AP + RG + LF LG + L+ +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLL 325
Query: 199 HPWGWRLSLGLATVPATLMFVGGLFLP 225
G+ + A L + L LP
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 96 GLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155
GL + + R G S+ + + G ++ + + +L LG + G GI N
Sbjct: 61 GLFAPAAPR-LARRFGEERSLFLALLLIAAGILIRS-LGGLPLLFLGTLLAGAGIAVINV 118
Query: 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPAT 215
+P + P ++ G + L+ + G +A + + H GWR +LG + A
Sbjct: 119 LLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ-HSGGWRGALGFWALLAL 176
Query: 216 LMFVGGLFLPETPNSLVEQGKLDEARKV 243
L + L + KL RKV
Sbjct: 177 LALLIWLPQALREQAASIATKLVSVRKV 204
|
Length = 395 |
| >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 91 SLYFAGLVST--FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGM 148
S+Y AG+ + F RS GR+ + G+ F I ++L + A S+ L GR G+
Sbjct: 45 SVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103
Query: 149 GIGF 152
G G
Sbjct: 104 GAGC 107
|
Length = 392 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.98 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.98 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.87 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.83 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.82 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.78 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.75 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.73 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.71 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.71 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.68 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.67 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.6 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.5 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.5 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.49 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.48 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.47 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.44 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.42 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.42 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.42 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.41 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.41 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.4 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.39 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.37 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.37 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.35 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.35 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.32 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.31 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.31 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.31 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.31 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.31 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.31 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.3 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.3 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.29 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.29 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.28 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.26 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.26 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.25 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.25 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.24 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.24 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.23 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.22 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.22 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.21 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.21 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.21 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.21 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.21 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.2 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.19 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.18 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.17 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.17 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.17 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.17 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.15 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.14 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.14 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.14 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.14 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.13 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.12 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.12 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.12 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.11 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.11 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.1 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.07 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.06 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.05 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.05 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.04 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.04 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.03 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.03 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.02 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.02 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.01 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.99 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.96 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.94 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.92 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.9 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.9 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.89 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.87 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.86 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.86 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.85 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.84 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.84 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.81 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.77 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.77 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.77 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.77 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.76 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.73 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.73 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.73 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.67 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.64 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.6 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.58 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.52 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.51 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.49 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.47 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.4 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.38 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.37 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.36 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.32 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.32 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.29 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.29 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.26 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.17 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.15 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.07 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.0 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.92 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.9 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.85 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.81 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.78 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.73 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.64 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.58 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.52 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.51 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.34 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.11 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.05 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.04 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.0 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.94 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.89 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.87 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.87 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.49 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.33 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.18 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.12 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.81 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.16 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 93.48 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.47 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.01 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.95 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 92.19 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 91.45 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 90.06 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.18 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.33 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 87.51 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 86.15 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 84.09 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 82.1 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.84 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=356.08 Aligned_cols=462 Identities=27% Similarity=0.502 Sum_probs=389.7
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhh-ccccccccccccCCchHHHHHHHHHHHHHHH
Q 010433 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRR-KQAHLTETDYCKYDNQVLTLFTSSLYFAGLV 98 (511)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i 98 (511)
++++++....+.+++++.+-.||+.+.++.. .+..++|..+...+ .....+++ .-+...+.+.+++.+|.++
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~----~~~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDS----TLDLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChH----HHHHHHHHHHHHHHHHHHH
Confidence 4567778888888889999999999998876 45666665333322 11111111 1233467888999999999
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHH
Q 010433 99 STFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQ 175 (511)
Q Consensus 99 ~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 175 (511)
|+++.|+++||+|||..+.++.++..++.++..++ +++..++++|++.|+..|........++.|..|.+.||....
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 99999999999999999999999888888877665 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHh-cCCHHHHHHHHHHHhCCCcch
Q 010433 176 LFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE-QGKLDEARKVLEKVRGTANVD 254 (511)
Q Consensus 176 ~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~-~~~~~~~~~~~~~~~~~~~~~ 254 (511)
..+.+..+|.+++..++.--..-+...|++.+.+..+++++.++...++||||||+.. +++.++|++.++.++++++.+
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~ 235 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVE 235 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcch
Confidence 9999999999999888654444444679999999999999999999999999999988 899999999999999998766
Q ss_pred HHHHHHHHHHHHH---HhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHH
Q 010433 255 AEFSDLIDASNAA---RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITG 331 (511)
Q Consensus 255 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 331 (511)
++.++..++.+++ ++++.+++++++++..++-....+.+....++.+.+...+|...++++.|++..++.+.....+
T Consensus 236 ~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g 315 (485)
T KOG0569|consen 236 AEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG 315 (485)
T ss_pred hHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6655544433332 2256678999999877776655555788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccce
Q 010433 332 IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWL 411 (511)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (511)
+...+..+++.++.||.|||++++.+..++.+..+++........... ....+..+...+.+...++.+.+|+++.
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~----~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG----SWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 999999999999999999999999999998888887777654432111 1233455677888889999999999999
Q ss_pred eecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHhcc
Q 010433 412 VPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFEN 491 (511)
Q Consensus 412 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (511)
+.+|++|++.|+.++++...+.++..++....+..+.+..|...++.+.+.+++..+.+++++||||+|+..|+.++.++
T Consensus 392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999998888776
Q ss_pred C
Q 010433 492 H 492 (511)
Q Consensus 492 ~ 492 (511)
+
T Consensus 472 ~ 472 (485)
T KOG0569|consen 472 R 472 (485)
T ss_pred C
Confidence 6
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=340.02 Aligned_cols=444 Identities=28% Similarity=0.522 Sum_probs=324.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHh
Q 010433 23 TSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFG 102 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 102 (511)
.+.....+.+++++.+.++||..++++. .|.+.++|.+.. .++++.+..+.+++.+++.++..+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~ig~~~~~~~ 74 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGAL 74 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHh--HHHHHHHhcccc----------cccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778899999999999887 678888874332 3344789999999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCC
Q 010433 103 ASYVTRSRGRRASIMVGSVSFFIGAILNACA------------VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 170 (511)
Q Consensus 103 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 170 (511)
+|+++||+|||++++.+.++.+++.++++++ +.++.++++|+++|++.|...+...++++|++|+++|
T Consensus 75 ~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r 154 (479)
T PRK10077 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIR 154 (479)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhh
Confidence 9999999999999999999999998888763 2357788999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcc------cCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHH
Q 010433 171 GAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVL 244 (511)
Q Consensus 171 ~~~~~~~~~~~~~G~~~g~~l~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~ 244 (511)
++++++.+.+..+|.++++.++..... ...++||+.|++.+++.++..+..+++||+|+|+..+++.+++++..
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 234 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHH
Confidence 999999999999999999887654431 23468999999988888777666778999999998888888877766
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHH
Q 010433 245 EKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAAL 324 (511)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 324 (511)
++.....+.+...++..+...++ +...+..+. ..............+.+..+++...++.|.+.++.|.+.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~ 309 (479)
T PRK10077 235 RKIMGNTLATQALQEIKHSLDHG---RKTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL 309 (479)
T ss_pred HHHcCChhHHHHHHHHHHHHHHh---hhhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH
Confidence 66554433222222221111100 101111111 0111111111123344445556667788999888999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 010433 325 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRS 404 (511)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (511)
......++..+++.++++++.||+|||+.+..+..++.++.+.+...... ...........+++..+++..
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 380 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMS 380 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc---------CcccHHHHHHHHHHHHHHhcc
Confidence 78888888999999999999999999999998888887777666543210 111122333444455555555
Q ss_pred cccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH------Hhcchh-hHHHHHHHHHHHHHHHHhccccC
Q 010433 405 WGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL------CHLKFG-IFLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 405 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
+.+..+.+++|.+|++.|++++|+.+...+++..+++.+++.+. +..++. .+.+.+..+++..++.+.+.+|+
T Consensus 381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence 66777788899999999999999999999999999988776554 344433 44455555555555666678899
Q ss_pred CCCCHHHHHHHhccC
Q 010433 478 KQVPIEEIYLLFENH 492 (511)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (511)
|+++.+|.++..++.
T Consensus 461 ~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 461 KGKTLEEMEALWEPE 475 (479)
T ss_pred CCCCHHHHHHHHhhc
Confidence 998888776665443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=350.79 Aligned_cols=424 Identities=17% Similarity=0.203 Sum_probs=322.3
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 010433 21 RITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVST 100 (511)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~ 100 (511)
...+++|.++++++++.+..+++...++.+ +|.+.+++ +++..+.+++.+++.++.++++
T Consensus 160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~ 219 (742)
T TIGR01299 160 GHGRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGA 219 (742)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 345778888888889999999999888776 78888887 8899999999999999999999
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHH
Q 010433 101 FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180 (511)
Q Consensus 101 ~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 180 (511)
+++|+++||+|||+++++++++.+++.++++++++++.++++|++.|++.++..+...+++.|++|+++|++.+++..++
T Consensus 220 li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~ 299 (742)
T TIGR01299 220 FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF 299 (742)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc-----------CCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhC
Q 010433 181 TCLGILVANLINYGTEKI-----------HPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRG 249 (511)
Q Consensus 181 ~~~G~~~g~~l~~~~~~~-----------~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 249 (511)
+.+|.++++.++..+... ...+||+.+++.++++++.++..+++||||+|+..+++.+++.+.+++++.
T Consensus 300 ~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~ 379 (742)
T TIGR01299 300 WMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHD 379 (742)
T ss_pred HHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999876544321 124799999999988887777788899999999999999999999999877
Q ss_pred CCcch----HH-H--HHHHHHHHHH-----H-hc------------------cCChHHhhccCCchhHHHHHHHHHHHhh
Q 010433 250 TANVD----AE-F--SDLIDASNAA-----R-AI------------------KNPFRNLFKKKNRPQLVIGALGIPAFQQ 298 (511)
Q Consensus 250 ~~~~~----~~-~--~~~~~~~~~~-----~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
.+... .+ . +..+...... + .. ..+++++++.+.++++++.. +.++..
T Consensus 380 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~--~~wf~~ 457 (742)
T TIGR01299 380 TNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLM--GVWFTL 457 (742)
T ss_pred CCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHH--HHHHHH
Confidence 65321 10 0 0011100000 0 00 01245566665555554444 467777
Q ss_pred hcchhhHHhcHHHHHHHc------------------------------------------CC-----C------------
Q 010433 299 LTGMNSILFYAPVIFQSL------------------------------------------GF-----G------------ 319 (511)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~------------------------------------------g~-----~------------ 319 (511)
..+++++..|+|.++++. |+ +
T Consensus 458 ~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (742)
T TIGR01299 458 SFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFD 537 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccccee
Confidence 788999999999875331 00 0
Q ss_pred --------------------------------------------------------ChhHHHHHHHHHHHHHHHHHHHHH
Q 010433 320 --------------------------------------------------------SGAALYSSVITGIALCIAALISMA 343 (511)
Q Consensus 320 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~ 343 (511)
.........+.+++.+++.+++++
T Consensus 538 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~ 617 (742)
T TIGR01299 538 DVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSAL 617 (742)
T ss_pred eccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234456677899999999999
Q ss_pred HHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchh
Q 010433 344 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS 423 (511)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 423 (511)
++||+|||+++..+.++.+++.+++.+.. . ....++..++.+++.+..+ +..+.+++|++|++.|+
T Consensus 618 L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------------s-~~~ll~~~~l~g~~~~~~~-~~~~a~~aEl~Pt~~Rg 683 (742)
T TIGR01299 618 LMDKIGRLRMLAGSMVLSCISCFFLSFGN------------S-ESAMIALLCLFGGLSIAAW-NALDVLTVELYPSDKRA 683 (742)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHc------------c-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHH
Confidence 99999999999888877777766655431 1 1222333334444333333 44567778999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCC
Q 010433 424 AGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVP 481 (511)
Q Consensus 424 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (511)
+++|+.+....+|++++|.+.+.+.+.. ...++++.+++.+++.++..++||++++.
T Consensus 684 ta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 684 TAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 9999999999999999999999887654 33444444444455555556779888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=348.30 Aligned_cols=441 Identities=18% Similarity=0.212 Sum_probs=311.5
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHH
Q 010433 18 YEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGL 97 (511)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~ 97 (511)
++.+..++++..+.++.++.+.++||...++.+ .|.+..+++. ++.+.++.+.+++.+.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ig~~ 70 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLV--TKMLGYVYYH-------------GKGPLPSSVSAAVNGSASIGTL 70 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcc-------------CcccchHHHHHHHHHHHHHHHH
Confidence 345677788888889999999999999998877 4555443210 0124567788999999999999
Q ss_pred HHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCc
Q 010433 98 VSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH------ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (511)
Q Consensus 98 i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 171 (511)
++++++|+++||+|||+++..+.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|+
T Consensus 71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg 150 (502)
T TIGR00887 71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG 150 (502)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999988865 789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc---------------------cCCccchHHHHHHHHHHHHHHHHhccccCChhH
Q 010433 172 AVNQLFQLTTCLGILVANLINYGTEK---------------------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230 (511)
Q Consensus 172 ~~~~~~~~~~~~G~~~g~~l~~~~~~---------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 230 (511)
+++++.+....+|.++++.++..... ...++||++|.+.++++++.++..+++||||+|
T Consensus 151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~ 230 (502)
T TIGR00887 151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY 230 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999988654321 112479999999988888877778889999999
Q ss_pred HHhcCCHH-HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCch---hHHHHHHHHHHHhhhcchhhHH
Q 010433 231 LVEQGKLD-EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRP---QLVIGALGIPAFQQLTGMNSIL 306 (511)
Q Consensus 231 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
+..+++.+ ++++.+.+....+..++ .++..+.+++++..+.+++++++++..+ +..+... ...+.....++...
T Consensus 231 l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~ 308 (502)
T TIGR00887 231 TADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTA-GSWFLLDIAFYGVN 308 (502)
T ss_pred HHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHccc
Confidence 98877764 46666665543221111 0110000001111123566776543222 2222222 22333333455667
Q ss_pred hcHHHHHHHcCCCChhHHH------------HHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHh
Q 010433 307 FYAPVIFQSLGFGSGAALY------------SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 374 (511)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (511)
.+.|.++++.|++....+. ......++.+++.++++++.||+|||+.+..+..++.+++.++......
T Consensus 309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~ 388 (502)
T TIGR00887 309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH 388 (502)
T ss_pred cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7789999888886543211 2334445677788899999999999998887776666665555443210
Q ss_pred hcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q 010433 375 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL--- 451 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 451 (511)
.... ......++....++.+..++.+.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+..
T Consensus 389 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (502)
T TIGR00887 389 ---------LSTH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT 458 (502)
T ss_pred ---------cchh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccc
Confidence 0001 111122222222344555667777899999999999999999999999999999999988742
Q ss_pred -------ch-hhHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Q 010433 452 -------KF-GIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIY 486 (511)
Q Consensus 452 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (511)
+. ..++++++++++. .+.++++||+++++.+|++
T Consensus 459 ~~~~~~~~~~~~~~i~~~~~~~~-~i~~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 459 KGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEELS 500 (502)
T ss_pred ccccccccchHHHHHHHHHHHHH-HHHheEeccCCCCCHHhhh
Confidence 22 3445555554444 4455678999998877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=327.97 Aligned_cols=456 Identities=38% Similarity=0.669 Sum_probs=365.5
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhc--cccccccccchhhHhhhhhhhhhhccccccccccccCCc--hHHHHHHHHHHHH
Q 010433 20 YRITSYFLIACMVAAMGGSLFGYD--LGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDN--QVLTLFTSSLYFA 95 (511)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~ 95 (511)
.+........+....++.+..+++ .+..+++ ....+++.... +...+. .+.+|+.++..++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~---~~~~~~~~~~~------------~~~~~~~~~~~s~~~s~~~lg 101 (513)
T KOG0254|consen 37 TMISPFVILLALVAALGGLLFGYDGDIGGISGA---LDFLQRFASLY------------DLSTGEYSVRQGLLTSILNLG 101 (513)
T ss_pred ccCceehHHHHHHHHHHHHHhCcccccccchhh---HHHHHhccccc------------ccccchhHHHHHHHHHHHHHH
Confidence 344556778888888999999998 3343333 23333321110 001122 5679999999999
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHH
Q 010433 96 GLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQ 175 (511)
Q Consensus 96 ~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 175 (511)
..++++++|+++|++|||+.++++.+++.++++++++++|+++++++|+++|+|.|......+.+++|..|++.||...+
T Consensus 102 a~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~ 181 (513)
T KOG0254|consen 102 ALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVS 181 (513)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCC--Ccc
Q 010433 176 LFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGT--ANV 253 (511)
Q Consensus 176 ~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~--~~~ 253 (511)
..+....+|..++..++....... ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++. .+.
T Consensus 182 ~~~l~~~~Gi~~~~~~~~~~~~~~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~ 260 (513)
T KOG0254|consen 182 LYQLFITIGILLGYCINYGTSKVY-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDV 260 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcch
Confidence 999999999999977765554432 58999999999999988777888999999999999999999999999983 344
Q ss_pred hHHHHHHHHHHHHHH---hccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHH
Q 010433 254 DAEFSDLIDASNAAR---AIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVIT 330 (511)
Q Consensus 254 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 330 (511)
+.+.++.+.....+. ..+..+.+++++...++..+... +..+++..+++...+|.+.+++..|.+... .......
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~ 338 (513)
T KOG0254|consen 261 EVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLL-LQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIIL 338 (513)
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHH-HHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHH
Confidence 444444442211111 11223667777555555555555 889999999999999999999998877554 5666777
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccc
Q 010433 331 GIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGW 410 (511)
Q Consensus 331 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (511)
++...++.+++..+.||+|||++++.+...+.+++++++........+.. ......+..+...+++...+..++.++++
T Consensus 339 ~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w 417 (513)
T KOG0254|consen 339 GVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPW 417 (513)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccchh
Confidence 88888888899999999999999999999999999888877654322210 12345677788888888899999999999
Q ss_pred eeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHH-HHHhccccCCCCCHHHHHHH
Q 010433 411 LVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSA-FIYFFLPETKQVPIEEIYLL 488 (511)
Q Consensus 411 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 488 (511)
.+.+|.+|.+.|+.+.++....+++..++....+....+..+ ...+..+.+++.+... +.++++||+|+++.+|+++.
T Consensus 418 ~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~ 497 (513)
T KOG0254|consen 418 VIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINEL 497 (513)
T ss_pred hhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHH
Confidence 999999999999999999999999999988888877777765 6667777777777777 78889999999999999887
Q ss_pred hccCcc
Q 010433 489 FENHWF 494 (511)
Q Consensus 489 ~~~~~~ 494 (511)
.++...
T Consensus 498 ~~~~~~ 503 (513)
T KOG0254|consen 498 FEEGIK 503 (513)
T ss_pred HHcCCc
Confidence 665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=322.75 Aligned_cols=448 Identities=35% Similarity=0.647 Sum_probs=321.4
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHH
Q 010433 19 EYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLV 98 (511)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i 98 (511)
..+.+|+.+..++++.++.++.+++...++.. +|.+..++ +.+++.+-+.+..+.+++.+++.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 86 (481)
T TIGR00879 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGA--LALPAFEF----------KFTSANSDSYSSSLWGLVVSIFLVGGFI 86 (481)
T ss_pred CCcccHHHHHHHHHHHHHHHhcccccchhhhh--hhcHHHHH----------hcCCcccCCCChhHHHHHHHHHHHHHHH
Confidence 34455666677777778888999999988777 56666665 1111222246799999999999999999
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHH
Q 010433 99 STFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV---HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQ 175 (511)
Q Consensus 99 ~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 175 (511)
+++++|+++||+|||+++..+.+++.++.+++.+.. +++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 87 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 166 (481)
T TIGR00879 87 GALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTS 166 (481)
T ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhh
Confidence 999999999999999999999999999999986653 45689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcch
Q 010433 176 LFQLTTCLGILVANLIN-YGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVD 254 (511)
Q Consensus 176 ~~~~~~~~G~~~g~~l~-~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (511)
+.+.+..+|.+++++++ .........+||+.|++.++..++..+..+++||+|++...+++.+++++...+....++.+
T Consensus 167 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR00879 167 LYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED 246 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc
Confidence 99999999999999996 11333344689999999777776666667788999998877777777666555544333222
Q ss_pred HHHHHHHH----HH-HHHHhccCChHHhhccCC--chhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHH
Q 010433 255 AEFSDLID----AS-NAARAIKNPFRNLFKKKN--RPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSS 327 (511)
Q Consensus 255 ~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 327 (511)
.+..+..+ .. .+.+..+..+.+.++... .++...... +..+..........++.|.+.++.|++..+.+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 325 (481)
T TIGR00879 247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVV-LQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVS 325 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHH-HHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHH
Confidence 21111000 00 011111222334443221 223333222 44555555556677888999899999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q 010433 328 VITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGP 407 (511)
Q Consensus 328 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (511)
....++.+++.++.+++.||++||+.+..+..+..++++.+.......... ..+...+..+....++..+++....+
T Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (481)
T TIGR00879 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG---SSKSSGNVAIVFILLFIAFFAMGWGP 402 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC---cccchhHHHHHHHHHHHHHHHccccC
Confidence 999999999999999999999999988887766666655555322111000 00011233344444555556666667
Q ss_pred ccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHhccccCCCCCH
Q 010433 408 LGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIF-LVFGGLVVIMSAFIYFFLPETKQVPI 482 (511)
Q Consensus 408 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (511)
....+..|.+|++.|+++.|+.+...++++++++.+.+.+.++.++... ++.++++++..++.+++.+|+++++.
T Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 403 VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 7777778999999999999999999999999999999999888776544 44444445555555566677666543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=319.68 Aligned_cols=399 Identities=16% Similarity=0.234 Sum_probs=273.4
Q ss_pred HHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCc--hHHHH--HHHHHHHHHHHHHHhhh
Q 010433 29 ACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDN--QVLTL--FTSSLYFAGLVSTFGAS 104 (511)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~--~~~g~--~~s~~~l~~~i~~~~~g 104 (511)
....+.++.++++||..+++.. .|.+.++|+|+. ++ ...+. ..++.++++.+++++.|
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~--~~~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~ig~~~~G 78 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFV--AYALGKVFFPGA----------------DPSVQMIAALATFSVPFLIRPLGGLFFG 78 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCCC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455578999999999999877 688888886432 11 11222 25788899999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHH
Q 010433 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISM--------LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQL 176 (511)
Q Consensus 105 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 176 (511)
+++||+|||+++..++++++++++++++++|++. ++++|+++|++.|..++...++++|++|+++|+++.++
T Consensus 79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~ 158 (490)
T PRK10642 79 MLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSW 158 (490)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHH
Confidence 9999999999999999999999999999999875 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc------cCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCC
Q 010433 177 FQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGT 250 (511)
Q Consensus 177 ~~~~~~~G~~~g~~l~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~ 250 (511)
...+..+|.++++.+...... ...+|||+.|++.++++++.+++...+||+|+|...+++.++..+
T Consensus 159 ~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-------- 230 (490)
T PRK10642 159 LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-------- 230 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc--------
Confidence 999998998888866433211 234799999999887766655566678999987533222111000
Q ss_pred CcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHH
Q 010433 251 ANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVI 329 (511)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 329 (511)
+...+..+.++++++++ ..+... ... ...+.....++.+..|.|.+++ .+|++..+.......
T Consensus 231 -------------~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 294 (490)
T PRK10642 231 -------------EGLQDGPKVSFKEIATK-HWRSLL-TCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIA 294 (490)
T ss_pred -------------ccccccccCCHHHHHHH-hHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00000113345566553 222222 222 2223344556677788999885 479988887877778
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccc
Q 010433 330 TGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLG 409 (511)
Q Consensus 330 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (511)
..++.+++.++.|+++||+|||+.+..+.....+....+..... ............+.+.+.+...+..
T Consensus 295 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~g~~- 363 (490)
T PRK10642 295 IMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN----------SNVIGLIFAGLLMLAVILNCFTGVM- 363 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88889999999999999999999877665543332222111110 0111222222222333222222222
Q ss_pred ceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhccccCCCC
Q 010433 410 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFIYFFLPETKQV 480 (511)
Q Consensus 410 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (511)
..+..|.+|++.|+++.|+.+.....++.++|.+.+.+.+..+ +.....+..+..++.++..+++||++++
T Consensus 364 ~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 364 ASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANR 435 (490)
T ss_pred HHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 3444689999999999998777778888899999998877654 3333333333444444455566877654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=288.93 Aligned_cols=406 Identities=15% Similarity=0.124 Sum_probs=296.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHH
Q 010433 15 AHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYF 94 (511)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l 94 (511)
+++.++.++++++.+...+.+++...++..-.++.+ .|.+.++. ++|.+|.|++.+++++
T Consensus 16 ~~~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a--~p~l~e~~------------------~lsk~~lG~i~s~f~i 75 (448)
T COG2271 16 ASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLA--MPALIEDG------------------GLSKTQLGILGSAFSI 75 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--cHHHHHhc------------------CCCHHHHHHHHHHHHH
Confidence 334466677888899999999999999999888877 78998887 7899999999999999
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhH
Q 010433 95 AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (511)
Q Consensus 95 ~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 174 (511)
.|.++..+.|.++||.+.|+.+..++++.++.+++++++++.+.+.++-++.|..+|..+|++...++.|+|++|||+..
T Consensus 76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~ 155 (448)
T COG2271 76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWW 155 (448)
T ss_pred HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcc
Q 010433 175 QLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANV 253 (511)
Q Consensus 175 ~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (511)
++++++.++|..+.|++........+.+||..|++.++++++..+. ++..+|+|+..-. .+.|+.
T Consensus 156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~~------------- 221 (448)
T COG2271 156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEEY------------- 221 (448)
T ss_pred EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHHh-------------
Confidence 9999999999999999862233333348999999999999887555 5668888852110 111111
Q ss_pred hHHHHHHHHH-HHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHH
Q 010433 254 DAEFSDLIDA-SNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITG 331 (511)
Q Consensus 254 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 331 (511)
.++..+. +++++++..+.++++.....+...++.+++........-+++..|.|.|+.+ .|++...+....+.+-
T Consensus 222 ---~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE 298 (448)
T COG2271 222 ---RGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFE 298 (448)
T ss_pred ---hcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1111111 1111111133344333222222233333367777777889999999999955 8999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc--CChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccc--
Q 010433 332 IALCIAALISMAFVDKF--GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGP-- 407 (511)
Q Consensus 332 ~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 407 (511)
.++++|.+++|+++||+ |||....+...+.....++.... .+..+.++..++....++. .+.|
T Consensus 299 ~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~----------~~~~~~~l~~~~l~~iGf~---IyGPqm 365 (448)
T COG2271 299 VAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL----------APNGSYLLDAILLFIIGFL---IYGPQM 365 (448)
T ss_pred HHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc----------CCCccHHHHHHHHHHHHHH---HhhHHH
Confidence 99999999999999997 56655443332222222222111 1112222222222222222 2222
Q ss_pred ccceeecccCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q 010433 408 LGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFI 470 (511)
Q Consensus 408 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (511)
+.-..+.|..|++..|++.|+...++++ |...+....+.+.|..||...+++..++.+++.++
T Consensus 366 LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 366 LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 2233446999999999999999999999 88888888898888877665554444444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=277.11 Aligned_cols=373 Identities=17% Similarity=0.180 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 010433 27 LIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYV 106 (511)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l 106 (511)
+...+...++.|..+.+..+.... +|++.+|| |+|..+.|++.|+|.+++.++.++...+
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gL--Lp~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l~~l 71 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGL--LPPIAADL------------------GVSEGAAGQLITAYALGVALGAPLLALL 71 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhc--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567778888787777655 89999999 9999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHH
Q 010433 107 TRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL 186 (511)
Q Consensus 107 ~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 186 (511)
.||+.||++++..+.++.++++++++++||+.++++|++.|++.|..++...++..+..|+++|++++++...+.+++.+
T Consensus 72 t~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v 151 (394)
T COG2814 72 TGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATV 151 (394)
T ss_pred HcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hcccc-CChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 010433 187 VANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLP-ETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDAS 264 (511)
Q Consensus 187 ~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~-esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (511)
+|.+++.++. +.+|||..|++.+.++++..+. +..+| .+++ ++
T Consensus 152 ~GvPLGt~ig--~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~-----~~---------------------------- 196 (394)
T COG2814 152 LGVPLGTFLG--QLFGWRATFLAIAVLALLALLLLWKLLPPSEIS-----GS---------------------------- 196 (394)
T ss_pred HhccHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCC-----CC----------------------------
Confidence 9999965554 4469999999999999988665 66688 1110 00
Q ss_pred HHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhc-HHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 010433 265 NAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY-APVIFQSLGFGSGAALYSSVITGIALCIAALISMA 343 (511)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 343 (511)
.+....+..+.+|++..+.... ..+..+.+.+...+| -|.+.+..|++....++....++++.++|..++|+
T Consensus 197 --~~~~~~~~~~~l~~p~v~~~l~-----~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr 269 (394)
T COG2814 197 --LPGPLRTLLRLLRRPGVLLGLL-----ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR 269 (394)
T ss_pred --CCcchhHHHHHhcCchHHHHHH-----HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000111334555555444332 333334444444444 45544568999999999999999999999999999
Q ss_pred HHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchh
Q 010433 344 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS 423 (511)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 423 (511)
+.|| +.|+.+.....+..+.++.+.+.. ...+..+....+.++......... ....++. -++.+.
T Consensus 270 l~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~~-~p~~~~ 334 (394)
T COG2814 270 LADR-GPRRALIAALLLLALALLALTFTG------------ASPALALALLFLWGFAFSPALQGL-QTRLARL-APDAAD 334 (394)
T ss_pred hccc-cchhHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHhhhhhhHH-HHHhccc-CCCchH
Confidence 9999 888877777676666666655542 223444444444333333222222 2222342 247799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhcccc
Q 010433 424 AGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476 (511)
Q Consensus 424 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (511)
.+.++.....++|..++..+.|.+.++.++......+++..+.+..+.+...+
T Consensus 335 ~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 335 LAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988877777777777666666555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=307.97 Aligned_cols=379 Identities=21% Similarity=0.341 Sum_probs=275.7
Q ss_pred ccCC---chHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhh
Q 010433 78 CKYD---NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 78 ~~~s---~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
+|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.+...
T Consensus 119 ~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 198 (505)
T TIGR00898 119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198 (505)
T ss_pred ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchH
Confidence 3777 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhc
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~ 234 (511)
+...+++.|++|+++|+++.++...+..+|.++++.+++... +||+.|++.+++.++..+..+++||+|+|+..+
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~ 273 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQ 273 (505)
T ss_pred HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHC
Confidence 999999999999999999999999999999999999865543 499999999998888777777899999999999
Q ss_pred CCHHHHHHHHHHHhCCCcchHHHH--HHH-HHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHH
Q 010433 235 GKLDEARKVLEKVRGTANVDAEFS--DLI-DASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 311 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
++.+++.+.+++..+.+......+ +.. ++....+..+.+.+++++++..+...+... ...+.....++. .+.
T Consensus 274 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~ 348 (505)
T TIGR00898 274 GRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLM-MLWFTTAFSYYG----LVL 348 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHH-HHHHHHHHHHHH----Hhc
Confidence 999998888777655443221111 111 111111112346778888776665554433 222222222222 222
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHH
Q 010433 312 IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 391 (511)
Q Consensus 312 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
+....+.+. .......++..+++.++.+++.||+|||+.+..+.++.+++.+++.... ....+...
T Consensus 349 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~ 414 (505)
T TIGR00898 349 DLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----------VDLYFLRT 414 (505)
T ss_pred cccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----------CCchHHHH
Confidence 233444442 3444556778889999999999999999998888777666665544431 11112223
Q ss_pred HHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Q 010433 392 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (511)
...++..++....+ +..+.+.+|.+|++.|++++|+.+....+++.++|.+.+ +.+......+.++++ +.+++.+..
T Consensus 415 ~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 491 (505)
T TIGR00898 415 ALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGG-LALLAGILT 491 (505)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHH-HHHHHHHHH
Confidence 33333333333233 344667789999999999999999999999999999988 443323334444444 444444555
Q ss_pred hccccCCCCCHH
Q 010433 472 FFLPETKQVPIE 483 (511)
Q Consensus 472 ~~~~~~~~~~~~ 483 (511)
++++|+++++.+
T Consensus 492 ~~lpet~~~~l~ 503 (505)
T TIGR00898 492 LFLPETKGVPLP 503 (505)
T ss_pred HcCcCCCCCCCC
Confidence 678888887654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=359.06 Aligned_cols=441 Identities=35% Similarity=0.659 Sum_probs=337.0
Q ss_pred HHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 010433 32 VAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 111 (511)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 111 (511)
++.++.+.+|||...++..........++..+. .+++.+.+..+.+++.++..+|..+|+++.|+++||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSS---------SESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhcccccc---------ccccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 345677999999999877643332223331111 01111225678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 010433 112 RRASIMVGSVSFFIGAILNACAV---HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVA 188 (511)
Q Consensus 112 rr~~l~~~~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 188 (511)
||+.+..+.++..+++++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCC-ccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 010433 189 NLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA 267 (511)
Q Consensus 189 ~~l~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (511)
..++........ .+||..+.+.++++++..+..+++||||+|+..++|.+|+++.+++.++.+..+.+.++..++.++.
T Consensus 155 ~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (451)
T PF00083_consen 155 SLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKES 234 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence 888654433222 4699999999999988777788899999999999999999999998766655444444444333333
Q ss_pred HhccCChHHhhccCC-chhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 268 RAIKNPFRNLFKKKN-RPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVD 346 (511)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 346 (511)
++.+.+++++++++. .++....+. +..+.+..+.+...++.+.++++.+.+.. ........+...++.+++.++.|
T Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 311 (451)
T PF00083_consen 235 QESKASWRDLFRNKKYRKRLLIALL-LQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLID 311 (451)
T ss_pred cccceeeeecccccccccccccccc-ccccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 333356777777755 333333333 45555566666777888888888777766 33344555677778888889999
Q ss_pred hcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHH
Q 010433 347 KFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQ 426 (511)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 426 (511)
|+|||+.+..+...+.++.+.+...... ... .+.......+....+....++.++.+..+.+..|.+|++.|+++.
T Consensus 312 ~~GRr~~~i~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~ 387 (451)
T PF00083_consen 312 RFGRRKLLIIGLLLMAICSLILGIIFFL--GVS--SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGI 387 (451)
T ss_pred cccccccccccccccccccccccccccc--ccc--cccccccccceeeeecccccccccccccccccccccccccccccc
Confidence 9999999888887777766666411100 000 001123334444445555666677888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Q 010433 427 SVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLL 488 (511)
Q Consensus 427 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (511)
|+....+++++++.+.+...+.+..+ ...+.++++++.+..++.+.++|||++++.+|++++
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999999999999999988887777 777788888888888888899999999999998875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=294.00 Aligned_cols=385 Identities=18% Similarity=0.234 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchH---HHHHHHHHHHHHHHHHH
Q 010433 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQV---LTLFTSSLYFAGLVSTF 101 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~---~g~~~s~~~l~~~i~~~ 101 (511)
+++.....++++.+++++|...++.. .|.+.++|+|. +.+..+ .+.+.+..+++..++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ig~~ 81 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFC--SLYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRPIGGW 81 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556678889999999998877 68888888543 223343 34444555566669999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchh
Q 010433 102 GASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAV 173 (511)
Q Consensus 102 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 173 (511)
++|+++||+|||+++..++++++++++++++++++. .++++|+++|++.|..++...++++|++|+++|+++
T Consensus 82 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 161 (432)
T PRK10406 82 LFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFY 161 (432)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHH
Confidence 999999999999999999999999999999988764 688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc------cCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHH
Q 010433 174 NQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKV 247 (511)
Q Consensus 174 ~~~~~~~~~~G~~~g~~l~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~ 247 (511)
.++.+.+...|.++++.+...... ...+|||++|++.++++++.......+||+|++.. +
T Consensus 162 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~-------- 227 (432)
T PRK10406 162 ASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------R-------- 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h--------
Confidence 999999988888888876433321 12469999999988888776655666788764210 0
Q ss_pred hCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHH
Q 010433 248 RGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYS 326 (511)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 326 (511)
+++++.+++++++++..+ .... ...+.....++.+..|.|.++++ +|++..+.+..
T Consensus 228 -------------------~~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~ 284 (432)
T PRK10406 228 -------------------ALKEAGSLKGLWRNRRAF---IMVL-GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGI 284 (432)
T ss_pred -------------------hhcccccHHHHHhhHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 000122455666543222 1111 12222234456677888988854 79998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccc
Q 010433 327 SVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWG 406 (511)
Q Consensus 327 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (511)
.....+...++.++.|+++||++||+.......+..+....+.... . . ....+..+....+.....+. ..
T Consensus 285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~------~-~~~~~~~~~~~~~~~~~~~~-~~ 354 (432)
T PRK10406 285 MTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--Q------N-VSSPYAAFGLVMCALLIVSF-YT 354 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--H------c-CCcHHHHHHHHHHHHHHHHH-HH
Confidence 8888888888899999999999999877655443332222111111 0 0 01112111111111111111 11
Q ss_pred cccceeecccCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhcc
Q 010433 407 PLGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 407 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
+....+.+|.+|++.|++++|+.+..++. .+...|.+.+ +.+..+ +...+++.++..+++.+..+++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 23345668999999999999999887765 3445666666 445444 4444444444444444444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=293.91 Aligned_cols=391 Identities=16% Similarity=0.133 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 010433 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 104 (511)
++|....+++++.+++++|...++++ .|.+.+|+ |++..+.|++.+++.+++++++++.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~g 64 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFA--GLTMGKDL------------------GLSATMFGLAATLFYAAYVICGIPSN 64 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHH--HHhhHhhc------------------CCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566666777888999999999887 57777877 89999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 105 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
+++||+|||+++..++++++++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|
T Consensus 65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 144 (412)
T TIGR02332 65 IMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVT 144 (412)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc----CCccchHHHHHHHHHHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCC-cchHHHH
Q 010433 185 ILVANLINYGTEKI----HPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTA-NVDAEFS 258 (511)
Q Consensus 185 ~~~g~~l~~~~~~~----~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 258 (511)
.++++++++.+... +..|||+.|++.++++++..+ .++++||+|+... .-..++.+...+...... +.++...
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 223 (412)
T TIGR02332 145 MALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLTLEQPEG 223 (412)
T ss_pred HHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhcccccccccc
Confidence 99999997665432 346899999998888776544 4567899884210 000111111111111000 0000000
Q ss_pred HHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHc--CCCChhHHHHHHHHHHHHHH
Q 010433 259 DLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL--GFGSGAALYSSVITGIALCI 336 (511)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~ 336 (511)
... +.....+..++++++ +. ..... +..++....++.+..|.|.+++++ |++..+++.......++.++
T Consensus 224 ~~~---~~~~~~~~~~~~~~~----~~-~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~ 294 (412)
T TIGR02332 224 AFA---HAAMPQRSMLREIFT----PA-IMLYT-LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIF 294 (412)
T ss_pred ccc---cccccHHHHHHHhcC----hH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHH
Confidence 000 000000011222221 11 11222 344555556777888999999874 66778889999999999999
Q ss_pred HHHHHHHHHhhcCChhHHH-hhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecc
Q 010433 337 AALISMAFVDKFGRRAFFL-EAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSE 415 (511)
Q Consensus 337 ~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (511)
+.++.++++||+++|+... .......++. .+.... .. .........+...+.... .+.......|
T Consensus 295 g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~-----------~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 360 (412)
T TIGR02332 295 GMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASAT-----------DH-NLIQLLGIIMASMGSFSA-MAIFWTTPDQ 360 (412)
T ss_pred HHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhc-----------CC-HHHHHHHHHHHHHHhhhh-hhHHHhhccc
Confidence 9999999999999776433 2222222221 111110 01 111111122222222111 1223344467
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHH
Q 010433 416 LFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVF 459 (511)
Q Consensus 416 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 459 (511)
.+|++.|+++.|+.+...+++++++|.+.+.+.+..+ +...+.+
T Consensus 361 ~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 361 SISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred ccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence 8899999999999999999999999999999998775 5444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=294.88 Aligned_cols=400 Identities=15% Similarity=0.086 Sum_probs=270.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 010433 21 RITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVST 100 (511)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~ 100 (511)
+.++.++.......++.+...++...++.. +|.+.+++ |+|..+.|++.+.+.+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~ 75 (434)
T PRK11663 16 RYRYWRRHILITMYLGYALFYFTRKSFNAA--MPEMLADL------------------GLSRSDIGLLATLFYITYGVSK 75 (434)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 344445555555667777777777666655 68888877 8999999999999999999999
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHH
Q 010433 101 FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180 (511)
Q Consensus 101 ~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 180 (511)
++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+
T Consensus 76 ~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 155 (434)
T PRK11663 76 FVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTA 155 (434)
T ss_pred hhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHH
Q 010433 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSD 259 (511)
Q Consensus 181 ~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (511)
.++|.++++++++... +.++||+.|++.+++.++..+ ..+++||+|++...+...++.++. ++
T Consensus 156 ~~~g~~~~~~~~~~l~--~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------~~ 219 (434)
T PRK11663 156 HNVGGALIPLVVGAIA--LHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA--------------LE 219 (434)
T ss_pred HHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc--------------cc
Confidence 9999999999865554 346899999998887765543 455678877532111100000000 00
Q ss_pred HHHHHHHHHhccCChHH-----hhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHH
Q 010433 260 LIDASNAARAIKNPFRN-----LFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIA 333 (511)
Q Consensus 260 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 333 (511)
..++.++.+.+.++ .++++..+.. . +..+........+..|.|.+++ ++|++..+++.......++
T Consensus 220 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~ 291 (434)
T PRK11663 220 ---LAQQQEGAGLSRKEILTKYVLLNPYIWLL----S-FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELG 291 (434)
T ss_pred ---cchhccccCCChhhhHHHHHhcChHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 00000000112222 2222222211 1 2233333445566778898884 5899999999999999999
Q ss_pred HHHHHHHHHHHHhhc--CChhHHH-hhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccc
Q 010433 334 LCIAALISMAFVDKF--GRRAFFL-EAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGW 410 (511)
Q Consensus 334 ~~~~~~~~g~l~d~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (511)
.++++++.|++.||+ ++|+... .......+....+.... ..............+.+ .........
T Consensus 292 ~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~-~~~~~~~~~ 359 (434)
T PRK11663 292 GFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-----------FASYVMQAACFFTIGFF-VFGPQMLIG 359 (434)
T ss_pred HHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-----------cccHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 999999999999998 3333322 11111111111111110 01111111111112211 111111223
Q ss_pred eeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH-HHHhcccc
Q 010433 411 LVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA-FIYFFLPE 476 (511)
Q Consensus 411 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 476 (511)
..+.|.+|++.|++++|+.+...++++.++|.+.+.+.++.++...+...+++.+++. ..+...++
T Consensus 360 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 360 MAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999998886665555554444433 33333333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=300.78 Aligned_cols=405 Identities=10% Similarity=0.010 Sum_probs=277.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHH
Q 010433 17 LYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAG 96 (511)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~ 96 (511)
+.++.+.+..+.+..+.++++++...+...++.+ .|.+.++| |++..+.|++.+++.+++
T Consensus 18 ~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~ 77 (467)
T PRK09556 18 VQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAA--QNDMISTY------------------GLSTTELGMIGLGFSITY 77 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHH
Confidence 3344566667777888888888888899998877 78888888 899999999999999999
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCc
Q 010433 97 LVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (511)
Q Consensus 97 ~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 171 (511)
.+++++.|+++||+|||+++..+.++++++.++.++ +++++.++++|+++|++.+...|...++++||+|+++|+
T Consensus 78 ~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg 157 (467)
T PRK09556 78 GVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG 157 (467)
T ss_pred HHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee
Confidence 999999999999999999999988888887776665 589999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccc-CCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhC
Q 010433 172 AVNQLFQLTTCLGILVANLINYGTEKI-HPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRG 249 (511)
Q Consensus 172 ~~~~~~~~~~~~G~~~g~~l~~~~~~~-~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 249 (511)
++++++..+.++|.+++++++...... ...+||..|.+.+++.++..+. +++.+++|+..... +.++ .. ..
T Consensus 158 ~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~~---~~ 230 (467)
T PRK09556 158 RFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---IF---GE 230 (467)
T ss_pred eeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---cc---cC
Confidence 999999999999999999886443322 1126999998888877766544 44567766421100 1111 00 00
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCh-----HHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhH
Q 010433 250 TANVDAEFSDLIDASNAARAIKNPF-----RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAA 323 (511)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 323 (511)
....+. +..++.+.+. +..++++..+... +..++....+.....|.|.|++ ++|++..++
T Consensus 231 ~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a 296 (467)
T PRK09556 231 PISEED---------KETESTDMTKWQIFVEYVLKNPVIWLLC-----FANIFLYIVRIGIDNWSPVYAFQELGFSKEDA 296 (467)
T ss_pred ccchhh---------hccccccCcHHHHHHHHHHcChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 000000 0000001111 1133443332222 3344444455667889998885 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhc
Q 010433 324 LYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGR 403 (511)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (511)
+.......++.+++.++.|+++||++||+..........++...+.... ....+...+..++.+....
T Consensus 297 ~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~G~~~~- 364 (467)
T PRK09556 297 INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH-----------ATSEYMYLASLFALGFLVF- 364 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh-----------cCcHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999998876554333332221111110 0112222222222222211
Q ss_pred ccccccceeecccCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHH------------hcchhhHHHHHHHHHHHHHHH
Q 010433 404 SWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALC------------HLKFGIFLVFGGLVVIMSAFI 470 (511)
Q Consensus 404 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 470 (511)
+........+.|.+|++.+|++.|+.+..+++ +++++|.+.|.+.+ ..+|...+.+..++.+++.+.
T Consensus 365 ~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 444 (467)
T PRK09556 365 GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICL 444 (467)
T ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHH
Confidence 11111123445999999999999999999997 66999999999999 445555555555555555444
Q ss_pred Hhcc
Q 010433 471 YFFL 474 (511)
Q Consensus 471 ~~~~ 474 (511)
.+.+
T Consensus 445 ~~~~ 448 (467)
T PRK09556 445 MAIV 448 (467)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=291.79 Aligned_cols=372 Identities=16% Similarity=0.184 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Q 010433 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (511)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 105 (511)
++.....+.++.+.++++.....+. +|.+.+++ |+++.+.+++.+++.+++.+++++.|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~~g~ 75 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYI--MYLIKADL------------------GLTDMEGAFLATAAFIGRPFGGALFGL 75 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667778888888887666 67777777 889999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHH
Q 010433 106 VTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGI 185 (511)
Q Consensus 106 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 185 (511)
++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.
T Consensus 76 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 155 (426)
T PRK12307 76 LADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN 155 (426)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 010433 186 LVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASN 265 (511)
Q Consensus 186 ~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (511)
++++.+..... +..+||+.|++..+..++........||++++..++.+. +++..+ .
T Consensus 156 ~~~~~l~~~l~--~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~~---------~ 212 (426)
T PRK12307 156 IIAAYFMPSFA--EAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHSQ---------S 212 (426)
T ss_pred HHHHHHHHHHc--ccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccccc---------c
Confidence 99998854443 345899999886554444333333456665432111000 000000 0
Q ss_pred HHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 266 AARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFV 345 (511)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 345 (511)
..+..+.+++++++++..+....... ..+......+....+.|.++++.|+++.+.+.......++.++++++.+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~ 290 (426)
T PRK12307 213 AWSVFSLSMKGLFNRAQFPLTLCVFI--VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCA 290 (426)
T ss_pred chhhhhHHHHHHHhhchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001123456666655544332222 2222233334456678888888899999999988999999999999999999
Q ss_pred hhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHH-hcccccccceeecccCCccchhh
Q 010433 346 DKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAY-GRSWGPLGWLVPSELFPLEMRSA 424 (511)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 424 (511)
||++||+....+..+..+..+.+.... .. .... ...+.++.+. ..+..+....++.|.+|++.|++
T Consensus 291 dr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 357 (426)
T PRK12307 291 DRIGLKKTFSIGLLMSFLFIFPLFRIP-----------QD-NYLL-LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGL 357 (426)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHc-----------cc-cHHH-HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhh
Confidence 999999988777665544433332210 01 1111 1112222211 11222333445579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 010433 425 GQSVVVCNNLLFTALIAQAFLAALCHLKFGI 455 (511)
Q Consensus 425 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (511)
++|+.+....+++.++|.+.+.+.+..++..
T Consensus 358 ~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 358 GTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 9999999999999999999999998887543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=290.86 Aligned_cols=382 Identities=17% Similarity=0.150 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 010433 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 104 (511)
+.|...+++.+..+++++|....+.. .|.+.+++ |.++.+.+++.+++.++..+++++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVA--APRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777778888999999888776 68888887 88999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 105 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 010433 185 ILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDA 263 (511)
Q Consensus 185 ~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (511)
..+++.++.... +..+||+.|++.++..++..+ ...++||+|++..++++.++.
T Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------- 206 (406)
T PRK11551 152 GALASVIGVLAA--GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR----------------------- 206 (406)
T ss_pred HHHHHHHHHHHc--cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----------------------
Confidence 999999864443 345899999988776665544 355678887543221110000
Q ss_pred HHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 010433 264 SNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMA 343 (511)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 343 (511)
+...+..++.+..+...... ...+......+....+.|.++++.|+++.+.+.......++.++++++.++
T Consensus 207 -------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 277 (406)
T PRK11551 207 -------APVLRALFGEGRATATLLLW--ISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGA 277 (406)
T ss_pred -------hhhHHHHhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00001111111111111111 122223334455667889999889999999999999999999999999999
Q ss_pred HHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchh
Q 010433 344 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS 423 (511)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 423 (511)
+.||+++|+.+..+.....++++.+... ...+.......+.+.+.. ...+....+..|.+|++.|+
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g 343 (406)
T PRK11551 278 LMDRLRPRRVVLLIYAGILASLAALAAA-------------PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRG 343 (406)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhh
Confidence 9999999988776555444443333221 111222233333333322 22344455668999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhcc
Q 010433 424 AGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 424 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
++.|+.+....++..++|.+.|.+.++.+ +...+.....+.+.+.+..+.+
T Consensus 344 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 344 TGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754 3334444444444444443333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=287.78 Aligned_cols=390 Identities=16% Similarity=0.153 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccccchh-hHhhhhhhhhhhccccccccccccCCchHHHHHH-----HHHHHHHHHHH
Q 010433 27 LIACMVAAMGGSLFGYDLGVSGGVTSMDD-FLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFT-----SSLYFAGLVST 100 (511)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~l~~~i~~ 100 (511)
+.......++.++++||...++.+ .|. +.++|+|+ .++. .+++. ++.+++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~g~ 81 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGIT--AALVFNREFFPQ----------------VSPA-MGTLAAFATFGVGFLFRPLGG 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------------CCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence 445666678899999999998766 343 44555442 2333 34443 45567788999
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCch
Q 010433 101 FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 172 (511)
Q Consensus 101 ~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 172 (511)
++.|+++||+|||+++..+.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 9999999999999999999999999999999999987 58889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc------CCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHH
Q 010433 173 VNQLFQLTTCLGILVANLINYGTEKI------HPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEK 246 (511)
Q Consensus 173 ~~~~~~~~~~~G~~~g~~l~~~~~~~------~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~ 246 (511)
..+..+.+..+|.+++..+...+... ..+|||++|++.+++.++.......+||+|+|...+++.++.
T Consensus 162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------ 235 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------ 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc------
Confidence 99999999999999987764433211 246999999998887766555555688988653222111000
Q ss_pred HhCCCcchHHHHHHHHHHHHHHhccCChH-HhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHH
Q 010433 247 VRGTANVDAEFSDLIDASNAARAIKNPFR-NLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAAL 324 (511)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 324 (511)
+.+.+.. .+++++..+. ... ...+......+....|.|.+++ .+|++.....
T Consensus 236 ----------------------~~~~~~~~~l~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~ 289 (438)
T PRK09952 236 ----------------------KKRIPVIEALLRHPGAFL---KII-ALRLCELLTMYIVTAFALNYSTQNLGLPRELFL 289 (438)
T ss_pred ----------------------cccCCHHHHHHHchHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 0011111 1223222211 111 1223333445566678888774 4788877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 010433 325 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRS 404 (511)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (511)
......++..+++.++.|+++||++||+.+..+.++..+....+..... .....+..+....+.+.+.+..
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHHHHH
Confidence 5555667778888899999999999999877665544433322222110 0111222222223333333322
Q ss_pred cccccceeecccCCccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhccccC
Q 010433 405 WGPLGWLVPSELFPLEMRSAGQSVVVCNNL-LFTALIAQAFLAALCHLK--FGIFLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 405 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
. +..+.+..|.+|++.|+++.|+.+.... +++.++|.+.+.+.+..+ +...+.+.+++.+++.+..+.++++
T Consensus 361 ~-~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 361 V-CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred H-HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 2 3335666899999999999999766654 788999999999987542 4444555555555555555556553
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=287.49 Aligned_cols=390 Identities=16% Similarity=0.137 Sum_probs=275.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 010433 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (511)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 101 (511)
.++++|.....+.++.+.++++....+++ .|.+.+++ |++..+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV--LAEVAGEF------------------GLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 34566677777788889999999988777 67888887 88999999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHH
Q 010433 102 GASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTT 181 (511)
Q Consensus 102 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 181 (511)
+.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHH
Q 010433 182 CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLI 261 (511)
Q Consensus 182 ~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (511)
.+|.++++.++.........+||+.|++.+++.++..+....+||++++..++++.++..+..++..+.... .+.
T Consensus 146 ~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 220 (405)
T TIGR00891 146 AVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR---IAN-- 220 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh---hhh--
Confidence 999999999976655433335999999877776666555667888876543322222111111111110000 000
Q ss_pred HHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHH
Q 010433 262 DASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALI 340 (511)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 340 (511)
..++.....++ +.+..+....... ...............+.|.++. ++|++..+.+.......++.+++.++
T Consensus 221 ----~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~ 293 (405)
T TIGR00891 221 ----IVMTLAAAMVQ--SAGKRWPTFVYLV-VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCV 293 (405)
T ss_pred ----hhhhhhHHhhh--hhhhhhHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000011 1111122111111 1122222223344556777764 58999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCcc
Q 010433 341 SMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE 420 (511)
Q Consensus 341 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 420 (511)
.+++.||++||+.+..+.....+........ ....+.......+.+.... ...+....+..|.+|++
T Consensus 294 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 360 (405)
T TIGR00891 294 FGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTD 360 (405)
T ss_pred HHHHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcc
Confidence 9999999999998776655432222211111 0111222222233333322 22233345567999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhH
Q 010433 421 MRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIF 456 (511)
Q Consensus 421 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 456 (511)
.|++++|+.+....+++.++|.+.|.+.++.| +...
T Consensus 361 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~ 397 (405)
T TIGR00891 361 QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA 397 (405)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999887 5433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=283.53 Aligned_cols=371 Identities=14% Similarity=0.124 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Q 010433 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (511)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 105 (511)
+|...+.+.++.++...+.....+. +|.+.+++ |+++.+.|++.+.+.+++.+++++.|+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~g~ 66 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGL--LSDIAQSF------------------HMQTAQVGLMLTIYAWVVALMSLPLML 66 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcc--hHHHHhHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333222 67888887 999999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHH
Q 010433 106 VTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGI 185 (511)
Q Consensus 106 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 185 (511)
++||+|||+++..+.++.+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.
T Consensus 67 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~ 146 (390)
T PRK03545 67 LTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM 146 (390)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 010433 186 LVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDAS 264 (511)
Q Consensus 186 ~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (511)
+++|+++..+. +..|||+.|++.++++++..+. ...+||.|+ +++++
T Consensus 147 ~ig~~l~~~l~--~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~------------------------- 194 (390)
T PRK03545 147 VLGLPLGRVIG--QYLGWRTTFLAIGGGALITLLLLIKLLPLLPS-----EHSGS------------------------- 194 (390)
T ss_pred HHHhhHHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCcch-------------------------
Confidence 99999966544 3458999999998887766544 444666542 00000
Q ss_pred HHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 010433 265 NAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMA 343 (511)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 343 (511)
.++.++.++++..+...... +...........+.+.++++ .|++..+++......+++.++++++.++
T Consensus 195 ------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~ 263 (390)
T PRK03545 195 ------LKSLPLLFRRPALVSLYLLT-----VVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSR 263 (390)
T ss_pred ------HHHHHHHHhCcHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 00123455555433322211 11122222334455555554 7999999999999999999999999999
Q ss_pred HHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchh
Q 010433 344 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS 423 (511)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 423 (511)
+.||+++|... .+..+...+...+.... ...+.......+.+.+.. ...+.......+..| +.|+
T Consensus 264 l~dr~~~~~~~-~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~ 328 (390)
T PRK03545 264 LGNRHPSGFLL-IAIALLLVCLLLLLPAA------------NSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATD 328 (390)
T ss_pred HhhccchhHHH-HHHHHHHHHHHHHHHHh------------chHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHH
Confidence 99999987643 33333333332222111 112333333444444432 222333344456666 5789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhcc
Q 010433 424 AGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 424 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
+++|+.+...+++..+++.+.|.+.++.++...+...+.+.+.+.+.....
T Consensus 329 ~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 329 VAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987766666655555555544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=288.17 Aligned_cols=399 Identities=17% Similarity=0.155 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhh
Q 010433 24 SYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGA 103 (511)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 103 (511)
++++.....+.++.++.+++....++. +|.+.+++ |++..+.+++.+.+.+++.+++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~ 75 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLV--LTEVQGEF------------------GLTTVQAASLISAAFISRWFGGLLL 75 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677888888888887766 67888887 8899999999999999999999999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHH
Q 010433 104 SYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183 (511)
Q Consensus 104 g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 183 (511)
|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+
T Consensus 76 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 155 (496)
T PRK03893 76 GAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI 155 (496)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHH-HHHH
Q 010433 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFS-DLID 262 (511)
Q Consensus 184 G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 262 (511)
|..+++.++.... +..+||+.|++.++..++.++....+||++++..++++.++.++..+.....+....... ....
T Consensus 156 g~~~~~~~~~~l~--~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (496)
T PRK03893 156 GAVVAAQVYSLVV--PVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAA 233 (496)
T ss_pred HHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHH
Confidence 9999999965544 456899999886655554444455678876543322211111111111100000000000 0000
Q ss_pred H----HHHHHhccCChH--------------Hhh-ccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChh
Q 010433 263 A----SNAARAIKNPFR--------------NLF-KKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGA 322 (511)
Q Consensus 263 ~----~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 322 (511)
. ..........+. -.. .....++...... ...+...........+.|.+++ ++|++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~ 312 (496)
T PRK03893 234 AAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLM-VVVLFAFLYSWPIQALLPTYLKTDLGYDPHT 312 (496)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH-HHHHHHHhccchHHHHHHHHHHhhcCCCHHH
Confidence 0 000000000000 000 0111111111111 1122222222345667888885 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHh
Q 010433 323 ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYG 402 (511)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (511)
++.......++.+++.++.+++.||++||+.+..+..+..+..+.+.... ....+.......+.. ..+
T Consensus 313 ~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~ 380 (496)
T PRK03893 313 VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG-----------GANVWVLGLLLFFQQ-MLG 380 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-----------ccHHHHHHHHHHHHH-HHh
Confidence 99999999999999999999999999999887766544443332221110 111122212112111 222
Q ss_pred cccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Q 010433 403 RSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFL 457 (511)
Q Consensus 403 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (511)
.+..+....+..|.+|++.|++++|+.+....+++.++|.+.|.+.++.++...+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~ 435 (496)
T PRK03893 381 QGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTAL 435 (496)
T ss_pred cccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHH
Confidence 2233344455679999999999999999999999999999999999988865443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=277.37 Aligned_cols=360 Identities=19% Similarity=0.270 Sum_probs=242.0
Q ss_pred HHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHH-HHHH-----HHHHHHHHHh
Q 010433 29 ACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLF-TSSL-----YFAGLVSTFG 102 (511)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~l~~~i~~~~ 102 (511)
....++++.+++++|...+++. .|.+.+++ +.++.+.+.+ .+.. .++..+++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~--~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFY--ATAIAKTF------------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4556678899999999999887 78888888 5555554433 2322 2333578999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhH
Q 010433 103 ASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (511)
Q Consensus 103 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 174 (511)
.|+++||+|||+.++.+.+++++++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 99999999999999999999999999999999987 4688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc------cCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHh
Q 010433 175 QLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVR 248 (511)
Q Consensus 175 ~~~~~~~~~G~~~g~~l~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~ 248 (511)
++...+..+|..+++.++..... .+.+|||++|++..+...+........||++++..+++
T Consensus 156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~------------- 222 (434)
T PRK15075 156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH------------- 222 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-------------
Confidence 99999888888888877655421 23569999999865543322222233444432110000
Q ss_pred CCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHH
Q 010433 249 GTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSS 327 (511)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 327 (511)
+.+.+..+++..++ ++...... ...+.....++....|.|.++++ +|++..+.++..
T Consensus 223 ------------------~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~ 280 (434)
T PRK15075 223 ------------------RPSMREIFRSLAAN---WRIVLAGM-LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVT 280 (434)
T ss_pred ------------------ccccccHHHHHHHh---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 00000011111111 11121111 22333344566778889999876 799988888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q 010433 328 VITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGP 407 (511)
Q Consensus 328 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (511)
....++.+++.++.|+++||++||+....+..+..+......... . . .... ........+.+.+.+ ...+
T Consensus 281 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~---~----~~~~-~~~~~~~~~~~~~~g-~~~~ 350 (434)
T PRK15075 281 LCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-V---A----APSF-ARMLAVELWLSFLYG-SYNG 350 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-H---c----CCch-HHHHHHHHHHHHHHH-HHHh
Confidence 888999999999999999999999987765443322111111110 0 0 0111 111111222222322 2223
Q ss_pred ccceeecccCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcch
Q 010433 408 LGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKF 453 (511)
Q Consensus 408 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 453 (511)
....+..|.+|++.|+++.++.+..... ++.++|.+.+.+.+..++
T Consensus 351 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 351 AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 3345567999999999999997665554 588899999999998774
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=250.63 Aligned_cols=420 Identities=17% Similarity=0.190 Sum_probs=307.3
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 010433 21 RITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVST 100 (511)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~ 100 (511)
...+.+|...+.+.++.+-+.+..-..+.+ .|.....+ +.+..|..++......+..+++
T Consensus 71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i--~~~l~~~w------------------~~s~~q~~llt~~v~~gmllga 130 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLI--LPALDEVW------------------GPSEGQAPLLTLSVFLGMLVGA 130 (528)
T ss_pred CcccchhhHHHHhhhHHHHHHHHHHHHHHH--HHHHHhhh------------------chhhhhhhHHHHHHHhhhhhhh
Confidence 355677777777777766554444333323 34444444 7788999999999999999999
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHH
Q 010433 101 FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180 (511)
Q Consensus 101 ~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 180 (511)
..||..+|++|||+.+....+..++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..
T Consensus 131 ~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~ 208 (528)
T KOG0253|consen 131 MVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FF 208 (528)
T ss_pred hhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HH
Confidence 9999999999999999999999999999999999999999999999999998 899999999999999999887777 99
Q ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchH-----
Q 010433 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDA----- 255 (511)
Q Consensus 181 ~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 255 (511)
+.+|.++...+++... ..+||||.....+.+..+.+...+++|||||++..++++++|.+.++++.+.|..+-
T Consensus 209 waig~v~ea~law~vm--~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl 286 (528)
T KOG0253|consen 209 WAIGQVFEALLAWGVM--SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVL 286 (528)
T ss_pred HHHHHHHHHHHHHHHH--HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCccee
Confidence 9999999999965544 445999999888888777777888899999999999999999999999887663211
Q ss_pred ----------HHHHHHHH-HHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHc--------
Q 010433 256 ----------EFSDLIDA-SNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL-------- 316 (511)
Q Consensus 256 ----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 316 (511)
|..+..+. .+..++.+....+++..+.+|.++.... .++.+-..+++...+...+++..
T Consensus 287 ~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~--iwfgnafsyyg~VLlttelfqsgd~c~~~~r 364 (528)
T KOG0253|consen 287 ESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWR--IWFGNAFSYYGSVLLTTELFQSGDACPLYNR 364 (528)
T ss_pred eeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHhccCccccchh
Confidence 00011110 1122334556677777766666554433 44444444555444443333321
Q ss_pred ------------CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 317 ------------GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 317 ------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
..+...-..-..+..+..++|.++.+++.||+|||+.+....+++++..+++....
T Consensus 365 ~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~------------ 432 (528)
T KOG0253|consen 365 FLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK------------ 432 (528)
T ss_pred cchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc------------
Confidence 11122223345567788999999999999999999999988887777666555442
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
.........+..-.+...++.. .+.|..|++|+..|+++.|.+.....+|+++.|.+. ...+..-+...++..++++
T Consensus 433 -~rn~~tvllf~arafisg~fqv-aYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~i 509 (528)
T KOG0253|consen 433 -TRNAYTVLLFTARAFISGAFQV-AYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFI 509 (528)
T ss_pred -CcchhHHHHHHHHHHHhchheE-EEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHH
Confidence 1122233334444444445544 488999999999999999999999999999999988 3333333555666677777
Q ss_pred HHHHHHHhccccCCCCC
Q 010433 465 IMSAFIYFFLPETKQVP 481 (511)
Q Consensus 465 ~~~~~~~~~~~~~~~~~ 481 (511)
+.++...++-.|+|+|.
T Consensus 510 lagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 510 LAGIAVCFFPIETKGRS 526 (528)
T ss_pred HHHHHheeeeeccCCCC
Confidence 77777777777888875
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=271.21 Aligned_cols=341 Identities=14% Similarity=0.084 Sum_probs=231.7
Q ss_pred chhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010433 53 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 132 (511)
Q Consensus 53 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 132 (511)
+|.+.+|| |+|..+.|++.+++.+++.+++++.|+++||+|||+++..++.....+.+....
T Consensus 14 lp~i~~~~------------------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 75 (368)
T TIGR00903 14 LSLVAEDI------------------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD 75 (368)
T ss_pred HHHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 78888888 899999999999999999999999999999999999876655555444433333
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Q 010433 133 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 212 (511)
Q Consensus 133 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~ 212 (511)
+++++.++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++..+.. .+|||+.|++.++
T Consensus 76 ~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~--~~gWr~~f~~~~~ 152 (368)
T TIGR00903 76 PFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT--AGGLQLLIIPIAA 152 (368)
T ss_pred hccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHH
Confidence 47999999999999999986 55666677999999999999999999999999999999766543 4699999999888
Q ss_pred HHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHH
Q 010433 213 PATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 291 (511)
Q Consensus 213 ~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (511)
++++..+ .++++||+|++. ++.. + .++ . .++++++++++..+...
T Consensus 153 l~~~~~~~~~~~lp~~p~~~---~~~~---------------~--~~~------~----~~~~~~ll~~~~~~~~~---- 198 (368)
T TIGR00903 153 VAAAGIILVLAALPALPFQA---AEGF---------------G--FKD------A----VKEFGALAGRKDLWIIG---- 198 (368)
T ss_pred HHHHHHHHHHHHcCCCCCCC---CCCc---------------c--hHH------H----HHHHHHHHcChhHHHHH----
Confidence 8777644 456789988641 1000 0 000 0 01245667765544333
Q ss_pred HHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHh-hhHHHHHHHHH
Q 010433 292 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR---AFFLE-AGTEMIIYMVI 367 (511)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~ 367 (511)
+..++....++.+..|+|.++++.|++.. .+.......+.+.++ .+++.||..|| +.... .....++....
T Consensus 199 -~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~ 273 (368)
T TIGR00903 199 -AILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLA 273 (368)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555566677788999999988888764 555555555544444 57788877543 32221 22222221111
Q ss_pred HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 368 VAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 447 (511)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (511)
+... ...+..+....+.+++....+ +..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+
T Consensus 274 ~~~~-------------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~ 339 (368)
T TIGR00903 274 LAFE-------------LNRLALFAFIGIAGLLMLPAY-AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF 339 (368)
T ss_pred HHHc-------------cccHHHHHHHHHHHHhhhhhH-HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence 1110 011222222232333222222 33456778999999999999999999999999999999887
Q ss_pred HHhcc-hhhHHHHHHHHHHHHHH
Q 010433 448 LCHLK-FGIFLVFGGLVVIMSAF 469 (511)
Q Consensus 448 ~~~~~-~~~~~~~~~~~~~~~~~ 469 (511)
.. + ...+..+++...+.++.
T Consensus 340 ~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 340 IS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred hc--CHHHHHHHHHHHHHHHHHH
Confidence 74 3 33444444444444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=271.81 Aligned_cols=371 Identities=12% Similarity=0.068 Sum_probs=260.9
Q ss_pred HHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 010433 32 VAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 111 (511)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 111 (511)
..+++.+..... ..+++. +|.+.++| |+|.++.+++.+++.+++.+++++.|+++||+|
T Consensus 14 ~~~~~~~~~~~~-~~~~~~--lp~i~~~~------------------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G 72 (393)
T PRK09705 14 LVLIGLNMRPLL-TSVGPL--LPQLRQAS------------------GMSFSVAALLTALPVVTMGGLALAGSWLHQHVS 72 (393)
T ss_pred HHHHHHHcchhh-hccchh--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhC
Confidence 444444443333 333334 78888888 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010433 112 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (511)
Q Consensus 112 rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 191 (511)
||+++..+..+++++.++++++++++.++++|+++|++.+...+....++.+++| ++|+++++.+..+..+|..+++.+
T Consensus 73 ~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 73 ERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred chHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996 889999999999999999999988
Q ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHHhccc-cCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhc
Q 010433 192 NYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAI 270 (511)
Q Consensus 192 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (511)
+..+.... .+||..+.+.++..++..+.++.. ++.|+ + ++ ++
T Consensus 152 ~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~----------------------------~~- 194 (393)
T PRK09705 152 TPWLVQHS-ETWYQTLAWWALPAVVALFAWWWQSAREVA-----S--SH----------------------------KT- 194 (393)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----c--cc----------------------------CC-
Confidence 65544321 379998877666655443333222 22221 0 00 00
Q ss_pred cCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010433 271 KNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 350 (511)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 350 (511)
+.+..+.++++..+... +..+.....+.....+.|.+++++|.+..+++......+++.++++++.+++.||++|
T Consensus 195 ~~~~~~~l~~~~~~~l~-----~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~ 269 (393)
T PRK09705 195 TTTPVRVVFTPRAWTLG-----VYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDR 269 (393)
T ss_pred CcCCcccccCHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 00111222222222111 2233334455677788999998899999999999999999999999999999999999
Q ss_pred hhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccC-CccchhhHHHHH
Q 010433 351 RAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF-PLEMRSAGQSVV 429 (511)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~ 429 (511)
|+....+..+..++...+.... .. .... ...+.+.+.+...+. ......+.. |++.+++..|+.
T Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~-----------~~-~~~~--~~~l~g~g~g~~~~~-~~~~~~~~~~~~~~~g~~~g~~ 334 (393)
T PRK09705 270 RKLLMLALVLQLVGFCGFIWLP-----------LQ-LPVL--WAMVCGLGLGGAFPL-CLLLALDHSVQPAIAGKLVAFM 334 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHcc-----------ch-HHHH--HHHHHHHhccchHHH-HHHHHHhhcCCHHHHHHHHHHH
Confidence 9888877666555554433211 11 1111 122233333333332 232333555 467899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHH-HHHHHHHhccccCCCCC
Q 010433 430 VCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVV-IMSAFIYFFLPETKQVP 481 (511)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 481 (511)
+...++++.++|.+.+.+.|..| +...+.+..++. +...+...+.+|++++.
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999999999999876 444444433333 33334455666666543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=270.86 Aligned_cols=445 Identities=21% Similarity=0.245 Sum_probs=311.9
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHH
Q 010433 19 EYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLV 98 (511)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i 98 (511)
.....|+....+.++.++.|.++||...++.+ .|.+...|.. -++.. =+.++...+.+..+..+|..+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lV--t~il~~lY~~---------~~~~~-g~~ps~i~~~Vn~~A~vGti~ 99 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLV--TKILGYLYYH---------GDESG-GHYPSGVLALVNAAALVGTIF 99 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHH--HHHHHHHhcC---------CCCCC-CcCCchHHHHHHHHHHHHHHH
Confidence 33457888999999999999999999999877 4555555521 11111 156788889999999999999
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCc
Q 010433 99 STFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-------HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (511)
Q Consensus 99 ~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 171 (511)
||++.|+++||+|||+++...+++..+++++++++. -.+++...|+++|+|.|+-+|.+.++.+|....++||
T Consensus 100 GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 100 GQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG 179 (538)
T ss_pred HHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence 999999999999999999999999999999888762 2578899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc-----cC--------CccchHHHHHHHHHHHHHHHHhccccCChhHHHhcC-CH
Q 010433 172 AVNQLFQLTTCLGILVANLINYGTEK-----IH--------PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG-KL 237 (511)
Q Consensus 172 ~~~~~~~~~~~~G~~~g~~l~~~~~~-----~~--------~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~-~~ 237 (511)
...+...+..+.|...|.+++..+.. .. ..-||..|-+.++++++.+...+.+|||+++-.... +.
T Consensus 180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~ 259 (538)
T KOG0252|consen 180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKL 259 (538)
T ss_pred ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCH
Confidence 98888877777777777666432211 00 124999999999999988888899999998763332 22
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCC---hHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH
Q 010433 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNP---FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314 (511)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (511)
+.+.+..++ .... +.++..+.....+..+.+ +...+..+ .-..++... ..++..-..++....+...+++
T Consensus 260 ~~a~~d~~k---~~~~--~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~-~~WFllDiafy~~nL~~s~I~~ 332 (538)
T KOG0252|consen 260 KQAAGDMKK---VLSV--DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTA-GTWFLLDIAFYGQNLFQSVIFS 332 (538)
T ss_pred hhhhhcccc---cccc--ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHH-HHHHhhhhhhhccccHHHHHHH
Confidence 222211111 1111 000000000011111111 22222222 112233333 5677777778888888899999
Q ss_pred HcCCCChhHHH---------HHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 315 SLGFGSGAALY---------SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 315 ~~g~~~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
..|+.+..... ...+.....++|..+...++|++|||+..+.++.++.+..+.+..... + ..
T Consensus 333 ~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~----~-----~~ 403 (538)
T KOG0252|consen 333 AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN----Q-----LE 403 (538)
T ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc----c-----cc
Confidence 88876654333 112222233335555667899999999999998888777766655421 0 11
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-----HLKFGIFLVFG 460 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 460 (511)
.....++...+..+....+-+.....+.+|.+|++.|+++.|+....+-.|++++...+.++.+ ..+....++..
T Consensus 404 ~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~ 483 (538)
T KOG0252|consen 404 NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIIL 483 (538)
T ss_pred ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHH
Confidence 2222334444444555566667778889999999999999999999999999999999999988 45555556666
Q ss_pred HHHHHHHHHHHhccccCCCCCHHHHHHHhcc
Q 010433 461 GLVVIMSAFIYFFLPETKQVPIEEIYLLFEN 491 (511)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (511)
+.+.+.+.+..+++||+++++++|++++.+.
T Consensus 484 ~~~~~~gi~~T~l~pEtk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 484 AGCMLLGILFTLLIPETKGKSLEEISNEEES 514 (538)
T ss_pred HHHHHHhHheeEEeecccccCHHHhcChhhc
Confidence 6666667777778889999999988554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=280.17 Aligned_cols=386 Identities=12% Similarity=0.014 Sum_probs=280.0
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 010433 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 104 (511)
++|.....++++.++...|.++++.+ +|.+.+++ |.+.++.+|+.+.|.+++.++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G 62 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMG 62 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777889999999999999888 79999998 88999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcC-CCCCCchhHHHHHHHHHH
Q 010433 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCL 183 (511)
Q Consensus 105 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~ 183 (511)
+++||+|||++++.+.+++.++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+
T Consensus 63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~ 142 (495)
T PRK14995 63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG 142 (495)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888887776 678999999999999999
Q ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHH---------HHHh--CCC
Q 010433 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVL---------EKVR--GTA 251 (511)
Q Consensus 184 G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~---------~~~~--~~~ 251 (511)
|.++||++++.+.. ..+||+.|++...++++.+++ .+++||+|+. ++++.+...... .... .++
T Consensus 143 g~~~gp~lgg~l~~--~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~ 218 (495)
T PRK14995 143 GAAFGPLVGGILLE--HFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKG 218 (495)
T ss_pred HHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhcccc
Confidence 99999999765554 468999999988777766544 4567776531 111111111000 0000 000
Q ss_pred cchH-H-HH-------HHHHHHHHHHhccCCh--HHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCC
Q 010433 252 NVDA-E-FS-------DLIDASNAARAIKNPF--RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFG 319 (511)
Q Consensus 252 ~~~~-~-~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 319 (511)
.... . .. ........+...+.+. .++++++...... +..+..........++.|.+++. +|++
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lq~v~g~s 293 (495)
T PRK14995 219 FLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGV-----VMAMTAMITLVGFELLMAQELQFVHGLS 293 (495)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0000 0 00 0000000111112222 3456655543332 22333333445566788888876 8999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHH
Q 010433 320 SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVL 399 (511)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (511)
+.+++....+..++..++.++.|++.||+++|+.+..+..+..++.+++.... .....+.......+.+.
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G~ 363 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMALLGF 363 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887777666655555443321 01112333444555566
Q ss_pred HHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 400 AYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
+.+....+... ...+..|++.++.+.++.++...+|+.+++.+.+.+.++
T Consensus 364 g~g~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 364 SAASALLASTS-AIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHHHHHHHH-HHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544433 345778999999999999999999999999999988764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=271.30 Aligned_cols=370 Identities=14% Similarity=0.063 Sum_probs=240.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~ 154 (511)
|+++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 77999999999999999999999999999999999999999999999999888764 78889999999999999998
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHHHHHHHHH-HHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-HhccccCChhHHH
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL-VANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLV 232 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~ 232 (511)
+.....+.|++|+++|++++++++.+.++|.. .+++++...... .+||+.|++.+++.++..+ ..+++||+|+...
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~ 216 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF--NDWHAALYMPAFAAILVALFAFAMMRDTPQSCG 216 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence 88888999999999999999999999999874 455543222222 3899999998887776544 4566788875321
Q ss_pred hcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHH-----hhccCCchhHHHHHHHHHHHhhhcchhhHHh
Q 010433 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRN-----LFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307 (511)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
.+ +.++.++ +..... +..++.+.+.++ .++++..+... +..+......+....
T Consensus 217 ~~-~~~~~~~---~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~ 274 (452)
T PRK11273 217 LP-PIEEYKN---DYPDDY-------------NEKHEQELTAKQIFMQYVLPNKLLWYIA-----IANVFVYLLRYGILD 274 (452)
T ss_pred CC-Chhhhhh---cccccc-------------ccccCCCccHHHHHHHHHHcChHHHHHH-----HHHHHHHHHHHHHHH
Confidence 11 1111000 000000 000000111222 33333332222 223333334456778
Q ss_pred cHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHh-hhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010433 308 YAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF--GRRAFFLE-AGTEMIIYMVIVAITLALEFGEGKPLP 383 (511)
Q Consensus 308 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
|.|.++++ .|++..+++.......++.+++.++.|+++||+ +||+.... ...+..++.+.+... +
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-----------~ 343 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-----------P 343 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-----------c
Confidence 99999976 789988988888888899999999999999999 44433221 111112222111111 0
Q ss_pred cchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHhcchhhHHHHHHH
Q 010433 384 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTAL-IAQAFLAALCHLKFGIFLVFGGL 462 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 462 (511)
....+.........+.... ........+..|.+|++.||+++|+.+...++++.+ +|.+.+.+.++.++...+...+.
T Consensus 344 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~ 422 (452)
T PRK11273 344 AGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 422 (452)
T ss_pred ccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHH
Confidence 0111212222222222111 111112234468999999999999999998888765 78999999998887655544444
Q ss_pred HHHHHHHHHhccccCCCCCHHH
Q 010433 463 VVIMSAFIYFFLPETKQVPIEE 484 (511)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (511)
+.+++++...+..+.++|+++|
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 423 GSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHHHHHhccccchHHH
Confidence 4444444444444444444444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=263.22 Aligned_cols=328 Identities=16% Similarity=0.150 Sum_probs=236.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|+++++.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+...+...
T Consensus 51 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 130 (394)
T PRK10213 51 GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSA 130 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKL 237 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~ 237 (511)
+++.|++|+++|++++++...+.++|.+++|+++..+.. .++||+.|++.++++++..+. ...+||+|+. +++
T Consensus 131 ~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~- 204 (394)
T PRK10213 131 SLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---PSH- 204 (394)
T ss_pred HHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---ccc-
Confidence 999999999999999999999999999999999766553 458999999988777665443 3346765420 000
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhc-HHHHHHHc
Q 010433 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY-APVIFQSL 316 (511)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 316 (511)
...+..+.++++..+...+. .+...........+ .|.+.+++
T Consensus 205 --------------------------------~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~ 247 (394)
T PRK10213 205 --------------------------------QKQNTFRLLQRPGVMAGMIA-----IFMSFAGQFAFFTYIRPVYMNLA 247 (394)
T ss_pred --------------------------------chhHHHHHhcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 00012234444333332221 12222222333344 47777788
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010433 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICL 396 (511)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
|+++.+.+......+++.+++.++.+++.||.+++ .+.....+.....+.+.... ...+.......+
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~l 314 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLWG------------SDKIVATGVAII 314 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHH
Confidence 99999999999999999999999999999996444 33333332222222222111 122344444555
Q ss_pred HHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 397 FVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
.+.+++...... ...+.+..| +.++...++.....+++..+++.+.|.+.+..++...+...++..
T Consensus 315 ~G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 315 WGLTFALVPVGW-STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHhhhHHH-HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 555554333323 333456666 446677777778888999999999999999888666555554433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=273.32 Aligned_cols=354 Identities=13% Similarity=0.022 Sum_probs=223.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.+... ...
T Consensus 67 gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~ 145 (476)
T PLN00028 67 NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQ 145 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988654 456
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc----cc---CCccchHHHHHHHHHHHHHHHHhcccc-CChhH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE----KI---HPWGWRLSLGLATVPATLMFVGGLFLP-ETPNS 230 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~----~~---~~~~wr~~f~~~~~~~~~~~~~~~~~~-esp~~ 230 (511)
.+++|++|+++|++++++......+|..+++.+..... .. ...|||+.|++.+++.++..+..++++ +.|+
T Consensus 146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~- 224 (476)
T PLN00028 146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD- 224 (476)
T ss_pred HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-
Confidence 78999999999999999998777777777665532221 11 124899999999988877665544443 4342
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHH
Q 010433 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (511)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
++.++.++ +.+.+ +......+++.++++..+...+ ..+........+..+.|
T Consensus 225 ----~~~~~~~~-------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p 276 (476)
T PLN00028 225 ----GNYRELKK-------SGTMP------------KDSFSKVLRYGVTNYRTWILAL-----TYGYSFGVELTMDNIIA 276 (476)
T ss_pred ----CchhhHHh-------cCccc------------cccHHHHHHHHHcCchhHHHHH-----HHHHHHHHHHHHHhHHH
Confidence 11000000 00000 0000011233344444332221 22222223344566778
Q ss_pred HHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH----HHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 311 VIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAF----FLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 311 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.++. ++|+++.+++.......++.++++++.|+++||++||+. .........+..+...... . ..
T Consensus 277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-~---------~~ 346 (476)
T PLN00028 277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-R---------AN 346 (476)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-c---------cc
Confidence 7774 479999999999999999999999999999999986521 1111111111111111110 0 01
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVI 465 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
..+..+..++++..+..... ...+.+..+.. ++.++++.|+.+..+.+++.+++.+.+ ..+..++...+.+.+++.+
T Consensus 347 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~ 423 (476)
T PLN00028 347 SLGAAIVVMILFSIFVQAAC-GATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMII 423 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhh-hhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHH
Confidence 11222222333333322222 22344445654 468999999998877788877777654 1122235444544454555
Q ss_pred HHHHHHhccc
Q 010433 466 MSAFIYFFLP 475 (511)
Q Consensus 466 ~~~~~~~~~~ 475 (511)
++.++.++.+
T Consensus 424 i~~~~~~~~~ 433 (476)
T PLN00028 424 ACTLPVAFIH 433 (476)
T ss_pred HHHHHHHhee
Confidence 5555555554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=267.18 Aligned_cols=347 Identities=14% Similarity=0.107 Sum_probs=252.3
Q ss_pred chhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010433 53 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 132 (511)
Q Consensus 53 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 132 (511)
.|.+.+++ |++.++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++
T Consensus 26 ~~~~~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~ 87 (377)
T TIGR00890 26 APPLGRYF------------------GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87 (377)
T ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH
Confidence 67777777 889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Q 010433 133 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 212 (511)
Q Consensus 133 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~ 212 (511)
+++++.++++|++.|++.+..++.....+.+++| ++|+++.++...+.++|.++++++..... +..+||+.|++.++
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~f~~~~~ 164 (377)
T TIGR00890 88 ADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI--NLEGVPAAFIYMGI 164 (377)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 9999999999999999999998888899999996 67999999999999999887665533332 34589999999998
Q ss_pred HHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHH
Q 010433 213 PATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 291 (511)
Q Consensus 213 ~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (511)
+.++..+. .++++|+|+. ..+++ ++.+ +.+.+.++.++++..+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~--------------~~~~~~~~~~~~~~~~~~~~~-- 213 (377)
T TIGR00890 165 IFLLVIVLGAFLIGYPPGQ-LIKTN--------------IEVS--------------VKDYTVWEMLRTPQFWVLYLS-- 213 (377)
T ss_pred HHHHHHHHHHHheecCchh-ccccC--------------cccc--------------hhhhhHHHHHcCccHHHHHHH--
Confidence 88776555 3445544321 00000 0000 001122344554443332221
Q ss_pred HHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHH
Q 010433 292 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 371 (511)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (511)
.+...........+.+.+.+++|.+..+.+.......++.++++++.+++.||++||+.+..+.....++.+.+...
T Consensus 214 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 290 (377)
T TIGR00890 214 ---FFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI 290 (377)
T ss_pred ---HHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc
Confidence 22222222334445566677888888888999999999999999999999999999998887776666665544332
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 372 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
. ....+.......+.+.+.+... +....+..|.+|+++|+++.|+.+....++..++|.+.+.+.++.
T Consensus 291 ~-----------~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 291 P-----------MLNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred c-----------cchhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 0111222222333334433333 233445679999999999999999999999999999999999888
Q ss_pred chhhHHHHHHHHHHH
Q 010433 452 KFGIFLVFGGLVVIM 466 (511)
Q Consensus 452 ~~~~~~~~~~~~~~~ 466 (511)
++...+...+++.++
T Consensus 359 g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 359 GFEYTFIVTGAFALT 373 (377)
T ss_pred chhhHHHHHHHHHHH
Confidence 876666555544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=270.03 Aligned_cols=383 Identities=19% Similarity=0.223 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 010433 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 104 (511)
+.+.....+.+..+..+++....++. .|.+.+++ |.+..+.+++.+.+.++..+++++.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g 73 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFA--APAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALFFG 73 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444555555667777777666555 67777776 88999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 105 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
+++||+|||+.+..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|
T Consensus 74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 153 (398)
T TIGR00895 74 PLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153 (398)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-HHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 010433 185 ILVANLINYGTEKIHPWGWRLSLGLATVPATLMF-VGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDA 263 (511)
Q Consensus 185 ~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (511)
..+++.+++... +..+||+.|++.++..++.. +...++||++++..++ +.++..+..++.......+.+. +..+.
T Consensus 154 ~~~~~~~~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 229 (398)
T TIGR00895 154 AAVGGFLAGWLI--PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQ 229 (398)
T ss_pred HHHHHHHHHHHh--hcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccccc
Confidence 999999965544 34589999998875555543 4456789988765544 3333333322221111000000 00000
Q ss_pred HHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 010433 264 SNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMA 343 (511)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 343 (511)
+.+.+..+...+..++.+..+...... ...+...........+.|.+.++.|+++.+.+.......++.+++.++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (398)
T TIGR00895 230 KATQGTKRSVFKALFQGKTARITVLLW--LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307 (398)
T ss_pred ccccchhhHHHHHHhcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111122233333333322222 223334445566677888777889999999999999999999999999999
Q ss_pred HHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchh
Q 010433 344 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS 423 (511)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 423 (511)
+.||+++|+... ...+..+...++.... ...+......++.+.+.+... +....+..|.+|++.|+
T Consensus 308 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g 373 (398)
T TIGR00895 308 LADRLGPRVTAL-LLLLGAVFAVLVGSTL------------FSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRA 373 (398)
T ss_pred HHhhcchHHHHH-HHHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHH
Confidence 999999984433 3332222222222211 112333344444454444333 34456668999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 424 AGQSVVVCNNLLFTALIAQAFLAA 447 (511)
Q Consensus 424 ~~~g~~~~~~~~~~~~~~~~~~~~ 447 (511)
++.|+.+....++..++|.+.|.+
T Consensus 374 ~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 374 TGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999998864
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=264.05 Aligned_cols=339 Identities=16% Similarity=0.164 Sum_probs=239.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------VHISMLLLGRIFLGMGI 150 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~ 150 (511)
|.|..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.++ .+++.+++.|+++|++.
T Consensus 47 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (399)
T PRK05122 47 GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE 126 (399)
T ss_pred CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH
Confidence 8899999999999999999999999999999999999999999988887766554 25778999999999999
Q ss_pred hhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhH
Q 010433 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230 (511)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 230 (511)
+...+....++.|++|+++|++++++...+..+|.++|+.++..+.. ..|||..+++.++..++..+.....|++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 203 (399)
T PRK05122 127 SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH--WGGLAGLGLLIMLLALLGLLLARPRPAVPP- 203 (399)
T ss_pred HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHHHhcCCCCCC-
Confidence 99999999999999999999999999999999999999999655543 458999988877665544433333343221
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHH
Q 010433 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (511)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
+++ + +.+.++.+++. +..... .......+.....+.|
T Consensus 204 ---~~~--~-------------------------------~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~ 240 (399)
T PRK05122 204 ---VKG--E-------------------------------RLPFRRVLGRV--WPYGMG-----LALASIGFGTIATFIT 240 (399)
T ss_pred ---CCc--c-------------------------------chhHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHH
Confidence 000 0 00011111110 111111 1111122334456677
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHH
Q 010433 311 VIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 390 (511)
Q Consensus 311 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
.++++.|++ +.+.......++.+++.++.+++.||+++|+.+..+..+..++...+... ...+..
T Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 305 (399)
T PRK05122 241 LYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PSPWMA 305 (399)
T ss_pred HHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------ccHHHH
Confidence 777766663 44566677788889999999999999999998877766666655444332 112333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q 010433 391 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFI 470 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (511)
+....+.+.+.+..++.. .....|..|++.|+++.|+.+....++..+++.+.+.+.+..++...+...+++.+++.+.
T Consensus 306 ~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (399)
T PRK05122 306 LIGAALTGFGFSLVFPAL-GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLAL 384 (399)
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 344445555554444332 2334578899999999999999999999999999999999888766666665555555555
Q ss_pred HhccccCCC
Q 010433 471 YFFLPETKQ 479 (511)
Q Consensus 471 ~~~~~~~~~ 479 (511)
....+++++
T Consensus 385 ~~~~~~~~~ 393 (399)
T PRK05122 385 TWLLYRRAP 393 (399)
T ss_pred HHHhccccc
Confidence 555554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=261.15 Aligned_cols=359 Identities=13% Similarity=0.090 Sum_probs=251.2
Q ss_pred HHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 010433 34 AMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR 113 (511)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 113 (511)
+++.+..++......+. +|.+.+++ |++.++.|++.+++.+++.++++++|+++||+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~--l~~~~~~~------------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r 68 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGV--LTELAHDV------------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK 68 (382)
T ss_pred HHHHHHHHhhHHHHHhC--hHHHHHHc------------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 44556666666565555 68888887 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010433 114 ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (511)
Q Consensus 114 ~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~ 193 (511)
+++..+.++.+++.++++++++++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..++++++.
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 69 HILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT 148 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred hhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccC
Q 010433 194 GTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKN 272 (511)
Q Consensus 194 ~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (511)
.... ..+||+.|++.++..++..+. .+++||.++ +.+. + . ++
T Consensus 149 ~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~-~-----------------~---~~---------- 191 (382)
T PRK10091 149 YLSQ--EFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKG-G-----------------L---RE---------- 191 (382)
T ss_pred HHhh--hccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cccc-C-----------------H---HH----------
Confidence 5443 458999999998877766543 455777542 0000 0 0 00
Q ss_pred ChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 010433 273 PFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (511)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 351 (511)
. .+.++++..+... ...+...........+.+.++ +..|+++.+.+......+++.++++++.+++.||+++|
T Consensus 192 ~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~ 265 (382)
T PRK10091 192 Q-FHFLRSPAPWLIF-----AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL 265 (382)
T ss_pred H-HHHhcChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence 0 0112222211111 111122222223334445455 45899999999999999999999999999999999999
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHH
Q 010433 352 AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVC 431 (511)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 431 (511)
+....+..+..++.+++.... +..+.......+...+......+.......+..|++.++.+ ..+.
T Consensus 266 ~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 331 (382)
T PRK10091 266 RIAAVTDFIIVLALLMLFFFG------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQI 331 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHH
Confidence 988877766666654443321 11122223333333332222223322333444455555544 3467
Q ss_pred HHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHH
Q 010433 432 NNLLFTALIAQAFLAALCH-LKFGIFLVFGGLVVIMSAF 469 (511)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 469 (511)
...+|..++|.+.|.+.+. .++...+...++..++.+.
T Consensus 332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 7889999999999999986 4565555554444443333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=270.04 Aligned_cols=386 Identities=16% Similarity=0.147 Sum_probs=264.4
Q ss_pred hhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH
Q 010433 39 LFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118 (511)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~ 118 (511)
+..+|...++.. .|.+.+++ |++..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus 5 ~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 64 (399)
T TIGR00893 5 INYLDRANLSFA--APMLQEDL------------------GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV 64 (399)
T ss_pred HHHHHHHhhhHh--HHHHHHhh------------------CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHH
Confidence 444555555555 56676666 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010433 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI 198 (511)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~ 198 (511)
+.++.+++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.+++....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~- 143 (399)
T TIGR00893 65 FIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI- 143 (399)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999665443
Q ss_pred CCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHh
Q 010433 199 HPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNL 277 (511)
Q Consensus 199 ~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (511)
..+||+.|++.+++.++..+. .++.||+|+... ..+.++.....++...+. +.+++.+..+...++.
T Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 211 (399)
T TIGR00893 144 -HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLLAEQ----------QGKGPSTPKKYQIKEL 211 (399)
T ss_pred -hCCchHHHHHHHHHHHHHHHHhhheecCCCCccc-cCCHHHHhhcchhhcccc----------ccccccCCCccchHHH
Confidence 347999999988887776554 445666653110 001111100000000000 0000111112234455
Q ss_pred hccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 010433 278 FKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 356 (511)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 356 (511)
++++..+.. . +..+...........+.|.++++ +|.++.+.+.......++.+++.++.+++.||++||+....
T Consensus 212 ~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 286 (399)
T TIGR00893 212 LKDRRVWGL----A-LGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286 (399)
T ss_pred hcCHHHHHH----H-HHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 544432222 1 33444455556677788888754 79998999999999999999999999999999998862111
Q ss_pred -hhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHH
Q 010433 357 -AGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL 435 (511)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 435 (511)
......++.+......... . .....+..+....+... .....+....+..|..|++.|+++.|+.+....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 358 (399)
T TIGR00893 287 FARKTAIIAGLVLSLLMFAT-N-----YVNIPYAALALVALGFF--GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNL 358 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHh-c-----cchhHHHHHHHHHHHHh--chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHH
Confidence 1111111111111111000 0 00112222222222222 2224566677778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Q 010433 436 FTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFI 470 (511)
Q Consensus 436 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 470 (511)
++.++|.+.+.+.+..+ +...+.+.++..+.+.+.
T Consensus 359 g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 359 GGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999877 665555554444444433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=275.12 Aligned_cols=422 Identities=12% Similarity=0.073 Sum_probs=274.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhh----hhhhccccccccccccCCchHHHHHHHHHHHHHH
Q 010433 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPK----VYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGL 97 (511)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~ 97 (511)
..++++.+..++.++..+...|...++.+ .+.+.++-..+ ...++..+...+++++++..+.|++.+++.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLT--MVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEE--EEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence 44556677777777777888888888777 45554421100 0000111112233679999999999999999999
Q ss_pred HHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHH
Q 010433 98 VSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQ 175 (511)
Q Consensus 98 i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 175 (511)
+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999887655 558889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHHhc-cccCChhHHHhcCCHHHHHHHHHHHhCCCcc
Q 010433 176 LFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGL-FLPETPNSLVEQGKLDEARKVLEKVRGTANV 253 (511)
Q Consensus 176 ~~~~~~~~G~~~g~~l~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (511)
+...+..+|.++++++++.+. +. .+||+.|++.++++++..+.++ +.+|+|+... +.++++. +..++.
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~--~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~-~~i~~~------ 240 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLC--ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK-KYINSS------ 240 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH-HHHHhh------
Confidence 999999999999999966544 33 3899999999998877766544 4567664210 1111111 100000
Q ss_pred hHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH
Q 010433 254 DAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (511)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 332 (511)
.+++.++.+.+.+++++++++..+... +..+......+.+.+|+|.++++ +|++..+.++......+
T Consensus 241 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 241 -------LQGQKGSTRQSLPIKAIPKSLPVWAIW-----FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred -------cccccCCCCCCCCHHHHhcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 000000011123466666655433322 34455555667788899999855 89999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHH---hhhHHHHHHHHHHHHHH-HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccc
Q 010433 333 ALCIAALISMAFVDKFGRRAFFL---EAGTEMIIYMVIVAITL-ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPL 408 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (511)
+.+++.++.|+++||+++|+... .......++........ ..... ....+..+....+.+.+.+... +.
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~-~~ 381 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL------SAAFYLTIIILTLANAVSSGPL-AG 381 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc------CCchHHHHHHHHHHHHHhhhhh-hh
Confidence 99999999999999976442211 01111111111111100 00000 0111222222333333222222 22
Q ss_pred cceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-hhhHHHHHHHHHHHHHHHHhccc
Q 010433 409 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL--K-FGIFLVFGGLVVIMSAFIYFFLP 475 (511)
Q Consensus 409 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
......|..| +.+|.+.|+.+..+.+++.++|.+.+.+.+.. + +...+.+.++..+++.+......
T Consensus 382 ~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 382 VLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred hhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 2334446666 48999999999999999999999999887653 2 44444444444444444444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=261.69 Aligned_cols=373 Identities=13% Similarity=0.074 Sum_probs=263.1
Q ss_pred HHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 010433 28 IACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVT 107 (511)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 107 (511)
...+.++++.++.+.+...++.. +|++.+++ |+|.++.+++.+.+.+++.++++++|++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~ 66 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMV--MGPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLNAWLM 66 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777888887777766 78888888 88999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHH
Q 010433 108 RSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILV 187 (511)
Q Consensus 108 dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 187 (511)
||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..+
T Consensus 67 dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 146 (394)
T PRK03699 67 EIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 010433 188 ANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA 267 (511)
Q Consensus 188 g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (511)
+|.+...... +..+||+.|.+.+++.++..+..++ .+.|+. ++++.+
T Consensus 147 ~~~~~~~l~~-~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~----------------------------- 193 (394)
T PRK03699 147 FPIIAAYLLA-RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAPK----------------------------- 193 (394)
T ss_pred HHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCcc-----------------------------
Confidence 9888544332 2358999999888877665444332 222210 000000
Q ss_pred HhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 268 RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVD 346 (511)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 346 (511)
+.+.. .+....+...... +..+......+.+..|.|.+++ ++|+++.+++.......++..+++++.+++.|
T Consensus 194 -~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 266 (394)
T PRK03699 194 -ADKPV----AKEKWGIGVLFLA--IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR 266 (394)
T ss_pred -ccCcc----ccccCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0111111111111 2333344445667789999995 57999999999999999999999999999999
Q ss_pred hcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHH
Q 010433 347 KFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQ 426 (511)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 426 (511)
|+++|+.+.....+..+.+.++... .+ .+......+..+.+.+..+ +....+..|..| +.++...
T Consensus 267 r~~~~~~l~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~ 331 (394)
T PRK03699 267 FFDLQRILTVLAGLALVLMYLFVNT------------DD-PSHLLYAILGLGFFSSAIY-TTIITLGSQQTK-VASPKLV 331 (394)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHc------------CC-chHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-CCCHHHH
Confidence 9999988776555444433322211 11 1222223333333333222 222334445555 3466778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccc
Q 010433 427 SVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLP 475 (511)
Q Consensus 427 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
+.......+|..++|.+.|.+.+..++...+....++.+++.+......
T Consensus 332 g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 332 NFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 8888889999999999999999988866555544444544444444443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-32 Score=260.71 Aligned_cols=379 Identities=14% Similarity=0.101 Sum_probs=272.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 010433 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (511)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 101 (511)
.+++.++..+.+.++.+...++...+.+. +|.+.+++ |++..+.++..+.+.+++.++++
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~ 66 (406)
T PRK15402 7 LGRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDF------------------NAGAEWVPTSMTAYLAGGMFLQW 66 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777778877887777665 68888888 88999999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHH
Q 010433 102 GASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTT 181 (511)
Q Consensus 102 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 181 (511)
+.|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+++++.....
T Consensus 67 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 146 (406)
T PRK15402 67 LLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVA 146 (406)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHH
Q 010433 182 CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDL 260 (511)
Q Consensus 182 ~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (511)
.+|..++|.++..... ..+||+.|++.++..++..+. ....||+++.. +++. +.
T Consensus 147 ~~~~~~g~~i~~~l~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------~~--- 201 (406)
T PRK15402 147 LLAPLLGPLVGAALIH--VLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKL-----------------SL--- 201 (406)
T ss_pred HHHHHHHHHHHHHHHH--ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccc-----------------cH---
Confidence 8999999999655543 358999999988887766554 34567764210 0000 00
Q ss_pred HHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHH
Q 010433 261 IDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAAL 339 (511)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 339 (511)
++..++.++.++++..+..... .+...........+.|.++ +.+|+++.+.+.......++.+++.+
T Consensus 202 -------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~ 269 (406)
T PRK15402 202 -------KELGRDYKLVLKNRRFVAGALA-----LGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNL 269 (406)
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0001123445555543332221 1112222234445567776 45899988888888878888999999
Q ss_pred HHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCc
Q 010433 340 ISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL 419 (511)
Q Consensus 340 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 419 (511)
+.+++.||+++|+....+.....++...+...... .....+.......+.+.+.+....+. .... ...++
T Consensus 270 ~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~-~~~~~ 339 (406)
T PRK15402 270 TLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAFGIGLANAGL-YRLT-LFSSD 339 (406)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHHHHHHHhhhH-HHHH-hhhcc
Confidence 99999999999998887777666666655543211 01112223344444555544433332 2222 22345
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 010433 420 EMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 467 (511)
Q Consensus 420 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (511)
+.+++..++.+....++..+++.+.+.+.+..+...+....+++.++.
T Consensus 340 ~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 340 VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 789999999999999999999999999888776554444444333333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=255.37 Aligned_cols=344 Identities=14% Similarity=0.077 Sum_probs=237.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~ 153 (511)
|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++.+++ ++++.+++.|++.|++ +..
T Consensus 66 ~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~ 144 (462)
T PRK15034 66 NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GAN 144 (462)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHh
Confidence 9999999999999999999999999999999999999999999999999999987 8999999999999998 778
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc-----c-----------cCCccchHHHHHHHHHHHHH
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE-----K-----------IHPWGWRLSLGLATVPATLM 217 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~-----~-----------~~~~~wr~~f~~~~~~~~~~ 217 (511)
++.....+++|+|+++||+++|+.....++|..+++++..... . .+..+||..+++..++.++.
T Consensus 145 f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~ 224 (462)
T PRK15034 145 FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIA 224 (462)
T ss_pred HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999997666666665554432111 0 01245888888888877776
Q ss_pred HHHhc-cccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHH
Q 010433 218 FVGGL-FLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAF 296 (511)
Q Consensus 218 ~~~~~-~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
.++.+ ++++.|. .+. ......+.+|++..|... +.++
T Consensus 225 ~i~~~~~~~~~~~---~~~----------------------------------~~~~~~~vlk~~~~Wlls-----lly~ 262 (462)
T PRK15034 225 TIAAWSGMNDIAS---SRA----------------------------------SIADQLPVLQRLHLWLLS-----LLYL 262 (462)
T ss_pred HHHHHHhCCCccc---ccc----------------------------------CHHHHHHHhCCCchhHHH-----HHHH
Confidence 55543 4444331 000 011123455666544333 3455
Q ss_pred hhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhc
Q 010433 297 QQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF 376 (511)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
+.+.++.++.+++|++.++ .++............+...+.++++|+++||+|+++.+..+.+.+.+......... +
T Consensus 263 ~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p- 338 (462)
T PRK15034 263 ATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--P- 338 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--c-
Confidence 6666777788899988866 33333333334455678888999999999999999998888776666554433321 0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCc---------------------cchhhHHHHHHHHHHH
Q 010433 377 GEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL---------------------EMRSAGQSVVVCNNLL 435 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~g~~~~~~~~ 435 (511)
. ......+.............+.+..++ +-++.+.+|+ ++.|.+.|++...+.+
T Consensus 339 -~---~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~ 413 (462)
T PRK15034 339 -G---TGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV 413 (462)
T ss_pred -c---ccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence 0 001112233333333334444444344 3344566664 1467889999999999
Q ss_pred HHHHHHHHHHHHHHhcc-hhh-HHHHHHHHHHHHHHHHhcc
Q 010433 436 FTALIAQAFLAALCHLK-FGI-FLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 436 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 474 (511)
|+++.|.+++...+..+ +.. +..+.+..+++..+.++++
T Consensus 414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988776 333 4444444444444555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=266.55 Aligned_cols=392 Identities=20% Similarity=0.173 Sum_probs=283.6
Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhh
Q 010433 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 75 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
.+.++.+.....+..+++++|.++|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhc
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~ 234 (511)
.....+++|++++++|+.+..+ ......+..+++++++.... +||+.+++..++.++.++.+++.||+|||+..+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 9999999999999999999999 66666666666666444443 799999999999998877777778999999999
Q ss_pred CCHHHHHHHHHHHhCCC---cch-HHHHHHHHHH---HHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHh
Q 010433 235 GKLDEARKVLEKVRGTA---NVD-AEFSDLIDAS---NAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
++.+++.+.+++..+.+ ... ...+...... ....+++..+.++++.+..+...+... +..+.....+++
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-~~~~~~~~~y~g--- 340 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLL-FIWFVFSLVYYG--- 340 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHH-HHHHHHhHHHHh---
Confidence 99999999998876543 111 1111111111 111112345677777764444333332 222211111111
Q ss_pred cHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010433 308 YAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIG 387 (511)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
++.....+|.+ ........+..........+...|++|||.....+..+..++++........ ...
T Consensus 341 -l~~~~~~lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 406 (521)
T KOG0255|consen 341 -LSLNVSGLGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD----------LGG 406 (521)
T ss_pred -hhhhhhhcCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc----------chh
Confidence 11112233333 3444555556788888888999999999999999888888888887776421 111
Q ss_pred HHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 010433 388 IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 467 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (511)
+...+...+..++.+.++... +.+.+|++|+..|..+.+..+....++++++|.+...............++....+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLG 485 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Confidence 233444444444444455455 6777899999999999999999999999999988765544222222222455666666
Q ss_pred HHHHhccccCCCCCHHHHHHHhc
Q 010433 468 AFIYFFLPETKQVPIEEIYLLFE 490 (511)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~ 490 (511)
.+...++||++++++.+..++.+
T Consensus 486 ~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 486 LLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHhcCcccCCCCCchhHHHHH
Confidence 66768999999998876555544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=270.69 Aligned_cols=354 Identities=15% Similarity=0.097 Sum_probs=235.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLL-GRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~ 157 (511)
|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|++.|++.+...+..
T Consensus 50 g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~ 129 (455)
T TIGR00892 50 QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPS 129 (455)
T ss_pred CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHH
Confidence 889999999999999999999999999999999999999999999999999999999998875 5799999999877888
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc-cCChhHHHhcCC
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLVEQGK 236 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~ 236 (511)
..++.++++ ++|+++.++.+.+..+|..++|++++.+.. .+|||+.|++.+++.++..+..+++ ++.+.. ++.+
T Consensus 130 ~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~--~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~ 204 (455)
T TIGR00892 130 LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE--SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSK 204 (455)
T ss_pred HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccc
Confidence 888999995 789999999999999999999998655443 4589999999998877655443333 322210 0000
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHc
Q 010433 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL 316 (511)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (511)
++.+ +.....+..+.. .. ....++.. +....+.++++..+... ...+...........++|.+.++.
T Consensus 205 -~~~~---~~~~~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~l~~~~~~~ 271 (455)
T TIGR00892 205 -SKSK---EGLPPDGSTKKL-SK--KSTAEKIN-RFLDFSLFTHRGFLVYL-----SGNVIMFLGFFAPIIFLVPYAKDK 271 (455)
T ss_pred -cccc---ccCCCCCccccc-cc--cchhhhhh-hhcchHHhcCchHHHHH-----HHHHHHHHHccchHHHHHHHHHHc
Confidence 0000 000000000000 00 00000000 00011344554433222 222223334445566788888889
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010433 317 GFGSGAALYSSVITGIALCIAALISMAFVDKF--GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 394 (511)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
|++..+++...+..+++.++++++.+++.||. ++|+...........+...+.... ....+..++..
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-----------~~~~~~~~i~~ 340 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-----------AGDYTGLVIYC 340 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-----------hchHHHHHHHH
Confidence 99999999999999999999999999999973 333333322222111111111111 01123334444
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHH
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGL 462 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 462 (511)
.+.+.+.+... +....++.|.+|++.++++.|+.+....+++.++|.+.|.+.+..+ +...+.+.++
T Consensus 341 ~~~G~~~g~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~ 408 (455)
T TIGR00892 341 IFFGLSFGSVG-ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS 408 (455)
T ss_pred HHHHHHhchHH-HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence 45555544333 3345556788999999999999999999999999999999988764 5444444333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=266.42 Aligned_cols=358 Identities=13% Similarity=0.053 Sum_probs=257.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~ 153 (511)
+.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..++ .++++.+++.|++.|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999999988888777665543 467899999999999999988
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHh
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE 233 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~ 233 (511)
.+...+++.|++|+++|+++.++.....++|..+||.+++.+... .+||+.|++.++..++..+..+.+||+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 202 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA--GGVAWNYGLAAAGTFITLLPLLRLPALPPP--- 202 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhCCCCCCC---
Confidence 899999999999999999999999999999999999997665432 479999998887777666666667775421
Q ss_pred cCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH
Q 010433 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 313 (511)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (511)
++++++ ..+ +.++.++..++++..+...+... ... .......+.|.+.
T Consensus 203 ~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~p~~~ 250 (417)
T PRK10489 203 PQPREH----------------PLR----------SLLAGFRFLLASPVVGGIALLGG-----LLT-MASAVRVLYPALA 250 (417)
T ss_pred Cccccc----------------chH----------HHHHHHHHHHcChHHHHHHHHHH-----HHH-HHHhHHHhhHHHH
Confidence 000000 000 00112233444443322222111 111 1234556778888
Q ss_pred HH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHH
Q 010433 314 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 392 (511)
Q Consensus 314 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
++ +|.++...++.....+++.+++.++.+++.||.++++.+..+..+..++.+++... ...+...+
T Consensus 251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 317 (417)
T PRK10489 251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMWILAVL 317 (417)
T ss_pred HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chHHHHHH
Confidence 77 89999999999999999999999999999999777777666665555554433221 11222333
Q ss_pred HHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHHHHH
Q 010433 393 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG-IFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 471 (511)
..++++.+.+. ..+....++.|..|++.|++++|+.+....++..+++.+.|.+.+..+.. .+...+++..+++++..
T Consensus 318 ~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 396 (417)
T PRK10489 318 CLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLL 396 (417)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 33334433322 22344556678999999999999999999999999999999999988754 44455555566666677
Q ss_pred hccccCCCCCHHHHHH
Q 010433 472 FFLPETKQVPIEEIYL 487 (511)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (511)
..+++.|+++.+|.++
T Consensus 397 ~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 397 LVLGELRRFRQTPPEV 412 (417)
T ss_pred HhcccccccccccccC
Confidence 7778777766655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=254.16 Aligned_cols=332 Identities=11% Similarity=0.099 Sum_probs=232.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC--------AVHISMLLLGRIFLGMGI 150 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~ 150 (511)
|+|..+.|++.+++.+++.++++++|+++||+|||+++..+.++..++.+.... .++++.++++|+++|++.
T Consensus 47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (392)
T PRK12382 47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE 126 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999998887776543322 368899999999999999
Q ss_pred hhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhH
Q 010433 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230 (511)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 230 (511)
+...+...+++.|++|+++|++++++.+.+...|.+++|+++..... ..|||..+.+..+..++........||.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 203 (392)
T PRK12382 127 SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS--HFGFAALALTTMVLPLLAWAFNGTVRKVPA- 203 (392)
T ss_pred HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHHHHHHHHHhccCCCC-
Confidence 99999999999999999999999999999999999999999655443 458998877665554433332223343321
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHH
Q 010433 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (511)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
+++ + +.+.++..+.. +...... +...........+.|
T Consensus 204 ---~~~--~-------------------------------~~~~~~~~~~~--~~~~~~~-----~l~~~~~~~~~~~~~ 240 (392)
T PRK12382 204 ---HAG--E-------------------------------RPSLWSVVGLI--WKPGLGL-----ALQGVGFAVIGTFVS 240 (392)
T ss_pred ---Ccc--c-------------------------------CchHHHHHHHH--HHhHHHH-----HHHHHHHhHHHHHHH
Confidence 000 0 00011111100 0001111 111122334556677
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHH
Q 010433 311 VIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 390 (511)
Q Consensus 311 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
.++++.|++. .+......+++.+++++..+++.||+++|+.+..+..+..++.+++... ...+..
T Consensus 241 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 305 (392)
T PRK12382 241 LYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------------PTAWVA 305 (392)
T ss_pred HHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------------ccHHHH
Confidence 7777777653 4555666778888999999999999999988887776666655443322 112333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q 010433 391 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFI 470 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (511)
.....+.+.+.+...+. ......|..|+++|+++.|+.+....++..++|.+.+.+.++.++...+.+.+++.+.+.+.
T Consensus 306 ~~~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 306 LAGAALTGAGCSLIFPA-LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33444444444433333 23444688899999999999999999999999999999999888776666665555555544
Q ss_pred Hh
Q 010433 471 YF 472 (511)
Q Consensus 471 ~~ 472 (511)
.+
T Consensus 385 ~~ 386 (392)
T PRK12382 385 TI 386 (392)
T ss_pred HH
Confidence 43
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=250.52 Aligned_cols=354 Identities=14% Similarity=0.078 Sum_probs=250.3
Q ss_pred HHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 010433 34 AMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR 113 (511)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 113 (511)
.++.++.+.+.+..++. +|.+.+++ |.|..+.|++.+.+.++..+++++.|+++||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~--lp~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k 71 (381)
T PRK03633 12 LCGLLLLTLAIAVLNTL--VPLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN 71 (381)
T ss_pred HHHHHHHHHhhhhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35666777777777766 78888887 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010433 114 ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (511)
Q Consensus 114 ~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~ 193 (511)
+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++.+..+.++|..+|+.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 72 RSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999966
Q ss_pred hhcccCCccchHHHHHHHHHHHHHH-HHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccC
Q 010433 194 GTEKIHPWGWRLSLGLATVPATLMF-VGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKN 272 (511)
Q Consensus 194 ~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (511)
..... ..|+..+ ..+....... +.....+++++ + ++++.
T Consensus 152 ~l~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~-------------------------------~~~~~ 191 (381)
T PRK03633 152 KVSTE--LMSVLPW-VTGLVLAAILPLLFTRILNQQA------E-------------------------------NHDST 191 (381)
T ss_pred ccccc--ccchHHH-HHHHHHHHHHHHHHhcccCCCC------C-------------------------------CCCCC
Confidence 55432 1222222 2222211111 11212222110 0 00012
Q ss_pred ChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 010433 273 PFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 352 (511)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 352 (511)
+..+.++++..+..... .+...........+.|.++++.|.++.+.+.......++.+++++..+++.||+++|+
T Consensus 192 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 266 (381)
T PRK03633 192 SIWPMLKLRQARLGVNG-----CIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL 266 (381)
T ss_pred CHHHHHHhcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence 23344555443322211 1111222334456789888888999999999899999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHH
Q 010433 353 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCN 432 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 432 (511)
.+..+.....++.+.+... . . ......+.+.+.. ...|.....+.|..|++.++...+..+..
T Consensus 267 ~l~~~~~~~~~~~~~~~~~-------------~--~-~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (381)
T PRK03633 267 VLRVQVFVVILGSIAMLSQ-------------A--A-MAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLS 329 (381)
T ss_pred HHHHHHHHHHHHHHHHhhh-------------H--H-HHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 8877766655544333210 0 1 1112222222222 22344455556888888778788888888
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 010433 433 NLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 469 (511)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (511)
.++|+.++|.+.|.+.++.++...+...+.+.+...+
T Consensus 330 ~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 330 YTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 8999999999999999988866555554444444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=254.17 Aligned_cols=375 Identities=16% Similarity=0.176 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhh
Q 010433 24 SYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGA 103 (511)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 103 (511)
...+..+.+.++.+++...|...+..+ .+.+.+.| |++++..|++.+.+.+.+.+++|+.
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv--~~~v~~~f------------------ni~~s~~Gll~~vf~v~~~i~sPl~ 88 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGV--LKEVQTYF------------------NISDSELGLLQTVFIVVFMIASPLF 88 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHhc------------------CCCchhccchhHHHHHHHHHHHHHH
Confidence 344555666677888999999876554 45555555 9999999999999999999999999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHH
Q 010433 104 SYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183 (511)
Q Consensus 104 g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 183 (511)
|+++|||+||+++.+|.++|.++.++++++..||+++++|.+.|+|.+...|.++++++|.+|.++|++++++++.+..+
T Consensus 89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv 168 (493)
T KOG1330|consen 89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV 168 (493)
T ss_pred HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHH
Q 010433 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 262 (511)
Q Consensus 184 G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (511)
|..+|.+.+........+ |||.|++.++++++..++ .++.+|.+| +.+++.. +++....
T Consensus 169 GsglG~vvgs~va~~~~~-Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~-------~~~~~~~------- 228 (493)
T KOG1330|consen 169 GSGLGYVVGSVVASLTFW-WRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVD-------GENKMVK------- 228 (493)
T ss_pred ccceeEEeeeeeccCccc-eEEEEEeehHHHHHHHHHHHhhccCccc-----ccccccc-------cCCcCCC-------
Confidence 999999987666665543 999999999999998666 556676542 1111110 0000000
Q ss_pred HHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH----HHcCCCChhHHHHHHHHHHHHHHHH
Q 010433 263 ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF----QSLGFGSGAALYSSVITGIALCIAA 338 (511)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~ 338 (511)
......++.+.+.+.+......+ ...........+.+|.|.+. +-.|.+..+..++..+...++.+|.
T Consensus 229 ---~~ts~~kDl~~l~~~~v~v~~sl-----~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGv 300 (493)
T KOG1330|consen 229 ---PFTSVWKDLKVLAKIKVFVLSSL-----GIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGV 300 (493)
T ss_pred ---CccchHHHHHHHHccCceeeehH-----HHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhh
Confidence 00000111222233233222222 12222222334555555554 2356777777778888888999999
Q ss_pred HHHHHHHhhcC----ChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeec
Q 010433 339 LISMAFVDKFG----RRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPS 414 (511)
Q Consensus 339 ~~~g~l~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (511)
+.+|.++||+. +.......-+.++.+............. ......+..+++..+........+.+..... .
T Consensus 301 l~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~----~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~-l 375 (493)
T KOG1330|consen 301 LFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA----FTSSSMIFGLILFLVGETISWFNWATNNPIF-L 375 (493)
T ss_pred eehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhccccccccee-e
Confidence 99999999943 2122222222222222211111111000 0112223333333333333333444444444 6
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Q 010433 415 ELFPLEMRSAGQSVVVCNNLLFTALIAQ-AFLAALCHL 451 (511)
Q Consensus 415 ~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 451 (511)
|+.|++.|.+++++...+..+.+-.+++ +.|.+.++.
T Consensus 376 ~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 376 EVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred EecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 9999999999999988777665555554 888887754
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=265.20 Aligned_cols=383 Identities=16% Similarity=0.147 Sum_probs=274.5
Q ss_pred HHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010433 30 CMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS 109 (511)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 109 (511)
...++++.++..+|..+.++. +|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVA--IPTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445567778888888888766 78888887 8899999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 010433 110 RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVAN 189 (511)
Q Consensus 110 ~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 189 (511)
+|||+.+..+.++.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHH--------H---HHhCCCcc--hH
Q 010433 190 LINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVL--------E---KVRGTANV--DA 255 (511)
Q Consensus 190 ~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~--------~---~~~~~~~~--~~ 255 (511)
.+++... +..+||+.|++.++++++..+. .+++||+++. ++++.+...... . ......+. +.
T Consensus 144 ~~~~~l~--~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (485)
T TIGR00711 144 TLGGWII--ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSN 219 (485)
T ss_pred ccHhHhc--cCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCch
Confidence 9965544 4568999999988877766544 4456664421 111111111000 0 00001110 00
Q ss_pred HHHHH--------HHHHHHHHhccCC--hHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHH
Q 010433 256 EFSDL--------IDASNAARAIKNP--FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAAL 324 (511)
Q Consensus 256 ~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 324 (511)
+.... ......+...+++ ..+.++++..+...+ ..+......+...++.|.++++ +|+++.+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g 294 (485)
T TIGR00711 220 EILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCV-----YMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG 294 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00000 0000001111122 234556555444322 2333334445566788888866 799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 010433 325 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRS 404 (511)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (511)
....+..++.+++.++.+++.||++||+.+..+..+..++...+.... .+....+.......+.+.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~g~g~~~~ 365 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF---------TPDTPFLAIALPQFIRGFGMGCF 365 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC---------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988777766666555443211 01112223333344555555544
Q ss_pred cccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 405 WGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 405 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
..+..... .+..|++.++++.|+.+....+++.+++.+.+.+.++.
T Consensus 366 ~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 366 FMPLTTIA-LSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHH-HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333 47789999999999999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=261.21 Aligned_cols=380 Identities=15% Similarity=0.167 Sum_probs=264.6
Q ss_pred HHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcch
Q 010433 33 AAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 112 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 112 (511)
++++.++..++...+++. +|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTA--LPSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHhHHHHHHH--HHHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 345567777777776665 78888887 8899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 010433 113 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (511)
Q Consensus 113 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 192 (511)
|++++.+.++.+++.+++.++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHH-------H--HhCCCc--chH-HHHH
Q 010433 193 YGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLE-------K--VRGTAN--VDA-EFSD 259 (511)
Q Consensus 193 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~-------~--~~~~~~--~~~-~~~~ 259 (511)
+.+.. ..+||+.|++..+...+..+. ....|+.+. .+.+.+....... . ...... ... ....
T Consensus 155 g~l~~--~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471)
T PRK10504 155 GLLVE--YASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAG 229 (471)
T ss_pred HHHHh--hccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHH
Confidence 65544 358999999988776665544 334454431 1112111111000 0 000000 000 0000
Q ss_pred H--------HHHHHHHHhccCC--hHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHH
Q 010433 260 L--------IDASNAARAIKNP--FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSV 328 (511)
Q Consensus 260 ~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 328 (511)
. .....+++..+.+ ..++++++.+.... ...+...........+.|++++. .|.++.++++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 230 LVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGL-----AGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0 0000001111111 12355655544332 22233333445566678888874 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccc
Q 010433 329 ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPL 408 (511)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (511)
+..++.+++.++.+++.||+++|+.+..+..+..+...++.... .....+.......+.+.+.+....+.
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFSSM 374 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 98899999999999999999999988877776665554443321 01112222222333334444334333
Q ss_pred cceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010433 409 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 453 (511)
Q Consensus 409 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (511)
.....+..|++.++.++|+.++...++..+++.+.+.+.+..++
T Consensus 375 -~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 375 -NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred -HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34446788999999999999999999999999999988776654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=254.26 Aligned_cols=327 Identities=14% Similarity=0.040 Sum_probs=243.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-----HISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~ 153 (511)
+.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++..+.+ +++.+++.|+++|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999888888 9999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhcc--ccCChhHH
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF--LPETPNSL 231 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~l 231 (511)
.+...+++.|++|+++|++++++.+.+..+|.+++|.+++.... ..+||+.|++.++..++..+..+. .||+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 185 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA--TLGIKWAIWVDAVGFAISALLIVSVRIPELAA-- 185 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHhcccccCCC--
Confidence 99999999999999999999999999999999999999766543 348999999888776665444333 333321
Q ss_pred HhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHH-hcHH
Q 010433 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL-FYAP 310 (511)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 310 (511)
+++++. ++ + ..++.++..+..++++..+...... +.......... .+.|
T Consensus 186 --~~~~~~--------------~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 186 --SEIQAL--------------SN---A------VLRDTREGIKFVLKNPLLRTLLLLA-----LLFNLVFAPAIVALFP 235 (365)
T ss_pred --cccccc--------------ch---h------HHHHHHhHHHHHHcCcHHHHHHHHH-----HHHHHHHHHHHHHHhH
Confidence 000000 00 0 0001112344555555444333222 22222222333 6778
Q ss_pred HHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHH
Q 010433 311 VIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 389 (511)
Q Consensus 311 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.+.++ +|.++.+.+.......++.+++.++.+++.||.+||+....+..+..+....+.... ...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 303 (365)
T TIGR00900 236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP------------PNFPL 303 (365)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc------------hhHHH
Confidence 88876 899999999999999999999999999999999999888776555555544443321 11233
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 390 LVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+..++.+.+.+... +....+..|..|++.|+++.|+.+....++..+++.+.|.+.|..|
T Consensus 304 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 304 FLVLWFAIGVGYGPIN-VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444455555544333 4445666799999999999999999999999999999999888643
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=252.02 Aligned_cols=343 Identities=14% Similarity=0.150 Sum_probs=248.2
Q ss_pred hhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH
Q 010433 39 LFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118 (511)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~ 118 (511)
+.......+.+. +|.+.+++ |.++.+.+++.+++.++..++++++|+++||+|||+++..
T Consensus 16 ~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 75 (385)
T TIGR00710 16 LGPLGIDMYLPA--FPEIAADL------------------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL 75 (385)
T ss_pred HHHHHHHHhccc--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence 334444455444 67777777 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010433 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI 198 (511)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~ 198 (511)
+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~- 154 (385)
T TIGR00710 76 GLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV- 154 (385)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999665443
Q ss_pred CCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHh
Q 010433 199 HPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNL 277 (511)
Q Consensus 199 ~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (511)
..+||+.|++.++..++..+. .++.||+++. +++ ++ .+ +..+..++.
T Consensus 155 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-----------------~~----------~~~~~~~~~ 202 (385)
T TIGR00710 155 -WLSWHAIFAFLSLAGILLSALIFFILPETLPY---EAR-IQ-----------------IS----------TYFETFLLL 202 (385)
T ss_pred -HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---ccc-CC-----------------HH----------HHHHHHHHH
Confidence 358999999988877766544 4456765421 000 00 00 001123344
Q ss_pred hccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 010433 278 FKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 356 (511)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 356 (511)
++++..+...+. .............+.|.+++ ++|+++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus 203 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 277 (385)
T TIGR00710 203 LKSKMFWGYALI-----YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM 277 (385)
T ss_pred HcCchhHHHHHH-----HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 555544333221 22222333455666777775 689999999999999999999999999999999999998887
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHH
Q 010433 357 AGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLF 436 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 436 (511)
+..+..++.+++...... .............+.+.+.+... +.......|..| +.++++.++.+.....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 347 (385)
T TIGR00710 278 GLILFAVSAVLLEITAIL--------GLGSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP-HVAGTASALFGTLRLVL 347 (385)
T ss_pred HHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-ccchHHHHHHHHHHHHH
Confidence 766666655554443211 00111222233333444444333 233444457766 57899999999988887
Q ss_pred HHHHHHHHHHHHH
Q 010433 437 TALIAQAFLAALC 449 (511)
Q Consensus 437 ~~~~~~~~~~~~~ 449 (511)
+.+.+++.+...+
T Consensus 348 g~i~~~~~~~~~~ 360 (385)
T TIGR00710 348 GAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHhccc
Confidence 7777777774443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=258.13 Aligned_cols=404 Identities=13% Similarity=0.044 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Q 010433 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (511)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 105 (511)
.+..+....++......+...+... .|.+. ++ |+++++.+++.+++.++..+++++.|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~-~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~G~ 83 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALA--MPYLV-EQ------------------GFSKGELGFALSAISIAYGFSKFIMGS 83 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhh--hHHHH-Hc------------------CCCHhHhHHHHHHHHHHHHHhhhccch
Confidence 3444455555556666665554433 34333 33 889999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHH
Q 010433 106 VTRSRGRRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTT 181 (511)
Q Consensus 106 l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 181 (511)
++||+|||+.+..+.++.+++.++.++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+.
T Consensus 84 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~ 163 (438)
T TIGR00712 84 VSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAH 163 (438)
T ss_pred hhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHH
Confidence 9999999999999999999998887764 467788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHH
Q 010433 182 CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDL 260 (511)
Q Consensus 182 ~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (511)
.+|..+++.+...... ...+||..|++.++++++..+ ..+++||+|+....++ .++.+ .+...+ ..++
T Consensus 164 ~~g~~~~~~l~~~~~~-~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~-~~~~- 232 (438)
T TIGR00712 164 NIGGGIPPLLVLLGMA-WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-IEEYR-------NDYPDD-YNEK- 232 (438)
T ss_pred HhHhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-chhcc-------cccccc-cccc-
Confidence 9999998877443222 124899999998888777544 4566788775321011 00000 000000 0000
Q ss_pred HHHHHHHHhccCC-hHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHH
Q 010433 261 IDASNAARAIKNP-FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAA 338 (511)
Q Consensus 261 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 338 (511)
.+.+.+.++. .+..++++..+.... ..+......+....|.|.++++ .|+++.++++...+..+..++++
T Consensus 233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~ 304 (438)
T TIGR00712 233 ---AEQELTAKEIFMQYVLPNKLLWYIAI-----ANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT 304 (438)
T ss_pred ---cccccchHHHHHHHHccCchHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHH
Confidence 0000000000 112344444333322 2222333445677789999876 69999999999999999999999
Q ss_pred HHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCC
Q 010433 339 LISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP 418 (511)
Q Consensus 339 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 418 (511)
++.+++.||+++++....+........+...... . . +....+.........+.+.. +..........|.+|
T Consensus 305 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 375 (438)
T TIGR00712 305 LLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-M--N-----PAGNPLVDMICMIVIGFLIY-GPVMLIGLHALELAP 375 (438)
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-h--c-----CCCchHHHHHHHHHHHHHHc-cHHHHHHHHHHHhcC
Confidence 9999999999644322222222221111111111 0 0 00111222222222222111 111111223468899
Q ss_pred ccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhhHHH-HHHHHHHHHHHHHhccccCC
Q 010433 419 LEMRSAGQSVVVCNNLLFT-ALIAQAFLAALCHLKFGIFLV-FGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 419 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 478 (511)
++.|+++.|+.+...++++ .++|.+.|.+.++.++...+. ..++.++..+......+|.|
T Consensus 376 ~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 376 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999998888875 678999999999887655443 44444444444555555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=255.94 Aligned_cols=287 Identities=15% Similarity=0.131 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 010433 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 104 (511)
..+.+...+++..+....|...++.+.... .+++.++...+.+++.++++++++++++++|
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a~l~g-------------------~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~ 102 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNASLSG-------------------LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSG 102 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhHHHcC-------------------CccccchhhhhhhhHHHHHHHHHHHHHhhHH
Confidence 345666666677777777877766553221 1344478899999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 105 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
.+.||++..+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.++.++|
T Consensus 103 ~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g 182 (495)
T KOG2533|consen 103 LLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLG 182 (495)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc----CCccchHHHHHHHHHHHHHHHH-hccccCChh--HHHhcCCHHHHHHHHHHHhCCCcchHHH
Q 010433 185 ILVANLINYGTEKI----HPWGWRLSLGLATVPATLMFVG-GLFLPETPN--SLVEQGKLDEARKVLEKVRGTANVDAEF 257 (511)
Q Consensus 185 ~~~g~~l~~~~~~~----~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (511)
.++|.++++....+ ...||||.|++.++++++..++ ++++|+.|. |..++++++-..+..++.......
T Consensus 183 ~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~---- 258 (495)
T KOG2533|consen 183 NIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIE---- 258 (495)
T ss_pred hHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcc----
Confidence 99999998885432 2269999999999999887655 677999986 332222222111111111110000
Q ss_pred HHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHH
Q 010433 258 SDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCI 336 (511)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 336 (511)
++.++..+++.++.+..+... +..++.....+.+.+|+|.++++ .|++..++..+..+..+++++
T Consensus 259 ---------~~~~~~~~~~a~~dp~vw~~~-----l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v 324 (495)
T KOG2533|consen 259 ---------NKFKWKGFKEALKDPGVWPFS-----LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIV 324 (495)
T ss_pred ---------cccCHHHHHHHHhchhHHHHH-----HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHH
Confidence 001123455666666655444 56666777788899999999988 679999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 010433 337 AALISMAFVDKF 348 (511)
Q Consensus 337 ~~~~~g~l~d~~ 348 (511)
+.+++|+++||+
T Consensus 325 ~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 325 GLILAGYLSDRL 336 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999999994
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=249.82 Aligned_cols=368 Identities=14% Similarity=0.118 Sum_probs=252.0
Q ss_pred HHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 010433 28 IACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVT 107 (511)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 107 (511)
..+....+..+...++...+.+. +|.+.++| +.+..+.++..+++.+++.++++++|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~--l~~i~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~ 75 (413)
T PRK15403 16 FFPMALILYDFAAYLTTDLIQPG--IINVVRDF------------------NADVSLAPASVSLYLAGGMALQWLLGPLS 75 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33344455556666777777666 78888888 88999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHH
Q 010433 108 RSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILV 187 (511)
Q Consensus 108 dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 187 (511)
||+|||+++..+.+++++++++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++
T Consensus 76 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T PRK15403 76 DRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII 155 (413)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 010433 188 ANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNA 266 (511)
Q Consensus 188 g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (511)
||++++.+. +..|||+.|++.++..++..+. ++++||+++. +++ +. + .
T Consensus 156 g~~lg~~l~--~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~-~~--------------~--~--------- 204 (413)
T PRK15403 156 GPLSGAALM--HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAV-PF--------------S--A--------- 204 (413)
T ss_pred HHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCC-CC--------------C--h---------
Confidence 999976654 3358999999998887776554 4567887531 000 00 0 0
Q ss_pred HHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 267 ARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFV 345 (511)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 345 (511)
+...+.++++++++..+...+ ..+........+..+.|.++++ +|+++.+.++.......+..++..+.+++.
T Consensus 205 -~~~~~~~~~ll~~~~~~~~~l-----~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~ 278 (413)
T PRK15403 205 -KSVLRDFRNVFRNRLFLTGAA-----TLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFV 278 (413)
T ss_pred -HHHHHHHHHHHcCHHHHHHHH-----HHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000112345555554433222 2233333445566678888866 699999999988888888888888888776
Q ss_pred hhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhH
Q 010433 346 DKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAG 425 (511)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 425 (511)
++..+++.......+..++..++....... .+..+.......+++.+.+...+.... .. ..-....+|++
T Consensus 279 ~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~--------~~~~~~~~~~~~l~~~G~~~~~p~~~~-~a-l~~~~~~~G~a 348 (413)
T PRK15403 279 KDPTEPRFIWRAVPIQLVGLALLIVGNLLW--------PHVWLWSVLGTSLYAFGIGLIFPTLFR-FT-LFSNNLPKGTV 348 (413)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHc--------cccHHHHHHHHHHHHHHHHHHhHHHHH-HH-hccCCCCCcHH
Confidence 554444433322223333333332221110 111122234444455555444433321 11 11122247899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 010433 426 QSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 462 (511)
Q Consensus 426 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (511)
.++.+.....+...++...+.+.++.....+....++
T Consensus 349 ~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 385 (413)
T PRK15403 349 SASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 9999999988888998888887666443334333333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-30 Score=248.13 Aligned_cols=350 Identities=15% Similarity=0.062 Sum_probs=234.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHH---H-hhHHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---C-AVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++. + .++++.+++.|+++|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 88999999999999999999999999999999999999999999998877653 3 2578889999999999999888
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHHHHHHHH-HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHH
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGI-LVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLV 232 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~ 232 (511)
+.....+.+++|+++|++++++.+++.++|. +++|++++.+. +..||+..++......++..+. .++.++.++. .
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI--PAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP-Q 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHHHHHHHhccCCCCCc-c
Confidence 8888889999999999999999999999997 57888854443 3346655554443333322222 3334443210 0
Q ss_pred hcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHH
Q 010433 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (511)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (511)
++++++ +.++ .++..+.+++++..+... +..+......+.+.++.|.+
T Consensus 201 ~~~~~~-----------------~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 201 HMQTRE-----------------KFSE----------LGKAATILFTNPNVLLGG-----MVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred cccCCc-----------------chhh----------HHHHHHHHHcChhHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 011133455555433222 22333444556677889999
Q ss_pred HHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHh-hhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHH
Q 010433 313 FQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE-AGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 391 (511)
Q Consensus 313 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
++++|+++.+.+.......++.+++.+..|++.||++||+.... +.....+....+...... .....+...
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~~~ 320 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAVAL 320 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHHHH
Confidence 98899999999988888999999999999999999998876532 222222222222211100 001122233
Q ss_pred HHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Q 010433 392 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (511)
+...+.+.+.+. ..+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..++...+.+.+++.+++.+..
T Consensus 321 ~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 321 IIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 333334443332 23332 23356645 6899999999999999999999999999998886555555555554444444
Q ss_pred hcc
Q 010433 472 FFL 474 (511)
Q Consensus 472 ~~~ 474 (511)
.++
T Consensus 398 ~~~ 400 (402)
T TIGR00897 398 AFI 400 (402)
T ss_pred HHh
Confidence 443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=250.63 Aligned_cols=371 Identities=13% Similarity=0.147 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Q 010433 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (511)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 105 (511)
.+......++..++.+++....+.. +|.+++++ |+++.+.|++.+.+.+++.+++++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~p~i~~~~------------------~~s~~~~gl~~~~~~~g~~i~~~~~g~ 83 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455667777777666655 68887777 899999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHH
Q 010433 106 VTRSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (511)
Q Consensus 106 l~dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (511)
++||+|||+++..+..+++++.+++ .++++++.++++|+++|++.+...+....++.|+.++++|.+.+++.+..+.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 9999999999999999999999875 4678999999999999999999999999999998777777778999999999
Q ss_pred HHHHHHHHHHHhhcccC------------------C------ccchHHHHHHH-HHHHHHHHH-hccccCChhHHHhcCC
Q 010433 183 LGILVANLINYGTEKIH------------------P------WGWRLSLGLAT-VPATLMFVG-GLFLPETPNSLVEQGK 236 (511)
Q Consensus 183 ~G~~~g~~l~~~~~~~~------------------~------~~wr~~f~~~~-~~~~~~~~~-~~~~~esp~~l~~~~~ 236 (511)
+|..+++.++....... . .+||++|+... +..++..+. ...+||.+. +++
T Consensus 164 ~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~ 239 (438)
T PRK10133 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH 239 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc
Confidence 99999998865432100 0 25777776433 333333222 333454321 000
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-H-
Q 010433 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-Q- 314 (511)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 314 (511)
.++ +..+...+.+++++++..+...+. .+...........|.+.++ +
T Consensus 240 ~~~--------------------------~~~~~~~~~~~ll~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~l~~~ 288 (438)
T PRK10133 240 SDA--------------------------KQGSFSASLSRLARIRHWRWAVLA-----QFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_pred ccc--------------------------cccchhhhHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhh
Confidence 000 000001123455566554433222 2222233343445666664 4
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010433 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 394 (511)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
.+|+++.+++.......++.++++++.+++.||+++|+.+..+..+..+.+++.... + . . ..+...
T Consensus 289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----------~-~-~-~~~~~~ 354 (438)
T PRK10133 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----------G-G-H-VGLIAL 354 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----------C-C-h-HHHHHH
Confidence 479999999999999999999999999999999999998877765554444333221 0 1 1 123344
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHH
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSA 468 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 468 (511)
.+.+++.+..++.. +....+..|+ ..+++.++.. ....++.++|++.|.+.+..+ ....+++..++.+...
T Consensus 355 ~l~glg~~~i~P~~-~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 355 TLCSAFMSIQYPTI-FSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHHHHHH-HHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 45566666555444 4444576665 4677777775 455788999999999988876 4444444444444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=260.70 Aligned_cols=370 Identities=14% Similarity=0.073 Sum_probs=251.1
Q ss_pred HhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHH
Q 010433 37 GSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI 116 (511)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l 116 (511)
++...++...++.. .|.+.+++ |++..+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 63 (379)
T TIGR00881 4 YAAYYLVRKNFALA--MPYLVEEI------------------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL 63 (379)
T ss_pred hhHHHHhHHhhhhh--hHHHHHHh------------------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh
Confidence 44555666666655 67777777 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHH-HHHhh
Q 010433 117 MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANL-INYGT 195 (511)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~-l~~~~ 195 (511)
..+.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++++ ++...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 64 PIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994 54333
Q ss_pred cccCCccchHHHHHHHHHHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCCh
Q 010433 196 EKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF 274 (511)
Q Consensus 196 ~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (511)
. ...+||+.|++.+++.++..+ ..++.||+|+....++..++.. .+.+.+.+ +++++.+..+...
T Consensus 144 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~~~~~~ 209 (379)
T TIGR00881 144 A--ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN---------EEPDGDAE---KKEEELTKKQIFL 209 (379)
T ss_pred H--hcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc---------cccccccc---cccccccchHHHH
Confidence 2 335899999988877766544 4556777664211100000000 00000000 0000000011123
Q ss_pred HHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH
Q 010433 275 RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAF 353 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 353 (511)
++.++++..+... +..+...........+.|.+++ .+|+++.+.+.......++.+++.++.+++.||..+++.
T Consensus 210 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 284 (379)
T TIGR00881 210 QYVLLNKVLWYIS-----LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR 284 (379)
T ss_pred HHHHhcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence 3444554433322 2233333344556677888875 479999999999999999999999999999998643322
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHH
Q 010433 354 FLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNN 433 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 433 (511)
..............+..... .+....+.........+... ....+....+..|..|++.|+++.|+.+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 355 (379)
T TIGR00881 285 GPLAVFFMALIIVSLLVYWL--------NPAANPLMDLICLFALGFLV-YGPQMLIGVIASELAPKKAAGTAAGFVGFFA 355 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 22221111111111111110 00111122222222222222 1222333445679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchh
Q 010433 434 LLFTALIAQAFLAALCHLKFG 454 (511)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~ 454 (511)
.+++.++|.+.|.+.++.++.
T Consensus 356 ~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 356 YLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred hhhhhhhhhhHHHHHHhhccc
Confidence 999999999999999987754
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=251.48 Aligned_cols=364 Identities=22% Similarity=0.297 Sum_probs=246.6
Q ss_pred hhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHH-----HHHHHHHHHHhhhhhhhhcch
Q 010433 38 SLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSS-----LYFAGLVSTFGASYVTRSRGR 112 (511)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-----~~l~~~i~~~~~g~l~dr~Gr 112 (511)
+.+++|...++.. .+.+.+++++ +.++++.+.+.+. ..++..+++++.|+++||+||
T Consensus 3 ~~~~~~~~~~~~~--~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~ 64 (394)
T TIGR00883 3 AVEWFDFYLYGFA--AVLVFHTFFP----------------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGR 64 (394)
T ss_pred chhHHHHHHHHHH--HHHHHHHhcC----------------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Confidence 4455666655554 3455555432 2344555554443 334445789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 113 RASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 113 r~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
|+++..+.++..++.++++++++++ .++++|+++|++.+...+....++.|++|+++|++..++...+..+|
T Consensus 65 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 144 (394)
T TIGR00883 65 KKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVG 144 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHH
Confidence 9999999999999999999998875 48889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc------cCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHH
Q 010433 185 ILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFS 258 (511)
Q Consensus 185 ~~~g~~l~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (511)
.++++.++..... ...++||+.|++.+++.++.......+||+|++..++
T Consensus 145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 200 (394)
T TIGR00883 145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ------------------------ 200 (394)
T ss_pred HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH------------------------
Confidence 9999987544321 1346899999988877766655555677766421100
Q ss_pred HHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHH
Q 010433 259 DLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIA 337 (511)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 337 (511)
+++++.+.+.++.++++..+ ..... ...+...........+.|.++ +++|.++.+.+.......+...++
T Consensus 201 ------~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 271 (394)
T TIGR00883 201 ------EKHKKKRGPIRETLTKHRKP-FLLGL--GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFIT 271 (394)
T ss_pred ------hccccccCCHHHHHHhchHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 00011123444555443311 11111 223333444556677888888 558999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccC
Q 010433 338 ALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF 417 (511)
Q Consensus 338 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (511)
.++.+++.||++||+.+.....+..+.......... .....+.......+.+.+.+.... ....+..|.+
T Consensus 272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 341 (394)
T TIGR00883 272 IPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---------DSGSFTLFFFLVLGLALIGGMYTG-PMGSFLPELF 341 (394)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---------cCCchHHHHHHHHHHHHHHHHHhh-hHHHHHHHhC
Confidence 999999999999998776544433332211111110 011223333334444444443443 3456668999
Q ss_pred CccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHH
Q 010433 418 PLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLK-FGIFLVFGGL 462 (511)
Q Consensus 418 p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 462 (511)
|++.|+++.++.+ ....++..++|.+.+.+.++.+ +........+
T Consensus 342 p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 342 PTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred CccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 9999999999854 4456788899999999999877 4444444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-30 Score=247.08 Aligned_cols=323 Identities=15% Similarity=0.136 Sum_probs=234.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|.++++.+++.+++.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ 116 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 238 (511)
+++.|+++++++++..+.......+|..++|.+++.... ..+||+.|++.++..++..+..++++|+++. + +.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 190 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN--HFGWQAIFATLFAITLLLILPTLRLKPSKKA---R-KQS 190 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHHcCCCCCc---c-ccc
Confidence 999999999999999999999999999999999665543 4589999999888877766555555554320 0 000
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCC
Q 010433 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGF 318 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (511)
+ .+.++++.++++..+...... ............+.|.++++.|+
T Consensus 191 ~------------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~ 235 (401)
T PRK11043 191 Q------------------------------DALTFKQLLKSKTYLGNVLIF-----AACSAAFFAWLTGSPFILEQMGY 235 (401)
T ss_pred h------------------------------HHHHHHHHHcChhHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHcCC
Confidence 0 011233444444433222211 11122334455678888888999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 010433 319 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFV 398 (511)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (511)
++.+.++......++.+++.++.+++.||+++|+..........++.+.+...... .....+..+....+.+
T Consensus 236 s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 307 (401)
T PRK11043 236 SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLVPLLIPFCVMA 307 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHHHHHHHHHH
Confidence 99999988888888899999999999999999887665554444443333222111 0111222233333444
Q ss_pred HHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 399 LAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
.+.+..++ .......+..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 308 ~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 308 AANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 44443333 22333345556 579999999999999999999999998877543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-30 Score=246.27 Aligned_cols=341 Identities=15% Similarity=0.142 Sum_probs=239.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM-VGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~-~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|.|..+.|++.+++.+...+.+++.|+++||+||||.++ .+..+..++.++++++++++.+++.|+++|.+.+...|..
T Consensus 29 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~ 108 (375)
T TIGR00899 29 RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQL 108 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHH
Confidence 889999999999999999999999999999999988755 4666667778888999999999999999998888888988
Q ss_pred hhHhHhcCCCCCCchh--HHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhc
Q 010433 158 PLYLSEMAPAKIRGAV--NQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQ 234 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~ 234 (511)
.+++.|+.|+++|++. .+....+.++|.+++|++++.... ..+||+.|++.++..++..+. ++++||+|++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (375)
T TIGR00899 109 FALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL--GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP-- 184 (375)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc--
Confidence 9999999887777654 578888889999999999665543 358999999998887766554 455788763210
Q ss_pred CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-
Q 010433 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF- 313 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (511)
+ ++ .+.+.++.++++..+....... ...........+.|.++
T Consensus 185 -~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 227 (375)
T TIGR00899 185 -G-AL------------------------------TRLEVRGLLASRDTRLLFVACT-----LMWGCNILYIINMPLLII 227 (375)
T ss_pred -c-cc------------------------------CcchhhhhhcCcchHHHHHHHH-----HHHHHHHHHHhhhHHHHH
Confidence 0 00 0001122333443333222111 11112233445567666
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH
Q 010433 314 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 393 (511)
Q Consensus 314 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
+++|.++.+.+..........+++.++.+++.||++||+.+..+.....+........ +..+.....
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 294 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWALLML 294 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Confidence 5589999998888877777788888999999999999998776655443333222221 112333333
Q ss_pred HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhc
Q 010433 394 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFF 473 (511)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
..+.+.+.+... +....+..|..|++ ++++.++.+...+++..++|.+.+.+.+..++...+...+++.+.+.+...+
T Consensus 295 ~~~~g~~~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 295 QLLNAIFIGILA-GIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 333344333332 33345556887754 6799999999999999999999999999888776666666666666655555
Q ss_pred cc
Q 010433 474 LP 475 (511)
Q Consensus 474 ~~ 475 (511)
++
T Consensus 373 ~~ 374 (375)
T TIGR00899 373 IK 374 (375)
T ss_pred ec
Confidence 43
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=249.78 Aligned_cols=363 Identities=16% Similarity=0.254 Sum_probs=264.0
Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhh
Q 010433 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGF 152 (511)
Q Consensus 75 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 152 (511)
+.+++++..+.+++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 456799999999999999999999999999999999999999999999999999999885 456889999999999999
Q ss_pred hhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhc-cccCChhHH
Q 010433 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPETPNSL 231 (511)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~l 231 (511)
.+|+...+.+.|.|++||++..++..++..+|.+++.++++.+-.. ..||+++|++.++.+++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-
Confidence 9999999999999999999999999999999999999987666654 36999999999999999877754 45777742
Q ss_pred HhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH---hccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhc
Q 010433 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAAR---AIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (511)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
++...+. |.+.+.+.+.+++ ..+.|++++++++..|..+ +..+....+.+.+..|
T Consensus 223 --h~~is~~---------------El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~-----~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 223 --HPNISEK---------------ELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIW-----ISAFGGNWGFYLLLTY 280 (466)
T ss_pred --CCCCCHH---------------HHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 2222111 1111111111111 1367899999887755544 5677778888899999
Q ss_pred HHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---------hHHHhhhHHHHHHHHHHHHHHHhhcCC
Q 010433 309 APVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR---------AFFLEAGTEMIIYMVIVAITLALEFGE 378 (511)
Q Consensus 309 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
.|.|+++ +|++..+.|+..+++.+...+..+++|.++||..+| ..-.++....++.++.+.+.
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~------- 353 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT------- 353 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-------
Confidence 9999977 899999999999999999999999999999998662 11122222222222222222
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---chhh
Q 010433 379 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL---KFGI 455 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 455 (511)
+....+..++++.+.....+... ...........+++.+..+|+.+....+.++++|.+.+.+.... .|..
T Consensus 354 ----~~~~~~~a~~~l~~~~~~~g~~~--~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 354 ----SDEHRLLAVILLTIAIGLSGFNI--SGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred ----CCCcchHHHHHHHHHHHHcccch--hhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 11122223333222222222222 21222112214578999999999999999999999999988422 3555
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 010433 456 FLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (511)
.+.+.++..+++.+.+.+.
T Consensus 428 VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHhchheeEe
Confidence 5554444444444444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=243.89 Aligned_cols=339 Identities=15% Similarity=0.105 Sum_probs=234.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+.+..+.+++.+.+.+++.++++++|+++||+|||++++.+.++.+++++++.++.+. ++.|+++|++.+...|...
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999888887764 7889999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 238 (511)
+++.|++|+++|++++++.+....+|.++||.+++.+... .|+..+.+.+...++..+..+.+||+|+.. +++.+
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 185 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP---HAEAALAVCALIYLLAALFNLFIPRLGARR--PGQSW 185 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccCC
Confidence 9999999999999999999999999999999998776653 377777776665555555556778865321 00000
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cC
Q 010433 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LG 317 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 317 (511)
+..+ ...+. +...+.+++++..+....... + .........+..|.++++ +|
T Consensus 186 ~~~~-------------~~~~~----------~~~~~~l~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 186 NPIA-------------LLRDF----------FHACRVLWRDKLGRFSLAGTT-L----FWGAGATLRFLVLAWAPVALG 237 (393)
T ss_pred CHHH-------------HHHHH----------HHHHHHHHhCchhHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHcC
Confidence 0000 00000 011234555555443332221 1 111223334445555544 79
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHH
Q 010433 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLF 397 (511)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (511)
.++.+.+......+++.+++.+..+++.||.++++....+. ...+....+... +..+.......+.
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 303 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLLPAYPLLILI 303 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887666553 222222222111 1123333334444
Q ss_pred HHHHhcccccccceeecccCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 010433 398 VLAYGRSWGPLGWLVPSELFPLEM-RSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 469 (511)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (511)
+.+.+....+.. ....+..|++. +|++.++.+...+++..++..+.+.+ +..+-.....+.+++.+....
T Consensus 304 G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 304 GALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 555444444443 34456655554 79999999999999999999998855 566655555555444444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-31 Score=249.76 Aligned_cols=345 Identities=23% Similarity=0.328 Sum_probs=247.5
Q ss_pred HHHhhhhhccccccccccch-hhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 010433 35 MGGSLFGYDLGVSGGVTSMD-DFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR 113 (511)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 113 (511)
++.++..++...+.+. +| .+.+++ |.+..+.+++.+++.++..+++++.|+++||+|||
T Consensus 3 l~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 62 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPA--LPLYLAEEL------------------GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR 62 (352)
T ss_dssp HHHHHHHHHHHHHHHH--HH-HHHCCS------------------TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHcc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 3445555555555444 45 455555 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010433 114 ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (511)
Q Consensus 114 ~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~ 193 (511)
+++..+.++.+++.++..++++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+.++|.+++|.+++
T Consensus 63 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 142 (352)
T PF07690_consen 63 RVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGG 142 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhh
Confidence 99999999999997777777888899999999999999999999999999999999999999999999999999999966
Q ss_pred hhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccC
Q 010433 194 GTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKN 272 (511)
Q Consensus 194 ~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (511)
.+. +..+||+.|++.+++.++..++ ..+++++|+....+++.++ + ++.++...
T Consensus 143 ~l~--~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~----------------~--------~~~~~~~~ 196 (352)
T PF07690_consen 143 FLI--SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES----------------E--------SKKPKPLK 196 (352)
T ss_dssp HCC--CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT----------------T----------HHHCCC
T ss_pred hhh--hccccccccccccchhhhhhhhHhhhhhhccccccccccccc----------------c--------cccccccc
Confidence 555 4458999999999998887664 3445544321111100000 0 00111111
Q ss_pred -ChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHH-HHHcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010433 273 -PFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI-FQSLGFG-SGAALYSSVITGIALCIAALISMAFVDKFG 349 (511)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 349 (511)
.++.+++++..+... ...+...........+.|.+ .+.+|++ ..+.+.......+..+++.++.+++.||++
T Consensus 197 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (352)
T PF07690_consen 197 PGFKSLFKNPVLWILL-----IAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFG 271 (352)
T ss_dssp H-CTHHHHHHCCHHHH-----HHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhhhh-----hhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 245555555554222 22222333445577888887 4668888 788899999999999999999999999999
Q ss_pred ChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHH
Q 010433 350 RRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV 429 (511)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 429 (511)
+|+..........+..+.+...... ...........+.+.+.+.. .+....+..|..|++.++++.|+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~ 340 (352)
T PF07690_consen 272 RRRRLLIAILLLILGALGLLLLPFS----------SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLF 340 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSHHH----------CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8877766655555444444332211 11233333444455554434 344466668999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010433 430 VCNNLLFTALIA 441 (511)
Q Consensus 430 ~~~~~~~~~~~~ 441 (511)
+...++++.++|
T Consensus 341 ~~~~~~~~~igP 352 (352)
T PF07690_consen 341 NSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 999999998886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=245.90 Aligned_cols=364 Identities=14% Similarity=0.068 Sum_probs=245.7
Q ss_pred HHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCch-----HHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 010433 36 GGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQ-----VLTLFTSSLYFAGLVSTFGASYVTRSR 110 (511)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~-----~~g~~~s~~~l~~~i~~~~~g~l~dr~ 110 (511)
+.++.++......+. +|.+.+++ |++.. +.|++.+++.++..++++++|+++||+
T Consensus 22 ~~~~~~~~~~~~~~~--l~~~~~~~------------------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 81 (408)
T PRK09874 22 GCFLTGAAFSLVMPF--LPLYVEQL------------------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK 81 (408)
T ss_pred HHHHHHHHHHHhhhh--HHHHHHHh------------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445555554444 67777776 55544 358999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 010433 111 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANL 190 (511)
Q Consensus 111 Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 190 (511)
|||+.+..+.++.+++.+++.++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|.+++|.
T Consensus 82 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (408)
T PRK09874 82 GRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPL 160 (408)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865 56778888999999999999999999999999999999
Q ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHh
Q 010433 191 INYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARA 269 (511)
Q Consensus 191 l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (511)
+++.+.. ..+||+.|++.++..++..+. .+++||+++.. ++.++ .+ . +
T Consensus 161 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~~---~----~- 209 (408)
T PRK09874 161 AGGLLAD--SYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEM------------------LH---M----R- 209 (408)
T ss_pred HHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhh------------------hH---H----H-
Confidence 9665543 358999999988877766544 44566643210 00000 00 0 0
Q ss_pred ccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCCh----hHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 270 IKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSG----AALYSSVITGIALCIAALISMAFV 345 (511)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~ 345 (511)
...+.++++......... .+...........+.+.+..+.+.+.. ..+......+++.+++.+..+++.
T Consensus 210 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~ 282 (408)
T PRK09874 210 ---EVVTSLKNPKLVLSLFVT----TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLG 282 (408)
T ss_pred ---HHHHhCcCCchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011223333322211111 111111222334455666655332222 234555666788888899999999
Q ss_pred hhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhH
Q 010433 346 DKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAG 425 (511)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 425 (511)
||++||+.+..+.....+..+..... ...+...+...+.+.+.+... +.......+..|++.+++.
T Consensus 283 dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~ 348 (408)
T PRK09874 283 DRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQLGILRFLLGAADGALL-PAVQTLLVYNSSNQIAGRI 348 (408)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHhhhHhhH-HHHHHHHHHhCCcccceee
Confidence 99999998887766555444433222 112333333444444444333 3233344577788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHh
Q 010433 426 QSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 472 (511)
Q Consensus 426 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
+++.+....++..++|.+.|.+.+..++...+...+++.+.+.+..+
T Consensus 349 ~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 349 FSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred ehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888876666655555555444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=238.12 Aligned_cols=343 Identities=23% Similarity=0.297 Sum_probs=273.5
Q ss_pred HHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 010433 34 AMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR 113 (511)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 113 (511)
.++.+...++....++. .|.+.+++ |.+..+.+++.+.+.++..+++++.|+++||+|||
T Consensus 5 ~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r 64 (352)
T cd06174 5 FLGFFLSGLDRGLLSPA--LPLLAEDL------------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR 64 (352)
T ss_pred HHHHHHHHHhhhhhHhh--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc
Confidence 34455666666666555 56666665 77999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010433 114 ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (511)
Q Consensus 114 ~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~ 193 (511)
+.+..+.++..++.++..+.++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (352)
T cd06174 65 RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCC
Q 010433 194 GTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNP 273 (511)
Q Consensus 194 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (511)
..... .+||+.+++.++..++..+...+++
T Consensus 145 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 174 (352)
T cd06174 145 LLAES--LGWRWLFLILAILGLLLALLLLFLL------------------------------------------------ 174 (352)
T ss_pred HHHHH--hhHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 65543 4699999998888777655544332
Q ss_pred hHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 010433 274 FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL-GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 352 (511)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 352 (511)
+. ..... +..+...........+.|.+.++. |.+..+.+.......++..++.++.+++.||++||+
T Consensus 175 ----------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 175 ----------RL-LLLLA-LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred ----------HH-HHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 11111 334455556677778888888774 999999999999999999999999999999999998
Q ss_pred -HHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHH
Q 010433 353 -FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVC 431 (511)
Q Consensus 353 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 431 (511)
.+..+..+..++.+...... ..+.......+.+.+.+.. .+....+..|..|+++|++.+|+.+.
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T cd06174 243 LLLLIGLLLAALGLLLLALAP-------------SLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNT 308 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHH
Confidence 88777777776666555431 1334444555555555544 35556677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHh
Q 010433 432 NNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 472 (511)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
...++..+++.+.+.+.+..++...+...++..+++.+...
T Consensus 309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999887776666665555555544443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=230.33 Aligned_cols=344 Identities=17% Similarity=0.194 Sum_probs=258.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI---SMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~---~~l~~~r~l~G~~~~~~~~ 155 (511)
++|+.|.+++.++..+...+..++.|.+.||+|.|++...+.++..+..+..+++.++ +++++++++.|++ |....
T Consensus 45 ~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFa 123 (417)
T COG2223 45 GLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFA 123 (417)
T ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceeh
Confidence 9999999999999999999999999999999999999999999999999999998554 5999999999997 55788
Q ss_pred hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCcc---chHHHHHHHHHHHHHHHH-hccccCChhHH
Q 010433 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG---WRLSLGLATVPATLMFVG-GLFLPETPNSL 231 (511)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~---wr~~f~~~~~~~~~~~~~-~~~~~esp~~l 231 (511)
+....+++|+||+++|.++|+.. ..++|..+..+++...... .+ ||....+..+..++..++ ++.+.|.|..
T Consensus 124 v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~--~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~- 199 (417)
T COG2223 124 VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA--FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH- 199 (417)
T ss_pred cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-
Confidence 99999999999999999999999 7788877776664333322 35 999998888888876555 5556776631
Q ss_pred HhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcc-CChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHH
Q 010433 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIK-NPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (511)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
+.+ .++.. .+++.+++++..|..- +.++..+.++..+..++|
T Consensus 200 --r~~------------------------------~~~~~~~~~~~v~~~~~~W~ls-----llY~~tFG~Fvgfs~~l~ 242 (417)
T COG2223 200 --RAS------------------------------VKPQLPAQLKAVFSNKDTWLLS-----LLYFATFGGFVGFSAYLP 242 (417)
T ss_pred --hcc------------------------------ccccchhHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 000 00001 2344555566555433 456667777888999999
Q ss_pred HHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHH
Q 010433 311 VIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 389 (511)
Q Consensus 311 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.+++ ++|.++.+++.......+.+.+.+.++|+++||+|.+|.....+..++++........... ......+.
T Consensus 243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~------~~~~~~~~ 316 (417)
T COG2223 243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF------GHGGSFVV 316 (417)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc------ccCcchHH
Confidence 9985 4999999999999999999999999999999999999998888887777776666542110 00122333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhh-HHHHHHHHHHHH
Q 010433 390 LVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGI-FLVFGGLVVIMS 467 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 467 (511)
.+..........+.+.... +.++..++|+ +.|.+.|++..++.+|++..|..++...+..+ +.. ++++..+.+++.
T Consensus 317 ~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~ 394 (417)
T COG2223 317 FVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVAL 394 (417)
T ss_pred HHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3444444455555555444 5555677775 57889999999999999999999999999888 333 444444444444
Q ss_pred HHHHh
Q 010433 468 AFIYF 472 (511)
Q Consensus 468 ~~~~~ 472 (511)
+..+.
T Consensus 395 v~~~~ 399 (417)
T COG2223 395 VLTWA 399 (417)
T ss_pred HHHHH
Confidence 43433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=243.53 Aligned_cols=311 Identities=17% Similarity=0.185 Sum_probs=219.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...
T Consensus 22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 101 (377)
T PRK11102 22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVIN 101 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKL 237 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~ 237 (511)
+++.|++|+++|++++++.+.+..+|..++|.++..... ..+||+.|++.+++.++..+. .+++||+++. +++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 175 (377)
T PRK11102 102 ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV--WFSWHAIFWVLALAAILAAALVFFFIPETLPK---ERR- 175 (377)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-
Confidence 999999999999999999999999999999999655543 358999999888877766444 4567775421 000
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-HHc
Q 010433 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QSL 316 (511)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (511)
++ . +.+ + ...+.++.++++..+... +..+...........+.|.++ +.+
T Consensus 176 ~~-------------~--~~~---~-------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (377)
T PRK11102 176 QP-------------F--HLR---T-------TIRNFASLFRHKRVLGYM-----LASGFSFAGMFSFLTAGPFVYIELN 225 (377)
T ss_pred CC-------------C--ChH---H-------HHHHHHHHHcChHHHHHH-----HHHHHHHHHHHHHHHcCHHHHHHHh
Confidence 00 0 000 0 011223444444322221 122222333444555666655 458
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010433 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICL 396 (511)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....+..+.+...... ....+........
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 296 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---------DLGFWALVVGVAA 296 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887766544333322222110 0111222222222
Q ss_pred HHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHH
Q 010433 397 FVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLF 436 (511)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 436 (511)
...+.+... +.......|..| +.++++.++.+......
T Consensus 297 ~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 334 (377)
T PRK11102 297 FVGCVSMIS-SNAMAVILDEFP-HMAGTASSLAGTLRFGI 334 (377)
T ss_pred HHHHHHHhh-HHHHHHHhcccc-ccchHHHHHHHHHHHHH
Confidence 322222222 222334456666 77899999887765533
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=244.08 Aligned_cols=327 Identities=15% Similarity=0.181 Sum_probs=227.9
Q ss_pred chhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010433 53 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 132 (511)
Q Consensus 53 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 132 (511)
+|.+.+++ |.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++.+
T Consensus 26 lp~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~ 87 (392)
T PRK10473 26 LPRIAADL------------------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 68888887 889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Q 010433 133 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 212 (511)
Q Consensus 133 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~ 212 (511)
+++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|.+++|.++.... +..+||+.|++.++
T Consensus 88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~--~~~g~~~~~~~~~~ 165 (392)
T PRK10473 88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM--LKFPWQSLFYTMAA 165 (392)
T ss_pred hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999965543 34589999999888
Q ss_pred HHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHH
Q 010433 213 PATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 291 (511)
Q Consensus 213 ~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (511)
..++..+. .+++||+++. +++.+. .. .+..++.++++..+.......
T Consensus 166 ~~~i~~~~~~~~~~~~~~~---~~~~~~------------------~~-----------~~~~~~~~~~~~~~~~~~~~~ 213 (392)
T PRK10473 166 MGILVLLLSLFILKETRPA---RAPAAS------------------SK-----------PRENSESLLNRFFLSRLVITT 213 (392)
T ss_pred HHHHHHHHHHHHcCCCCCc---ccCCcc------------------ch-----------HHHHHHHHhCHHHHHHHHHHH
Confidence 77766544 4556776421 000000 00 000112233333222221111
Q ss_pred HHHHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHH
Q 010433 292 GIPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAI 370 (511)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 370 (511)
........+..+.|.++ +++|+++.+.+......+++.+++.++.+++.||+++|+....+..+..++.+.+..
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 214 -----LSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred -----HHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 11111223344556665 458999989999999999999999999999999999999888777766666555544
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 371 TLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
... .+.......+...+.+..+... ...+..|.+.|+ |.......++..+++.+.+.+.+.
T Consensus 289 ~~~-------------~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~ 349 (392)
T PRK10473 289 SPS-------------HAVSLFGITLICAGFSVGFGVA---MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAV 349 (392)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHhHHH---HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1122222223233333232221 223444544443 333344456666777777777766
Q ss_pred cchhh
Q 010433 451 LKFGI 455 (511)
Q Consensus 451 ~~~~~ 455 (511)
.++..
T Consensus 350 ~g~~~ 354 (392)
T PRK10473 350 LGISA 354 (392)
T ss_pred hccch
Confidence 66443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=240.62 Aligned_cols=317 Identities=13% Similarity=0.069 Sum_probs=229.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|+|..+.|++.+.+.+...+.++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 121 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT 121 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKL 237 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~ 237 (511)
+++.|++|+++|++++++.....++|..+||++++.+. .++||+.|++.++..++..+. .+++||.+. ++..
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~---~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~~~ 194 (400)
T PRK11646 122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL---QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL----STVR 194 (400)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc----cccc
Confidence 99999999999999999999999999999999977665 248999999988777665443 344554210 0000
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcC
Q 010433 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (511)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (511)
+ +.+.++++.++++......... +...........+.|.++++.+
T Consensus 195 ~------------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 195 T------------------------------PVREGMTRVLRDKRFVTYVLTL-----TGYYMLAVQVMLMLPIMVNDIA 239 (400)
T ss_pred h------------------------------hhHHHHHHHHcCchHHHHHHHH-----HHHHHHHHHHHHhhhhhHHhhc
Confidence 0 0011234455554433222111 1111112223457788887766
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHh-hcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010433 318 FGSGAALYSSVITGIALCIAALISMAFVD-KFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICL 396 (511)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
.++.+.+......++....+....+++.| |++.++.+..+..+..++..++.... + .+.......+
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~------------~-~~~~~~~~~l 306 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS------------N-LQQLFTLICL 306 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh------------h-HHHHHHHHHH
Confidence 67788888887777766666655566665 45655555555555555544443321 1 1222333333
Q ss_pred HHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 397 FVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
++.+..... |....+..+..|++.|++++|+.+....++..++|.+.|.+.++.
T Consensus 307 ~~~g~~~~~-p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 307 FYIGSIIAE-PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHH-ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 444443333 333556678999999999999999999999999999999998875
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=244.47 Aligned_cols=373 Identities=13% Similarity=0.115 Sum_probs=252.2
Q ss_pred hhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-----ch
Q 010433 38 SLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GR 112 (511)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Gr 112 (511)
+..|.+....+.. +|.+.++. |.+.++++.+ +.....+ ++.+++|+++||+ ||
T Consensus 22 ~~~gl~~~~~~~~--l~~~l~~~------------------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 22 FASGLPLALTSGT--LQAWMTVE------------------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred HHHHHHHHHHHHH--HHHHHHhC------------------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCC
Confidence 4455555555444 56666655 7888899987 3444444 6899999999999 99
Q ss_pred hHH-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 010433 113 RAS-IMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVA 188 (511)
Q Consensus 113 r~~-l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 188 (511)
|+. +..+.++.+++..+.++. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.+++
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 885 667888787887777775 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Q 010433 189 NLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAAR 268 (511)
Q Consensus 189 ~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (511)
+.++...... ..|||..|++.++..++..+..+++||+++.. ++ ++. . . +
T Consensus 160 ~~l~~~l~~~-~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~~---------------~----~------~ 209 (491)
T PRK11010 160 GGLALWLADR-YLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PKT---------------L----E------Q 209 (491)
T ss_pred HHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-ccc---------------h----h------h
Confidence 9886554431 35899999999888777666555678865310 00 000 0 0 0
Q ss_pred hccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHh
Q 010433 269 AIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSV-ITGIALCIAALISMAFVD 346 (511)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d 346 (511)
....++++.++++..+......+ ...........+.+.++ ++.|++..+.+.... ...++.+++.++.|++.|
T Consensus 210 ~~~~~l~~~~~~~~~~~~ll~~~-----l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~d 284 (491)
T PRK11010 210 AVVAPLRDFFGRNNAWLILLLIV-----LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQ 284 (491)
T ss_pred hHHHHHHHHHcCcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00123445555544333322211 11122223334455554 568999999999874 556799999999999999
Q ss_pred hcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHH
Q 010433 347 KFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQ 426 (511)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 426 (511)
|+++|+.+..+..+..+..+.+...... . ...+.......+.....+...... +.+..+..+++.+++..
T Consensus 285 r~g~~~~l~i~~~l~~l~~l~~~~l~~~--------~-~~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~ 354 (491)
T PRK11010 285 RLSLFRALMIFGILQGVSNAGYWLLSIT--------D-KNLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQF 354 (491)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhc--------c-ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHH
Confidence 9999887765555444433332221100 0 111222222222222222222222 44456788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccC
Q 010433 427 SVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 427 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
|+.+....++..+++++.|.+.+..|+...+.+..++.+.+++.....+++
T Consensus 355 gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 355 ALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998888877777777777766666665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=235.34 Aligned_cols=346 Identities=12% Similarity=0.127 Sum_probs=245.0
Q ss_pred HHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 010433 31 MVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR 110 (511)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~ 110 (511)
.+++...+..|++.+..++. +|.++++| |++..+.|++.+.+.+++.+++++.|++.||+
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l--~~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~ 65 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPM--VPQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677888888887776 68888887 89999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHH
Q 010433 111 GRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILV 187 (511)
Q Consensus 111 Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 187 (511)
|||+++..+.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+
T Consensus 66 G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII 145 (410)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 3589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccC------------------------CccchHHHHHHHHHHHHHHHHhcc--ccCChhHHHhcCCHHHHH
Q 010433 188 ANLINYGTEKIH------------------------PWGWRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGKLDEAR 241 (511)
Q Consensus 188 g~~l~~~~~~~~------------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~~~ 241 (511)
+|.++....... ..+||++|++.+++.++..+...+ .||.++ ++ ++
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~-- 217 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK-- 217 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc--
Confidence 999876553211 136999999888877765444322 343211 00 00
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHc--CCC
Q 010433 242 KVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL--GFG 319 (511)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~ 319 (511)
+...+.+.++.+|++..+... +..+...........+++.+.++. +.+
T Consensus 218 -------------------------~~~~~~~~~~~~~~~~~~~~~-----l~~f~yvg~e~~~~s~l~~y~~~~~~~~~ 267 (410)
T TIGR00885 218 -------------------------QISFSASLSRLARIRHYREGV-----IAQFFYVGVQIMCWTFIIQYAVRLIPGMT 267 (410)
T ss_pred -------------------------cccchhhHHHHHhChhHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 000011223444544433322 223333333444556777777664 333
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHH
Q 010433 320 SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVL 399 (511)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (511)
...+............+++++++++.||+++|+.+.....+..+..++..... + ........+.++
T Consensus 268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~------------~--~~~~~~l~~~gl 333 (410)
T TIGR00885 268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG------------G--HVGLYCLTLCSA 333 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC------------C--hHHHHHHHHHHH
Confidence 34445455566677889999999999999999987776666555544444321 1 112334444455
Q ss_pred HHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 400 AYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
+.+..+ |..+....+..+++.+..+.++... .+|+.+.|++.|.+.|..
T Consensus 334 f~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 334 FMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHh
Confidence 555566 4445666677777665445454443 399999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=234.61 Aligned_cols=329 Identities=16% Similarity=0.182 Sum_probs=232.7
Q ss_pred chhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010433 53 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 132 (511)
Q Consensus 53 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 132 (511)
+|.+.+++ |+|+.+.+++.+++.+++.++++++|+++||+|||+++..+.++..++.+++.+
T Consensus 31 ~~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 92 (394)
T PRK11652 31 IADMARDL------------------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF 92 (394)
T ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 67777777 889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Q 010433 133 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 212 (511)
Q Consensus 133 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~ 212 (511)
+++++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.+++.... ..+||+.|++.++
T Consensus 93 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--~~g~~~~f~~~~~ 170 (394)
T PRK11652 93 AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--LFGWRACYLFLLL 170 (394)
T ss_pred HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999665543 4589999999887
Q ss_pred HHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHH
Q 010433 213 PATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 291 (511)
Q Consensus 213 ~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (511)
..++..+ ..+++||+++. ++++++ .+..+++.++++..+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~---~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~- 216 (394)
T PRK11652 171 LGAGVTFSMARWMPETRPA---DARRTR------------------------------VLASYRTLLSNRRFNCYLLML- 216 (394)
T ss_pred HHHHHHHHHHHhCCccCcc---ccchhH------------------------------HHHHHHHHHcChHHHHHHHHH-
Confidence 7665544 34567776521 000000 011233444444433322221
Q ss_pred HHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHH
Q 010433 292 GIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAI 370 (511)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 370 (511)
+........+..+.+.++++ +|+++.+.++......++.+++.++.+++.||.+++.. .....+.++.+....
T Consensus 217 ----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~ 290 (394)
T PRK11652 217 ----IGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWI 290 (394)
T ss_pred ----HHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 11122233344455666665 89999999988888888888899999999998873322 222222222222211
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 371 TLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
.... .....+.......+.+.+.+... +....+..|..| +.++++.++.+....+++.+++.+.+.+...
T Consensus 291 ~~~~--------~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 291 PGWF--------GVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHh--------ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1100 00122333444455555555434 333444457776 5789999999999999999999988877554
Q ss_pred c
Q 010433 451 L 451 (511)
Q Consensus 451 ~ 451 (511)
.
T Consensus 361 ~ 361 (394)
T PRK11652 361 G 361 (394)
T ss_pred c
Confidence 3
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=234.46 Aligned_cols=331 Identities=10% Similarity=0.062 Sum_probs=236.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|++..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++++++.++++|++.|.+.+...+...
T Consensus 39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999988888888899
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKL 237 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~ 237 (511)
++..|.+|+++|++++++.....++|.+++|++++.... .+||..|++.++..++..+. .+++||+++ +++.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~~ 191 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---QSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIAT 191 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHHHHhcccc----cccc
Confidence 999999999999999999999999999999999776653 48999999888777765443 344555431 0000
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH---H
Q 010433 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF---Q 314 (511)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 314 (511)
++ ++ ..+.++.++++..+....... +..+. ......+.+.+. +
T Consensus 192 ~~-------------------------~~----~~~~~~~~~~~~~~~~~~~~~-l~~~~----~~~~~~~~~~~~~~~~ 237 (395)
T PRK10054 192 ET-------------------------GS----VWSPSVLLQDKALLWFTCSGF-LASFV----SGAFASCISQYVMVVA 237 (395)
T ss_pred ch-------------------------hh----hhhhhhhccCceehHHHHHHH-HHHHH----HHHhhhhHHHHHHHhc
Confidence 00 00 001134555555544432222 11111 222223444444 3
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010433 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 394 (511)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+.+.+....+.......+.....+...+++.||.++|+.+..+..+..++...+.... +..+...+..
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 305 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG------------NSLLLWGMSA 305 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc------------hHHHHHHHHH
Confidence 3455666677777777777777788889999999999888777666666555443321 1123333344
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
.+++.+.. ...|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.++...+.....+.
T Consensus 306 ~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~ 373 (395)
T PRK10054 306 AVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAI 373 (395)
T ss_pred HHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence 44444443 223444556678889999999988654 677899999999999999998765555443333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=230.18 Aligned_cols=340 Identities=14% Similarity=0.108 Sum_probs=223.4
Q ss_pred cCCchHHHHHHHHHHH-HHHHHHHhhhhhhhhcchhHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASI-MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l-~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
|++.+++|++.+...+ ++.++.+++++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...|.
T Consensus 47 ~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 125 (393)
T PRK15011 47 HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQ 125 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 8899999999877655 55666665666 9999999875 5566666778888889999998877766655555677888
Q ss_pred hhhHhHhcCCCCCCc--hhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHh
Q 010433 157 VPLYLSEMAPAKIRG--AVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 233 (511)
Q Consensus 157 ~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~ 233 (511)
...++.|+.++++|. ...++.+.+.++|.+++|++++.+.. ..|||..|++.++..++..+. .+++||.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (393)
T PRK15011 126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM--GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE--- 200 (393)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---
Confidence 889899988766553 44578889999999999999766543 358999999998877766554 4557876520
Q ss_pred cCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH
Q 010433 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 313 (511)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (511)
+++ ++ .+.+...++++. ..... ............+..+.|.++
T Consensus 201 ~~~-~~--------------------------------~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~p~~l 243 (393)
T PRK15011 201 LPL-AT--------------------------------GTLEAPRRNRRD--TLLLF--VICTLMWGTNSLYIINMPLFI 243 (393)
T ss_pred Ccc-cc--------------------------------cccccccccccc--HHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 000000011111 11111 111222223344556788777
Q ss_pred H-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHH
Q 010433 314 Q-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 392 (511)
Q Consensus 314 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
+ ++|+++.+.+.......+..+++.++.|+++||++||+.+..+.....+........ +..+..+.
T Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~ 310 (393)
T PRK15011 244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------------HSPAILLG 310 (393)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHH
Confidence 5 589998888888887778888899999999999999987765544433332221111 11222222
Q ss_pred HHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHh
Q 010433 393 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 472 (511)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
...+.....+.... ....+..|..|+ .+++++++.+...+++..+++.+.|.+.+..++...+....++.+.+.+.++
T Consensus 311 ~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 311 LQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 22222222222211 123344688885 5999999999999999999999999999988877666666666666666666
Q ss_pred cccc
Q 010433 473 FLPE 476 (511)
Q Consensus 473 ~~~~ 476 (511)
+.||
T Consensus 389 ~~~~ 392 (393)
T PRK15011 389 RIKD 392 (393)
T ss_pred hhcC
Confidence 6553
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=231.38 Aligned_cols=326 Identities=15% Similarity=0.130 Sum_probs=233.2
Q ss_pred chhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010433 53 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 132 (511)
Q Consensus 53 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 132 (511)
+|.+.+++ |++.++.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+.+ .
T Consensus 23 lp~l~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~ 83 (355)
T TIGR00896 23 LPQIRSAL------------------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S 83 (355)
T ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H
Confidence 78888887 9999999999999999999999999999999999999999999988888877 7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Q 010433 133 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 212 (511)
Q Consensus 133 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~ 212 (511)
+++++.+++.|++.|++.+...+....++.|+++ ++|++++++.+.+..+|..+++.++.........+||+.|.+.++
T Consensus 84 ~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~ 162 (355)
T TIGR00896 84 APGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWAL 162 (355)
T ss_pred hccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8899999999999999999988888889999986 689999999999999999999988655543322349999887766
Q ss_pred HHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHH
Q 010433 213 PATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 292 (511)
Q Consensus 213 ~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (511)
..++... .++|+.++ +++. +++..+...++.+|++..+...
T Consensus 163 ~~~~~~~--~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~----- 203 (355)
T TIGR00896 163 PALLALL--AWIPQVRR----RVAA----------------------------NQTTTRLTPVRIWRSPLAWQVT----- 203 (355)
T ss_pred HHHHHHH--HHhhhhcc----ccCC----------------------------CCCCCCCCCchhhcCHhHHHHH-----
Confidence 5443322 22343321 0000 0000011233444544333222
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHhhhHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFG-RRAFFLEAGTEMIIYMVIVAIT 371 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 371 (511)
+..+.....++....+.|.++++.|++..+.+...+...++.++++++.+++.||++ ||+....+..+..++.+.+...
T Consensus 204 ~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (355)
T TIGR00896 204 VFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA 283 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Confidence 222333344556677889999889999999999999999999999999999999994 5555555555555554444332
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeec-ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 372 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPS-ELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
. .. .... ...+++.+.+..++ ....... +..+++.++...++.+..+.++..++|.+.|.+.|+
T Consensus 284 ~-----------~~--~~~~-~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 284 P-----------MH--GLWA-WALVLGLGQGGAFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred h-----------hh--HHHH-HHHHHHHhhhhHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01 1111 23334444433332 2222223 334456778899999999999999999999999987
Q ss_pred cc
Q 010433 451 LK 452 (511)
Q Consensus 451 ~~ 452 (511)
.+
T Consensus 349 ~g 350 (355)
T TIGR00896 349 SG 350 (355)
T ss_pred hc
Confidence 76
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=233.96 Aligned_cols=321 Identities=15% Similarity=0.117 Sum_probs=215.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|+|..+.+++.+++.+++.++++++|+++||+|||+.+..+.++.+++.+++++++ +++.+++.|+++|++.+. .+..
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~ 111 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASC 111 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhH
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999998664 5667
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccc--------CCccchHHH-HHHHHHHHHH-HHHhccccCC
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI--------HPWGWRLSL-GLATVPATLM-FVGGLFLPET 227 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~--------~~~~wr~~f-~~~~~~~~~~-~~~~~~~~es 227 (511)
..++.|++|+++|++++++.....++|..+++.++..+... ...+||+.| +..++...+. .+...+.+|+
T Consensus 112 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 112 MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 89999999999999999999977777777776665433221 134799999 4445444443 3334556666
Q ss_pred hhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHh
Q 010433 228 PNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307 (511)
Q Consensus 228 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
|+. +++++ +.. ..+..... .+ +......+.++++..+...+ ..+...........
T Consensus 192 ~~~----~~~~~-~~~-----~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 246 (366)
T TIGR00886 192 PPG----KPATG-KLS-----FKGARWSV----GT------GALGDQLKVFRDRHTWILAL-----LYSVTFGSFLGVSS 246 (366)
T ss_pred Ccc----cccch-hcc-----cccccccc----cc------hhHHHHHHHHhccchhhHHH-----HHHHHHHHHHHHHH
Confidence 531 11000 000 00000000 00 00012334455544333222 22233334455667
Q ss_pred cHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 010433 308 YAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 386 (511)
Q Consensus 308 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+.|.++++ +|+++.+++.......+..++++++.+++.||+++|+....+......+..++.... .+...
T Consensus 247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 317 (366)
T TIGR00886 247 IFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL---------VSPLS 317 (366)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC---------CCcch
Confidence 78888854 799999999888889999999999999999999998877666555444444433321 00002
Q ss_pred hHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHH
Q 010433 387 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLF 436 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 436 (511)
.+.......+.....+..... .+....+..| +++|+++|+.+..+++|
T Consensus 318 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 318 LAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhccCC
Confidence 222233333333344433333 3555567777 68999999988877654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-28 Score=230.58 Aligned_cols=354 Identities=12% Similarity=0.059 Sum_probs=251.0
Q ss_pred HHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhH
Q 010433 35 MGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRA 114 (511)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~ 114 (511)
++++...+..++..+. +|.+.+++ |+|..++|++.+++.+...++++++|+++||+|||+
T Consensus 11 ~~~~~~~~~~~~~~p~--l~~~l~~~------------------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~ 70 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPF--FPAWLKGI------------------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHII 70 (382)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 3344444444555444 67777776 889999999999999999999999999999999854
Q ss_pred HH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 010433 115 SI----MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANL 190 (511)
Q Consensus 115 ~l----~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 190 (511)
.. ..+..+..+ ..+..+++++.+++.|.++|.+.+...|...++..++ +++|+++++....+.++|.+++|+
T Consensus 71 ~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~ 146 (382)
T TIGR00902 71 IALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSA 146 (382)
T ss_pred HHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHH
Confidence 33 222222222 2445678999999999999999998899988887765 478899999999999999999999
Q ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhc
Q 010433 191 INYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAI 270 (511)
Q Consensus 191 l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (511)
+++.+.. .+|||..|++.++..++..+.. .++|+++ ++++.++ ++.+.
T Consensus 147 l~g~l~~--~~g~~~~f~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~--------------------------~~~~~ 194 (382)
T TIGR00902 147 LFGGLIG--MFDEQNILAILTAGLAFMLIGF-LIKPTIP---PKDAIPE--------------------------DESQG 194 (382)
T ss_pred HHHHHHH--HcChhHHHHHHHHHHHHHHHHH-HcCCCCC---CCccccc--------------------------ccccc
Confidence 9665543 4589999988765533333323 3333321 0000000 00001
Q ss_pred cCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010433 271 KNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 350 (511)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 350 (511)
..+.++++|++..+.... ..+...........+.|.++++.|.++.+.+.......+..+++.+..+++.||+++
T Consensus 195 ~~~~~~~l~~~~~~~~l~-----~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~ 269 (382)
T TIGR00902 195 DSAFIALLKNPMNLRFLA-----AVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSA 269 (382)
T ss_pred chhHHHHHcChHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCH
Confidence 123456666655444332 223333445566678888888899999999999999999999999999999999999
Q ss_pred hhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHH
Q 010433 351 RAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV 430 (511)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 430 (511)
|+.+..+.....+........ +..+..+....+.+..++...... ..++++. |++.++++.++.+
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~ 334 (382)
T TIGR00902 270 RDLLLISAIACVGRWAIIGAI-------------EAFPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYN 334 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHH
Confidence 999988888877777666543 223455556666776666555443 5555677 8889999999986
Q ss_pred H-HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 431 C-NNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 431 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
. ...++..+++.+.|.+.|+.+...++..+++.+
T Consensus 335 ~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 335 ALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4 567889999999999999988765655555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=222.29 Aligned_cols=368 Identities=13% Similarity=0.096 Sum_probs=242.2
Q ss_pred HhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-----c
Q 010433 37 GSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----G 111 (511)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----G 111 (511)
++..|+..+..... +|.+.++- |+|.+++|++..+... .+..+++|+++||+ |
T Consensus 8 ~~~~~~~~~~~~~~--~~~~l~~~------------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g 65 (402)
T PRK11902 8 GFASGLPLALTSGT--LQAWMTVE------------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG 65 (402)
T ss_pred HHHHhhhHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC
Confidence 35555666655544 67777665 8999999999777776 69999999999999 8
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHH
Q 010433 112 RRA-SIMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILV 187 (511)
Q Consensus 112 rr~-~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 187 (511)
||| .+..+.++.+++..+.++. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++
T Consensus 66 ~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 66 RRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV 145 (402)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence 875 7888888888888887776 457888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 010433 188 ANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA 267 (511)
Q Consensus 188 g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (511)
++.++..+... ..|||..|++.++..++..+..+++||+++. +++.++. .
T Consensus 146 g~~l~~~l~~~-~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~--------------------~------ 195 (402)
T PRK11902 146 SGGLALWLADR-VLGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSL--------------------G------ 195 (402)
T ss_pred HhHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchh--------------------H------
Confidence 99885544331 2489999999888777665555667776431 0000000 0
Q ss_pred HhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 010433 268 RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITG-IALCIAALISMAFVD 346 (511)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d 346 (511)
++.+++++++++++..+....... +...... .......+.+.+++|+++.+.+......+ ++.+++.++.+++.|
T Consensus 196 ~~~~~~~~~l~~~~~~~~~l~~~~-l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~ 271 (402)
T PRK11902 196 EAVVGPLRDFFSRRGAWALLLLIV-LYKLGDA---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMV 271 (402)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHH-HHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 001123556677776655443322 1111111 11122334445668999999998876554 468899999999999
Q ss_pred hcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHH----HHHHHHhcccccccceeecccCCccch
Q 010433 347 KFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVIC----LFVLAYGRSWGPLGWLVPSELFPLEMR 422 (511)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~ 422 (511)
|+++|+.+..+..+..+..+.+...... .+..+....... ..+...+ ........++.+.+|.+.
T Consensus 272 r~g~~~~l~~~~~~~~l~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~- 340 (402)
T PRK11902 272 RLGLYRSLMLFGVLQAVSNLGYWVLAVT---------PKHLWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQ- 340 (402)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHH-
Confidence 9999987766555544443333221110 011222222222 1222222 222333445556666554
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhcc
Q 010433 423 SAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 423 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
.++.+....++...++.+.|.+.+..|+...+...+++.+.+++.....
T Consensus 341 ---~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 341 ---YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555667777777889999999998877776666665555554333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=223.06 Aligned_cols=326 Identities=12% Similarity=0.071 Sum_probs=225.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchh----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR----ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......+++++.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 88999999999999999999999999999999984 3333222221 22334446889999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhc
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~ 234 (511)
|...+++.++ .++|+++++......++|.++||++++.+.. .+|||..|++.++..++..+...+.||.++ +
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~--~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~ 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS--WFGEQAILWILTAGVASMLLGQLLRPTIMP----Q 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHHHHHHHccCCCCC----c
Confidence 9888888877 4568889999999999999999999766543 358999998877655544444444454321 0
Q ss_pred CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH
Q 010433 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (511)
++.++ +.++...++++++|++..+......+ ...........+.|.+.+
T Consensus 185 ~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~ 233 (382)
T PRK11128 185 GESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVS-----LLQGSHAAYYGFSAIYWQ 233 (382)
T ss_pred ccccc--------------------------ccccccchHHHHHcChhHHHHHHHHH-----HHHHHhHhHHHHHHHHHH
Confidence 00000 00001234567777766554433222 122223445556677888
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010433 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 394 (511)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+.|.++.+.+.......+..++..++.+++.||+++|+.+..+.....+..+.+... +..+..++..
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 300 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALPWLIVIQ 300 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHHHHHHHH
Confidence 899999999999998889999999999999999999998887777666655444332 2234445555
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCN-NLLFTALIAQAFLAALCHLKFGIFLVFG 460 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (511)
++.+.+.+...... ..+..+. +++++++..++.+.. ...+..++|.+.|.+.|..+...++..+
T Consensus 301 ~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~ 365 (382)
T PRK11128 301 ILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMA 365 (382)
T ss_pred HHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 55555555443333 4444555 556678888887644 4566689999999999988765444333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=221.13 Aligned_cols=349 Identities=11% Similarity=0.037 Sum_probs=229.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcch-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR-RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|++..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.+...+..
T Consensus 34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (418)
T TIGR00889 34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALT 113 (418)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHH
Confidence 8899999999999999999999999999999965 778888888888888888899999999999999999887777766
Q ss_pred hhHhHhc--------CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChh
Q 010433 158 PLYLSEM--------APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 229 (511)
Q Consensus 158 ~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~ 229 (511)
.++..++ .....|.+..| .+|.+++|.+++.... ...|+ +|++.++..++..+..+++||+|+
T Consensus 114 ~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~--~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~ 184 (418)
T TIGR00889 114 NSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI--ELSNI-QLYITAGSSALLGVFALTLPDIPV 184 (418)
T ss_pred HHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc--cchhH-HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 6654322 22234455555 3677777777654421 12354 455666655555555667888763
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcH
Q 010433 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (511)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
. +++++. +. + +..+.+.++.+|++..+...+..+ ...........+.
T Consensus 185 ~---~~~~~~-------------------~~-----~-~~~~~~~~~~~k~~~~~~~~~~~~-----~~~~~~~~~~~~~ 231 (418)
T TIGR00889 185 A---KSTAKM-------------------SI-----K-VMLGLDAFILFKNKRMAIFFFFSM-----LLGAPLQITNIFG 231 (418)
T ss_pred C---cccccc-------------------CH-----H-HHhhhhHHHHhcCCCeeeHHHHHH-----HHHhHHHHHHHhH
Confidence 1 000000 00 0 000112344566665544433222 1122223344566
Q ss_pred HHHHHHcCCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 010433 310 PVIFQSLGFGS--------GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 381 (511)
Q Consensus 310 ~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (511)
|.++++.|.++ ...+...+...+..+++.+..+++.||+|+|+.+..+.++..+...++....
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~--------- 302 (418)
T TIGR00889 232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD--------- 302 (418)
T ss_pred HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 77777766543 5668888889999999999999999999999998888777666654443321
Q ss_pred CCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcc------hh
Q 010433 382 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLK------FG 454 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~------~~ 454 (511)
......+..++..++.+.+.+.. .+....++.|.+|++.|++++|+.+ ....++..++|.+.|.+.++.+ +.
T Consensus 303 ~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 303 PEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 00001122333344444444433 2333455689999999999999997 5678899999999999998753 44
Q ss_pred h-HHHHHHHHHHHHHHHHhccccCCC
Q 010433 455 I-FLVFGGLVVIMSAFIYFFLPETKQ 479 (511)
Q Consensus 455 ~-~~~~~~~~~~~~~~~~~~~~~~~~ 479 (511)
. +...+++..+.+++.+++.+++++
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4 334444445555556666665543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=222.17 Aligned_cols=348 Identities=14% Similarity=0.066 Sum_probs=212.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHH---HhhH-----HHHHHHHHHHHHhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CAVH-----ISMLLLGRIFLGMGI 150 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~~-----~~~l~~~r~l~G~~~ 150 (511)
|++..+.|++.+++.+++.++++++|+++||+|||++++.+..+.+++..... .++. ....++.+++.|.+.
T Consensus 42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (420)
T PRK09528 42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF 121 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88999999999999999999999999999999999999887666554433221 1111 111222333334333
Q ss_pred hhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc-cCChh
Q 010433 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPN 229 (511)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~ 229 (511)
....+....+..+ . .+++++.++......++|..++|++++.+.. .+|+..|++.++.+++..+..+++ +|.++
T Consensus 122 ~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 122 LAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN---INPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred ccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh---cCchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 3333333333322 2 3567888899999999999999999776653 379999999888877766555444 33321
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcH
Q 010433 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (511)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
... + ++++. .+ +++...+...+.+|++..+...+... .. ...+.....+.
T Consensus 197 ~~~-~-~~~~~---------~~--------------~~~~~~~~~~~~l~~~~~~~l~l~~~-~~----~~~~~~~~~~~ 246 (420)
T PRK09528 197 TAK-V-ANALG---------AN--------------ASAVSLKDALALLKLPKFWFLVLYVI-GV----ACFYDVFDQQF 246 (420)
T ss_pred hhh-h-ccchh---------cc--------------cccccHHHHHHHccCCCeEeehHHHH-HH----HHHHHHHHHHH
Confidence 000 0 00000 00 00000111234555665544332221 11 11122222334
Q ss_pred HHHHHH----cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 310 PVIFQS----LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 310 ~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
|.++.+ .+.+..+.+.......+...++.++.+++.||+++|+.+..+..+..+..++..+. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------------~ 313 (420)
T PRK09528 247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------------T 313 (420)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------c
Confidence 444432 35666777888888889999999999999999999998887777666655554432 1
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV-VVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
..+..+....+.+....... +....+..|.+|++.+++..+. .+....++..+++.+.|.+.|..|+...+...+++.
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~ 392 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLL-VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIV 392 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 12333333333333333222 2223455688899989887665 567788999999999999999888766555544444
Q ss_pred H-HHHHHHhccc
Q 010433 465 I-MSAFIYFFLP 475 (511)
Q Consensus 465 ~-~~~~~~~~~~ 475 (511)
+ ...+.....+
T Consensus 393 ~i~~~~~~~~~~ 404 (420)
T PRK09528 393 LLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHhc
Confidence 3 3334443333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=209.07 Aligned_cols=341 Identities=14% Similarity=0.100 Sum_probs=220.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+.+....|.+.|.|.+++.+.++.+|.++||+|||++++.|++..+++.++.+++.|+..++++|++.|+..| ...+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3467788999999999999999999999999999999999999999999999999999777778999999887 566889
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH----HHHHHHH-HHHHhccccCChhHHHh
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGL----ATVPATL-MFVGGLFLPETPNSLVE 233 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~----~~~~~~~-~~~~~~~~~esp~~l~~ 233 (511)
++++|.+++++|+++++..+..+++|.++||.+|+.+.......=+.+|.. ..+.... .....+++||+-. .
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~ 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---L 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---c
Confidence 999999999999999999999999999999999887776211111222322 2222222 2334677899832 1
Q ss_pred cCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcc-CChHHhhccCCchhH--HHHHHHHHHHhhhcchhhHHhcHH
Q 010433 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIK-NPFRNLFKKKNRPQL--VIGALGIPAFQQLTGMNSILFYAP 310 (511)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
+++.++... ..+..+...+..+.+ .......+++..... ....+.+..+..+..+....++.+
T Consensus 220 rk~~~~~~~--------------~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~ 285 (451)
T KOG2615|consen 220 RKRNDEHST--------------LQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVL 285 (451)
T ss_pred hhhcccccc--------------hhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 221111000 000000000000000 000111222221111 111111333333333334444444
Q ss_pred HHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010433 311 VIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIG 387 (511)
Q Consensus 311 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
.+. ..+|+++.+.|.+....++...+.+....+..+|.+ .+..+..+..++.-..+++... ..+
T Consensus 286 ~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------------~~~ 352 (451)
T KOG2615|consen 286 FLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------------RTP 352 (451)
T ss_pred HhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------------ccc
Confidence 433 458999999999999999988888887777777765 3433433333333332222221 222
Q ss_pred HHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 388 IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
..+.....+..+......+.+ ..++....|+++||+.+|+....+.++-+++|.+.|.+..+.
T Consensus 353 ~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred hhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 333344444444444444444 455578889999999999999999999999999998876544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=216.63 Aligned_cols=320 Identities=13% Similarity=0.087 Sum_probs=216.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-----chhHH-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRAS-IMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMG 149 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 149 (511)
|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++..+.++. .+.+.+....++.+++
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~ 96 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF 96 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 8999999999755 555555 99999999998 89886 567788888887777777 5667778888889999
Q ss_pred hhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCC------ccchHHHHHHHHHHHHHHHHhc-
Q 010433 150 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP------WGWRLSLGLATVPATLMFVGGL- 222 (511)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~------~~wr~~f~~~~~~~~~~~~~~~- 222 (511)
.+...++..+++.|++|+++|+++.++...+..+|.++++.++..+..... ++||..|++.++..++..+..+
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999654443221 2399999999887777655544
Q ss_pred cccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcch
Q 010433 223 FLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGM 302 (511)
Q Consensus 223 ~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
..||+++. +++.++ + .++.+.+++++++++..++...... ..+.....+
T Consensus 177 ~~~e~~~~---~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 225 (356)
T TIGR00901 177 LAKEPQED---ASVPKP----------------L----------TQAVLKPIREFFQRKNMIQALLLLL--LIVLYKLGD 225 (356)
T ss_pred hccCCCcc---cccchh----------------H----------HHHHHHHHHHHHHhcCchHHHHHHH--HHHHHHHHH
Confidence 35664320 000000 0 0001123445555554333332222 233334445
Q ss_pred hhHHhcHHHHHHHcCCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 010433 303 NSILFYAPVIFQSLGFGSGAALYSSVITG-IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 381 (511)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (511)
+....+.|.+++++|+++.+.+......+ +..+++.++.+++.||+|+|+.+..+.++..+...+........ ...+
T Consensus 226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~- 303 (356)
T TIGR00901 226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG-HHDG- 303 (356)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-cccc-
Confidence 56677888888889999999888887666 57789999999999999999888777766655544433321000 0000
Q ss_pred CCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHH
Q 010433 382 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNL 434 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 434 (511)
.+....+.......+..++.+... +....+..|.+|+++||+.+|+.+...+
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 ITFPHLLMLFLTITLEAVTGGLGT-VAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 000122333334444444444344 3345666899999999999999877653
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=246.14 Aligned_cols=325 Identities=11% Similarity=0.005 Sum_probs=224.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 445689999999999999999999999999999999998877666655544 45789999999999999999999999
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC-------CccchHHHHHHHHHH-HHHHHHhccccCChh
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-------PWGWRLSLGLATVPA-TLMFVGGLFLPETPN 229 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~-------~~~wr~~f~~~~~~~-~~~~~~~~~~~esp~ 229 (511)
.+++.|++|+++|++++++...+..+|.++|+++++.+.... ..+|++.+.+..+.. ++.++..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999987665430 113444444433333 333444556788764
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcH
Q 010433 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (511)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
+...+.+.++ ... .+.....++.+++++..+...+.. +...........+.
T Consensus 205 ~~~~~~~~~~--------------~~~----------~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 255 (1146)
T PRK08633 205 AAPEVFDKKK--------------YLF----------PKLLWRNLKLLRSDRVLWLAIIGL-----SYFWFISQLAQANF 255 (1146)
T ss_pred CCcccccccc--------------ccc----------HHHHHHHHHHHhcCcHHHHHHHHH-----HHHHHHHHHHHHhh
Confidence 2111000000 000 000011234455554443332222 22222333445566
Q ss_pred HHHH-HHcCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010433 310 PVIF-QSLGFGSG-AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIG 387 (511)
Q Consensus 310 ~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
|.++ +.+|++.. ..+++....+++.+++.++.+++.||+++++.+.++.++.+++.+++.... ..
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 322 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP-------------SL 322 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-------------hH
Confidence 7666 45899988 899999999999999999999999999988877776666555554444321 12
Q ss_pred HHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 388 IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
+..++..++++++.+....+ ...++.+..|++.||+++|+.+.+..++..+++.+.+.+.
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLFIVP-LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455554444433 3555578899999999999999999988877766665543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=211.75 Aligned_cols=344 Identities=12% Similarity=0.068 Sum_probs=220.8
Q ss_pred cCCchH-HHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQV-LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~-~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|++.+| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|... +.
T Consensus 57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~ 135 (511)
T TIGR00806 57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AY 135 (511)
T ss_pred CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH---HHHHHHHHHHhccccCChhHHHhc
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLA---TVPATLMFVGGLFLPETPNSLVEQ 234 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~---~~~~~~~~~~~~~~~esp~~l~~~ 234 (511)
..++..|+|+++|+++.++..++..+|.+++++++..+ ..+|||+.+.+. .....+.++..+++|..++.+.-+
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll---~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~ 212 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL---VTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN 212 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence 99999999999999999999999999999999997662 345898765443 333334455677888666544444
Q ss_pred CCHHHHHHHHHHHhCCCcchH--HHHHHH-HHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHH
Q 010433 235 GKLDEARKVLEKVRGTANVDA--EFSDLI-DASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 311 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
++.+.......+.....+.+. ..+..+ .....-+.....+++..+++.....- +.+.....+++...+|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WS-----lWwa~a~~g~~qv~~Y~Q~ 287 (511)
T TIGR00806 213 RLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWS-----LWWVFNSAGYYLITYYVHT 287 (511)
T ss_pred cccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhh-----HHHHHHhhHHHHHHHHHHH
Confidence 322110000000000000000 000000 00000011122233344444332222 2344455566667777766
Q ss_pred HHHHcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHH
Q 010433 312 IFQSLGFG-SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 390 (511)
Q Consensus 312 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
+.++..-+ +.-.|..-.+..+.+.+..+..|++-.++.+...+.++.....-+.+++.... .++.|..
T Consensus 288 LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~-----------t~~Iw~~ 356 (511)
T TIGR00806 288 LWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ-----------SHDIWVL 356 (511)
T ss_pred HHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc-----------ccchHHH
Confidence 66654322 22456666777777888888899886555433333333332222222222211 2345666
Q ss_pred HHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 010433 391 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQA 443 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 443 (511)
.+..+++...+....+.....+ +.....+.-|...|+.+++..+...+...+
T Consensus 357 Y~~yvlf~~~y~flitia~~~i-A~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 357 YVTYVLFRGIYQFLVPIATFQI-ASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 6777777777665554443444 344455656888888777666655554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=230.58 Aligned_cols=372 Identities=19% Similarity=0.205 Sum_probs=261.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLG-RIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~ 157 (511)
+-+..+++|+.++....+.+.+++.+.+.||+|.|++.+.|.++.+++.++.+|++++|++++. -++.|+|.|..+...
T Consensus 77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~pa 156 (509)
T KOG2504|consen 77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPA 156 (509)
T ss_pred CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcch
Confidence 7788899999999999999999999999999999999999999999999999999999988885 588999999999999
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc-cCChhHHHhcCC
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLVEQGK 236 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~ 236 (511)
..++..|| +++|+.+.|+..++.++|.++-|++.- ...+..|||..+++.+.+.+-.++....+ |.+++....
T Consensus 157 iviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~--~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--- 230 (509)
T KOG2504|consen 157 VVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLK--YLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--- 230 (509)
T ss_pred hhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHH--HHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---
Confidence 99999998 588999999999999999999998843 34445699999999888887665554433 333321000
Q ss_pred HHHHHHHHHH------------HhCCC-cch----HHHHHHHHHHHHHH--hccCCh----HHhhccCCchhHHHHHHHH
Q 010433 237 LDEARKVLEK------------VRGTA-NVD----AEFSDLIDASNAAR--AIKNPF----RNLFKKKNRPQLVIGALGI 293 (511)
Q Consensus 237 ~~~~~~~~~~------------~~~~~-~~~----~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~ 293 (511)
.++..+.... ....+ ... .+.....+...+.+ ..+... .++++++.+. ... +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl----~~~-~ 305 (509)
T KOG2504|consen 231 EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFL----LLA-L 305 (509)
T ss_pred hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHH----HHH-H
Confidence 0000000000 00000 000 00001111000000 111111 2455553322 222 4
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChh--HHHhhhHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA--FFLEAGTEMIIYMVIVAIT 371 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~ 371 (511)
...+...++.....++|.+.++.|++..++..+.++.++..++++++.|++.|+...++ ....+.+..++....+...
T Consensus 306 ~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 55566667778888999999999999999999999999999999999999999987443 3333444444443233222
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 372 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
...+.++....+++...+ .+..+...++.|+.+.+.-..+.|+...+..++..++|++.|.+.|..
T Consensus 386 -------------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t 451 (509)
T KOG2504|consen 386 -------------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT 451 (509)
T ss_pred -------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence 112334444444444443 333444455679999999999999999999999999999999998888
Q ss_pred c-hhhHHHHHHHHHHHHHHHHhccc
Q 010433 452 K-FGIFLVFGGLVVIMSAFIYFFLP 475 (511)
Q Consensus 452 ~-~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
+ |...+.+.+++.+.+...++..+
T Consensus 452 g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred CCeeeehhhcChHHHHHHHHHHHhH
Confidence 7 77777777777777776666655
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=217.83 Aligned_cols=343 Identities=15% Similarity=0.121 Sum_probs=248.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhhhhhhh
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~ 155 (511)
|+..++++.++..+...+.++++|.++||++||++++.+.++.++..+..++. .+.+.+++.-++.|++.+...|
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999998887666554443 4688999999999999999999
Q ss_pred hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcC
Q 010433 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG 235 (511)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~ 235 (511)
+..+++.|..|+++...++++.+...++..++||.+++.+... .|-.+.|.+.++..++.......++..++ .++
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~--~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~ 197 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF--FGAAAAFLINALSFLISILALLRWKPPPP---PSS 197 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccc---ccc
Confidence 9999999999999999999999999999999999998766543 36677888877766655444333332210 000
Q ss_pred CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHH-
Q 010433 236 KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ- 314 (511)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (511)
..+| ...++.+..++-+.+++..+..+.... ............+|.+.+
T Consensus 198 ~~~e-------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~-----~~~l~~~a~~aLlPl~a~~ 247 (524)
T PF05977_consen 198 LPRE-------------------------RFFSALREGLRYVRSSPPLRSVLLRSF-----LFNLFASAVWALLPLFARD 247 (524)
T ss_pred cchh-------------------------hhhhhHHHHHHHHhcchHHHHHHHHHH-----HHHHhhhHHHHhhhHHHHH
Confidence 0000 000111223333334443333222111 111222334456788775
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010433 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 394 (511)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
.+|.++...|++.+..+++.++|.++.+++.+|+++++.+..+.+..+++++.+.+. ...+......
T Consensus 248 ~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~l 314 (524)
T PF05977_consen 248 VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIAL 314 (524)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHHH
Confidence 489999999999999999999999999999999999888877777666665555443 2234445555
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHh
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 472 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
++.+.+........ .+...+..|++.||+++++.++....+..++..+.|.+.+..+....+..++++.+++.++..
T Consensus 315 ~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 315 FLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443333 445578899999999999999999999999999999999998866666666555544444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=246.26 Aligned_cols=334 Identities=13% Similarity=0.053 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 010433 83 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV---GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (511)
Q Consensus 83 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~---~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 159 (511)
...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.....++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 567889999999999999999999999999997633 32333333334444589999999999999999999999999
Q ss_pred HhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHH
Q 010433 160 YLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239 (511)
Q Consensus 160 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~ 239 (511)
++.+++++++|++++++.+++.++|.++||++++.+... .+|++.|+..++..++.+++.+++|+++.. .++...+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS--GNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeec
Confidence 999999999999999999999999999999998776553 489999965556555555566667765420 0000000
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCC
Q 010433 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGF 318 (511)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 318 (511)
. ... ++....++.+.+++..+...+. .+..+.....+..+.|.++++ +|.
T Consensus 208 ---------------~--~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 208 ---------------R--NII-------RSTITLLKYAKADKRIWLAILG-----ISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred ---------------c--chH-------HHHHHHHHHHhcCchHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 000 0001234455555554443322 222223334556678888865 799
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHh-hcCCCC------CCCcchhHHHH
Q 010433 319 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL-EFGEGK------PLPKGIGIFLV 391 (511)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~ 391 (511)
++...+++.+..+++.+++.++.+++.++..+++.+..+.++..+..+.+.+.... ...... .......+...
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 99999999999999999999999999988776665555544444433333221000 000000 00001223344
Q ss_pred HHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 392 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
+..++++++.+....+ ..+++.+..|++.+|+++|+.++...++..+++.+.+.+.+.
T Consensus 339 ~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 339 IDLFGLAAAGGLYIVP-LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555554444434 355667999999999999999999999999999999888753
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-26 Score=227.09 Aligned_cols=301 Identities=14% Similarity=0.151 Sum_probs=213.9
Q ss_pred HHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 010433 34 AMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR 113 (511)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 113 (511)
++..+......+.++.+ ++.+.++| +++..+.|++.+.+.++++++.++.|+++||+|||
T Consensus 39 ~~~~~~~~~~~g~~~~~--l~~iek~F------------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~ 98 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSS--LTTIERRF------------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP 98 (633)
T ss_pred HHHHHHHHHHHHHHHhh--chhhhhhh------------------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc
Confidence 34555556666666665 68888888 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------------------------------------------------HHHHHHHH
Q 010433 114 ASIMVGSVSFFIGAILNACAV---------------------------------------------------HISMLLLG 142 (511)
Q Consensus 114 ~~l~~~~~l~~~~~~~~~~~~---------------------------------------------------~~~~l~~~ 142 (511)
+++.++.++++++++++++.+ .+..++++
T Consensus 99 ~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (633)
T TIGR00805 99 IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVS 178 (633)
T ss_pred eEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHH
Confidence 999999999999999998764 24577899
Q ss_pred HHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC-C-------------------cc
Q 010433 143 RIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-P-------------------WG 202 (511)
Q Consensus 143 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~-~-------------------~~ 202 (511)
|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++...... . .+
T Consensus 179 r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGa 258 (633)
T TIGR00805 179 QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGA 258 (633)
T ss_pred HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHH
Confidence 999999999999999999999999999999999999999999999999977655321 0 13
Q ss_pred chHHHHHHHHHHHHHHHHhccccCC-hhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccC
Q 010433 203 WRLSLGLATVPATLMFVGGLFLPET-PNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKK 281 (511)
Q Consensus 203 wr~~f~~~~~~~~~~~~~~~~~~es-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (511)
|+..|++.+++.++..+.++++|++ |+.. .+.+.++.++. ... ..+.+.. .+ .....++.....+.+++++
T Consensus 259 Wwl~Fli~g~l~~l~~v~l~~~p~~lp~~~-~~~~~~~~~~~--~~~-~~~~~~~-~~---~~~~~~~~~~~~~~Ll~n~ 330 (633)
T TIGR00805 259 WWIGFLICGGVALLTSIPFFFFPKALPKEG-KRVNVDVHETE--KLE-KSEDKSR-KK---NSDITKDFPKIIKRLLCNP 330 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCcc-cccchhhhhhh--ccc-ccccccc-hh---hhhhHHHHHHHHHHHHcCc
Confidence 7888998888887766655666654 3110 00000000000 000 0000000 00 0000111123345666666
Q ss_pred CchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhcCC--hhHHHhh
Q 010433 282 NRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI-ALCIAALISMAFVDKFGR--RAFFLEA 357 (511)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~ 357 (511)
..+... +..+......+.+..|+|.++++ +|+++.+++.+.....+ +.+++.+++|+++||++. |+.+..+
T Consensus 331 ~f~~~~-----l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~ 405 (633)
T TIGR00805 331 IYMLVI-----LAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFA 405 (633)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHH
Confidence 433332 34444555667788899999965 89999999998887766 568899999999999984 4555555
Q ss_pred hHHHHHHHHH
Q 010433 358 GTEMIIYMVI 367 (511)
Q Consensus 358 ~~~~~~~~~~ 367 (511)
.....++.+.
T Consensus 406 ~~~~~~~~~~ 415 (633)
T TIGR00805 406 ICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=211.94 Aligned_cols=339 Identities=12% Similarity=0.108 Sum_probs=219.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHH---HHh-----hHHHHHHHHHHHHHhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACA-----VHISMLLLGRIFLGMGI 150 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~-----~~~~~l~~~r~l~G~~~ 150 (511)
|++..+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.... .+. +.+..+++.|++.|++.
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999988776665544322 111 22344567788899988
Q ss_pred hhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhcc-ccCChh
Q 010433 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPETPN 229 (511)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~ 229 (511)
+...+....+..|.. +++++.++......++|.+++|++++.... .+||.+|++.+++.++..+..+. .||+|+
T Consensus 114 ~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (396)
T TIGR00882 114 SAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS---IDPQIVFWLGSGFALILMLLLMFAKPKAPS 188 (396)
T ss_pred ccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 888888887777753 344567788888889999999999665543 48999999988887776554443 444432
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcH
Q 010433 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (511)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
. ++.+++ .+.+ +++.+..+..+.+|++..+...+. .+.....+.....+.
T Consensus 189 ~----~~~~~~-------~~~~--------------~~~~~~~~~~~~l~~~~~~~~~l~-----~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 189 S----ATVANA-------LGAN--------------ASAFSLKLALELFRQRKFWMFVLY-----VVGVACVYDVFDQQF 238 (396)
T ss_pred h----hhhhcc-------cccc--------------cCCCCHHHHHHHHcCCcHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 1 000000 0000 000001224556666654333221 122222233333455
Q ss_pred HHHHHHc----CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 310 PVIFQSL----GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 310 ~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
+.++++. +.+....+.......+...++.+..+++.||+++|+.+..+..+.++...+.... .
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------------~ 305 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------------T 305 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------------C
Confidence 6665542 4555667888888888899999999999999999998887776666655443321 1
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV-VVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
..+.......+.+.+..... .....+..+..|++.++++.+. .+....+++.+++.+.|.+.+..|+...+.+.+++.
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~ 384 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIV 384 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHH
Confidence 22333333333333332221 1223344566788888887766 567889999999999999999888765555544444
Q ss_pred HH
Q 010433 465 IM 466 (511)
Q Consensus 465 ~~ 466 (511)
++
T Consensus 385 ~i 386 (396)
T TIGR00882 385 LL 386 (396)
T ss_pred HH
Confidence 33
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-25 Score=195.76 Aligned_cols=358 Identities=15% Similarity=0.166 Sum_probs=263.5
Q ss_pred HHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHH
Q 010433 36 GGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRAS 115 (511)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 115 (511)
-.++.|+......+. +|.+++.| +++..|.+++..+++.++.+.+++.|++.+|+|+|+.
T Consensus 21 lFfl~G~~~~l~diL--ip~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g 80 (422)
T COG0738 21 LFFLWGFITCLNDIL--IPHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG 80 (422)
T ss_pred HHHHHHHHhhcchhh--HHHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH
Confidence 346667777666665 78888888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 010433 116 IMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (511)
Q Consensus 116 l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 192 (511)
++.|+.++++++.+.. -..+|..++++-++.|.|.+...+.+..+++...++++..+.+.+.+..+++|.+++|+++
T Consensus 81 i~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 81 IVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999884 5578999999999999999999999999999999998889999999999999999999997
Q ss_pred HhhcccC-----------------CccchHHHHHHHHHHHHHHHHhcc--ccCChhHHHhcCCHHHHHHHHHHHhCCCcc
Q 010433 193 YGTEKIH-----------------PWGWRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANV 253 (511)
Q Consensus 193 ~~~~~~~-----------------~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (511)
..+.... ...||++|...+...++..+.... .|+.+.- .
T Consensus 161 ~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~----------------- 218 (422)
T COG0738 161 SSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-----A----------------- 218 (422)
T ss_pred HHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----c-----------------
Confidence 6655510 124888888887777666554433 4543310 0
Q ss_pred hHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH
Q 010433 254 DAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (511)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 332 (511)
.+..+..+....++++++..+... +..++....-.....|++.++.+ .|.+..++....+....
T Consensus 219 ----------~~~~~~~~~~~~~l~~~~~~~~gv-----l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~ 283 (422)
T COG0738 219 ----------PSLGASGSAGLSSLFQNKHLRLGV-----LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWV 283 (422)
T ss_pred ----------ccccccccchHHHHHhChHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 000000011356667766654444 45555666667778889999877 89999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccccee
Q 010433 333 ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 412 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (511)
+.++|++++.++..|+...|.+.....+..+.++...+.. + ...+....+.+...+..++.+ +..
T Consensus 284 ~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~------------g--~v~~~~l~~ig~F~simfPTI-fsl 348 (422)
T COG0738 284 GFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG------------G--VVALYALFLIGLFNSIMFPTI-FSL 348 (422)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc------------C--hHHHHHHHHHHHHhHHHHHHH-HHH
Confidence 9999999999999999988887765554444444443331 1 233344444555555556444 555
Q ss_pred ecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHH
Q 010433 413 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLV-FGGLVVIMS 467 (511)
Q Consensus 413 ~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 467 (511)
..+..| ++...+.+ .......|+++.|++.|++.|..+...... ....|.+..
T Consensus 349 al~~l~-~~ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 349 ALKNLG-EHTSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHhccC-ccccccce-eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 557777 33433333 335667899999999999999988544333 444444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-24 Score=187.59 Aligned_cols=325 Identities=17% Similarity=0.140 Sum_probs=250.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.+.+...+..+
T Consensus 43 gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLP 121 (395)
T COG2807 43 GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLP 121 (395)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999998887 788889999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 238 (511)
.++.+.|| |+-+..++++.+..++|..+++.++..+.... .+||....+.+.++++.++.++.-. .|. +
T Consensus 122 slIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq~--~r~-----~-- 190 (395)
T COG2807 122 SLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQA--LRE-----Q-- 190 (395)
T ss_pred HHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhhc--ccc-----c--
Confidence 99999996 66799999999999999999988865554443 4799999999999988877654321 110 0
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCC
Q 010433 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGF 318 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (511)
....+.+..+..+++|++.-|... +++..+...+|....|+|.++.+.|+
T Consensus 191 -------------------------~~~~~~~~~~~~~vw~~~~aW~vt-----LfmGlqS~~~Y~~~~WLP~ili~~G~ 240 (395)
T COG2807 191 -------------------------AASIATKLVSVRKVWRSPLAWQVT-----LFMGLQSLLYYIVIGWLPAILIDRGL 240 (395)
T ss_pred -------------------------ccccccccccccccccCchhHHHH-----HHHHhhHHHHHHHHHHHHHHHHHcCC
Confidence 001111123345567776655544 55667777889999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHH
Q 010433 319 GSGAALYSSVITGIALCIAALISMAFVDKFG-RRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLF 397 (511)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (511)
|+.++|.+.+...+..++.++....+.+|.. +|+.......++.++.+.+.+.. ....+.. +.+.
T Consensus 241 sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P-----------~~~~~lw---~~ll 306 (395)
T COG2807 241 SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP-----------GQLPILW---ALLL 306 (395)
T ss_pred CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh-----------hhHHHHH---HHHH
Confidence 9999999999999999999999999999764 55555555566666666665432 1222222 2444
Q ss_pred HHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHH
Q 010433 398 VLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVF 459 (511)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 459 (511)
+.+.+..++-....+..+.-.++..+.-.|+.+.++++....+|.++|.+.|..| +...+..
T Consensus 307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 4444434432223333344456677888999999999999999999999999987 4433333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=203.81 Aligned_cols=335 Identities=13% Similarity=0.054 Sum_probs=235.4
Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhh
Q 010433 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 75 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
....+-+++++|++.+++.+.+.+.+++.|.+.||+|+|..+++|++....+++++++..+|+.++++|.+||+|.++..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 34556688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCC-CCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc-cCChhHHH
Q 010433 155 QAVPLYLSEMAPAK-IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLV 232 (511)
Q Consensus 155 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~l~ 232 (511)
+++.++++|.+|++ +|++++|+.-.+.++|.++||+.|+.++.. .|.+.+|++.++++++...+.+++ +.+..
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~--~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~--- 252 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF--AGKSAPFLVLAIVLLLDGALQLLVIEPTEM--- 252 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh--cCCcCcHHHHHHHHHHHHHHHHheeCcccc---
Confidence 99999999999865 479999999999999999999997666654 589999999999999887765554 33221
Q ss_pred hcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHH
Q 010433 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (511)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (511)
+ ++...+..++.++++.+....... ...+.+ ......--.++.+
T Consensus 253 -~------------------------------~~~~~~~~~~~~Ll~dP~I~~~ag----ai~~~n-~~lafLePtlslw 296 (464)
T KOG3764|consen 253 -D------------------------------PDSTEQGTPMWSLLMDPYILLIAG----AITFSN-SSLAFLEPTLSLW 296 (464)
T ss_pred -C------------------------------ccccccCccHHHHHhCchHhhhhc----chhhcc-chHHHhCcccHHH
Confidence 0 001222455677777765332221 111211 1222222223343
Q ss_pred H-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH--hhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHH
Q 010433 313 F-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL--EAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 389 (511)
Q Consensus 313 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
. +++..+..+.|+.+....+...++..+.|.+.||++..+.+. .+.+...+......+.... ...|.
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~----------~~L~v 366 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI----------AQLWV 366 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH----------HHHhh
Confidence 3 556655558999999999999999999999999999443333 2333333222222222111 11222
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 010433 390 LVIVICLFVLAYGRSWGPLGWLVPSELFPLE---MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGG 461 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (511)
.....++.+........|.....+ +.-..+ .-|...++......++.+++|.+.|.+.+..|+.+.....+
T Consensus 367 p~~~l~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig 440 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTLGYLV-DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIG 440 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHhc-chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHH
Confidence 222233333223333333322222 322223 56888999999999999999999999999998655443333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=214.70 Aligned_cols=327 Identities=16% Similarity=0.124 Sum_probs=220.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----cchh-HHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHH
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRR-ASIMVGSVSFFIGAILNACAVH------ISMLLLGRIFLG 147 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G 147 (511)
|+++.++|++.++..+..++.+|+.|+++|| +||| +.++.+..+.+++.+++.+.++ ...+++.+++.+
T Consensus 31 g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (437)
T TIGR00792 31 GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLG 110 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 8899999999999999999999999999997 6774 4677888888888888777653 466777889999
Q ss_pred hhhhhhhhhhhhHhHhcC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHH-
Q 010433 148 MGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLSLGLATVPATLMFVG- 220 (511)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~- 220 (511)
++.+...++..++..|.. +++||++..++.+.+..+|..+++.+...... .+..+||+.+.+.++++++..+.
T Consensus 111 ~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 111 LFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC 190 (437)
T ss_pred HHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 999988888888999987 46889999999998888887776655332221 12458999999998888776554
Q ss_pred hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhc
Q 010433 221 GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300 (511)
Q Consensus 221 ~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
.+..||+++. .+.++ +++.+.++.++.+++++..+.... ..+....
T Consensus 191 ~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~ 236 (437)
T TIGR00792 191 FFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKALFKNDQLLILCL-----AYLFYNL 236 (437)
T ss_pred HcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHHhCCHHHHHHHH-----HHHHHHH
Confidence 4566775410 00000 000000112344455544333222 2222222
Q ss_pred chhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCC
Q 010433 301 GMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG 379 (511)
Q Consensus 301 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (511)
.......+.+++.+. ++ ++...+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------- 308 (437)
T TIGR00792 237 AFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG------- 308 (437)
T ss_pred HHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 233333344444433 34 445666677777899999999999999999999988887776666555443320
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 380 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-------LEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
+..+...+...+.+.+.+... +..+.+.+|..+ ++.+|...|+.+....++..+++.+.+.+.+..|
T Consensus 309 -----~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 309 -----SNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112233333344444443332 334455556644 4567999999999999999999999999988665
Q ss_pred h
Q 010433 453 F 453 (511)
Q Consensus 453 ~ 453 (511)
+
T Consensus 383 ~ 383 (437)
T TIGR00792 383 Y 383 (437)
T ss_pred C
Confidence 4
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=203.87 Aligned_cols=375 Identities=17% Similarity=0.138 Sum_probs=228.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------VHISMLLLGRIFLGMGIGF 152 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~ 152 (511)
|+|..+++++.++. .....++++.|+++||+|||+++.++.++++++.++++++ ++++.+++.|++.|+|.+.
T Consensus 58 gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~ 136 (591)
T PTZ00207 58 NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCML 136 (591)
T ss_pred CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHH
Confidence 88999999998874 4456788889999999999999999999999999999998 6899999999999999999
Q ss_pred hhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccc--cCChh
Q 010433 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFL--PETPN 229 (511)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~--~esp~ 229 (511)
..+.....+.+|+| ++||++.++...+.++|.++.+.+...... .+|+..|++.+++.++..++ ..++ |+.|+
T Consensus 137 ~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~ 212 (591)
T PTZ00207 137 FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS---DNTSAYFFFLMSFALVVGILAIVFMRLPPFHL 212 (591)
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhheeCCcchh
Confidence 99999999999996 789999999999999999865544322222 26888888888887776544 3333 55555
Q ss_pred HHHhcCCHHHHHHHHHHHhCC--------------------------------------C--------------------
Q 010433 230 SLVEQGKLDEARKVLEKVRGT--------------------------------------A-------------------- 251 (511)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~~--------------------------------------~-------------------- 251 (511)
|..++++.+++++...+.++. +
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~ 292 (591)
T PTZ00207 213 TGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPF 292 (591)
T ss_pred hcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 543332222222221110000 0
Q ss_pred ------------cc---hHHHHHHHH-----HHHHH-----------HhccCChHHhhccCCchhHHHHHHHHHHHhhhc
Q 010433 252 ------------NV---DAEFSDLID-----ASNAA-----------RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300 (511)
Q Consensus 252 ------------~~---~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+. +.+..+..+ ...+. .+...++.+.+++..+|..+ ...++...
T Consensus 293 l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~-----~~~~cg~g 367 (591)
T PTZ00207 293 MAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLL-----WSIFCCVG 367 (591)
T ss_pred HhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHH-----HHHHHhhC
Confidence 00 000000000 00000 00001333344444433333 44555555
Q ss_pred chhhHHhcHHHHHHHc-CCCChh--HHHHHHHHHHHHHHHHHHHHHHHhhcCChh--------HHHhhhHHHHHHHHHHH
Q 010433 301 GMNSILFYAPVIFQSL-GFGSGA--ALYSSVITGIALCIAALISMAFVDKFGRRA--------FFLEAGTEMIIYMVIVA 369 (511)
Q Consensus 301 ~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--------~~~~~~~~~~~~~~~~~ 369 (511)
.......-+.++.+.+ |.+.+. ...+.+..++++.+|++..|.+.....+|+ ........+.++.+++.
T Consensus 368 ~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~ 447 (591)
T PTZ00207 368 AHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLF 447 (591)
T ss_pred chheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 5555666777888887 773333 223678889999999999998873222222 11111111333333333
Q ss_pred HHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 010433 370 ITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALI-AQAFLAAL 448 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~ 448 (511)
... +. ..+.+..++.+++++..++.. ...++|+|. ++-|+-.-+.....-+|..+. ..++|.++
T Consensus 448 ~~~----------p~---~~L~~~~~lvg~~~G~~~~~~-~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Y 512 (591)
T PTZ00207 448 LTL----------PK---AALPLPYFIAAFANGFMAATI-ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWY 512 (591)
T ss_pred HHC----------Cc---cHhHHHHHHHHHHhhHhHHHH-HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 321 10 234455566666666566444 555689999 777776666666566666555 44566666
Q ss_pred Hhcc-------------h-hhHHHHHHHHHHHHHHHHhccccCC
Q 010433 449 CHLK-------------F-GIFLVFGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 449 ~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (511)
|.-. + ..++++++++.+..+.......++|
T Consensus 513 d~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 513 TQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 5321 1 2455555666655555444444444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-23 Score=199.47 Aligned_cols=348 Identities=19% Similarity=0.198 Sum_probs=214.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHh
Q 010433 82 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYL 161 (511)
Q Consensus 82 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 161 (511)
.....|+.++..++.+++.++.|+++|.+|||..++.+.++..+|+++++-++|...++++..+.|+|.|... .....+
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~i 155 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAI 155 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999987666 456668
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHh--ccccCChhHHHhcC-CHH
Q 010433 162 SEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG--LFLPETPNSLVEQG-KLD 238 (511)
Q Consensus 162 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~--~~~~esp~~l~~~~-~~~ 238 (511)
+|..|.|.|....++...........++.++..... +.+|||.|++.++...+.++.. ++.|.+.+.+..++ .+.
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~--~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~ 233 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA--HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKR 233 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc--CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHH
Confidence 999999999888777776666666667777544332 3489999999988877665442 33343322111111 122
Q ss_pred HHHHHHHHHh------------------CC--C--cchHHHHHHHH---------HHHHHHhccCC--hHHhhccCCchh
Q 010433 239 EARKVLEKVR------------------GT--A--NVDAEFSDLID---------ASNAARAIKNP--FRNLFKKKNRPQ 285 (511)
Q Consensus 239 ~~~~~~~~~~------------------~~--~--~~~~~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~ 285 (511)
+..+.++.+. .. . +...-.....- -.+.....+++ ..+++|+++
T Consensus 234 ~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r--- 310 (599)
T PF06609_consen 234 EQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR--- 310 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccch---
Confidence 2233333220 00 0 00000000000 00111111222 234555422
Q ss_pred HHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-hhhHH
Q 010433 286 LVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSG---AALYSSVITGIALCIAALISMAFVDKFGRRAFFL-EAGTE 360 (511)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~ 360 (511)
.+...+ +..+.....++....+.|.... -++.++. ..++...+.+++..++.++.+.+..+++|-|..+ .+..+
T Consensus 311 ~~~~~l-vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~ 389 (599)
T PF06609_consen 311 GFAALL-VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL 389 (599)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 122221 2333333334555555555443 3555443 5677888888899999999999999888766554 44333
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHH
Q 010433 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALI 440 (511)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 440 (511)
+.+.+.++.... +..... + +....+.+.+.+....+. ...++-..|++.-+++.|+..+++.+|+.++
T Consensus 390 ~ta~~Gama~~~--------~~n~~~-~--i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg 457 (599)
T PF06609_consen 390 MTAFCGAMAAVR--------PDNKNA-A--IAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIG 457 (599)
T ss_pred HHHHHHHHHHcc--------CCCcch-H--HHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHH
Confidence 333223222220 111111 1 222333333333232222 3344556788999999999999999999999
Q ss_pred HHHHHHHH
Q 010433 441 AQAFLAAL 448 (511)
Q Consensus 441 ~~~~~~~~ 448 (511)
..++..+.
T Consensus 458 ~aIy~~I~ 465 (599)
T PF06609_consen 458 YAIYNAIF 465 (599)
T ss_pred HHHHHHHH
Confidence 88886554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=200.05 Aligned_cols=370 Identities=10% Similarity=-0.033 Sum_probs=234.9
Q ss_pred HHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHH--HHHHHHHHHHHHHhh-hhhhhh
Q 010433 33 AAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLF--TSSLYFAGLVSTFGA-SYVTRS 109 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~i~~~~~-g~l~dr 109 (511)
+...++..|...+...+. +|.+.++. |.|.+++|++ .+.+.+...+.++++ ++..||
T Consensus 6 ~~~ly~~~g~~~~~~~p~--lp~~l~~~------------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~ 65 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDA--LPTLLRED------------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR 65 (390)
T ss_pred HHHHHHHHHhHHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344557778887777666 67777776 8899999997 467788888888888 557999
Q ss_pred cchhHHHHHHHHHH-HHHHHHHH---HhhH-HHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 110 RGRRASIMVGSVSF-FIGAILNA---CAVH-ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 110 ~Grr~~l~~~~~l~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
+||||..++...+. +......+ ...+ ...++..-++.++..+...+....+..|..++++++...+....+..+|
T Consensus 66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG 145 (390)
T TIGR02718 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG 145 (390)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence 99999875554332 22222222 1222 3344555666677778888888888899998888888888888888999
Q ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 010433 185 ILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDAS 264 (511)
Q Consensus 185 ~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (511)
.++|+...... .+..|||..|++.++..++..+..++++|+++ ++++.++
T Consensus 146 ~~~g~~~~~~l--~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~~~~------------------------- 195 (390)
T TIGR02718 146 FFGGGAGTLVL--FGKFGQRPAFLLVACVPLASLVCVLWLKDRAV---ASPEAPL------------------------- 195 (390)
T ss_pred HHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccccch-------------------------
Confidence 99998774333 33458999999999887776555444443321 0000000
Q ss_pred HHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHH-HHHHHHHHHHH
Q 010433 265 NAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGI-ALCIAALISMA 343 (511)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~ 343 (511)
+...+.++.+|++..+...... +...........+.+.++++.|+++++.+......++ ..+++.++.++
T Consensus 196 ----~~~~~~~~~l~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~ 266 (390)
T TIGR02718 196 ----ARRASLFRFFRRPLAWSLLALA-----LLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAW 266 (390)
T ss_pred ----hhHHHHHHHHcCcCHHHHHHHH-----HHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 0011245566666544433322 2222233344456677888899999999998887764 66677889999
Q ss_pred HHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCc-cch
Q 010433 344 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-EMR 422 (511)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 422 (511)
+.||+++|+.+..+..+..+..+........ . .............+.....+...... .....+..++ +.+
T Consensus 267 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 338 (390)
T TIGR02718 267 LVRRAGLWRTFILGVGLAGSLALLWFAQAAF---W----LAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQA 338 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc---c----cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccch
Confidence 9999999998877655543322222111100 0 00111122222222222223232222 2222344454 789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 010433 423 SAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 469 (511)
Q Consensus 423 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (511)
++.+++.+....++..++|.+.|.+.+..|+...+...+++.+.+.+
T Consensus 339 g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 339 GTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876666555555444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=203.04 Aligned_cols=357 Identities=12% Similarity=0.054 Sum_probs=216.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISM-LLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~ 156 (511)
|++.++.+++.+.+.....+..+++|+++|| +||||+++.+.+++++++++++++++... ++++|+++|+|.|...|.
T Consensus 46 g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~ 125 (489)
T PRK10207 46 GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKAN 125 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCC
Confidence 8899999999999998998999999999999 99999999999999999999999876544 558999999999999999
Q ss_pred hhhHhHhcCCCC--CCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHH--H
Q 010433 157 VPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSL--V 232 (511)
Q Consensus 157 ~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l--~ 232 (511)
..+++.|.+|++ +|++++++++.+.++|.++||.+++.+.. ..|||+.|++.++..++.++.+...++..+.. .
T Consensus 126 ~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~--~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (489)
T PRK10207 126 PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD--KFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSE 203 (489)
T ss_pred HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCC
Confidence 999999999876 45789999999999999999999766654 35899999987554333333333332211100 0
Q ss_pred hcCCHHHHHHHH-------------HHHhCCCcchHHHHHH---HHHH-HHHHhccCChHHhhccCCchhHHHHHHHHHH
Q 010433 233 EQGKLDEARKVL-------------EKVRGTANVDAEFSDL---IDAS-NAARAIKNPFRNLFKKKNRPQLVIGALGIPA 295 (511)
Q Consensus 233 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (511)
.+++..+..... ................ .... -..++.+. .+.+|++......+. +..
T Consensus 204 ~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~--~~~~r~r~~~~~~l~---~~~ 278 (489)
T PRK10207 204 PDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL--DKTGRNKMFVAFVLM---LEA 278 (489)
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH---HHH
Confidence 001101100000 0000000000000000 0000 00000011 123333222111111 112
Q ss_pred HhhhcchhhHHhcHHHHHHH-c-----CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH-------HHhhhHHHH
Q 010433 296 FQQLTGMNSILFYAPVIFQS-L-----GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAF-------FLEAGTEMI 362 (511)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~~~~~~~ 362 (511)
......+....+..+.+.++ . |+.. ....+.....+..++..++.+++.||+++|+. +..+.++..
T Consensus 279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~ 357 (489)
T PRK10207 279 VVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCS 357 (489)
T ss_pred HHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 22223333333445555543 2 2221 22344445556676778888999999998863 556666666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHH
Q 010433 363 IYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ 442 (511)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 442 (511)
++++.+.......... ......+..+....+.+.+.... .+....++.+..|++.++.++|+.+...++|+.++..
T Consensus 358 ~~~~~~~~~~~~~~~~---~~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~ 433 (489)
T PRK10207 358 LGFLTAAAAGMWFADA---QGLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGY 433 (489)
T ss_pred HHHHHHHHHHHhhcCC---CCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655443221111111 11122344445555566665443 3444566678889999999999999999999999888
Q ss_pred HHHHH
Q 010433 443 AFLAA 447 (511)
Q Consensus 443 ~~~~~ 447 (511)
+....
T Consensus 434 l~~~~ 438 (489)
T PRK10207 434 VATFT 438 (489)
T ss_pred HHHHh
Confidence 77544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=200.36 Aligned_cols=382 Identities=10% Similarity=0.047 Sum_probs=233.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|++..+.+++.+.+.+++.++++++|+++|| +|||+++..+.++.+++.++.+++++++.++++|++.|++.|...+..
T Consensus 44 g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 123 (475)
T TIGR00924 44 GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANP 123 (475)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCH
Confidence 8899999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hhHhHhcCCCCC---CchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc----cCChhH
Q 010433 158 PLYLSEMAPAKI---RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL----PETPNS 230 (511)
Q Consensus 158 ~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~----~esp~~ 230 (511)
.++++|++|+++ |++++++++.+.++|.++||++++.+.. ..|||+.|.+.++..++..+.+.+. ++.|+.
T Consensus 124 ~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~--~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (475)
T TIGR00924 124 SSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE--NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV 201 (475)
T ss_pred HHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC
Confidence 999999998754 8889999999999999999999665543 3589999998876555443333222 222210
Q ss_pred HHhcCCHHHHHHHH--H------------HHhCCCcchHHHHHHHH------HHHHH-HhccCChHHhhccCCchhHHHH
Q 010433 231 LVEQGKLDEARKVL--E------------KVRGTANVDAEFSDLID------ASNAA-RAIKNPFRNLFKKKNRPQLVIG 289 (511)
Q Consensus 231 l~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 289 (511)
. ++.+.++.+... . .....+... .+.... ..... ...+....+..+++. .. .+.
T Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~ 276 (475)
T TIGR00924 202 P-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVI--ANILLMTVTLAVIIFFFRLAFKPRLDAVARNKM-YA-YIV 276 (475)
T ss_pred C-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHH-HH-HHH
Confidence 0 000011100000 0 000000000 000000 00000 000000111111111 11 111
Q ss_pred HHHHHHHhhhcchhhHHhcHHHHHHH-cCCCCh----hHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----hhHH--Hhh
Q 010433 290 ALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSG----AALYSSVITGIALCIAALISMAFVDKFGR-----RAFF--LEA 357 (511)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-----~~~~--~~~ 357 (511)
++ +........+.......+.+.++ .+.+.. ..+.+.+..++..++.+++..++..|.+| +... ..+
T Consensus 277 l~-~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 277 LF-LEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HH-HHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 11 22233333334444445555433 333221 26677888888888877775554444433 2333 556
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHH
Q 010433 358 GTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT 437 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 437 (511)
.++..+++..+.+.... .... .....+..+....+...+-. ...|....+..+..|++.||+.+|+......+|.
T Consensus 356 ~~l~~~~~~~~~~~~~~---~~~~-~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 356 MLFCGASFLTFAASIWF---ADAG-GLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHHHHhh---cCCC-CccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666655543211 1111 12334445555555665543 4556667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchh-hHHHHHHHHHHHHHHHHhc
Q 010433 438 ALIAQAFLAALCHLKFG-IFLVFGGLVVIMSAFIYFF 473 (511)
Q Consensus 438 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 473 (511)
.+++.+.....+..++. .+...+.++++++++.++.
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 431 LLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99988888766554433 3344444444444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-21 Score=184.69 Aligned_cols=376 Identities=11% Similarity=0.118 Sum_probs=238.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhh----hcchhHHHHH-HHHHHHHHHHHHHHhhHHH----------------
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGRRASIMV-GSVSFFIGAILNACAVHIS---------------- 137 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~l~~-~~~l~~~~~~~~~~~~~~~---------------- 137 (511)
|++..+.+++..+..+...+.+++.|+++| |+||||.++. +.....++.++.+++++++
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 5999998877 4666667777777776643
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCC--chhHHHHHHHHHHHHHHHHHHHHhhcccC-------------Cc
Q 010433 138 -MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR--GAVNQLFQLTTCLGILVANLINYGTEKIH-------------PW 201 (511)
Q Consensus 138 -~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~~~~~~-------------~~ 201 (511)
.++++-.+..++.....++..++++|.+|+++| +.+.++.+...++|.++|+.+++...... ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 223333445558888888999999999998765 57999999999999999999976542111 02
Q ss_pred cchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhcc
Q 010433 202 GWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK 280 (511)
Q Consensus 202 ~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (511)
+.|..|++.++..++..+. .+..+|.|... .++.++ + +.++.++. +....++++++.
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~~~~~~~~---------------~~~~~~~~i~~~ 252 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---EAAPPSKH---------------GEEAFFGELFGA 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---hccccccc---------------chhhhHHHHHHH
Confidence 6789999988877776554 56688876211 110000 0 00000000 001112333322
Q ss_pred CCc-hhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH--cCCCCh------h----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010433 281 KNR-PQLVIGALGIPAFQQLTGMNSILFYAPVIFQS--LGFGSG------A----ALYSSVITGIALCIAALISMAFVDK 347 (511)
Q Consensus 281 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~------~----~~~~~~~~~~~~~~~~~~~g~l~d~ 347 (511)
-+. ++.+..++ +..++.+.+...+..|.+.+..+ ++-++. + ..+......+...+.+++..++.+|
T Consensus 253 ~~~mP~~m~~l~-~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 253 FKYLPRPVWILL-LVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHCCHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12222222 55666666777777777776643 433221 1 1234445556666777788899999
Q ss_pred cCC-hhHHHhhhHHHHHHHHHHHHHHHhhcCCCC--------CCCcchhHHHHHHHHHHHHHHhcccccccceeecccCC
Q 010433 348 FGR-RAFFLEAGTEMIIYMVIVAITLALEFGEGK--------PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP 418 (511)
Q Consensus 348 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 418 (511)
+|+ |+....+.++.++++....+......+... ..+....+..+......+..++.. ..++++++++..|
T Consensus 332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~ 410 (477)
T TIGR01301 332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIRSS 410 (477)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHcc
Confidence 985 676677777777777776654421100000 000111255555666666666533 3567888888888
Q ss_pred c--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHH-HHHHHHhccccCC
Q 010433 419 L--EMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK--FGIFLVFGGLVVI-MSAFIYFFLPETK 478 (511)
Q Consensus 419 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~ 478 (511)
+ +..|..+|+.|.+..+...+.....|.+.+..+ ....+.++++..+ .++...+.+|+.+
T Consensus 411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5 455999999999999999999988888666555 3344445555444 4445556666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-21 Score=179.65 Aligned_cols=325 Identities=16% Similarity=0.079 Sum_probs=226.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc-hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|+|..|+|.+.++..+...++++++|.++||.+ +|+.+.+..++.++........++++.+++..++..+......|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 889999999999999999999999999999986 5778878788888877777788899999999988898888899999
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHH-H-hhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcC
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN-Y-GTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG 235 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~-~-~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~ 235 (511)
.++..++.. ++++-.|-.....++|.+++.... . .....+..+....+++.+...++.....+.+|+.|.. ++
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~~ 187 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---RS 187 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---cc
Confidence 999888875 344556666666677776664331 1 1111111123345666666555555555667877620 00
Q ss_pred CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH
Q 010433 236 KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS 315 (511)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (511)
.+++ .++....+..+++|++.....++ ..+...........|.+.++++
T Consensus 188 ~~~~--------------------------~~~~~~~~~~~llk~~~~~~Fll-----~~~l~~~~~~~~~~f~~~yl~~ 236 (400)
T PF03825_consen 188 AKES--------------------------VKKLLGLDALKLLKNPRFLVFLL-----AAFLIGISHAAYYTFFSIYLQE 236 (400)
T ss_pred cCCC--------------------------cccccchHHHHHhcCccHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000112345677766443332 2333344455677788888999
Q ss_pred cC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH-
Q 010433 316 LG-FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV- 393 (511)
Q Consensus 316 ~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 393 (511)
.| .+....+...++..+..++.-...+++..|+|.++++..+....++=..+..... +..+.....
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------------~~~~~~~~~~ 304 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------------DPWPFIVALQ 304 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------------CCcHHHHHHH
Confidence 87 7777888888888899999999999999999999999888877777666665541 111111111
Q ss_pred ---HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q 010433 394 ---ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCN-NLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 394 ---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+.+..++..+.. ...++.+..|++.|+++.++.+.. ..+|..++..+.|.+.|+.+
T Consensus 305 ~l~q~lhG~tf~~~~~a-~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAA-SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHhhhhHHHHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 23455555544433 356668999999999999998776 56899999999999999876
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-21 Score=187.74 Aligned_cols=349 Identities=10% Similarity=0.060 Sum_probs=203.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
|++.++.+++.+.+........+++|+++|| +|||+.+..+.++.+++.+++++++ +.+.++++|+++|++.|...+.
T Consensus 53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~ 132 (500)
T PRK09584 53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKAN 132 (500)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCC
Confidence 8899999999888877767777899999999 5999999999999999999998874 5667778999999999999999
Q ss_pred hhhHhHhcCCCCC--CchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH----hccccCChhH
Q 010433 157 VPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG----GLFLPETPNS 230 (511)
Q Consensus 157 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~----~~~~~esp~~ 230 (511)
..+++.|++|+++ |..++++++++.++|.+++|.+++.+.. ..|||+.|++.++..++..+. ...++|.++.
T Consensus 133 ~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~--~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~ 210 (500)
T PRK09584 133 PSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA--KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK 210 (500)
T ss_pred HHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC
Confidence 9999999998644 4568899999999999999999766543 458999999987654443322 2223332110
Q ss_pred HHhcCCHHHHHHHH-----------HHHhCCCcchHHHHHHHHH------HHHHHhccCChHHhhccCCchhHHHHHHHH
Q 010433 231 LVEQGKLDEARKVL-----------EKVRGTANVDAEFSDLIDA------SNAARAIKNPFRNLFKKKNRPQLVIGALGI 293 (511)
Q Consensus 231 l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (511)
..+++.+...... ......+. + ..+..... ...... .....+. .+++.+..+.
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~-- 280 (500)
T PRK09584 211 -PDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-E-IARMALGVVALGIVVIFGKE-AFAMKGA----ARRKMIVAFI-- 280 (500)
T ss_pred -CCccccchhhHHHHHHHHHHHHHHHHHHHhcc-h-HHHHHHHHHHHHHHHHHHHH-HhhcCHH----HHHHHHHHHH--
Confidence 0000011100000 00000000 0 00000000 000000 0000000 1111111111
Q ss_pred HHHhhhcchhhHHhcHHHHHHH---cCCC------ChhHHHHHHHHHHHHHHHHHHHH----HHHhhcCChhHHHhhhHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQS---LGFG------SGAALYSSVITGIALCIAALISM----AFVDKFGRRAFFLEAGTE 360 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~---~g~~------~~~~~~~~~~~~~~~~~~~~~~g----~l~d~~~~~~~~~~~~~~ 360 (511)
.+.....++......|..+.. .+.+ ....+.+.+...+..++..++.. ++.+|.+..+.+..+.++
T Consensus 281 -~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l 359 (500)
T PRK09584 281 -LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVL 359 (500)
T ss_pred -HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHH
Confidence 111111222222233333221 1111 11245566666666666666664 444455555667777788
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHH
Q 010433 361 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALI 440 (511)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 440 (511)
.+++++.+....... . ....-..+..+....+.+.+ .....|....++.+..|++.||..+|+......++..++
T Consensus 360 ~~l~f~~l~~~~~~~--~--~~~~vs~~~~~~~~~l~~~g-e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 360 CSGAFLVLPLGAKFA--N--DAGIVSVNWLIASYGLQSIG-ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA 434 (500)
T ss_pred HHHHHHHHHHHHHhc--C--CCCccCHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 788777765543211 0 01112233344444444444 345556667777899999999999998877777777777
Q ss_pred HHHHH
Q 010433 441 AQAFL 445 (511)
Q Consensus 441 ~~~~~ 445 (511)
..+..
T Consensus 435 g~~~~ 439 (500)
T PRK09584 435 GYVAN 439 (500)
T ss_pred HHHHH
Confidence 66664
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=186.08 Aligned_cols=331 Identities=12% Similarity=0.056 Sum_probs=206.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhhh----hcch-hHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHH
Q 010433 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGR-RASIMVGSVSFFIGAILNACAV------HISMLLLGRIFL 146 (511)
Q Consensus 78 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~l~~~~~~~~~~~~------~~~~l~~~r~l~ 146 (511)
+|++..++|.+..+.-+..++..|+.|.++| |+|| |+.++.+.+..+++..+....+ .+..+++.-++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 3889999999999999999999999999999 6698 6677778888888766654432 234556666777
Q ss_pred HhhhhhhhhhhhhHhHhcC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhh-----cccCCccchHHHHHHHHHHHHHHHH
Q 010433 147 GMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGT-----EKIHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~-----~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
+++.+...++..++..|.. +++||.+..++...+.++|..+.+.+.... ...+..+|+....+.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999 589999999987777777755554442211 1111236787777777776665443
Q ss_pred -hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChH----HhhccCCchhHHHHHHHHHH
Q 010433 221 -GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFR----NLFKKKNRPQLVIGALGIPA 295 (511)
Q Consensus 221 -~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 295 (511)
.+..+|.+.. ++. + .+++++.+++ .+++++..+..+ ...
T Consensus 197 ~~~~~~e~~~~---~~~-~---------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll-----~~~ 240 (473)
T PRK10429 197 TLRNVHEVYSS---DNQ-V---------------------------SAEGSHLTLKDIVALIYKNDQLSCLL-----GMA 240 (473)
T ss_pred HHcCceecCCc---ccc-c---------------------------cccccCCCHHHHHHHHhcCHHHHHHH-----HHH
Confidence 4446664310 000 0 0000112222 333433322222 122
Q ss_pred HhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhh
Q 010433 296 FQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 375 (511)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (511)
+...........+.+++.+....+....+.......+..+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 241 ~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~- 319 (473)
T PRK10429 241 LAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA- 319 (473)
T ss_pred HHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 2222233334444444444433344555666667778889999999999999999999887766555444443222100
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 376 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-------LEMRSAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
+....+..++...+.+.+.+... ...+.+.+|..+ .+..|...|.......++..+++.+.|.+.
T Consensus 320 -------~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 320 -------APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred -------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222333333344444444333 333555567744 334466888889999999999999999988
Q ss_pred Hhcch
Q 010433 449 CHLKF 453 (511)
Q Consensus 449 ~~~~~ 453 (511)
+..|+
T Consensus 392 ~~~Gy 396 (473)
T PRK10429 392 GLIGY 396 (473)
T ss_pred HHcCC
Confidence 76553
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=184.49 Aligned_cols=373 Identities=11% Similarity=-0.006 Sum_probs=228.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----hhHHHHHHHHHHH-HHHHHHHHhhHHH-HHHHHHHHHHhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-----RRASIMVGSVSFF-IGAILNACAVHIS-MLLLGRIFLGMGIG 151 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~l~~~~~l~~-~~~~~~~~~~~~~-~l~~~r~l~G~~~~ 151 (511)
|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++.. ...+.+++.+++.+
T Consensus 57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a 135 (468)
T TIGR00788 57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKA 135 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999666 999999998 7787888777763 4333333335544 44448899999999
Q ss_pred hhhhhhhhHhHhcCCCCCCchhHHHH---HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCCh
Q 010433 152 FGNQAVPLYLSEMAPAKIRGAVNQLF---QLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (511)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 228 (511)
...++..++..|..+ +++....+.. ....++|.++++.+++.+. +..+||..|++.+++.++..+...+++|++
T Consensus 136 ~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~--~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 136 LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL--DKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH--HhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999998 5554433333 3344589999998866554 335899999998888777755567778853
Q ss_pred hHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhc
Q 010433 229 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (511)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
.....+.+.++ .. .. .... ....+..++........++++..+..+...+ +.+. .... .....+
T Consensus 213 ~~~~~~~~~~~-~~--------~~--~~~~--~~~~~~~~~~~~~l~~~l~~~~i~~~l~fif-l~~~-~~~~-~~~~~f 276 (468)
T TIGR00788 213 AFVRPRIGTYL-EM--------NM--ALLT--LGVLANVKVQILGLRGAIQLLEIAKPLIFIF-LSYA-NLPG-ASGSVF 276 (468)
T ss_pred ccccccccccc-hh--------hh--hhhh--hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HHHh-hcCC-CCceeE
Confidence 10000000000 00 00 0000 0000000000112233344444333222222 1011 1111 111111
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhH
Q 010433 309 APVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 388 (511)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
. ...+.+|+++.+.|......+++.+++....+++.+|++.|+.+..+.++..++.+....... .... .......+
T Consensus 277 ~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~~--~~gi~~~~ 352 (468)
T TIGR00788 277 C-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVK-RWNL--AFGISDEV 352 (468)
T ss_pred E-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeee-cccc--ccCCCCee
Confidence 1 111458999999999999999999999999999999999999888777766665544321110 0000 00001122
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhhHHHHHHHH
Q 010433 389 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-----FGIFLVFGGLV 463 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 463 (511)
.......+...+.+..+.+. ..++.+..|++.+++..++.+.+.+++..+++.+.+.+.+..| +...+....++
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGH 431 (468)
T ss_pred eeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence 33334445555555566565 4555799999999999999999999999999988888888776 44444444433
Q ss_pred HHHHH---HHHhcccc
Q 010433 464 VIMSA---FIYFFLPE 476 (511)
Q Consensus 464 ~~~~~---~~~~~~~~ 476 (511)
.+..+ ....++|+
T Consensus 432 ~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 432 SLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 33333 23335564
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=182.93 Aligned_cols=327 Identities=13% Similarity=0.077 Sum_probs=204.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----cch-hHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHH
Q 010433 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGR-RASIMVGSVSFFIGAILNACAVH------ISMLLLGRIFL 146 (511)
Q Consensus 78 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~ 146 (511)
+|++..++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ .+.+++.-++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 39999999999999999999999999999998 777 45666787777777766554442 45666667777
Q ss_pred HhhhhhhhhhhhhHhHhcC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhc-----ccCCccchHHHHHHHHHHHHHHHH
Q 010433 147 GMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGTE-----KIHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~-----~~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
+.+.+....+..++.+|+. +++||.+..++...+..+|..+++.+...+. .....+|+..+.+.++++++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7777777778889999998 4588998888888888888777765432211 112357998888888877766544
Q ss_pred -hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhh
Q 010433 221 -GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (511)
Q Consensus 221 -~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
++..+|.++. ++ + ++.+.++..+++++++.++......+ ...
T Consensus 200 ~~~~~~e~~~~----~~--~--------------------------~~~~~~~~~~~~~~n~~~~~l~~~~~-----~~~ 242 (444)
T PRK09669 200 CFFMTKERYTP----EV--D--------------------------NSSSVWKDLKLLLGNSQWRIMFIFNV-----VLL 242 (444)
T ss_pred HhCCeEEecCC----CC--c--------------------------CCCCHHHHHHHHhCCchHHHHHHHHH-----HHH
Confidence 3444553210 00 0 00001123455566666554433222 111
Q ss_pred cchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCC
Q 010433 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG 379 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (511)
..........+++.+..-.++...+.......+..+++.++.+++.||+|+|+....+..+..+..+.+...
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-------- 314 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-------- 314 (444)
T ss_pred HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 111112222233322211122333444555567778888899999999999998877655444332222211
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 380 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-------LEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
+.+..+...+..++.+.+.+.. .+..+.+.+|..+ .+..|...|..+....++..+++.+.+.+.+..|
T Consensus 315 ---~~~~~~~~~~~~~i~g~~~~~~-~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 315 ---PPSNVWLIFALNILFNFIQNLT-TPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1122333444444555554433 3555666677764 2334677888888999999999999999888665
Q ss_pred h
Q 010433 453 F 453 (511)
Q Consensus 453 ~ 453 (511)
+
T Consensus 391 y 391 (444)
T PRK09669 391 Y 391 (444)
T ss_pred C
Confidence 4
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=164.42 Aligned_cols=397 Identities=14% Similarity=0.105 Sum_probs=255.7
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHH
Q 010433 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVS 99 (511)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~ 99 (511)
.|..+++|.+.++.++-.+..++..--+++. ..+.+.| ++ +....-|+.-+|.+.+...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~-----------------Yg-s~~~~~wlsmIym~v~vp~ 95 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSF-----------------YG-SSSAADWLSMIYMVVSVPF 95 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHH-----------------hc-chHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776665555444333 2333333 25 6777889999999999999
Q ss_pred HHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh------hHHH--HHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCc
Q 010433 100 TFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------VHIS--MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (511)
Q Consensus 100 ~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 171 (511)
.+++-|+.|++|-|...+++..+.+++..+-..+ +.++ ....+..+.+.++-.....-..+..-||+++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 9999999999999999999999999999987766 3345 6667888888888877777778889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccC----CccchH--HHHHHHHHHHHHHHH-hccccC---ChhHHHhcCCHHHHH
Q 010433 172 AVNQLFQLTTCLGILVANLINYGTEKIH----PWGWRL--SLGLATVPATLMFVG-GLFLPE---TPNSLVEQGKLDEAR 241 (511)
Q Consensus 172 ~~~~~~~~~~~~G~~~g~~l~~~~~~~~----~~~wr~--~f~~~~~~~~~~~~~-~~~~~e---sp~~l~~~~~~~~~~ 241 (511)
.+..+-.++..+|.+++.++...+.... ...|.. .|+....++.+.+.+ .+..++ +|....+.
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~------- 248 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA------- 248 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh-------
Confidence 9999999998888888888765554433 345665 355444444433333 222333 33210000
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCCh
Q 010433 242 KVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSG 321 (511)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 321 (511)
...+..-..+.++.++++.+.... +.+......++...+.+...+...|++..
T Consensus 249 ----------------------~~~~~~f~~si~~~~~n~~F~il~-----~~ygi~~g~F~~l~~~l~~~l~~sgY~~~ 301 (480)
T KOG2563|consen 249 ----------------------ALQDASFPKSIKSCFKNRQFIILA-----ICYGIGLGLFNSLSTLLNLALCPSGYEGV 301 (480)
T ss_pred ----------------------hhhcCcHHHHHHHHHcCccHHHHH-----HHHhhhHHHHHHHHHHhhhccccccCCcc
Confidence 000011133455666666532222 33444444444444444433444677778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHH
Q 010433 322 AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAY 401 (511)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (511)
.+|.......+++++++.+.|.+.||.++-+....-.........+....... .....+.+.....+++ .+
T Consensus 302 ~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~--------~~~~~viv~~t~~~~g-~~ 372 (480)
T KOG2563|consen 302 FAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL--------FLGDSVIVFTTCGLLG-FF 372 (480)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc--------cCCceEehhhhHHHHH-Hh
Confidence 89999999999999999999999999876654443222222222111111111 1122233333333333 34
Q ss_pred hcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHHHHHhccccC
Q 010433 402 GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK----FGIFLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 402 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
+.+..|+...+..|..=|..-++..|+.+..+++.+.+-..+.+...+..+ +....+......+....+..+.++.
T Consensus 373 ~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 373 GTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred hcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 556677888888887666667788899999999999999999988887666 4444555555555555555555554
Q ss_pred CCC
Q 010433 478 KQV 480 (511)
Q Consensus 478 ~~~ 480 (511)
.++
T Consensus 453 y~R 455 (480)
T KOG2563|consen 453 YRR 455 (480)
T ss_pred HHh
Confidence 443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-18 Score=165.54 Aligned_cols=364 Identities=17% Similarity=0.105 Sum_probs=239.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 82 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV-GSVSFFIGAILNACA-V-HISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 82 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~-~~~l~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
.+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.+..+. + +++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999987766554 555555566666664 3 344444555555678888888999
Q ss_pred hHhHhcCCCCCC--------------------------chhHHHHHHHHHHHHHHHHHHHHhhcccC------CccchHH
Q 010433 159 LYLSEMAPAKIR--------------------------GAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLS 206 (511)
Q Consensus 159 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~l~~~~~~~~------~~~wr~~ 206 (511)
+++.|..+++++ ++..+.-.....+|.++.-++........ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999998888 89999888888888888777644432222 1345888
Q ss_pred HHHHHHHHHHHH-HHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchh
Q 010433 207 LGLATVPATLMF-VGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ 285 (511)
Q Consensus 207 f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (511)
+.+.++.-++.. ..++++||.|+....++...-. ...-++..+.+++..+.+.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~-----------------------~~g~~~l~~t~k~~~~~~~--- 282 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYL-----------------------RFGFKRLWRTFKEIRKLRQ--- 282 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHH-----------------------HHHHHHHHHHHHHHHhChH---
Confidence 888887766654 4466788876410000000000 0001111222333333222
Q ss_pred HHHHHHHHHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHhhhHHHH
Q 010433 286 LVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR--AFFLEAGTEMI 362 (511)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~ 362 (511)
....+ +..+...-+...+..+...|.+ .+|++..+.........+.+++|.++.+++.||+|.| +.+........
T Consensus 283 -~~~fL-ia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 283 -LFLFL-IAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred -HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 22222 4555555666777777777775 6999999999999999999999999999999999998 66665544432
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHH
Q 010433 363 IYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ 442 (511)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 442 (511)
+..+...+.. ... .......+...+...+.+...+.. .+...++.+|+.|+++.+..+|+....+...+.++|.
T Consensus 361 ~i~~~g~~G~-~~~----~~g~~~~~~f~~~a~~~G~~~G~~-qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 361 IIPLYGLFGF-WPS----FFGLKSPWEFWVLAVLIGLFMGGI-QSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHHHHHHHh-hhc----ccCcccHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 2222211100 000 001123344445555555555533 3455666789999999999999999999999999999
Q ss_pred HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhccccCCC
Q 010433 443 AFLAALCHLK-FGIFLVFGGLVVIMSAFIYFFLPETKQ 479 (511)
Q Consensus 443 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (511)
+++.+.+..+ ....+....+.+++++++...++.+|+
T Consensus 435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 435 LFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence 9999999887 455555555566666666666655444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=171.25 Aligned_cols=324 Identities=11% Similarity=0.049 Sum_probs=194.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc----chhHHH-HHHHHHHHHHHHHHH-H----hh--HHHHHHHHHHHH
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR----GRRASI-MVGSVSFFIGAILNA-C----AV--HISMLLLGRIFL 146 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~l-~~~~~l~~~~~~~~~-~----~~--~~~~l~~~r~l~ 146 (511)
|++..++|.+.++..+..++..++.|+++||. ||||.. ..+.+...+..++.. . ++ ..+.+++.-++.
T Consensus 40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (448)
T PRK09848 40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL 119 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence 88999999999999999999999999999996 777644 556555554444432 1 11 223344556778
Q ss_pred HhhhhhhhhhhhhHhHhcCCC-CCCchhHHHHHHH-----HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-
Q 010433 147 GMGIGFGNQAVPLYLSEMAPA-KIRGAVNQLFQLT-----TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV- 219 (511)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~- 219 (511)
+++.+...++..++..+..++ ++|.+..+.-..+ ..+|..++|.++.........+|.....+.++++++..+
T Consensus 120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ 199 (448)
T PRK09848 120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFI 199 (448)
T ss_pred HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877754 6788876665543 335566667664432111011222222233333333322
Q ss_pred HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhh
Q 010433 220 GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (511)
Q Consensus 220 ~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
.....||+++. +.+ +...+..++.+++++....... ..+...
T Consensus 200 ~~~~~~e~~~~---~~~------------------------------~~~~~~~~~~l~~n~~f~~~~~-----~~~~~~ 241 (448)
T PRK09848 200 CFKSTRENVVR---IVA------------------------------QPSLKISLQTLKRNRPLFMLCI-----GALCVL 241 (448)
T ss_pred HHcCcEeccCC---Ccc------------------------------CCCHHHHHHHHhCCchHHHHHH-----HHHHHH
Confidence 23345664310 000 0000122455666665443332 222223
Q ss_pred cchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCC
Q 010433 300 TGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 378 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
..........|+++++ +|.++...++......++.+++.++.+++.||+++|+.+..+..+..++.+.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------- 314 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------- 314 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 3334444556666654 67666555555555566778889999999999999999988877766665554432
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCcc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 379 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE-------MRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
+....+.......+.+.+.+... +....+.+|..|.+ .+|...|+.+....++..+++.+.+.+.+..
T Consensus 315 ----~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 315 ----SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11122333333444444444333 33344555666543 4588999999999999999999999887655
Q ss_pred c
Q 010433 452 K 452 (511)
Q Consensus 452 ~ 452 (511)
|
T Consensus 390 G 390 (448)
T PRK09848 390 G 390 (448)
T ss_pred C
Confidence 4
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-18 Score=163.23 Aligned_cols=356 Identities=14% Similarity=0.079 Sum_probs=201.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
|++..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.+..+ +...+.++..+.+++.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 88999999999999999999999999999999 999999999999999987776543 2233444445555667777787
Q ss_pred hhhHhHhcCCCC--CCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc----cCChhH
Q 010433 157 VPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL----PETPNS 230 (511)
Q Consensus 157 ~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~----~esp~~ 230 (511)
..++++|.+|++ +|..++++.+.+.++|..++|.+.+.+.. ..|||+.|.+.++..++.++.+.+. ++....
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~--~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~ 198 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE--EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGV 198 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh--hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Confidence 889999999875 69999999999999999999999665543 4589999998776544443332221 111000
Q ss_pred HHhcCCHHHHHH-HH-HH----------HhCCCcchHHHHHHHHHHH-H-----HHhccCChHHhhccCCchhHHHH-HH
Q 010433 231 LVEQGKLDEARK-VL-EK----------VRGTANVDAEFSDLIDASN-A-----ARAIKNPFRNLFKKKNRPQLVIG-AL 291 (511)
Q Consensus 231 l~~~~~~~~~~~-~~-~~----------~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~-~~ 291 (511)
.++..+++... .. .. .....-.+........... . -.-.+ ++ .++..+++.... .+
T Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~er~r~~~~~~l 273 (493)
T PRK15462 199 -NKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR---KA-ENQKQRKELGLIVTL 273 (493)
T ss_pred -CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-CCHHHHhhHHHHHHH
Confidence 00000000000 00 00 0000000000000000000 0 00000 00 001111121111 11
Q ss_pred HHHHHhhhcchhhHHhcHHHHHHH------cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hh-----HHHhhh
Q 010433 292 GIPAFQQLTGMNSILFYAPVIFQS------LGFGSGAALYSSVITGIALCIAALISMAFVDKFGR--RA-----FFLEAG 358 (511)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~-----~~~~~~ 358 (511)
.+.....+..+.-...-+..+.++ +|+. ....+..+...+..++.+++..++-.|..| |. -...+.
T Consensus 274 ~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~ 352 (493)
T PRK15462 274 TFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGL 352 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 011111222222222222333322 2332 235566777778777777777776555522 21 255666
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHH-HHHH
Q 010433 359 TEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNN-LLFT 437 (511)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~ 437 (511)
++++++++.+....... .. ......++++....+...+ ....+|+..+.++++.|++.+|..+|+..... .++.
T Consensus 353 ~~~g~~f~~l~~~~~~~-~~---~~~~s~~wl~~~~~~~t~g-El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~ 427 (493)
T PRK15462 353 GLMSAGFCILTLSARWS-AM---YGHSSLPLMVLGLAVMGFA-ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN 427 (493)
T ss_pred HHHHHHHHHHHHHHhhc-CC---CCCcCHHHHHHHHHHHHHH-HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 66777766665543221 11 1112333344444444444 67788998898899999999999999986643 5666
Q ss_pred HHHHHHHHHH
Q 010433 438 ALIAQAFLAA 447 (511)
Q Consensus 438 ~~~~~~~~~~ 447 (511)
.++..+.+..
T Consensus 428 ~~~g~~~~~~ 437 (493)
T PRK15462 428 YLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHh
Confidence 6666655544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-19 Score=170.81 Aligned_cols=326 Identities=14% Similarity=0.190 Sum_probs=234.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhh----hcchhH-HHHHHHHHHHHHHHHHHHh-h-------HHHHHHHHHHH
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGRRA-SIMVGSVSFFIGAILNACA-V-------HISMLLLGRIF 145 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~-~l~~~~~l~~~~~~~~~~~-~-------~~~~l~~~r~l 145 (511)
++++..+|.+..+..+..++..|+.|.++| |+|||| .++.+..+.+++.+++... + ....+.+.-++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 889999999999999999999999999999 899765 4567888888888777665 4 23445677777
Q ss_pred HHhhhhhhhhhhhhHhHhcCC-CCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC----C-ccchHHHHHHHHHHHHHHH
Q 010433 146 LGMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEKIH----P-WGWRLSLGLATVPATLMFV 219 (511)
Q Consensus 146 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~----~-~~wr~~f~~~~~~~~~~~~ 219 (511)
..++.........++..|..+ +++|.+..+.-..+..+|.++...+........ . .+|++..++.+++.++..+
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~ 192 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFL 192 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999997 578999999999988888876555533332111 1 2799999998888887755
Q ss_pred H-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhh
Q 010433 220 G-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298 (511)
Q Consensus 220 ~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
. .+..+|.++ +. ++++++.+.++.++++++++..+.... ..+..
T Consensus 193 i~~~~~ke~~~------~~------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~-----~~~~~ 237 (428)
T PF13347_consen 193 ITFFFVKERSV------EV------------------------TEQEKKISLRDSLRSLFRNRPFRILLL-----AFFLQ 237 (428)
T ss_pred hhhheeeeccc------cc------------------------cccccccccccchhhhcccchHHHHHH-----HHHHH
Confidence 5 455677211 00 001111222445666777766554432 23333
Q ss_pred hcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcC
Q 010433 299 LTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 377 (511)
Q Consensus 299 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (511)
.........+.+++.+. .|.+ ...+.......+..+++.++.++++||+|+|+....+..+.+++.+.+.+..
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----- 311 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG----- 311 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-----
Confidence 33444455556666655 4544 5566777788889999999999999999999999998888888777766652
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 378 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-------EMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
....+...+...+.+.+.+..+ ...+.+.+|..+. +..|...|+.+....++..+++.+.+.+.+.
T Consensus 312 ------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 312 ------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred ------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1334556666666666666444 5556777787763 3458889999999999999999999988776
Q ss_pred cc
Q 010433 451 LK 452 (511)
Q Consensus 451 ~~ 452 (511)
.|
T Consensus 385 ~G 386 (428)
T PF13347_consen 385 VG 386 (428)
T ss_pred hC
Confidence 54
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-18 Score=165.83 Aligned_cols=324 Identities=10% Similarity=0.033 Sum_probs=194.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----cchhH-HHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHH
Q 010433 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRA-SIMVGSVSFFIGAILNACAVH------ISMLLLGRIFL 146 (511)
Q Consensus 78 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~ 146 (511)
+|+++..+|.+..+.-+--++..|+.|.++|| +|||| .++++.+..+++.+++-..++ ...+.+.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 38999999999999999999999999999996 78864 556677778877766654442 34556666777
Q ss_pred HhhhhhhhhhhhhHhHhcCC-CCCCchhHHHHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHH
Q 010433 147 GMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
.++......+-.++..|..+ ++||++..++...+..+|..+++.+...... .+..+|+....+.+++.++..+.
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88889888899999999987 7899999999999999988777666322211 11246888777777776665444
Q ss_pred -hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhh
Q 010433 221 -GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (511)
Q Consensus 221 -~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
....+|.++. +.+ +...++.++..++++.++...... +...
T Consensus 200 ~~~~~kE~~~~-----~~~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~-----~~~~ 241 (460)
T PRK11462 200 CFFTTKERVEA-----PPT----------------------------TTSMREDLRDIWQNDQWRIVGLLT-----IFNI 241 (460)
T ss_pred HHhcceeccCC-----Ccc----------------------------CCCHHHHHHHHhCChHHHHHHHHH-----HHHH
Confidence 3334553210 000 000011234445554443332111 1111
Q ss_pred cchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCC
Q 010433 300 TGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 378 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
...........++.+. .|. +...+.+.....+..+++.++++++.||+++|+....+.....+..+++.+.
T Consensus 242 ~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~------- 313 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV------- 313 (460)
T ss_pred HHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-------
Confidence 1111122222222222 232 2334456667778888999999999999999987664444333322222111
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 379 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-------LEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
+....+...+..++.+.+.+ ...++.+.+.+|..+ .+..|...+.......++..+++.+.+.+.+..
T Consensus 314 ----~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 314 ----PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred ----chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 01111222222233333322 223344445555544 223355556667888899999999998887654
Q ss_pred c
Q 010433 452 K 452 (511)
Q Consensus 452 ~ 452 (511)
|
T Consensus 389 G 389 (460)
T PRK11462 389 G 389 (460)
T ss_pred C
Confidence 4
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=158.16 Aligned_cols=331 Identities=16% Similarity=0.081 Sum_probs=206.0
Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhhh
Q 010433 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMGI 150 (511)
Q Consensus 75 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 150 (511)
+.+.+++.++..++.++|.....+.+.++|++.|| +|.|..-++-.+...++.++++ ..+.+|.++++|++.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 44448888999999999999999999999999996 6877665555555556666554 4689999999999999999
Q ss_pred hhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC-----CccchHHHHH----HHHHHHHHHHHh
Q 010433 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-----PWGWRLSLGL----ATVPATLMFVGG 221 (511)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~-----~~~wr~~f~~----~~~~~~~~~~~~ 221 (511)
-..-++-..+..-||..||.+.++|+.....-+|..+--.+-..+.... ..|- ...-+ ....+...++..
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~gh-T~LG~~l~~~~~tc~~slica 229 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGH-TLLGLWLCFEVKTCKQSLICA 229 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999888888765433322211100 0000 00000 000000000000
Q ss_pred ccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcc
Q 010433 222 LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTG 301 (511)
Q Consensus 222 ~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
.- - .-.++.+++.+.+.++...+ .....+. ..+.+.+.... ...+.....
T Consensus 230 l~----l-----g~~D~rAerilh~e~g~~Ge-----------------~pkLtdv---~~f~ppfw~~~-iicv~yyva 279 (459)
T KOG4686|consen 230 LS----L-----GLSDDRAERILHLEEGFLGE-----------------EPKLTDV---NTFYPPFWVLV-IICVLYYVA 279 (459)
T ss_pred HH----h-----hhhhhHHHHHHhhhcCcccC-----------------Ccccccc---cccCccHHHHH-HHHHHHHHH
Confidence 00 0 00111122211111111100 0111111 11111122222 333444445
Q ss_pred hhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHH-HHHHHHHHHHHhhcCCC
Q 010433 302 MNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMI-IYMVIVAITLALEFGEG 379 (511)
Q Consensus 302 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 379 (511)
...+....|.+++ ++|+|+..++.+.+.......+..++.|.++||.|++..++.+..+.. .+-..+.+..
T Consensus 280 ~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~------- 352 (459)
T KOG4686|consen 280 WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF------- 352 (459)
T ss_pred HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-------
Confidence 5566677787775 599999999999988888899999999999999999976665443332 2222222221
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 380 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..++ ..+++.+..+.+.. ...|..++.+.|+++.|++.|.++.+.++|-.+.|.+.|.+.|+.+
T Consensus 353 -----lsPy---~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 353 -----LSPY---TSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred -----ccHH---HHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 1122 23333333332211 2224455678899999999999999999999999999999988776
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-19 Score=162.71 Aligned_cols=349 Identities=15% Similarity=0.148 Sum_probs=216.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH--H-HHHHHHHHhh----HH-HHHHHHHHHHHhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF--F-IGAILNACAV----HI-SMLLLGRIFLGMGI 150 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~--~-~~~~~~~~~~----~~-~~l~~~r~l~G~~~ 150 (511)
|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+... . ...+...+.| |. ...+++-...|++.
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999777655433222 1 2222222322 22 22333334445555
Q ss_pred hhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhcc-ccCChh
Q 010433 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPETPN 229 (511)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~ 229 (511)
....|+.-+++.++. ++.+.-.|-..+..++|.+++..+++.+... +-+..|++....+++..++.++ -|+.++
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 555666666666654 3445667777888888888888887766653 3567788776665555444333 333331
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCC---hHHhhccCCchhHHHHHHHHHHHhhhcchhhHH
Q 010433 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNP---FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 306 (511)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
.....+..+ .++++.+ ..+++|.++.|...+.. ......+..+.
T Consensus 194 ~~~~~~~~~----------------------------~~~~~~~~~~~~~l~k~~~fw~~~l~v-----~g~~~~Y~vfd 240 (412)
T PF01306_consen 194 QAEVADALG----------------------------AKKDKVSLKDVLSLFKMRNFWFFVLFV-----IGVAAIYDVFD 240 (412)
T ss_dssp SS-SSTTSS----------------------------S------HHHHHHHTTSHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred hhhhhcccc----------------------------cCCCCCcHHHHHHHhcchhHHHHHHHH-----HHHHHHHHHHH
Confidence 100000000 0001112 23455555554433322 22223344555
Q ss_pred hcHHHHHHHc----CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 307 FYAPVIFQSL----GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 307 ~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
...+.|+..+ +.+....|.+.+...+..++...+..++.+|+|.|+.++++..++.+=..+.++.
T Consensus 241 qqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~----------- 309 (412)
T PF01306_consen 241 QQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA----------- 309 (412)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-----------
Confidence 4556666543 3344567888899999999999999999999999999999888888777776665
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHhcchh-hHHHHH
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV-VCNNLLFTALIAQAFLAALCHLKFG-IFLVFG 460 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 460 (511)
..++.....-.+.+.-+.....+. .-++++.+|++..++...+. +...+++..+.+.+.|.+.|+.|+. ++++.+
T Consensus 310 --~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg 386 (412)
T PF01306_consen 310 --TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMG 386 (412)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHH
Confidence 234555555555555555444333 45668999999988988885 5778899999999999999999965 666777
Q ss_pred HHHHHHHHHHHhccccCCC
Q 010433 461 GLVVIMSAFIYFFLPETKQ 479 (511)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (511)
.+.+...++..+.++++++
T Consensus 387 ~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 387 LIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHheeeecCCCc
Confidence 7666666666666665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=155.84 Aligned_cols=330 Identities=15% Similarity=0.136 Sum_probs=230.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----cchh-HHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHH
Q 010433 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRR-ASIMVGSVSFFIGAILNACAVH------ISMLLLGRIFL 146 (511)
Q Consensus 78 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~ 146 (511)
+|+++..+|.+..+.-+--++..|+.|.+.|| +||+ +.++++.+..++...++-.+++ ....++.-.+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 38999999999999999999999999999995 7874 5677788999998888877763 44556677888
Q ss_pred HhhhhhhhhhhhhHhHhcCC-CCCCchhHHHHHHHHHHHHHHHHHH-----HHhhcccCCccchHHHHHHHHHHHHHHHH
Q 010433 147 GMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLI-----NYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l-----~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
+++......+-.++.+|+.+ ++||.+..++-..+.++|..+...+ ..........||+..-.+.++++++..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 6899999999999999886555433 22222222468998888888888777655
Q ss_pred h-ccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhh
Q 010433 221 G-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (511)
Q Consensus 221 ~-~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
. +-.+|.+.. +.+.++ ..+.+.+..+..+++++.+..... ..++..
T Consensus 203 ~~~~v~ER~~~---~~~~~~-------------------------~~~~~~~~~~~~~~~Nrp~~~~l~-----~~l~~~ 249 (467)
T COG2211 203 CFFNVKERVVE---TQPTKT-------------------------GVKLKLKDSFLLIFKNRPLLLLLL-----MNLLLF 249 (467)
T ss_pred HHHHhhcccCc---cccCcc-------------------------cccccHHHHHHHHHccchHHHHHH-----HHHHHH
Confidence 4 346665420 000000 000111122234555554433332 233333
Q ss_pred cchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCC
Q 010433 300 TGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 378 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
.+.+.......+|.+. +|.+.............+.+++.++..++.+|+|+|+.+.++.++.+++.+++.+..
T Consensus 250 ~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~------ 323 (467)
T COG2211 250 IAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP------ 323 (467)
T ss_pred HHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc------
Confidence 3344444444544433 677777777778888888888899999999999999999999888888777776652
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 379 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-------EMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
.+..++.++..++...+.+ ...++++.+++|..+- +..|...|....+.-++.+++..+.|+..+..
T Consensus 324 -----~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 324 -----AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred -----CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2333444455455555554 4456778888877543 33477888888889999999999999988766
Q ss_pred c
Q 010433 452 K 452 (511)
Q Consensus 452 ~ 452 (511)
|
T Consensus 398 G 398 (467)
T COG2211 398 G 398 (467)
T ss_pred C
Confidence 5
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=157.33 Aligned_cols=276 Identities=14% Similarity=0.105 Sum_probs=186.9
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC-----------
Q 010433 131 ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH----------- 199 (511)
Q Consensus 131 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~----------- 199 (511)
+...+|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|.+++|.++.......
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999977555221
Q ss_pred ---CccchHHHHHHHHHHHHHHHHhcc--ccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCCh
Q 010433 200 ---PWGWRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF 274 (511)
Q Consensus 200 ---~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (511)
..+||++|++.+.+.++..+.+.+ +||.++ ++.++. . .++ ....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~----------------------~--~~~--~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV----------------------S--SGD--TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc----------------------c--ccc--ccch
Confidence 137999999776665555444333 455321 000000 0 000 0001
Q ss_pred HHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH---cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 010433 275 RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS---LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 351 (511)
++.++++. ..... +..+...........|.+.|+++ +|+++.+++........+.++++++.+++.||+++|
T Consensus 134 ~~~~~~~~----~~l~~-~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 134 TSAFQFTH----LVLGA-LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hhHHhhHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 12222221 12222 44555555666778889999864 589999999999999999999999999999999999
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHH
Q 010433 352 AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVC 431 (511)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 431 (511)
+.+..+..+..++.++.... +. ........+.+++.+..++.. .....+..|++ .+++.++. .
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~------------~~--~~~~~~~~l~g~~~s~i~P~~-~s~a~~~~~~~-~~~asai~-~ 271 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALT------------HG--YVAMWFVLALGLFNSIMFPTI-FSLALNALGRH-TSQGSGIL-C 271 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc------------CC--HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhh-hhhhHHHH-H
Confidence 88877666555544332221 01 111223334555555555443 44445666643 55666765 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHH
Q 010433 432 NNLLFTALIAQAFLAALCHLKFGIFLVF 459 (511)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (511)
.+.+|+.+.|++.|.+.|..+....+.+
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 7789999999999999998875554443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=144.66 Aligned_cols=354 Identities=14% Similarity=0.055 Sum_probs=237.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHH-HHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhhhhhhhhh
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI-MVGSVSFFIGAILNACAVH---ISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l-~~~~~l~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~ 156 (511)
+.+..+...++..+..++.+|+-|.++|+.|+||-. -....+..++..+..++++ ++..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 556788889999999999999999999999976654 4455555666666666654 445555678888999999999
Q ss_pred hhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc-c---------------cCCccchHHHHHHHHHHHHHHHH
Q 010433 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE-K---------------IHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~-~---------------~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
..+++.+..++++-++..++-.....+|.++.-+...... . .+...=|..+.+.++..++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 9999999999988888877766666666655544321110 0 12345688888888777766443
Q ss_pred -hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhh
Q 010433 221 -GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (511)
Q Consensus 221 -~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
++..++.++- +.+... . -...-++.+.++++..++++....+ +..+...
T Consensus 216 m~~~v~~~~~~---~~~~~~-------------------~---l~~g~k~L~~t~k~i~~~~~i~~FL-----iA~~~~~ 265 (438)
T COG2270 216 MILNVHDAEKI---SSPPPT-------------------A---LRNGFKELKSTFKEIRGRKNLVLFL-----IARFFYI 265 (438)
T ss_pred HHhcccccccc---cccchH-------------------H---HHHHHHHHHHHHHHHhcccchHHHH-----HHHHHHH
Confidence 5556665420 000000 0 0011122234455565555433333 3444455
Q ss_pred cchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCC
Q 010433 300 TGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 378 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
-+.+....+...+-. ++|++..+.........+..++++++.|++.||+|.|+++..+.++..+..+......
T Consensus 266 DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~------ 339 (438)
T COG2270 266 DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE------ 339 (438)
T ss_pred hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc------
Confidence 556667777777775 7999999999999999999999999999999999999888877666555444433321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhHH
Q 010433 379 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF-GIFL 457 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 457 (511)
......+...+.+...+.. .+....+..+..|+++.+..+|+++..+...+.++|...+.+.+..+. ..-+
T Consensus 340 -------~~~~f~i~gll~g~s~G~~-qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 340 -------GELDFWILGLLVGTSLGGA-QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred -------ccHHHHHHHHHHHHhcchH-HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 1122233333334443322 344466778999999999999999999999999999999999887763 3344
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q 010433 458 VFGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~ 478 (511)
....+.+..+++....+|..+
T Consensus 412 ~~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred HHHHHHHHhhHhhEEeecCCC
Confidence 444445555555555555543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=155.28 Aligned_cols=402 Identities=15% Similarity=0.117 Sum_probs=233.0
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHH
Q 010433 18 YEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGL 97 (511)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~ 97 (511)
++++.+||...++ .+..++.+...+++.+. ..++.++.. .+-+.+..|++.++..++.+
T Consensus 27 ~~~~t~wrsi~l~---~~~sfl~~v~~sI~~~s--~wpYl~~lD----------------~~A~~~ffG~viaa~slg~~ 85 (488)
T KOG2325|consen 27 DERKTNWRSIYLA---LLNSFLVAVQFSIYLTS--MWPYLQKLD----------------PTATATFFGLVIAASSLGHA 85 (488)
T ss_pred cccCCchHhHHHH---HHHHHHHhhhheEEEee--cchhhhhcC----------------CCCCcchhhHHHHHHHHHHH
Confidence 3444555544444 45567777777777555 445555431 15578889999999999999
Q ss_pred HHHHhhhhhhhhcch-hHHHHHHHHHHHHHHHHH-HHh---h-HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCc
Q 010433 98 VSTFGASYVTRSRGR-RASIMVGSVSFFIGAILN-ACA---V-HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (511)
Q Consensus 98 i~~~~~g~l~dr~Gr-r~~l~~~~~l~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 171 (511)
++++..|++..|.+. |+.++.|.++..+++++. ++. + .-+.++++|++.|+|.| .....-+|+++....++|.
T Consensus 86 i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~ 164 (488)
T KOG2325|consen 86 IFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRP 164 (488)
T ss_pred hcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchH
Confidence 999999999999986 777899999999999988 443 3 57889999999999977 5567889999988899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCCcc-----------chHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHH
Q 010433 172 AVNQLFQLTTCLGILVANLINYGTEKIHPWG-----------WRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDE 239 (511)
Q Consensus 172 ~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~-----------wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~ 239 (511)
++++....+..+|.++||.+......+...| +..+-|+.+++.++.++. .++++|.++--..++.+++
T Consensus 165 rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~ 244 (488)
T KOG2325|consen 165 RAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV 244 (488)
T ss_pred HHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc
Confidence 9999999999999999998865544333222 235567777777776554 4557776531100000000
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHh-cHHHHHHHcCC
Q 010433 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF-YAPVIFQSLGF 318 (511)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~ 318 (511)
++ . +....+..+.+.-+...+.+. +..+.....+..... ..+.....+++
T Consensus 245 ------------------~~---~-------~~~~~~~~~~~~d~~~~~vc~-~~~~~~~~~~~~iet~~~~~~m~~y~w 295 (488)
T KOG2325|consen 245 ------------------EE---E-------KSDIEKVKKPKLDWVAVLVCI-FLRFVVNFIATTIETLSSALTMVMYGW 295 (488)
T ss_pred ------------------hh---h-------ccchhhhccCChhHHHHHHHH-HHHHHHHHHHHHHHhccchHHHHHhcc
Confidence 00 0 000011111112222222232 334444333333233 33334455676
Q ss_pred CChhH----HHHHHHHHHHHHHHHHHHHHHH-hhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCC--------CCCCcc
Q 010433 319 GSGAA----LYSSVITGIALCIAALISMAFV-DKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG--------KPLPKG 385 (511)
Q Consensus 319 ~~~~~----~~~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 385 (511)
+..++ +...+..++......+...... .++.+|+.+..+.........+......+...+. ......
T Consensus 296 ~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~ 375 (488)
T KOG2325|consen 296 TGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEE 375 (488)
T ss_pred ccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCccc
Confidence 65544 3334444444444333333333 3334455444443333332222222211111000 000001
Q ss_pred h---------hHHHHHH--HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 010433 386 I---------GIFLVIV--ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG 454 (511)
Q Consensus 386 ~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (511)
. +...... ..+++.++-....++... -+|+..++.+++..++.......+..++|.+........|..
T Consensus 376 y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tl-ySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~ 454 (488)
T KOG2325|consen 376 YSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTL-YSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPR 454 (488)
T ss_pred chhhccCcccChhhheeehhheeccccccccchHHHH-HHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCcc
Confidence 1 1111111 112222221111223333 478899999999999999999999999999998888888877
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010433 455 IFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (511)
..+.+..+..++....+
T Consensus 455 ~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 455 PVWIILLCLLLVVAALW 471 (488)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76666666555554443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=153.74 Aligned_cols=305 Identities=15% Similarity=0.169 Sum_probs=210.1
Q ss_pred HHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 010433 31 MVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR 110 (511)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~ 110 (511)
.+.++..+..++..+.+... +..+.+.| +++.++.|++.+.+=++..+...+..+..-|.
T Consensus 100 ~~l~~~~~~q~l~~~y~~s~--IttiErRF------------------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~ 159 (735)
T KOG3626|consen 100 VLLSLAAFAQGLYVGYFNSV--ITTIERRF------------------KISSSQSGLIASSYDIGNLLLIIFVSYFGSRG 159 (735)
T ss_pred HHHHHHHHHHHhhhhhhhhh--hhhhhhhc------------------CCCCCcceeEeeecccchhhhhHhHHHhcccc
Confidence 33445556666666665544 56777777 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh--------------------h---------------------------H----H-HH
Q 010433 111 GRRASIMVGSVSFFIGAILNACA--------------------V---------------------------H----I-SM 138 (511)
Q Consensus 111 Grr~~l~~~~~l~~~~~~~~~~~--------------------~---------------------------~----~-~~ 138 (511)
-|-+.+-.|.++.+++++++++- + . + ..
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 99999999999999999998772 0 0 2 25
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCC-----------------c
Q 010433 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-----------------W 201 (511)
Q Consensus 139 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~-----------------~ 201 (511)
++++.++.|+|....++.+.+|+-|...+++-+..+|+......+|.++|-+++++...... -
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 67789999999999999999999999999999999999999999999999999766532110 1
Q ss_pred cchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccC
Q 010433 202 GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKK 281 (511)
Q Consensus 202 ~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (511)
.|..-|++.+.+.++..+.++++|.+.+. ..+..+ .+..+....+++ ..++.....+.-++.....+.+++++
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp~---~~~~~~-~~~~~~~k~~~~---~~~~~~~~~~~ikdfp~s~~~ll~N~ 392 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKELPK---SQKRKR-ARDLHVLKTESG---GAKSDKTFGKKIKDFPKSIKRLLSNP 392 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCcc---ccccch-hhhhcccccccc---cccCCcchhhhHHHHHHHHHHHhcCc
Confidence 37778888888888887777778765421 111000 000000000000 00000000011122233455566655
Q ss_pred CchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhcC--ChhHHHhh
Q 010433 282 NRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI-ALCIAALISMAFVDKFG--RRAFFLEA 357 (511)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~ 357 (511)
.+ +... +........+.++.+|+|-|+++ +|.++..+..+....++ +..+|.+++|++..|+. .|....+.
T Consensus 393 if----~~~~-l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~ 467 (735)
T KOG3626|consen 393 IF----MLVV-LASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV 467 (735)
T ss_pred hH----HHHH-HHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence 42 2232 56666777788899999999965 89999998888865555 56677788999999875 34444444
Q ss_pred hHHHHHHHHH
Q 010433 358 GTEMIIYMVI 367 (511)
Q Consensus 358 ~~~~~~~~~~ 367 (511)
.+...+.++.
T Consensus 468 ~~~~~l~l~~ 477 (735)
T KOG3626|consen 468 IVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=155.30 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=129.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL---NACAVHISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~ 155 (511)
|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++|++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888889999999999999999999999988877654443332 22234577788899999988887777
Q ss_pred hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhc-
Q 010433 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ- 234 (511)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~- 234 (511)
....++.|++|++.|++++++......++..++|.+.+.+.... .+|+.++++..+++++.++..+++||+|+|+.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST-QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 88888999999999999999744444455567777654443322 2578777777777776666666789999998765
Q ss_pred ----CCHHHHHHHHHHHhC
Q 010433 235 ----GKLDEARKVLEKVRG 249 (511)
Q Consensus 235 ----~~~~~~~~~~~~~~~ 249 (511)
++.+|+++.+.+++.
T Consensus 441 ~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 TPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccccchhhHHHHhhcccc
Confidence 888999999988873
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-15 Score=138.23 Aligned_cols=356 Identities=19% Similarity=0.149 Sum_probs=214.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhhh
Q 010433 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 78 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 154 (511)
+|+|+++..-+.+.|.--.-+..+++|+++||+ |+|+.++.|.++..++.++.+.+. +...+.++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 578999999999999988889999999999996 999999999999999999999984 78899999999999999999
Q ss_pred hhhhhHhHhcCCCC--CCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccC------
Q 010433 155 QAVPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE------ 226 (511)
Q Consensus 155 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e------ 226 (511)
+...+++.|.+|++ +|-..++++.++.++|..++|++.+.. .+..||+..|.+.++-..+.++.....+.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~--~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL--AINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 99999999999853 477889999999999999999995444 34568999999988877766554433321
Q ss_pred ---ChhHHHhcCCHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHHHhccCChHHhhccC----CchhHHHHHH
Q 010433 227 ---TPNSLVEQGKLDEARKVLEKVRGTANV--------DAEFSDLIDASNAARAIKNPFRNLFKKK----NRPQLVIGAL 291 (511)
Q Consensus 227 ---sp~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 291 (511)
.|..+ +..+........-...-. .+..........-. ....-+.+.++.+ .+++....+.
T Consensus 214 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~er~r~~~~~~ 288 (498)
T COG3104 214 GVPDPNPL----SFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISIL-IAIIYFAEAFRSPKVFDERRRLLAAIP 288 (498)
T ss_pred CCCCccch----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 11111 111111111100000000 00000000000000 0000000111110 1111111111
Q ss_pred -----HHHHHhhhcchhhHHhcHHHHHHH--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------hHHHhh
Q 010433 292 -----GIPAFQQLTGMNSILFYAPVIFQS--LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR-------AFFLEA 357 (511)
Q Consensus 292 -----~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~ 357 (511)
.+.+...--....+..|.....++ +|++ ....+..+...+..++..++..++..|.+++ .-+..+
T Consensus 289 Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalG 367 (498)
T COG3104 289 LFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALG 367 (498)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHH
Confidence 011111111122223333322221 2322 2345667777777888888888777774333 223445
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHH
Q 010433 358 GTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT 437 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 437 (511)
..++..+++++.........+ ......++.+. ..++........+|+...++..+.|+...+..+++.......+.
T Consensus 368 l~l~g~~fl~l~~~~~~~~~~---~~~~s~~~lil-~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~ 443 (498)
T COG3104 368 LILAGLGFLILLLAGIWFGGP---SGLVSVWWLVL-SYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQ 443 (498)
T ss_pred HHHHHHHHHHHHHHHHhhcCC---CCCcCHHHHHH-HHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 555555555555442222111 11222333333 33334444677888888888899999999999998877777777
Q ss_pred HHHHHHHH
Q 010433 438 ALIAQAFL 445 (511)
Q Consensus 438 ~~~~~~~~ 445 (511)
.++..+.+
T Consensus 444 ~l~g~va~ 451 (498)
T COG3104 444 TLGGQVAG 451 (498)
T ss_pred Hhhceecc
Confidence 77777666
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=125.95 Aligned_cols=326 Identities=13% Similarity=0.089 Sum_probs=210.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----hhHHH-HHHHHHHHHHHHHHHHh-----h--------H-H--
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-----RRASI-MVGSVSFFIGAILNACA-----V--------H-I-- 136 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~l-~~~~~l~~~~~~~~~~~-----~--------~-~-- 136 (511)
+++....+.+.+...+... ..+.+|+.+|+.+ ||..+ ..|..+...+..+.+++ . . .
T Consensus 11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~ 89 (403)
T PF03209_consen 11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL 89 (403)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence 7788888888888777654 6899999999998 77554 55777777766655543 2 1 1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCcc-chHHHHHH--HHH
Q 010433 137 SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLA--TVP 213 (511)
Q Consensus 137 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~-wr~~f~~~--~~~ 213 (511)
....+.-.+.|+|.+...+...++++|..|+++|+++.++...+..+|.+++..+.+.... .++ -|..-.+. +++
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~--~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD--PFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc--ccCHHHHHHHHHHHHHH
Confidence 2344566889999999999999999999999999999999999999999999998544433 222 22222222 222
Q ss_pred HHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHH
Q 010433 214 ATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGI 293 (511)
Q Consensus 214 ~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (511)
.++..++..+=.|.++. ..+. . .++++...+..++++..++..++....++ +
T Consensus 168 ~~~l~~ia~wg~E~r~~-~~~~-------------~-------------~~~~~~~f~~a~~~~~~~~~a~~f~~fl~-l 219 (403)
T PF03209_consen 168 ALLLNLIALWGQEPRRS-RRAA-------------A-------------AERPRPPFREAWRQVWASPQARRFFVFLF-L 219 (403)
T ss_pred HHHHHHHHHHhcccCCc-cccc-------------C-------------CCCCCccHHHHHHHHHhCCChhHHHHHHH-H
Confidence 22222222222232210 0000 0 00001111233455565666555543332 1
Q ss_pred HHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh-hcCChhHHHhhhHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVD-KFGRRAFFLEAGTEMIIYMVIVAIT 371 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (511)
..+ +++.-...+-.|- +-+|++..+...+....+.+.+++....+++.. |.++++...++...+.+++.++...
T Consensus 220 ~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 220 GTL----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222222222222 448999999999999999999999999998776 6777777777777777777666555
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 372 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
.. ....+.......+++++.+.........+ .+..+++..|..+|.....+.+...++..+.+.+.|.
T Consensus 296 ~~----------~~~~~~~~~~~~l~G~g~G~f~vgals~m-M~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 296 GP----------LGSPWLFRPGVFLLGLGNGLFTVGALSLM-MDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred Hh----------cccchHHHHHHHHHHHhhhHHHHHHHHHH-HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 13345566666666666554443333333 4788888899999999999998888888888877663
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-18 Score=165.80 Aligned_cols=386 Identities=15% Similarity=0.124 Sum_probs=3.0
Q ss_pred hhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHH
Q 010433 38 SLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM 117 (511)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~ 117 (511)
+......+.+..+ ++.+.++| +++.++.|++.+.+-++..+..++..++.+|..|-|.+-
T Consensus 13 ~~q~~~~g~~~~~--lttiErRF------------------~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig 72 (539)
T PF03137_consen 13 LFQMMVSGYVNSS--LTTIERRF------------------GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIG 72 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH--HHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceee
Confidence 3334444444433 56778888 999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHhh--------------------------------------------------HHHHHHHHHHHHH
Q 010433 118 VGSVSFFIGAILNACAV--------------------------------------------------HISMLLLGRIFLG 147 (511)
Q Consensus 118 ~~~~l~~~~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G 147 (511)
.|.++.+++++++++-+ -+..++++.++.|
T Consensus 73 ~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~G 152 (539)
T PF03137_consen 73 IGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIG 152 (539)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred ecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHh
Confidence 99999999998876510 1467888999999
Q ss_pred hhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC----C----------------ccchHHH
Q 010433 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH----P----------------WGWRLSL 207 (511)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~----~----------------~~wr~~f 207 (511)
+|.+..++.+.+|+-|..++++-+..+|+..+...+|.++|.++++...... . -.|-.-|
T Consensus 153 iG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGf 232 (539)
T PF03137_consen 153 IGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGF 232 (539)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred ccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988876544221 0 1366667
Q ss_pred HHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHhccCChHHhhccCCchhH
Q 010433 208 GLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANV-DAEFSDLIDASNAARAIKNPFRNLFKKKNRPQL 286 (511)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (511)
++.+++.++..+.++++|+.-... ++..++.+....+....+.. ..+.++........++.....+.+++++.
T Consensus 233 li~g~~~~l~aipl~~FPk~lp~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~---- 306 (539)
T PF03137_consen 233 LICGILLFLSAIPLFFFPKKLPGT--SERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV---- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCccCCCc--ccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChH----
Confidence 777777776666666666542111 00111100000000000000 00000000000111222333444455443
Q ss_pred HHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhcC--ChhHHHhhhHHHH
Q 010433 287 VIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI-ALCIAALISMAFVDKFG--RRAFFLEAGTEMI 362 (511)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~ 362 (511)
.+... +..........++.+|.|.|+|. ++.++.++..+.....+ +.++|.+++|++.+|++ .|+......+...
T Consensus 307 f~~~~-la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 307 FMCLI-LAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 22222 55666666778889999999965 89999888887765555 67788889999999975 3444444444444
Q ss_pred HHHHHHHHHHHh------------hcC------CCC----------------------CCC-cchhHHHHHHHHHHHHHH
Q 010433 363 IYMVIVAITLAL------------EFG------EGK----------------------PLP-KGIGIFLVIVICLFVLAY 401 (511)
Q Consensus 363 ~~~~~~~~~~~~------------~~~------~~~----------------------~~~-~~~~~~~~~~~~~~~~~~ 401 (511)
++.+........ .+. ... +.+ ....+..++..++..+..
T Consensus 386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~ 465 (539)
T PF03137_consen 386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT 465 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence 443331111111 010 000 000 011122223333333333
Q ss_pred hcccccccceeecccCCccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 010433 402 GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNL-LFTALIAQAFLAALCHL 451 (511)
Q Consensus 402 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 451 (511)
+....|..... -..+|+++|+.+.|+...+.. +|.+-+|.++|.+.|..
T Consensus 466 ~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 466 FMSQVPSTLIT-LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------
T ss_pred Hhcccchheee-eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 44445554444 488899999999999977655 57788999999998863
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-13 Score=130.40 Aligned_cols=318 Identities=14% Similarity=0.114 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hhhhhhhhhhHhHhcCCCC
Q 010433 91 SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMG--IGFGNQAVPLYLSEMAPAK 168 (511)
Q Consensus 91 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 168 (511)
...+...+.++..|.++||+|||..+...++...+..+...+.. +|.++ +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44677788999999999999999999999998888888777766 44433 43432 3446678888999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHH
Q 010433 169 IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKV 247 (511)
Q Consensus 169 ~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~ 247 (511)
+|....++....+..+..++|.++...... .|.-.+|.+..+..++..+. ..++||+-. +++.+++ .....
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~~--~~~~~ 216 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQ----EKERSDA--TLREL 216 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccC----ccccccc--ccccc
Confidence 999999999999999999999997666554 46778888888888877665 567888742 1111100 00000
Q ss_pred hCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHH
Q 010433 248 RGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYS 326 (511)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 326 (511)
.... ....+..+.+....+.+..+..+..+. ...+..........-..+.++ ..++++..+.+.+
T Consensus 217 ~~~~-------------~~~~~~~~~~~~~~~~~~~r~~l~l~l-~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 217 TPGS-------------LDSSHVADAFQSLTKVGPDRLLLLLLL-VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred CCCc-------------ccchhhhhhhhhhcccCCCccchHHHH-HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 0000 000000111222222222222222121 111111111111110112233 3489999999988
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccc
Q 010433 327 SVITGIALCIAALISM-AFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSW 405 (511)
Q Consensus 327 ~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (511)
.+..+....++.++.. .+...++.|+....+.....+......+.. ..|.......+..+ ....
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------~~w~~~~~~v~~~~--~~~~ 347 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------ETWMMFAAGVVVAL--AGIV 347 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------cchhhhHHHHHHHh--hcch
Confidence 8888898999888877 777778888877777777777777776652 12333222222222 2233
Q ss_pred ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 406 GPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 406 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
.+......+...+++.+|.+.++...+..+.+.++|.+++.+...
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344456667778889999999999999999999999999987543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-15 Score=119.77 Aligned_cols=136 Identities=22% Similarity=0.362 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCC
Q 010433 89 TSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK 168 (511)
Q Consensus 89 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 168 (511)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567788999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHh-ccccC
Q 010433 169 IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPE 226 (511)
Q Consensus 169 ~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 226 (511)
+|+++.++.+....+|..+++.+++... +..+|++.+++.++..++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLA--QFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHh--cccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999966554 34589999998888777765543 34454
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=137.77 Aligned_cols=141 Identities=14% Similarity=0.015 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhc
Q 010433 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 164 (511)
Q Consensus 85 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 164 (511)
..+...+..++..++.++.|+++||+|||++++.+.++.+++.++.+++++...+++++++.|++.+..++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677789999999999999999999999999999999999999999888888999999999898999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCCh
Q 010433 165 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (511)
Q Consensus 165 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 228 (511)
+|.++|++++|+.++...+|.+++|++++.+... +...+|++.++..++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999997655432 356788888877777766666779875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=111.34 Aligned_cols=234 Identities=10% Similarity=0.084 Sum_probs=149.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|++..|++.+....+...++..++.|.++||+|||+.-+.-.++.+++++ +-..++++.++++|++.|++.+....+--
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999886 44668999999999999999999988888
Q ss_pred hHh-HhcCCCC----CCchhHHHHH-HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHH
Q 010433 159 LYL-SEMAPAK----IRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSL 231 (511)
Q Consensus 159 ~~i-~~~~~~~----~r~~~~~~~~-~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l 231 (511)
++. .|.-..+ ..+..++... ...++-.+++.+++-........|-..+|....+..++..++ ....+|.+..
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~- 222 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD- 222 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC-
Confidence 774 4543222 2222222222 222333444455544444333334578888877777766554 3345564310
Q ss_pred HhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHH
Q 010433 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 311 (511)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
..+..+ ..++.+..++.+.++++ ++.+.....+.....+.....|.|.
T Consensus 223 --~~~~~~--------------------------~~~~~~~a~~~i~~d~r----il~LG~~qslFE~smy~FVflWtPa 270 (354)
T PF05631_consen 223 --TSSSSS--------------------------LSGSFREAWRAILSDPR----ILLLGLIQSLFEGSMYLFVFLWTPA 270 (354)
T ss_pred --cccccc--------------------------hHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHheeeeece
Confidence 000000 00000112233443333 2222224555566555666677887
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010433 312 IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF 348 (511)
Q Consensus 312 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 348 (511)
+-.+ -....-|+++..+.+..++|+.+..++..+-
T Consensus 271 L~~~--~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 271 LDPD--DEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred ecCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6511 1223468899999999999998887665543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=126.94 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=121.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|++..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......+.++++.+++.|++.+++.+...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999988888888889999999999999999988877766666555555677888888899999998888878888
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccC
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (511)
.+..|.+| ++|++++++++....+|..+++.+++.... ..+|+..|++.+++.++.++..+++||
T Consensus 328 ~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAE--IWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88899997 469999999999999999999999766554 358999999888888877776666665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=123.84 Aligned_cols=376 Identities=13% Similarity=0.130 Sum_probs=214.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-----chhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHh
Q 010433 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGM 148 (511)
Q Consensus 78 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~ 148 (511)
+|+++++...+.+...+...+ -+++|.++|.+ -||+-++++.++..++.+..+.. .+.....++-++..+
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~ 98 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF 98 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 399999999988888877665 67899999976 35666677777776666655553 346666777788889
Q ss_pred hhhhhhhhhhhHhHhcCC--CCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhcc-cc
Q 010433 149 GIGFGNQAVPLYLSEMAP--AKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LP 225 (511)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~ 225 (511)
|.+.....+-+++.|... +++|+...+.......+|.+++..+++.... ..++|..|.+.+++.++..+..++ .+
T Consensus 99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~--~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD--SFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 999999999999999984 3446777888888889999999988655544 457888998888777766555444 44
Q ss_pred CChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHH-HHHHHHHHhhhcchhh
Q 010433 226 ETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVI-GALGIPAFQQLTGMNS 304 (511)
Q Consensus 226 esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 304 (511)
|.++ .+.++... . .++ +.+... ...++......+.++.+..+.... ..+ +..+... ...+
T Consensus 177 e~~~-----~~~~~~~~----~--~~~---~~~~~~---~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~-~~~a 237 (433)
T PF03092_consen 177 ERKV-----RPADEVFS----F--GKE---EVPCLF---GSFREQLSELWRALQQRAIWQPILFFIF-FFNLPPS-ISSA 237 (433)
T ss_pred hccc-----cccchhhc----c--ccc---ccchhh---HHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHhccC-CCCc
Confidence 4110 00000000 0 000 000000 001111222334444444333332 111 1111111 1111
Q ss_pred -HHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010433 305 -ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 383 (511)
Q Consensus 305 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
..++.......-++++...+....+..++.+++..+..+...+..-|+++....++..+..+.-... ....+..-..+
T Consensus 238 ~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l-v~~~n~~~Gi~ 316 (433)
T PF03092_consen 238 SSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL-VTRWNLDLGIP 316 (433)
T ss_pred cEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE-EEEEeeeeCcC
Confidence 1112111111223788888888877778888888877777666676766654444333222211111 00000000011
Q ss_pred cchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------hhh
Q 010433 384 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK--------FGI 455 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 455 (511)
+. +..+.-..+........+.|.... .+|+.|+...|+.+++...+.+++..++..+...+.+..+ ...
T Consensus 317 d~--~f~lgd~~l~~~~~~i~~mP~lvl-~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~ 393 (433)
T PF03092_consen 317 DQ--WFALGDTILEEVIGMIAFMPSLVL-AARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWL 393 (433)
T ss_pred Ce--EEEEEhHHHHHHHHHHHHHHHHHH-HHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence 11 222333333444444455555333 4799999999999999999999999999999888876654 122
Q ss_pred HHHHHHHHHHHHHHHHhccccCCC
Q 010433 456 FLVFGGLVVIMSAFIYFFLPETKQ 479 (511)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~ 479 (511)
..++..++.++.+.+..++++.++
T Consensus 394 lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 394 LILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCch
Confidence 333333333444444556665444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=128.27 Aligned_cols=149 Identities=14% Similarity=0.225 Sum_probs=125.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhhhhhhhh
Q 010433 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 80 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~ 155 (511)
.+..+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988877766632 346677889999999999999
Q ss_pred hhhhHhHhcCCCCCCchhHHHHH-HHHHHHHHHHHHHHHhhcccCC----ccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 156 AVPLYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHP----WGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
....++.|++|+++|++++++.+ ...++|.++||++++.+..... +||+..|.+.++..++..++ .++++|+.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999997 6789999999999877665432 57999999888887776554 55567653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-13 Score=129.50 Aligned_cols=148 Identities=12% Similarity=0.129 Sum_probs=125.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999989999999999999999999999988888888
Q ss_pred hHhHhcCCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 159 LYLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
.++.|.+|++.|+...+. ++....+|.++++.+.+.+.+ ..|||..|.+.++..++..+. .+.+++.|
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~--~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD--SIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH--hhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999887665 677888999999999665554 458999999888877665544 44444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=124.50 Aligned_cols=137 Identities=11% Similarity=-0.002 Sum_probs=117.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI--SMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~ 156 (511)
+.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+..+.+++.++..+.++. ..+++..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 6788889999999999999999999999999999999999999888888877776643 33556778889888888888
Q ss_pred hhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Q 010433 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM 217 (511)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~ 217 (511)
...++.|.+|+++|+++.++.+....+|..++|.+.+... +..||++.|.+.++..++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~--~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL--TEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH--hhhchhhHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999965554 3458999999888776654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=124.81 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=123.4
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 373 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
..+...........+.|.+.+++|.+..+.++......++.+++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-- 102 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-- 102 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--
Confidence 334344444556677888888899999999999999999999999999999999999999888877766665554432
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010433 374 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 453 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (511)
...+..++...+.+.+.+... +....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++
T Consensus 103 -----------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 103 -----------TNVTQLLILRFLAGLGLGGLM-PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred -----------cchHHHHHHHHHHhcccccch-hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 112333444444444444333 44466678999999999999999999999999999999999888776
Q ss_pred hhHHHHH-HHHHHHHHHHHhccccC
Q 010433 454 GIFLVFG-GLVVIMSAFIYFFLPET 477 (511)
Q Consensus 454 ~~~~~~~-~~~~~~~~~~~~~~~~~ 477 (511)
...+.+. .+..+...+...+++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCC
Confidence 6544444 34444444555556654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=120.39 Aligned_cols=144 Identities=24% Similarity=0.325 Sum_probs=131.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRA-SIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.++..+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 668999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (511)
..++.|..|+++|++.+++.+....+|..+++.+.+.... ..+|+..+++.+++.++..+..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~--~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD--TGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999665543 4589999999999888876655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=118.69 Aligned_cols=145 Identities=16% Similarity=0.189 Sum_probs=121.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|.+..+.+++.+.......++.++.|++.||+|||+.+..+.++..+..+...+.++.+.+++.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899988888777888999999999999999999888777766666666778888888899999999998888888
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccC
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (511)
.++.|..|+ ++++++++.+....+|..++|.+++.... ..||+..|++.++..++..+...+++|
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE--RWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHHHHHheecC
Confidence 999999875 56799999999999999999999665543 358999999988888777666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=119.28 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=138.0
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+.+...+..--.+..-.|.+.++.++|..+.|.+.+...+..-++.++.|.++||.+.|..+..++++.++..+++++..
T Consensus 36 iGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~ 115 (448)
T COG2271 36 IGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh
Confidence 34444444445566778888899999999999999999999999999999999999999999999999999988888863
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHH--HHHHHh
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAF--LAALCH 450 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~ 450 (511)
..+...++..+-+...+.+++|....+ ..-+|+++||+..++.|+..++|+.+.+++. +.+..+
T Consensus 116 -------------s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 116 -------------SLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred -------------HHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 335566677777888889998886666 5999999999999999999999999999999 888887
Q ss_pred cchhhHHHHHHH-HHHHHHHHHhccccC
Q 010433 451 LKFGIFLVFGGL-VVIMSAFIYFFLPET 477 (511)
Q Consensus 451 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 477 (511)
.++...+++.++ ++++++++++..+++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 776665555444 445555555555544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-12 Score=122.80 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=121.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77888999999999999999999999999999999999887777777777777778888888888899998888888999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (511)
+++.|.+|+++|+++.++.+....+|..++|.+++.+.... .+|...++......++..+..+++
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976665432 356667766666655555544444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-12 Score=122.47 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHh
Q 010433 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (511)
Q Consensus 84 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 163 (511)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44666778888999999999999999999999999998888888888888888888899999999999988888888899
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccC
Q 010433 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (511)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (511)
.+|+++|+++.++++....+|..+++++.+.... ..||+..|++.++..++..+..+++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS--WFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998888554443 358999999988887776665554544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=120.00 Aligned_cols=171 Identities=12% Similarity=0.114 Sum_probs=124.9
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR00891 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP 98 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555566667777888888999999999999999999999999999999999999999888777766665554431
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+..+....+.+.+.+... +....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+
T Consensus 99 -------------~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 99 -------------GYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred -------------cHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12334444455555544343 3335556799999999999999999999999999999988877655
Q ss_pred --hhhHHHHHHHHHHHHHHHHhccccC
Q 010433 453 --FGIFLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 453 --~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
+...+.+.++..+...+.....||+
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555555554444444444445554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.5e-12 Score=122.46 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=124.3
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+...........+.|.+.+++|++..+.++..+...++..+++++.|++.||+|||+.+..+.++..++.++.....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 109 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS 109 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 33444444444567788999999999999999999999999999999999999999999998888887777766555432
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+.......+.+.+.+..+. ....++.|.+|+++|++++++.+....++..+++.+.+.+.+..+
T Consensus 110 -------------~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 175 (434)
T PRK11663 110 -------------SLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG 175 (434)
T ss_pred -------------HHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 123333333344444444443 335566799999999999999999999999999999999988888
Q ss_pred hhhHHHHHHHH-HHHHHHHHhccccC
Q 010433 453 FGIFLVFGGLV-VIMSAFIYFFLPET 477 (511)
Q Consensus 453 ~~~~~~~~~~~-~~~~~~~~~~~~~~ 477 (511)
+...+...++. ++..++..++++++
T Consensus 176 w~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 176 WRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77665554443 33333444445543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=117.78 Aligned_cols=173 Identities=15% Similarity=0.066 Sum_probs=126.3
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+.++....-.....+..|.+.+++|++..+.++..+...++..++++..|++.||+|||+.+..+.++..++.++....
T Consensus 15 ~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~- 93 (412)
T TIGR02332 15 ILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA- 93 (412)
T ss_pred HHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-
Confidence 4555555555666667777778899999999999999999999999999999999999999888887777777666553
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH-- 450 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 450 (511)
...+.....-.+.+.+.+... +....++.|.+|+++|++++++.+....+|..+++.+.+.+.+.
T Consensus 94 ------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 94 ------------TGPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred ------------cCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 112334444455555554333 44455668999999999999999999999999999998887642
Q ss_pred ----cchhhHHHHH-HHHHHHHHHHHhccccCCC
Q 010433 451 ----LKFGIFLVFG-GLVVIMSAFIYFFLPETKQ 479 (511)
Q Consensus 451 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 479 (511)
.++...+.+. ...++...+.+++++|+++
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4565555544 3334444555566776653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=117.55 Aligned_cols=169 Identities=11% Similarity=0.078 Sum_probs=117.5
Q ss_pred HHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
..+....+.+....++|.++ +++|++..+.++..+...+..+++++..|+++||+|||+.+..+.....++.+.+.+..
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence 44455556666677777777 45899999999999999999999999999999999999988887777666665554431
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+..+....+.+.+.+ ...+....+..|..|++.|+++.|+.+...+++..++|.+.+.+.+ .+
T Consensus 95 -------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g 159 (395)
T PRK10054 95 -------------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS 159 (395)
T ss_pred -------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 12223333333333333 2334445566799999999999999999999999999999998775 45
Q ss_pred hhhHHHHHHHHHHHH-HHHHhccccC
Q 010433 453 FGIFLVFGGLVVIMS-AFIYFFLPET 477 (511)
Q Consensus 453 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 477 (511)
+...+...+++.++. ++..+++++.
T Consensus 160 ~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 160 INLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 554444444444433 3333444443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-10 Score=106.89 Aligned_cols=339 Identities=12% Similarity=0.083 Sum_probs=207.0
Q ss_pred cCCchHHH-HHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLT-LFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+..++..+.++...+-+..++.|++.+. ..+-
T Consensus 36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay 114 (412)
T PF01770_consen 36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAY 114 (412)
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHH
Confidence 66666654 455566667788889999999999999999999999999999999999999999999999998875 6678
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCH
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKL 237 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~ 237 (511)
.+++-...|+++-.++.+...++.-+|..++.++|-.+......+.+..+++......+.++..+++|..++...-+++.
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~ 194 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKP 194 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccC
Confidence 88898889999989999999999999999999988777766666778887777766666666677788766533333222
Q ss_pred HHHHH--H--HHHHhCCCcch-----HHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhc
Q 010433 238 DEARK--V--LEKVRGTANVD-----AEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (511)
Q Consensus 238 ~~~~~--~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
++... . .++..+..+.. .+..........-+.....+++..+++.....- +.+.....+++...+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WS-----lWWa~atcgy~qv~nY 269 (412)
T PF01770_consen 195 PAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWS-----LWWAFATCGYYQVINY 269 (412)
T ss_pred ccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHH-----HHHHHHHhHHHHHHHH
Confidence 11110 0 00000000000 000000000000011112233333444322222 3445556666667777
Q ss_pred HHHHHHHc---CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 309 APVIFQSL---GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 309 ~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
...+.++. +....-.|..-....+.+.++.+..|++..++.+...+..+......+.+++.... ..
T Consensus 270 vQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~-----------t~ 338 (412)
T PF01770_consen 270 VQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF-----------TG 338 (412)
T ss_pred HHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-----------hh
Confidence 77766665 33344557777778888888888999986666655444444333332222222221 13
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL 435 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 435 (511)
..|...+..+++...+..........++ .....+.-+...|+.++...+
T Consensus 339 ~Iwv~Y~~yIif~~~y~fliTiA~~qIA-~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 339 NIWVCYAGYIIFRSLYMFLITIASFQIA-KNLSEERYALVFGINTFVALV 387 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccceeeeeeeHHHHHHH
Confidence 3455555555555555544433333332 333344455566655444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-12 Score=120.79 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=120.6
Q ss_pred hhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
.......|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++..+.....
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---------- 80 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG---------- 80 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----------
Confidence 3455566777788999999999999999999999999999999999999998888777776666655431
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 462 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (511)
..+...+...+.+.+.+... +....++.|.+|+++|+.++++.+....++..+++.+.+.+.+..++...+...++
T Consensus 81 ---~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (399)
T TIGR00893 81 ---AYVSLYILRVLLGAAEAPFF-PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV 156 (399)
T ss_pred ---CHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 23444455555555554433 44456678999999999999999999999999999999998888776655554444
Q ss_pred HH-HHHHHHHhccccCC
Q 010433 463 VV-IMSAFIYFFLPETK 478 (511)
Q Consensus 463 ~~-~~~~~~~~~~~~~~ 478 (511)
.. +..++.....++++
T Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHhhheecCCC
Confidence 33 33333444455443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.1e-12 Score=120.46 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhc
Q 010433 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 164 (511)
Q Consensus 85 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 164 (511)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++++++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999888888888888888999999999998888888899999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHh
Q 010433 165 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (511)
Q Consensus 165 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (511)
+|+++|+++.++.+....+|..++|++.+.... ..||+..|.+.++..++..+..
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT--SFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999665544 3589999999888777765543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=116.12 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=122.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|.+..+.|.+.+...++..++.++++++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|++.+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHH-HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHh
Q 010433 159 LYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (511)
.++.+. |+++|++..++++ ...++|.++++.+++.+.+. .|+ ..|++.+.++++..++.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~--~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT--LGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHHHH
Confidence 999998 9899999999986 57889999999997777654 365 55666666666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-12 Score=122.20 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=114.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhh--cchhHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS--RGRRASIM--VGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr--~Grr~~l~--~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
|.+..+.+++.++..++..+++++.|+++|| +++|+... .+.++.+++.++..+.++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 7789999999999999999999999999997 33443333 3444445556666778899999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV 219 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 219 (511)
+...+++.|.+|++++++++++++....+|.++||.+++...... .+|+..|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-CCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999965444322 1599999998887665543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=113.34 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=119.7
Q ss_pred HHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHhhhHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVIVAIT 371 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (511)
..+.....++.+..++|.++.+ +|++..+++...........++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555677788899998854 899999999999999999999999999999999 99999988888877776544321
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 372 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE--MRSAGQSVVVCNNLLFTALIAQAFLAALC 449 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 449 (511)
. ...........+...+.+.. .+....+++|.+|++ .|.++.++.+...++|+.++|.+.+.+.+
T Consensus 97 ~------------~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 97 E------------IHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred h------------cchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00111222222233333322 233355678999875 69999999999999999999999999988
Q ss_pred hcchhhHHHHHHHHHHHHHHHHh
Q 010433 450 HLKFGIFLVFGGLVVIMSAFIYF 472 (511)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
..++...+..+++..+.+++.+.
T Consensus 164 ~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 164 EYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred hhChHHHHHHHHHHHHHHHHHHH
Confidence 88876665555555555554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=119.03 Aligned_cols=137 Identities=16% Similarity=0.076 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHh
Q 010433 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (511)
Q Consensus 84 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 163 (511)
..+.+.+++.++..++.+.+|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 35667777888889999999999999999999999988888888888888888999999999999999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhc
Q 010433 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (511)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (511)
..|+++|++.+++.+....+|..+||.+++.+.. ..||+..|++.++..++..+..+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~--~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA--NYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh--hcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765543 45899999999888877665543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-11 Score=113.74 Aligned_cols=166 Identities=18% Similarity=0.168 Sum_probs=119.8
Q ss_pred hcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCC
Q 010433 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 378 (511)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
...........|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+......
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~------ 91 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN------ 91 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc------
Confidence 33444455567888888999999999999999999999999999999999999999888777777666555431
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 010433 379 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLV 458 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (511)
..+...+...+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+.
T Consensus 92 -------~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 163 (385)
T TIGR00710 92 -------NIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163 (385)
T ss_pred -------cHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 12333334444444443333 3345566799999999999999999999999999999999888877665444
Q ss_pred H-HHHHHHHHHHHHhccccCC
Q 010433 459 F-GGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 459 ~-~~~~~~~~~~~~~~~~~~~ 478 (511)
. ..+..+...+..+..+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 164 FLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 4 3333444444444555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=115.06 Aligned_cols=145 Identities=14% Similarity=0.043 Sum_probs=120.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|++..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+..++...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888877777766766777877777788899998888888888
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccC
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (511)
++..|..| +++++..+.......+|..++|.+.+.... ..||+..+++.++..++..+....+++
T Consensus 317 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 317 TLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA--HFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH--HhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 88888775 556788889888999999999999665554 358999999888887777655555543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=118.82 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=118.5
Q ss_pred cchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCC
Q 010433 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG 379 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (511)
.....+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------- 81 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------- 81 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-------
Confidence 3445566677888888999999999999999999999999999999999999999988887777776665542
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcchhhHHH
Q 010433 380 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ-AFLAALCHLKFGIFLV 458 (511)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 458 (511)
..+..++...+.+.+.+.. .+....++.|.+|+++|+.+.++.+....++..++++ +.+.+.+..++...+.
T Consensus 82 ------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 82 ------SLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred ------hHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 2234444444555544433 3445666789999999999999999999999999995 5455555556554444
Q ss_pred HHH-HHHHHHHHHHhccccCC
Q 010433 459 FGG-LVVIMSAFIYFFLPETK 478 (511)
Q Consensus 459 ~~~-~~~~~~~~~~~~~~~~~ 478 (511)
..+ +..+..++...+.++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHheeeCCCc
Confidence 333 34444444455555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=106.48 Aligned_cols=169 Identities=19% Similarity=0.174 Sum_probs=138.7
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..|......+...-.+|.+-+++|.+..++|...+.+..+..++.++...+.||+.||+.+.....+..++.++..+..
T Consensus 20 ~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp 99 (394)
T COG2814 20 LAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP 99 (394)
T ss_pred HHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666777788889999999999999999999999999999999999999999999999999988888888887763
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
+.+..++.-.+.+...+..+ ++...++.++.|+++|++++++..+...++..++.++..++-+..|
T Consensus 100 -------------~f~~Ll~aR~~~g~a~G~f~-~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 100 -------------SFAVLLLARALAGLAHGVFW-SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 23455555666666665444 4556677899999999999999999999999999999999999999
Q ss_pred hhhHH-HHHHHHHHHHHHHHhccc
Q 010433 453 FGIFL-VFGGLVVIMSAFIYFFLP 475 (511)
Q Consensus 453 ~~~~~-~~~~~~~~~~~~~~~~~~ 475 (511)
|...+ .+..+..+..+..+..+|
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 87544 455555555556666777
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-11 Score=115.03 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=115.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... + .......+++.|++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 77888999999999999999999999999999999999888888777665443 2 23445677888888888889999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (511)
+++.|..|+++++.+.+.+....++|.++||.+++...+ ..+|++.|.+.+...++..+..++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~--~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ--NYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999988888888888888999999999999766544 3579999998888777665554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=112.38 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=116.4
Q ss_pred hHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010433 304 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 383 (511)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
......|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+.+..+..+..++.+.....
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------ 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 34445788888999999999999999999999999999999999999999998888777776665543
Q ss_pred cchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 010433 384 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV 463 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (511)
+..+..++...+.+.+.+. ..+....+..|.+|+++|++++|+......++..++|++.+.+.+..++...+...++.
T Consensus 95 -~~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 95 -WNFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred -ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 1223333444444444332 22344455678999999999999999999999999999999988887876555544443
Q ss_pred H-HHHHHHHhccccC
Q 010433 464 V-IMSAFIYFFLPET 477 (511)
Q Consensus 464 ~-~~~~~~~~~~~~~ 477 (511)
. +.........|+.
T Consensus 173 ~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 173 ALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCCCC
Confidence 3 3333334444543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=115.43 Aligned_cols=150 Identities=18% Similarity=0.139 Sum_probs=111.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh--HH--HHHHHHHHHHHhhhhh-h
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HI--SMLLLGRIFLGMGIGF-G 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~--~~l~~~r~l~G~~~~~-~ 153 (511)
|.+....++......+...++.+++|+++||+|||+.++.+..+.+++.++.+... +. .....+.++.+++.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 66666677777778888899999999999999999999999999888887765442 11 1223344444544443 3
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc----ccCCccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE----KIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~----~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
.+....++.|.+|+++|++++++......+|.++++.+..... ..+..+|++.|++.++.+++..++ .++.||++
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 3677899999999999999999999999999988876633222 223468899998888877776555 44567764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=113.49 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=109.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~ 154 (511)
|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+..... ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 5666665556666667778889999999999999999888877665554433221 234455556677788888888
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHH-HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCC
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 227 (511)
+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+.+......+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888999999999999998888854 4455888999988766655433468888888877777766665566664
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=111.51 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=114.0
Q ss_pred hHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010433 304 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 383 (511)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
......|.+.+++|+++.+.++..+...++..+++++.|++.||+|||+.+..+..+..++.+.....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34445777888999999999999999999999999999999999999999998888887776665443
Q ss_pred cchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 010433 384 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV 463 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (511)
...+..++...+.+.+.+... +....++.|.+|+++|+.+.++......++..++|.+.+.+.+..++...+.+.++.
T Consensus 106 -~~~~~l~~~r~l~G~~~g~~~-~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGGFW-AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 222444444455555554433 444556689999999999999999999999999999999998888876555544433
Q ss_pred H
Q 010433 464 V 464 (511)
Q Consensus 464 ~ 464 (511)
.
T Consensus 184 ~ 184 (394)
T PRK10213 184 G 184 (394)
T ss_pred H
Confidence 3
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=114.20 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=117.1
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+..........+..|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++.+......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 104 (426)
T PRK12307 25 LGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS 104 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555556667777788999999999999999999999999999999999999999988888887776665542
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+...+...+.+.+.+..+ +....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+
T Consensus 105 -------------~~~~l~~~r~l~G~g~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 105 -------------GVIMLTLSRFIVGMGMAGEY-ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred -------------HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 12344444455555544333 3335556799999999999999999889999999988888877777
Q ss_pred hhhHHHHHHH
Q 010433 453 FGIFLVFGGL 462 (511)
Q Consensus 453 ~~~~~~~~~~ 462 (511)
+...+.+..+
T Consensus 171 w~~~f~i~~~ 180 (426)
T PRK12307 171 WRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHH
Confidence 7665555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=112.51 Aligned_cols=167 Identities=12% Similarity=0.075 Sum_probs=121.4
Q ss_pred HhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhh
Q 010433 296 FQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 375 (511)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (511)
+....+........|.+..+.+.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~- 87 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL- 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 3334444556667788888899999999999999999999999999999999999999988877766666555544211
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 010433 376 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGI 455 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (511)
.....+...+...+.+.+.+.. .+....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++..
T Consensus 88 -------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 159 (365)
T TIGR00900 88 -------GGLNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW 159 (365)
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 0012344444455555554433 34445666899999999999999999999999999999999988888766
Q ss_pred HHHHHHHHHHHHHHHH
Q 010433 456 FLVFGGLVVIMSAFIY 471 (511)
Q Consensus 456 ~~~~~~~~~~~~~~~~ 471 (511)
.+...++..+...+..
T Consensus 160 ~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 160 AIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555554444443333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.7e-11 Score=114.25 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=125.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999998888888888888888888888888888888899999999988888888
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHHhccccCCh
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPETP 228 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~esp 228 (511)
+++.|..|++.|+++++++.....+|..+|+.+.+.+.. ..|++..+++.+...++. .+....++|.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA--MMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH--HhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999665554 357788887777665554 34455566654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=112.95 Aligned_cols=169 Identities=9% Similarity=0.094 Sum_probs=124.0
Q ss_pred HHHHhhhcchhhHHhcHHHHHHH---cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHhhhHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQS---LGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIV 368 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~ 368 (511)
...+....+++....++|.|+++ +|++..+++.......++..++.+++|+++|| +|||+.+..+..+..++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 44555666778888889999865 79999999999999999999999999999999 899999999888888877666
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccc---hhhHHHHHHHHHHHHHHHHHHHHH
Q 010433 369 AITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM---RSAGQSVVVCNNLLFTALIAQAFL 445 (511)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~~~~~~~~~~~ 445 (511)
.... ..+.......+.+.+.+. ..+....+.++.+|++. |+.+.++.+...++|..+++.+.+
T Consensus 97 ~~~~-------------~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g 162 (475)
T TIGR00924 97 AMSI-------------YPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG 162 (475)
T ss_pred Hhcc-------------cHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence 5431 112233333344444333 33444555678887653 888999999999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHhccc
Q 010433 446 AALCHLKFGIFLVFGGLVVIMSAFIYFFLP 475 (511)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
.+.++.++...+...++..+.+.+.+.+.+
T Consensus 163 ~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 163 VIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999887876665555554444444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-11 Score=115.78 Aligned_cols=144 Identities=14% Similarity=0.029 Sum_probs=107.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL--NACAVHISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+ ....++.+...+.+++.|++.......
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 889999999999999999999999999999999998876655444443322 223356666778888888654433333
Q ss_pred hhhHhHhcCCCCCCchhHHHHHHHHHH-HHHHHHHHHHhhcc----------cCCccchHHHHHHHHHHHHHHHHhc
Q 010433 157 VPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEK----------IHPWGWRLSLGLATVPATLMFVGGL 222 (511)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~~~~----------~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (511)
......|.+|+++|+++.|+.+....+ |..++|.+.+...+ ....+|+..|++..+..++..+..+
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 346677999999999999999988886 77888888665555 0034799999888777776655444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=116.04 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=113.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh-----h------HHHHHHHHHHHHH
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----V------HISMLLLGRIFLG 147 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~------~~~~l~~~r~l~G 147 (511)
|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++. + +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999999999888888877766521 1 3333333333333
Q ss_pred hhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHh-ccccC
Q 010433 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPE 226 (511)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 226 (511)
.......+....++.|.+|+++|++++++......+|.+++|.+.+.... ..+|++.|++.++++++..+.. ++.||
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE--SIGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccceehhHHHHHHHHHHHHheeccc
Confidence 33333456667778999999999999999999999999999998554443 3479999999888877766654 45676
Q ss_pred Ch
Q 010433 227 TP 228 (511)
Q Consensus 227 sp 228 (511)
++
T Consensus 473 ~~ 474 (481)
T TIGR00879 473 TK 474 (481)
T ss_pred CC
Confidence 54
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-10 Score=109.56 Aligned_cols=147 Identities=13% Similarity=0.085 Sum_probs=114.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 78899999999999999999999999999999999999888887777766554333 22222 2346688888888877
Q ss_pred hhHhHhcCC-CCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 158 PLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 158 ~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
.....+..+ +++|+++.++.+....++..++|.+.+.+.+..+ +|+..|++.++.+++..+. ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777775 5688999999999999999999999776665432 4888888877777766544 45567765
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=9e-11 Score=113.68 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=106.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHH--HHHHHh--hHHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGA--ILNACA--VHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~--~~~~~~--~~~~~l~~~r~l~G~~~~~~~ 154 (511)
+.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+. ++.+.+++..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 6788899999999999999999999999999999998775554444333 222222 466777788899999999999
Q ss_pred hhhhhHhHhcCCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhcccCCcc-chHHHHHHHHHHH
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPAT 215 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~~~~~~~~~-wr~~f~~~~~~~~ 215 (511)
+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.... | |+..++...+..+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~--g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT--GDWYAIGYYLAALAL 391 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc--CcchhHHHHHHHHHH
Confidence 9999999999999999999998 45667789999999976665433 4 8877766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-10 Score=109.95 Aligned_cols=172 Identities=12% Similarity=0.146 Sum_probs=120.9
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
...+....+........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++........
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~ 89 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE 89 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444555566778888899999999999999999999999999999999999999998888777666665554331
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+..+....+.+.+.+... +....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+
T Consensus 90 -------------~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 90 -------------TSSLFLAGRFLQGIGAGCCY-VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred -------------cHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 12223333334444433222 3345566799999999999999999999999999988888777777
Q ss_pred hhhHH-HHHHHHHHHHHHHHhccccCC
Q 010433 453 FGIFL-VFGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 453 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 478 (511)
+...+ +.+.+..+...+.....+|++
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 65544 444444444444455566554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-10 Score=111.97 Aligned_cols=156 Identities=17% Similarity=0.061 Sum_probs=117.3
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
...+......+.+..+.|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 95 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS- 95 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence 4455555566677788999999999999999999988889999999999999999999999887766666655543332
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
...+..+....+.+.+.+... +....++.|.+|+++|+++.|+.+....++..++|.+.+.+.++.+
T Consensus 96 ------------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g 162 (471)
T PRK10504 96 ------------GTLNELLLARVLQGVGGAMMV-PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS 162 (471)
T ss_pred ------------CCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 122334444555555544333 3445566799999999999999999999999999999999998888
Q ss_pred hhhHHHHHHH
Q 010433 453 FGIFLVFGGL 462 (511)
Q Consensus 453 ~~~~~~~~~~ 462 (511)
+...+.+...
T Consensus 163 w~~~f~~~~~ 172 (471)
T PRK10504 163 WHWIFLINIP 172 (471)
T ss_pred HHHHHHHHHH
Confidence 6655444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.9e-10 Score=108.95 Aligned_cols=138 Identities=9% Similarity=-0.023 Sum_probs=96.8
Q ss_pred HHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHh
Q 010433 295 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 374 (511)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (511)
.+......+....+.|.+.+++|++..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.++.....
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-- 122 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-- 122 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc--
Confidence 333333444556667788888999999999988888899999999999999999999988877776666655544431
Q ss_pred hcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 375 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 447 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (511)
..+..++..++.+.+.+. ..+. ..+++|.+|++.|+.++|+.+....+++.+++.+.+.+
T Consensus 123 -----------s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 123 -----------SATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred -----------CHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333334443332 2222 33457999999999999999888888887777666544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=111.12 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=118.5
Q ss_pred hhhcchhhHHhcHH-HHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhh
Q 010433 297 QQLTGMNSILFYAP-VIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 375 (511)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (511)
.............| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---- 82 (352)
T PF07690_consen 7 LSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---- 82 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh----
Confidence 33334445566667 5667799999999999999999999999999999999999999888888877774444322
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 010433 376 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGI 455 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (511)
...+..++..++.+.+.+... +....++.|.+|+++|+.++++.+....++..+++.+.+.+.+..++..
T Consensus 83 ---------~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~ 152 (352)
T PF07690_consen 83 ---------SNFWLLLIARFLLGIGSGFFS-PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW 152 (352)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred ---------hhHHHHhhhcccccccccccc-ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence 112344555555555554343 4446666899999999999999999999999999999999887777665
Q ss_pred HHHHHHHHHHHHHH-HHhcccc
Q 010433 456 FLVFGGLVVIMSAF-IYFFLPE 476 (511)
Q Consensus 456 ~~~~~~~~~~~~~~-~~~~~~~ 476 (511)
.+.+.++..+...+ ...+.++
T Consensus 153 ~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 153 AFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCC--
T ss_pred ccccccchhhhhhhhHhhhhhh
Confidence 55544444444433 3334433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=113.37 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=118.5
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+.............|.+.+++|.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++.+......
T Consensus 27 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (496)
T PRK03893 27 LGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP 106 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444555566677888888999999999999999999999999999999999999998888777777666655431
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
..+...+...+.+.+.+... +....++.|.+|++.|+.+.++......++..+++.+.+.+.+..+
T Consensus 107 -------------~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 107 -------------GYWTLFIARLVIGMGMAGEY-GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 12333444444444444333 3334556799999999999999999999999999999999888877
Q ss_pred hhhHHHHHHHHHHH
Q 010433 453 FGIFLVFGGLVVIM 466 (511)
Q Consensus 453 ~~~~~~~~~~~~~~ 466 (511)
+...+.+..+..+.
T Consensus 173 w~~~f~~~~~~~~~ 186 (496)
T PRK03893 173 WRALFFIGILPIIF 186 (496)
T ss_pred HHHHHHHHHHHHHH
Confidence 77665554443333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=113.18 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=109.9
Q ss_pred hhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
..+....|.+. +.|.++.+.++......++..++.++.|++.||+|||+.+..+.++.+++.+.......
T Consensus 44 ~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (438)
T TIGR00712 44 KNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW--------- 113 (438)
T ss_pred ccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc---------
Confidence 33445566555 46999999999999999999999999999999999999888776666665555433210
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHH-H
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-HLKFGIFLVF-G 460 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 460 (511)
.....+...+...+.+.+.+..+++. ...+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|...+.. +
T Consensus 114 ~~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~ 192 (438)
T TIGR00712 114 ATSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPA 192 (438)
T ss_pred ccchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 00112223333344444444444433 3445689999999999999999999999999988876554 3455554444 4
Q ss_pred HHHHHHHHHHHhccccC
Q 010433 461 GLVVIMSAFIYFFLPET 477 (511)
Q Consensus 461 ~~~~~~~~~~~~~~~~~ 477 (511)
.+..+..++.+++++|+
T Consensus 193 ~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 193 ICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 44444444555555554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-10 Score=108.36 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=109.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHH-HHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM-VGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGF 152 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~-~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~ 152 (511)
|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++.+.++++.++.|++.+.
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999988764 333334444333332 24567777889999998887
Q ss_pred hhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc
Q 010433 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (511)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (511)
..+ ....+.|.. +++|++++++.+....+|..++|.+++.... ..||+..|++.++..++..+..+++
T Consensus 333 ~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~--~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 333 YVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG--FFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHh
Confidence 655 445667765 5689999999999999999999999665544 4589999999888877766555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=112.75 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=106.9
Q ss_pred HHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 305 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
+....|.+.++ |++..+.++..+...++..+++++.|+++||+|||+.+..+..+..++.+.+.+.... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~---------~ 117 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------T 117 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc---------c
Confidence 45567776666 9999999999999999999999999999999999999888887777666655543100 0
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcchhhHHHH-HHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFL-AALCHLKFGIFLVF-GGL 462 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~ 462 (511)
...+..+....+.+.+.+..+++.. ..+.|.+|+++|++++|+.+....+++.+.+++.+ ......+|...+.+ +.+
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1122333444444555554444443 33468899999999999998888888755554433 23223355444433 333
Q ss_pred HHHHHHHHHhccccC
Q 010433 463 VVIMSAFIYFFLPET 477 (511)
Q Consensus 463 ~~~~~~~~~~~~~~~ 477 (511)
..+..++..++++++
T Consensus 197 ~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 197 AILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHccCC
Confidence 444445555556654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-10 Score=107.03 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=122.4
Q ss_pred HHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHh
Q 010433 295 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 374 (511)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (511)
.+.............|.+.+++|.+..+.++..+...++..+++++.|++.||+|||+.+..+..+..++.++....
T Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--- 88 (382)
T PRK10091 12 TFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--- 88 (382)
T ss_pred HHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh---
Confidence 33344444556667888889999999999999999999999999999999999999999998888877777665543
Q ss_pred hcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 010433 375 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG 454 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (511)
+..+..++...+.+.+.+... +....+..|.+|+++|+.++++......++..+++++.+.+.+..++.
T Consensus 89 ----------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr 157 (382)
T PRK10091 89 ----------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR 157 (382)
T ss_pred ----------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence 223444444455555444333 333445578889889999999998888999999999988888877776
Q ss_pred hHHHHHHHHH-HHHHHHHhccccCC
Q 010433 455 IFLVFGGLVV-IMSAFIYFFLPETK 478 (511)
Q Consensus 455 ~~~~~~~~~~-~~~~~~~~~~~~~~ 478 (511)
..+...++.. +..+.....+|+.+
T Consensus 158 ~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 158 YTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5555444433 33333444556543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-10 Score=105.79 Aligned_cols=161 Identities=10% Similarity=-0.029 Sum_probs=112.9
Q ss_pred hhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
..+....|.+.+++|.++.+.++..+...++..++++..|++.||+|||+.+.........+.. .....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~---------- 76 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP---------- 76 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh----------
Confidence 3455677888899999999999999999999999999999999999998876544333322211 11110
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH-HH
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVF-GG 461 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 461 (511)
...+..++.-.+.+.+.+. ..+. ....+|.+|+++|++++++.+....+|..+++.+.+.+.++.+|...+.. ++
T Consensus 77 --~~~~~l~~~R~l~G~g~~~-~~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~ 152 (368)
T TIGR00903 77 --FNYEWLLACQLLAALGQPF-LLNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAA 152 (368)
T ss_pred --ccHHHHHHHHHHHHhHhHH-HHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 1123344444555555442 2222 23336889999999999999999999999999999998888888766555 45
Q ss_pred HHHHHHHHHHhccccCC
Q 010433 462 LVVIMSAFIYFFLPETK 478 (511)
Q Consensus 462 ~~~~~~~~~~~~~~~~~ 478 (511)
+..+..++.++++||.+
T Consensus 153 l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 153 VAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 45555555666677654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-10 Score=110.66 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=124.3
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+....-......-.|.+.+++|.+..+.++....+.++..++.+..|+++||+|||+.+..+..+..++.+.....
T Consensus 13 ~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a- 91 (495)
T PRK14995 13 LVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-
Confidence 4555555555666777899999999999999999999999999999999999999999999999888888777776654
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeeccc-CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSEL-FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
...+..++.-.+.+.+.+... +.......+. .|+++|++++|+......++..++|.+.+.+.++.
T Consensus 92 ------------~~~~~li~~r~l~G~g~~~~~-~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 92 ------------PTASWLIATRALLAIGAAMIV-PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 223444444455555544333 2223323344 47789999999999999999999999999999988
Q ss_pred chhhHHHHHH-HHHHHHHHHHhccccC
Q 010433 452 KFGIFLVFGG-LVVIMSAFIYFFLPET 477 (511)
Q Consensus 452 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ 477 (511)
+|...+.+.. ++.+...+..+++|+.
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8766555443 3333334444555553
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=105.66 Aligned_cols=167 Identities=16% Similarity=0.117 Sum_probs=117.4
Q ss_pred HHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHH
Q 010433 295 AFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 373 (511)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
.+....+.+....+.|.++ +++|+++.+.++......+...+..++.|+++||+|||+.+..+.....++.+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-- 96 (400)
T PRK11646 19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--
Confidence 3444444455566666665 6689999999999999999999999999999999999999998888877777666543
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010433 374 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 453 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (511)
+..+.......+.+.+.+.. .+....++.|..|+++|+++.|+.+....++..++|.+.+.+. ..++
T Consensus 97 -----------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~ 163 (400)
T PRK11646 97 -----------HEPWLLWLSCILSGLGGTLF-DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDF 163 (400)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 12233444444444443322 3333455678899999999999999999999999999999988 5565
Q ss_pred hhHHHHHHHH-HHHHHHHHhcccc
Q 010433 454 GIFLVFGGLV-VIMSAFIYFFLPE 476 (511)
Q Consensus 454 ~~~~~~~~~~-~~~~~~~~~~~~~ 476 (511)
...+.+.++. ++..++..++.++
T Consensus 164 ~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 164 RLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5544443333 3333333344444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=113.71 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=123.6
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+.............|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 87 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-
Confidence 3444444445566677898889999999999999999999999999999999999999999988887777766655432
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
...+..+....+.+.+.+. ..+....++.|.+|++.|+.+.++......++..+++.+.+.+.++.+
T Consensus 88 ------------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 88 ------------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred ------------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 1223334444444444443 334446667899999999999999999999999999999999988877
Q ss_pred hhhHHHHHH-HHHHHHHHHHhccccC
Q 010433 453 FGIFLVFGG-LVVIMSAFIYFFLPET 477 (511)
Q Consensus 453 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 477 (511)
+...+.... +..+...+..+..+++
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 665444433 3333333344445543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=105.86 Aligned_cols=159 Identities=10% Similarity=0.057 Sum_probs=113.1
Q ss_pred HhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 306 LFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
..-+|.+.+++|.+..+.+...+...++..+++++.|+++||+|||+.+..+..+..++.+..... .
T Consensus 36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------------~ 102 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------------T 102 (413)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------------C
Confidence 334455667899999999999999999999999999999999999999988877666665555443 1
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVI 465 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
..+..++.-.+.+.+.+ ...+....+..|.+|++++++++++.+....++..++|.+.+.+.++.++...+...++..+
T Consensus 103 ~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~ 181 (413)
T PRK15403 103 SMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL 181 (413)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22333444444444433 22233455667899999999999999999999999999988888887777665555444443
Q ss_pred HHHH-HHhccccCC
Q 010433 466 MSAF-IYFFLPETK 478 (511)
Q Consensus 466 ~~~~-~~~~~~~~~ 478 (511)
...+ ..+.+||++
T Consensus 182 i~~~~~~~~lp~~~ 195 (413)
T PRK15403 182 IAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHhCCCCc
Confidence 3333 344566654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=105.39 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=112.7
Q ss_pred hhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
.......|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 93 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----------- 93 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344445777888899999999999999999999999999999999999999888777666665554432
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 462 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (511)
...+..++...+.+.+.+.. .+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..++...+.+.++
T Consensus 94 --~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~ 170 (394)
T PRK11652 94 --HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL 170 (394)
T ss_pred --ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 11223333333333333322 233344556788888899999998888888999999999988887776655544433
Q ss_pred -HHHHHHHHHhccccCC
Q 010433 463 -VVIMSAFIYFFLPETK 478 (511)
Q Consensus 463 -~~~~~~~~~~~~~~~~ 478 (511)
..+...+..++.+|++
T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 171 LGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHhCCccC
Confidence 3333334445556543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=105.61 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=114.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHH-HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV 219 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 219 (511)
.++.+. +++++++..+... ...++|..+||.+++.+.+. .|+ ..++..+++.++.++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~--~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH--LGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHH
Confidence 998887 5667788888876 56678889999997666543 355 456666655554433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-09 Score=106.86 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=106.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHH
Q 010433 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLF 397 (511)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (511)
.+..+.+++.....++.+++.++.+++.||+|||+.+..+.++..++.++...... ..+....+..++.-.+.
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG-------SSPKSVMATLCFWRFWL 125 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC-------cccchHHHHHHHHHHHH
Confidence 34456678889999999999999999999999999988877777766655444210 00001123445555556
Q ss_pred HHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hcchh
Q 010433 398 VLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-----------------------HLKFG 454 (511)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ 454 (511)
+.+.+... +....+.+|.+|++.|++++++.+....+|..+++.+...+.. ..+|.
T Consensus 126 G~~~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIGGDY-PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHhhhh-HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 66655444 3446677899999999999999999999988888877765432 12466
Q ss_pred hHHHHHHHHHHHHHHHHhccccCC
Q 010433 455 IFLVFGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~ 478 (511)
..+.+.++..+...+..+++||+.
T Consensus 205 ~~~~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 666666655555556666788863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=105.09 Aligned_cols=171 Identities=14% Similarity=0.056 Sum_probs=116.6
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 373 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
..+........+....|.+.+++|.++.+.+.......++..++.++.|+++||+|||+.+..+.....++.+......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~- 99 (406)
T PRK15402 21 FEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ- 99 (406)
T ss_pred HHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-
Confidence 3333333444455566777788999999999999999999999999999999999999998887777666655544431
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010433 374 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 453 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (511)
..+..+....+.+.+.+.. .+.......|.+|++.|..+.++......++..++|.+.+.+.+..++
T Consensus 100 ------------~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 100 ------------SIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred ------------cHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 1233333333334333322 233455567889999999999988888888889999999888887776
Q ss_pred hhHHHHHHHH-HHHHHHHHhccccCC
Q 010433 454 GIFLVFGGLV-VIMSAFIYFFLPETK 478 (511)
Q Consensus 454 ~~~~~~~~~~-~~~~~~~~~~~~~~~ 478 (511)
...+.+.+++ .+.....+...||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6554443333 333333444455543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-08 Score=94.33 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCC
Q 010433 89 TSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK 168 (511)
Q Consensus 89 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 168 (511)
.++-+....+++++.+.+.|+.|.|..++++...+....+..-+ +|-+-+++.-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77778888999999999999999999999999998887776644 45667788999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 010433 169 IRGAVNQLFQLTTCLGILVANLIN 192 (511)
Q Consensus 169 ~r~~~~~~~~~~~~~G~~~g~~l~ 192 (511)
++.+..++.......+.++|..+-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999999999999999987763
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=105.82 Aligned_cols=169 Identities=12% Similarity=0.084 Sum_probs=122.1
Q ss_pred HHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHhhhHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIVAI 370 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~ 370 (511)
...+....+++....+++.|++ ++|++..++.+..........+..+++|+++|| +|||+.+..+.++..++.+.+.+
T Consensus 21 ~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~ 100 (489)
T PRK10207 21 FVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM 100 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777778887774 599999999888888887788888899999999 99999999999988888777665
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 371 TLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE--MRSAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
.. .......+...+.+.+.+... +....++.|.+|++ +|+.++++.+...++|..++|.+.+.+.
T Consensus 101 ~~------------~~~~ll~~~~~l~~ig~g~~~-~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 101 SL------------LKPDLIFIALGTIAVGNGLFK-ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred hc------------cchhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 42 111222233444444444343 34456678999877 4577899999999999999999999999
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHhcc
Q 010433 449 CHLKFGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
++.+|...+.+..+..+.+++.+...
T Consensus 168 ~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 168 DKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 98887666555555455444444433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=103.10 Aligned_cols=142 Identities=15% Similarity=0.074 Sum_probs=103.6
Q ss_pred HHHhhhcchhhHHhcHHH-HHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPV-IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
..+..+........+.|. +.+++|+++.+.++......++..++.++.|++.||+|||+.+..+..+..++.+......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~ 88 (366)
T TIGR00886 9 GFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV 88 (366)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555667778885 5577999999999999999999999999999999999999999988888777776665542
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 449 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 449 (511)
...+..++...+.+.+.+ .+.+ ...++.|.+|+++|+.+.++......++..+++.+.+.+..
T Consensus 89 ------------~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 89 ------------QSYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ------------hhHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 022333334444444322 3333 34556799999999999999887777777777777665554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=105.38 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=116.6
Q ss_pred HHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 305 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
.....|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..++........
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~------------ 77 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ------------ 77 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc------------
Confidence 44567788888999999999999999999999999999999999999999888877777766665431
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVF-GGLV 463 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 463 (511)
..+.......+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+.. +.+.
T Consensus 78 -~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 78 -TIDQLIYMRFLHGLAAAAAS-VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred -cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 12333334444444443332 33345667999999999999999999999999999999998887776554444 3333
Q ss_pred HHHHHHHHhccccC
Q 010433 464 VIMSAFIYFFLPET 477 (511)
Q Consensus 464 ~~~~~~~~~~~~~~ 477 (511)
.+..++..++.+|+
T Consensus 156 ~~~~~~~~~~~~~~ 169 (377)
T PRK11102 156 ILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHhCCcc
Confidence 44444444555554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-09 Score=102.89 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=107.8
Q ss_pred cHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010433 308 YAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIG 387 (511)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
..|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+..... ...
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~~ 94 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------ESA 94 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------cCH
Confidence 3344567799999999999999999999999999999999999999887777666655554432 112
Q ss_pred HHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 010433 388 IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 467 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (511)
+..++...+.+.+.+... +....+..|.+|++.++...+..+....++..++|.+.+.+.+..++...+....+..+..
T Consensus 95 ~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL 173 (401)
T ss_pred HHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 223333333333322222 2223455788998888888888888888999999999999988888765554444444444
Q ss_pred HHHHhccccC
Q 010433 468 AFIYFFLPET 477 (511)
Q Consensus 468 ~~~~~~~~~~ 477 (511)
.+..++.++.
T Consensus 174 ~~~~~~~~~~ 183 (401)
T PRK11043 174 ILPTLRLKPS 183 (401)
T ss_pred HHHHHHcCCC
Confidence 4444444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=93.66 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=114.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-------VHISMLLLGRIFLGMGIG 151 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~ 151 (511)
|+|.+|...+.++..+|..+ .++.|.+.||+|+|.++.+|.+...++..+..++ +++|.+.+..++.|.+.+
T Consensus 33 ~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~ 111 (250)
T PF06813_consen 33 GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC 111 (250)
T ss_pred CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence 99999999999999999886 5889999999999999999999999998877654 467888888899999888
Q ss_pred hhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCCh
Q 010433 152 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (511)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 228 (511)
....++.....+.|| ++||++.|+.-...+++..+-..+.......+ .-+..+.+...+.++.++..++++..|
T Consensus 112 ~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~--~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 112 WFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD--PSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 777777777778997 68999999999999999888777744444332 234444444445555555555554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=111.40 Aligned_cols=145 Identities=10% Similarity=-0.044 Sum_probs=106.2
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010433 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 394 (511)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+++++..+.+.+.....++..+++++.|++.||+|+|+.+..+.++..++.++...... ...+..++.-
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----------GGIALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----------cCchHHHHHH
Confidence 56888899999999999999999999999999999999888887776666555433210 1113334444
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHH
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL-KFGIFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 471 (511)
++.+.+.+..+ +....++.|.+|+++|++++|+.+....++..+++.+.+.+.+.. ++...+.+.++..+...+.+
T Consensus 139 ~~~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 139 VIQGLAQGSVS-PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred HHHHHhcccch-hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence 55555544443 444566689999999999999999999999999999999998874 76655555444444333333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-07 Score=88.70 Aligned_cols=342 Identities=13% Similarity=0.006 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--------h-------HHHHHHHHHHHHHhhh
Q 010433 86 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------V-------HISMLLLGRIFLGMGI 150 (511)
Q Consensus 86 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--------~-------~~~~l~~~r~l~G~~~ 150 (511)
+...-.-.+...+.++..|.+.||..|.+++..+++..-++..+.+.. + .+..+++.-.+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 334444455677888999999999999999888776665544433221 1 1122222222222222
Q ss_pred hhhh-hhhhhHhHhcC------CCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hc
Q 010433 151 GFGN-QAVPLYLSEMA------PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GL 222 (511)
Q Consensus 151 ~~~~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~ 222 (511)
-... ....++=.||. +++.+.+.++...-.--+.-+++|++.+.+. ...+.+....+.+...++..+. .+
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~--t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLM--TFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11122223553 2344556677777777888999999954443 3346777777766666665444 22
Q ss_pred cc----cCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhh
Q 010433 223 FL----PETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298 (511)
Q Consensus 223 ~~----~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
++ ...|. +..+++.++.+...+.. ...+.+.+....+...+.-++....++..++++.+...+-..+ .++.
T Consensus 199 ~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alal--LY~T- 273 (432)
T PF06963_consen 199 LLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALAL--LYFT- 273 (432)
T ss_pred HHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHH--HHHH-
Confidence 22 22332 22222222111100000 0001111111111112222333566777777665444332222 1111
Q ss_pred hcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCC
Q 010433 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 378 (511)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
.-.+...+..|+...|+++...+.+-....+.++.+.++..++.+|+|..+.-.++.......+.+....... .
T Consensus 274 ---VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~---~ 347 (432)
T PF06963_consen 274 ---VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWA---P 347 (432)
T ss_pred ---HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhc---C
Confidence 1223445566777789999999999999999999999999999999998887777766554443333332211 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 010433 379 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIA 441 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 441 (511)
.++.+......++..+.+.-.|.- ++.-....+..|..|+++||...|+-+...++...+--
T Consensus 348 ~~~~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 348 GSPFSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 111011222233333333333322 22233345568999999999999998888877655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-09 Score=98.67 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=123.8
Q ss_pred hHHhcHHHHHHHcCCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 304 SILFYAPVIFQSLGFGSGA-ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
...+..|.+.+++|++..+ .+.+...+..+..+..+..|+++||+|.|+.+..+.+...+..++.++..
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~---------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT---------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3455567777889999999 99999999999999999999999999999999988888777777777652
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---hHHHH
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG---IFLVF 459 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 459 (511)
..+.+.+.-++++.+-+..+ ..+.++.+.+|+++|+++.|+.+....+|.++++++.+. ....++. ....+
T Consensus 114 ---Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~I 187 (511)
T TIGR00806 114 ---SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNII 187 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHH
Confidence 12445556666777666555 445666799999999999999999999999999999998 4455543 33445
Q ss_pred HHHHHHHHHHHHhccccCC
Q 010433 460 GGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~ 478 (511)
......++++..+++|..+
T Consensus 188 sl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 188 SLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 5555566666777777443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=102.61 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=110.9
Q ss_pred HHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 305 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
.....+.+.++++.++.+.++......+...+..++.|++.||+|||+++..+..+..++.+.+....
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------------ 89 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------------ 89 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------------
Confidence 34445556678888888999999999999999999999999999999999988887776655543321
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
. . +....+.+.+.+ ...|....++.|.+|+++|++++|+.+....++..++|.+.|.+.+.. +...+...+.+.
T Consensus 90 ~--~--~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~ 163 (393)
T PRK11195 90 H--P--LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIY 163 (393)
T ss_pred H--H--HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1 1 222233444433 344555667789999999999999999999999999999999988764 333333333333
Q ss_pred HHHHHHHhccccC
Q 010433 465 IMSAFIYFFLPET 477 (511)
Q Consensus 465 ~~~~~~~~~~~~~ 477 (511)
+...+..+.++|.
T Consensus 164 ~~~~~~~~~l~~~ 176 (393)
T PRK11195 164 LLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHhcCCCC
Confidence 3344444556654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-09 Score=103.38 Aligned_cols=149 Identities=10% Similarity=0.093 Sum_probs=129.6
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchh--HHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHH
Q 010433 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR--ASIMVGSVSFFIGAILNAC--------AVHISMLLLGRIFL 146 (511)
Q Consensus 77 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~l~~~~~l~~~~~~~~~~--------~~~~~~l~~~r~l~ 146 (511)
++|++..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++.+.+.+.-++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 3488999999999999999999999999999999999 8999998888776666666 67888999999999
Q ss_pred HhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccC
Q 010433 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (511)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (511)
|++.|..++...++.+|..|+++.+..+|++....-....+||++-+......+ +-|..+....++.++.+++.++++.
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999666555443 4788888887777777776666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=105.57 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=125.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
|.+....|++.+++.+|..++.++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++.........
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH
Q 010433 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
+.+.+..|++.|||+++++.+....+..+|.++.+.+.. ..|-+..+.+.++..++..++
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~--~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD--HFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999665544 347888888777655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=106.09 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=113.3
Q ss_pred cCCchHHHHHHH-HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHH---HHh-hHHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTS-SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACA-VHISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~~~~ 153 (511)
|.+..+.+++.. ...++..++.+++|+++||+|+|+.+..+.++.+++.++. +.. ++.+.+.+.-++..++.+..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 889999999974 5668999999999999999999998877666555544332 232 35555555667766666666
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCC
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 227 (511)
.+...++..+..+++.+++..++.+...++|..+++.+++.+.. ..||+..|.+.++.+++..+...+++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~--~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE--AHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77778889999999999999999999999999888877655554 3489999999888888876665555543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=104.27 Aligned_cols=140 Identities=10% Similarity=0.141 Sum_probs=117.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+.+..+.|.+.++..+...++.+..|++.||+|||+.+.++.++.++...+..++++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999888878888999999999999999877777777
Q ss_pred hHhHhcCCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH
Q 010433 159 LYLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
.+..+..+++.++...+. .+....+|.++++.+++.+.+ ..||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~--~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD--SIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH--hcccHHHHHHHHHHHHHHHHH
Confidence 778888888888777666 678899999999999666654 348999999988887765443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-09 Score=100.41 Aligned_cols=137 Identities=9% Similarity=-0.094 Sum_probs=104.4
Q ss_pred chhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCC
Q 010433 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK 380 (511)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
.........|.+.+++|.+..+.++..+...++..++.+..+++.||+|||+.+..+..+.+++.++......
T Consensus 18 ~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~------- 90 (410)
T TIGR00885 18 ANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE------- 90 (410)
T ss_pred HHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3344456778888889999999999999999999999999999999999999999998888887766543310
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 381 PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
....+..+...++.+.+.+....+. ..++.+..|++.|++..++.+....+|..+++.+.+.+.
T Consensus 91 ---~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 ---IMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred ---hccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122334444555555555444333 334467788899999999999999999999999988775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=97.36 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=97.1
Q ss_pred HHHHhhhcchhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 371 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (511)
+.....+...+.+....+.+-+ ++|++..+.+++.++..+...+.++..|++.||+|.|+....+.++..+..+.....
T Consensus 41 ~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a 120 (462)
T PRK15034 41 SCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIA 120 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455444 699999999999999999999999999999999999999988888777766655543
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010433 372 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLA 446 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 446 (511)
.. ...+..+..++...+.+.+ +..+.+ ....+++.+|+++||++.|+....+++|..+.+.+.+.
T Consensus 121 ~~--------~~~~s~~~lli~r~l~Gig-g~~f~~-~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 121 VQ--------NPNTPFGIFIVIALLCGFA-GANFAS-SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred Hc--------ccCCCHHHHHHHHHHHHHH-HHhHHH-HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 10 0011223344444444444 334433 45556899999999999999976667666655555543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=106.24 Aligned_cols=136 Identities=20% Similarity=0.110 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhhhhhhhhhhhhHhHhcCC
Q 010433 89 TSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI--SMLLLGRIFLGMGIGFGNQAVPLYLSEMAP 166 (511)
Q Consensus 89 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 166 (511)
.....+...++.++.+++.||+|||+.+..+.++.+++.++..+.++. +..++.-++.+++.+...+....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556777888999999999999999999999999888888777644 455566677778788888889999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCCh
Q 010433 167 AKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (511)
Q Consensus 167 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 228 (511)
++.|++++++.+....+|.+++|.+.+ .. ..++..++++.+...++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LG---EKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH---HHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999865 22 23567788888887777777777888875
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-09 Score=100.36 Aligned_cols=140 Identities=19% Similarity=0.080 Sum_probs=107.4
Q ss_pred cCCchHHHHHHHHHHH-HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhhh
Q 010433 79 KYDNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC------AVHISMLLLGRIFLGMGIG 151 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~ 151 (511)
|++.+++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 8899999999888764 66778899999999999999988877666443333221 1233344555666677778
Q ss_pred hhhhhhhhHhHhcCCC-CCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH
Q 010433 152 FGNQAVPLYLSEMAPA-KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 152 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
...+...+.+.+..++ +++++.++..+...++|..++|.+++...+ ..||+..|++.++..++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~--~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD--RFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHH
Confidence 8888888888888776 789999999999999999999999776654 347999998888776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-08 Score=95.83 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=112.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh---hHHH------HHHHHHHHHHhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---VHIS------MLLLGRIFLGMG 149 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---~~~~------~l~~~r~l~G~~ 149 (511)
|++..+..+..........+..+++.++.||+|||+.++.+..+..+..++.... .+.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999888877654 1111 223444444444
Q ss_pred hhh-hhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCC
Q 010433 150 IGF-GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPET 227 (511)
Q Consensus 150 ~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es 227 (511)
.+. .-|...-+.+|.+|++.|+.++++.....-+...+-... +....+..|= +.|++..+++++..+. +..+|||
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~--fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA--FPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 443 467788889999999999999999988888887777666 3333333333 6777777777776554 6779998
Q ss_pred h
Q 010433 228 P 228 (511)
Q Consensus 228 p 228 (511)
.
T Consensus 458 k 458 (485)
T KOG0569|consen 458 K 458 (485)
T ss_pred C
Confidence 5
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-09 Score=97.38 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=131.0
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 010433 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 77 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
++|++..+..++.-...+..+++++++|++.||+|.|+++..++++..+.++...+...-..+.++-.+.|.+.|+.+..
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 34999999999999999999999999999999999999999999999999998888888788888889999999999999
Q ss_pred hhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCC
Q 010433 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (511)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 227 (511)
+-++.++..|+++-++.+|+++...-.+..+||.+-+......+ +-|.-+....++..+.++..+++|+.
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999999999999999999999999999999999666655544 46777766666666666666666653
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=100.16 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=87.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHH-HH---HhhHHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL-NA---CAVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~-~~---~~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
|++..+.++....+.++..++.+++|+++||+|||+.+..+.++..+.... .. ..+++..+.+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 778888899988999999999999999999999999887765544332211 11 12344444455666677777777
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHH-HHHHHHHHHHHHHHhhccc
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKI 198 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~~~~~ 198 (511)
+....++.|.+|+++|+.+.++... +..++..++|.+.+...+.
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 7777889999999999999998544 4445567788886555443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=100.80 Aligned_cols=161 Identities=9% Similarity=-0.013 Sum_probs=110.6
Q ss_pred HHHHhhhcchhhHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHhhhHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIVAI 370 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~ 370 (511)
...+....+++....+++.++ +++|++..+++..............++.|+++|| +|||+.+..+..+..++..++..
T Consensus 28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~ 107 (500)
T PRK09584 28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW 107 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777788888887 5699998888877776665555556789999999 59999999888887777665544
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccc--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 371 TLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
.. ...+.......+.+.+.+... +....+..|.+|++. +..+.++.+...++|..++|.+.+.+.
T Consensus 108 ~~------------~~~~~l~~~~~l~gig~g~~~-~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 108 SG------------HDAGIVYMGMATIAVGNGLFK-ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred hc------------ccHHHHHHHHHHHHHhhhccc-CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111223333344444444333 444456678887643 456788888999999999999999999
Q ss_pred HhcchhhHHHHHHHHHHH
Q 010433 449 CHLKFGIFLVFGGLVVIM 466 (511)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~ 466 (511)
++.++...+...++..+.
T Consensus 175 ~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 175 AKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HhhCHHHHHHHHHHHHHH
Confidence 988877655555543333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-08 Score=99.58 Aligned_cols=146 Identities=13% Similarity=-0.023 Sum_probs=92.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHH--H--hhHHHHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA--C--AVHISMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~~~~~ 154 (511)
|.+..+.++..++..++..+++++.|+++||+|||+.+..+..+.++..+... . .++....+..-.+.+++.+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 67888889999988888899999999999999999988776555443332221 1 1222222222232333344444
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHHHHHH-HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccC
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (511)
+....++.|++|++.|+.++|+.+....+ .....|.+...... ...|...++..++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~--~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS--IGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 56677889999999999999998765443 23346666443321 113556666666666655555444443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=99.29 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=110.2
Q ss_pred cchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCC
Q 010433 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG 379 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (511)
...+.+..+.|.+.+++|++..+.+.+..... ......++.|++.||+|+|+.+.++.++..++.++.++.....
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~---- 115 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV---- 115 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 33456677888888889999999888876633 3345666789999999999999999999888888777642100
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH
Q 010433 380 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVF 459 (511)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (511)
-....+.+.+..++.+.+.+...... ...+.+.+| +.||.+.|+......+|+.+.+.+...+........+++.
T Consensus 116 ---i~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l 190 (591)
T PTZ00207 116 ---IEGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL 190 (591)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 01123434444444444443333333 333467787 6799999999999999998777776665543223344555
Q ss_pred HHHHHHHHHHHHhccccC
Q 010433 460 GGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~ 477 (511)
+.+..+.+++...+++..
T Consensus 191 ~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 191 MSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHhheeCC
Confidence 555555555555555433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=93.98 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=114.3
Q ss_pred hhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcC
Q 010433 298 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 377 (511)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (511)
.+...+.+....+.+-+++|+|+.|.+++..+..+.+.+.++..|.+.||+|.|+....+.++..+-.+.+.+...
T Consensus 26 ~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~---- 101 (417)
T COG2223 26 GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---- 101 (417)
T ss_pred HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc----
Confidence 3333344444445555779999999999999999999999999999999999999999888888877777776631
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hh
Q 010433 378 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK---FG 454 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 454 (511)
....+..+.+..+.+.+ +..+ ......+++.+|++++|.++|+.. .+++|..+...+.+.+....+ +.
T Consensus 102 ------~~~~~~ll~~gll~G~~-GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~ 172 (417)
T COG2223 102 ------YPSTWQLLVIGLLLGLA-GASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWR 172 (417)
T ss_pred ------CCchHHHHHHHHHHhcc-ccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHH
Confidence 11123444444443333 2223 344566689999999999999998 899999888888888877776 44
Q ss_pred hHH-HHHHHHHHHHHHHHhcc
Q 010433 455 IFL-VFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 455 ~~~-~~~~~~~~~~~~~~~~~ 474 (511)
... +.....++..+..++..
T Consensus 173 ~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 173 NVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333 33333333344444444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-10 Score=105.21 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=131.0
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+....+..--+.+....+-.-+.+|.+....|++.....+...++++++|++.||++|++++..+..+-.++.+...+..
T Consensus 40 ~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~ 119 (493)
T KOG1330|consen 40 LVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN 119 (493)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH
Confidence 44555555445555555555556899999999999999999999999999999999999999998888888777777653
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 452 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (511)
. .|.+++.-.+.+.+-+ .+.|+...+++|.+|..+|++.+++.+.....|+.+|-.....+.+..+
T Consensus 120 ~-------------Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 120 H-------------FWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred H-------------HHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 2 3666666666666654 5667777778999999999999999999999888887777766666555
Q ss_pred -hhh-HHHHHHHHHHHHHHHHhccccCCCCC
Q 010433 453 -FGI-FLVFGGLVVIMSAFIYFFLPETKQVP 481 (511)
Q Consensus 453 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (511)
|.. +...+++..+++++..++.+|..++.
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 443 34445555555666667777766543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.2e-09 Score=99.77 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=115.7
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-----CChh-HHHhhhHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF-----GRRA-FFLEAGTEMIIYMVI 367 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~~~ 367 (511)
.++.+.........-+|.++++.|++.++.|++...... .+..++.|+++||+ |||| .+..+..+.+++...
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 355566667777888999999999999999988666554 58889999999999 7765 566656665555554
Q ss_pred HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 368 VAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 447 (511)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (511)
+.... +....+.......+.... .....+....++.|..|+++|+.+.++......++..+++.+.+.+
T Consensus 85 l~~~~----------~~~~~~~l~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 85 MAFCP----------PHAALWPLAGLAVLVAFL-SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHhcC----------ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 43321 111223233333333333 3334455566778999999999999999988889999999988888
Q ss_pred HHhc-chhhHHHHHHHHHHHHHHHHhccccC
Q 010433 448 LCHL-KFGIFLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 448 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
.+.. ++...+.+.++..+...+..+..+|+
T Consensus 154 ~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~ 184 (402)
T PRK11902 154 ADRVLGWGNTYLLMAGLMLAGALTTLWAPEP 184 (402)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8753 66665555444444444444455554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=114.63 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=117.3
Q ss_pred cCCch-HHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQ-VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~-~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|++.. +.+++.+...++..++++++|+++||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 77888 89999999999999999999999999999999999988888888888888899999999999999999999999
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATL 216 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~ 216 (511)
.+++.+..|+++|++++++.+....+|.++++.++..... ...++...|++.+.+.++
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877654433 223566666665554443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=99.11 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=99.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhhhhhhhhhh
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLLLGRIFLGMGIGFGNQAVPL 159 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 159 (511)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888899999999999999999999999999998888887777665 46677788889999999999999999
Q ss_pred HhHhcCC-------CCCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010433 160 YLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLINYGTEK 197 (511)
Q Consensus 160 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~ 197 (511)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 4567999999999999999999988665543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-09 Score=98.33 Aligned_cols=153 Identities=10% Similarity=0.027 Sum_probs=113.7
Q ss_pred chhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCC
Q 010433 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK 380 (511)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
+.....+++=-.+++.+-.+...|......-.+.++.-+..+++.+|+|+-+++..++.+..+=++.+...
T Consensus 386 g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------- 456 (618)
T KOG3762|consen 386 GVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------- 456 (618)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh---------
Confidence 33444455544567888777777888888888999999999999999999999988877776666666554
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhcchhhHHHH
Q 010433 381 PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNN-LLFTALIAQAFLAALCHLKFGIFLVF 459 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (511)
.++|..+.+-.+-+...+..|..+ ..|++...|++.+.++.++..... .+|-.+|+.+.|.+.+..+..+.+..
T Consensus 457 ----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 457 ----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred ----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 456777777788888888777665 566689999999999999986654 46777888888888888875544444
Q ss_pred HHHHHHHH
Q 010433 460 GGLVVIMS 467 (511)
Q Consensus 460 ~~~~~~~~ 467 (511)
.++.+++.
T Consensus 532 ~giAcl~~ 539 (618)
T KOG3762|consen 532 FGIACLVT 539 (618)
T ss_pred HHHHHHHH
Confidence 33333333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-09 Score=106.25 Aligned_cols=157 Identities=10% Similarity=-0.063 Sum_probs=113.3
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+.+..........++.+-++++++..+.|++.+...++..++.++.+++.||.+||+.+.++.++.+++.++..+..
T Consensus 40 ~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 40 CAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 34444444344455556666678999999999999999999999999999999999999999999999999888877654
Q ss_pred HhhcCC--C-------------------C--------------CCCc--c-hhHHHHHHHHHHHHHHhcccccccceeec
Q 010433 373 ALEFGE--G-------------------K--------------PLPK--G-IGIFLVIVICLFVLAYGRSWGPLGWLVPS 414 (511)
Q Consensus 373 ~~~~~~--~-------------------~--------------~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (511)
...-.. . . .... . ....+++.-++.+.+.+ ...++...++.
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~~~i~ 198 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGISYID 198 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCchhhh
Confidence 221000 0 0 0000 1 12233344455555544 33455677889
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 415 ELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 415 ~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999998887653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=92.41 Aligned_cols=130 Identities=12% Similarity=0.015 Sum_probs=101.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 78 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
+|+++.+.++..+.+..+..++.+..+++.||+|+|+.+.++..+..++.++....++...+ .+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999988888888777666555543333 35568899999999999
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 212 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~ 212 (511)
.+...+..|+ +.+++.++. ....+|.++.|++-+.+.+ ..|.+..|++..+
T Consensus 252 ~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad--~~g~~~a~~v~~~ 302 (310)
T TIGR01272 252 FSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLAD--CLGIQLAFALPVP 302 (310)
T ss_pred HHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHH--hccchHHHHHHHH
Confidence 9999998875 446667775 5666899999987544443 3467777764443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-09 Score=102.04 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=130.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG--RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G--rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..++++..+++.+.++++++++.++..-.+.|++.|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988 556667888889999999999999999999999999999999988
Q ss_pred hhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhcccc
Q 010433 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 225 (511)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (511)
...++.|+.+.++-..+.|+.....+++.++||++++...+... +|...|+..++..++....++..|
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHHHHHHhH
Confidence 88899999999999999999999999999999999775554443 499999999998888777666665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=95.65 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=121.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 010433 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (511)
Q Consensus 80 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 159 (511)
.++...|.+.+...+.-++...+..++.+|+|.|+.++++.++..+=.++++++++.+.+.+.+.+.|+-.+........
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCC
Q 010433 160 YLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPET 227 (511)
Q Consensus 160 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es 227 (511)
++++.+|+|-.++...+ .+.+.++|.++.+.+++.+. ++.|.+..|++.+.+.++..++ .+.+++.
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly--d~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY--DRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH--hhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999998777677766 46788999999888855554 4458899998888887766555 4445443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-08 Score=94.91 Aligned_cols=119 Identities=15% Similarity=0.041 Sum_probs=95.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|.+..+.+.+.+.+.++..+++++.|++.||+ +||+.+..+..+.+++.++..+.++..... .-++.|++.+...+..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 77889999999999999999999999999999 567777788888888777777665433322 4578899999999888
Q ss_pred hhHhHhcCC-CCCCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010433 158 PLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEKI 198 (511)
Q Consensus 158 ~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~ 198 (511)
.+.+.+..+ +++++...++.+....+|..++|.+.+.+.+.
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776655 46678889998888889999999887666543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-09 Score=83.66 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccc
Q 010433 329 ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPL 408 (511)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (511)
...++.+++.+..+++.||++||+.+..+.....++.+..... ...+.......+.+.+.+... +.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-~~ 71 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFAL-VA 71 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHH-Hh
Confidence 4567788899999999999999998887776666665544432 112333344444444444333 44
Q ss_pred cceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHHHHHhccc
Q 010433 409 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVF-GGLVVIMSAFIYFFLP 475 (511)
Q Consensus 409 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 475 (511)
...+..|..|++.|+++.++.+....++..+++.+.+.+.+..++...+.. .....+..+..+...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455668999999999999999999999999999999998887776444443 3333333334443333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-07 Score=93.08 Aligned_cols=144 Identities=8% Similarity=-0.105 Sum_probs=104.8
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 373 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
.++.............|.+.+++|.++.+.++......++..++.+..|++.||+|||+.+..+..+..++.++......
T Consensus 34 ~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~ 113 (438)
T PRK10133 34 LFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE 113 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444566677788887889999999999999999999999999999999999999999998888887766532210
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 374 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
.+..+..+....+.+.+.+...... ..++.|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 114 ----------a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 ----------IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ----------cCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222344455555566655444443 334457767666666788988998999999988876544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-08 Score=93.40 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=103.9
Q ss_pred hHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-----CChhHH-HhhhHHHHHHHHHHHHHHHhhcC
Q 010433 304 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF-----GRRAFF-LEAGTEMIIYMVIVAITLALEFG 377 (511)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 377 (511)
......|.+.++.|++.++.+..... .+...+ .++.|+++||+ ||||.+ ..+.+..++....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 34556788899999999999988655 444444 88999999998 788865 444444444433332210
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Q 010433 378 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK----- 452 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----- 452 (511)
+....+.......+...+.. ...+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 -----~~~~l~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 79 -----PSTDLPLLAGLAFLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred -----cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11112222222223333322 2334445566899999999999999999999999999999988887776
Q ss_pred ---hhhHHHHHHHHHHHHHHHHhc-cccC
Q 010433 453 ---FGIFLVFGGLVVIMSAFIYFF-LPET 477 (511)
Q Consensus 453 ---~~~~~~~~~~~~~~~~~~~~~-~~~~ 477 (511)
+...+.+.++..+...+..++ .+|.
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 666666666555555544443 4553
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-08 Score=91.66 Aligned_cols=134 Identities=27% Similarity=0.413 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhhhhhhhhhhhhH
Q 010433 83 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH--ISMLLLGRIFLGMGIGFGNQAVPLY 160 (511)
Q Consensus 83 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 160 (511)
.+.++..+.+.++..++.++.|.++||+|||+.+..+......+.++..+..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776666777777766 8999999999999999999999999
Q ss_pred hHhcCCC-CCCchhHHHHHH-HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Q 010433 161 LSEMAPA-KIRGAVNQLFQL-TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATL 216 (511)
Q Consensus 161 i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~ 216 (511)
+.|++|+ ++|+...+.... ...+|.++++.++.........+||..|.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999987 678888888888 5888888888775544433345799976666655543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=96.53 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=118.3
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010433 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 394 (511)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
++++++.+-+++......+.+++.+..+++.||+|-|+++..+.++.++..++....... ..+.+++.-
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-----------~~~~~~~~R 135 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-----------GFYLLLVLR 135 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-----------cchhhHHHH
Confidence 467888999999999999999999999999999999999999999988888888877532 123556677
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHH-HHHHHHHHHHHHHHh
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH-LKFGIFL-VFGGLVVIMSAFIYF 472 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 472 (511)
++.+++.+..++.+ ..+.++-.|+++|++..++.....++|..+.-++.|.+.+. .||...+ +.+++.++..++.++
T Consensus 136 ~lqGl~~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAI-GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHhHHHHhHHHhhh-hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 77787877777666 44557999999999999999999999999999999999988 7765544 444444444444434
Q ss_pred ccc
Q 010433 473 FLP 475 (511)
Q Consensus 473 ~~~ 475 (511)
+..
T Consensus 215 ~~~ 217 (466)
T KOG2532|consen 215 FYS 217 (466)
T ss_pred Hhc
Confidence 443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=109.43 Aligned_cols=137 Identities=16% Similarity=0.050 Sum_probs=112.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--------------------hHHHH
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------------------VHISM 138 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--------------------~~~~~ 138 (511)
|.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++. ++.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 7789999999999999999999999999998888777776666666665544443 67788
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Q 010433 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATL 216 (511)
Q Consensus 139 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~ 216 (511)
++++.++.|++.+...+...+++.+.+|+++||+++|..++...+|..+++++.+.+.. ...++...+++.++..++
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~-~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA-LGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999998665542 223566666655544333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.5e-08 Score=91.64 Aligned_cols=147 Identities=17% Similarity=0.259 Sum_probs=117.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh-hHHHHHH----HHHHHHHhhhhhhh
Q 010433 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLL----LGRIFLGMGIGFGN 154 (511)
Q Consensus 80 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~----~~r~l~G~~~~~~~ 154 (511)
.+....+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... +...++|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777888888888889999999999999999999999999999988888887 4544433 33567999999999
Q ss_pred hhhhhHhHhcCCCCCCchhHHHHHH-HHHHHHHHHHHHHHhhcccCC----ccchHHHHHHHHHHHHHHHH-hccccC
Q 010433 155 QAVPLYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKIHP----WGWRLSLGLATVPATLMFVG-GLFLPE 226 (511)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~e 226 (511)
.++..++.+..|++.|+++.++++. ..++|.++|..+++.+.+... +.|...+.+.+...++..++ ..+.+|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999876 578999999999877765432 34666677777666665544 334444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=92.62 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=92.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----cchhHHHH-HHHHHHHHHHHHHHHhhHH-----------------
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRASIM-VGSVSFFIGAILNACAVHI----------------- 136 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~l~-~~~~l~~~~~~~~~~~~~~----------------- 136 (511)
|++....+.+--...+...+.+++.|..+|| |||||.++ .+.++..++.++.+++.++
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 7788888888888888889999999999995 89877655 5666677777777776543
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCch-hHHHHHHHHHHHHHHHHHHHH
Q 010433 137 SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA-VNQLFQLTTCLGILVANLINY 193 (511)
Q Consensus 137 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~l~~ 193 (511)
..++++--+.=++.-.....+-+++.|...++++.+ +++.+....++|.++|..++.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 345555566667777888899999999998777666 999999999999999988854
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.7e-07 Score=89.21 Aligned_cols=143 Identities=14% Similarity=0.202 Sum_probs=115.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVH--------ISMLLLGRIFLGMG 149 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~--------~~~l~~~r~l~G~~ 149 (511)
|.+.+....+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.. ....+++-.+..+|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 7788888888888988889999999999996 69999999999999999988876521 23466778888899
Q ss_pred hhhhhhhhhhHhHhcCCCCC---CchhHHHHHHHHHHHHHHHHHHHHhhccc-----CCccchHHHHHHHHHHHHHHHHh
Q 010433 150 IGFGNQAVPLYLSEMAPAKI---RGAVNQLFQLTTCLGILVANLINYGTEKI-----HPWGWRLSLGLATVPATLMFVGG 221 (511)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~l~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~ 221 (511)
.|+.-|...+...|.+++++ |...+.++..+.++|..+++++....... ...+|...|.+.++..++.++.+
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 56778888889999999988875444311 12469999999888887765543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-07 Score=81.63 Aligned_cols=357 Identities=13% Similarity=0.024 Sum_probs=182.3
Q ss_pred HHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhh----
Q 010433 33 AAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR---- 108 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d---- 108 (511)
..+-+.+.|...+..+ . +|.+.+.= |.|.++.+...-++. . ...-+.|.++.|
T Consensus 36 Ll~LYllQGiP~GL~~-~--iP~lL~ak------------------~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~ 92 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-A--IPLLLQAK------------------GVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYS 92 (510)
T ss_pred HHHHHHHcCCchhHhh-h--hHHHhcCC------------------Ccchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHH
Confidence 3455688898888876 2 56665522 567666655433221 1 233577889999
Q ss_pred -hcchhHHHHH-HHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHH
Q 010433 109 -SRGRRASIMV-GSVSFFIGAILNACA-----------VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQ 175 (511)
Q Consensus 109 -r~Grr~~l~~-~~~l~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 175 (511)
|+||||.-++ +..+.+..+.+.+.- ++...+...-++.-+.++.--.+.-.+.-.+.++++.|.+..
T Consensus 93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST 172 (510)
T KOG3574|consen 93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST 172 (510)
T ss_pred HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence 9999986443 444444444444332 344444445566667777777777888888888999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-------ccch---------HHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHH
Q 010433 176 LFQLTTCLGILVANLINYGTEKIHP-------WGWR---------LSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239 (511)
Q Consensus 176 ~~~~~~~~G~~~g~~l~~~~~~~~~-------~~wr---------~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~ 239 (511)
....+...|..++..+ ++..... .+|. ...++.+...++.-.+..+..+++.. +.
T Consensus 173 ~q~Vg~~~GyfL~~~i--fLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~-------~~ 243 (510)
T KOG3574|consen 173 CQSVGQTAGYFLGNVV--FLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE-------SV 243 (510)
T ss_pred HHHHHHhhhHHhhcce--eeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch-------hh
Confidence 8888888888888766 4433220 1222 12233344444443333333332210 00
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCC
Q 010433 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFG 319 (511)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (511)
. ++.....++.-+-++++++-+..+.+..... ..-.++.+-....+.-+-+.|++
T Consensus 244 ~--------------------~e~~~~i~~~yk~l~~vLklk~v~~la~i~l-----t~K~gf~a~da~t~LkLle~Gv~ 298 (510)
T KOG3574|consen 244 D--------------------EELELGIHESYKLLRDVLKLKSVRWLAGILL-----TGKLGFQAADALTSLKLLEHGVP 298 (510)
T ss_pred h--------------------hhhhcCHHHHHHHHHHHHcCccHHHHHHHHH-----HHHHHhhhhhhccchHHHHcCCC
Confidence 0 0000001111123455666555444332222 22223333444556666788998
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH------hhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH
Q 010433 320 SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL------EAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 393 (511)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
..+-++...+..-..++.....|++.. |+|++.. .-.........+......+... ++.-+.....+.+..
T Consensus 299 ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~-~G~~~~~~~il~i~~ 375 (510)
T KOG3574|consen 299 KEELALIAVPLVPLQIALPLYIGKWTA--GPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHS-DGTFPRGYYILLITS 375 (510)
T ss_pred hhHheeeeeehhhHHHhhhhhheeecC--CCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccC-CCceeechHHHHHHH
Confidence 887666554433344444444443332 1222111 1111111111111111111100 111111122222211
Q ss_pred HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 394 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
..+........+. ...+..+++.++...|+.+.+.|+..++|+-.-..+..++.|.
T Consensus 376 y~~~~~~~ts~fv-~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 376 YAFHQVFVTSMFV-SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred HHHhhhHHHHHHH-HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 2222221111121 2234457889999999999999999999998888888877764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-08 Score=84.68 Aligned_cols=144 Identities=11% Similarity=0.004 Sum_probs=106.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVS-FFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|+|+...+.+.+....-.++.+++.|.++|++|++...+.+.++ ..++.....|+ ++.=.+...+.|++.+..-...
T Consensus 296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcsl 373 (459)
T KOG4686|consen 296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSL 373 (459)
T ss_pred CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999877665444 34444444333 2333456778888877766667
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCC-ccchHHH-HHHHHHHHHHHHHhccc
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSL-GLATVPATLMFVGGLFL 224 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~-~~wr~~f-~~~~~~~~~~~~~~~~~ 224 (511)
...++...|+++.|++.+..++..++|..+.|++++.+...++ ..|--.| .+.+.+++....+.+.+
T Consensus 374 WP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 374 WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 7778888999999999999999999999999999887777655 4454444 44444444443333333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=89.62 Aligned_cols=147 Identities=16% Similarity=0.053 Sum_probs=101.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010433 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICL 396 (511)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
+.+..-+|.+-+.+++...+.++..|.++||+|||..+..+.+..++...+.+.... ...++..=+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~--------------F~afv~aR~ 129 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN--------------FAAFVLARF 129 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 335567889999999999999999999999999999999888887776666555421 112222112
Q ss_pred HHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcchhhHH---HHHHHHHHH-HHH
Q 010433 397 FVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC---HLKFGIFL---VFGGLVVIM-SAF 469 (511)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~-~~~ 469 (511)
.+..+. +.-.+..++++|+++++.|+.+++.+++...+|-.+||.+.|.+.. ..+...+. ++..+.... ..+
T Consensus 130 l~Gi~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~ 208 (451)
T KOG2615|consen 130 LGGIFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTF 208 (451)
T ss_pred hhhhcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHH
Confidence 222222 2234457788999999999999999999999999999999998876 33322221 222222222 334
Q ss_pred HHhccccCC
Q 010433 470 IYFFLPETK 478 (511)
Q Consensus 470 ~~~~~~~~~ 478 (511)
..++++||-
T Consensus 209 ~~~~lpETL 217 (451)
T KOG2615|consen 209 FPWFLPETL 217 (451)
T ss_pred HHHhCCccc
Confidence 556778774
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-07 Score=90.03 Aligned_cols=146 Identities=17% Similarity=0.115 Sum_probs=95.6
Q ss_pred chhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh----hcCChhHHHhh-hHHHHHHHHHHHHHHHhh
Q 010433 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVD----KFGRRAFFLEA-GTEMIIYMVIVAITLALE 375 (511)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 375 (511)
++.....+.+.|++++|.++...+.......+..++..++.|+++| |+|||+.++.. .....+++.++.......
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 4556667778888999999999999999999999999999999999 59999988765 344444444443321110
Q ss_pred cCCCCCC-Ccchh---HHHHHHHHHHHHHHhcccccccceeecccCCccch--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 376 FGEGKPL-PKGIG---IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMR--SAGQSVVVCNNLLFTALIAQAFLAA 447 (511)
Q Consensus 376 ~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (511)
.....+. ..... +..+....+..+..+....|. .+++.|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00111 222223333334444444444 5567899998865 5788888888899998888877754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=81.68 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=116.0
Q ss_pred hhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhc
Q 010433 297 QQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF 376 (511)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
......+.+..|.|.+-+++|++.++...+.....++..+| +..|.+.|++|.+..+.++.....++...+.....-.
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~- 90 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR- 90 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc-
Confidence 34456678889999999999999999999988888888764 8899999999999999999999888888777664211
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhccc-ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 010433 377 GEGKPLPKGIGIFLVIVICLFVLAYGRSW-GPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGI 455 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (511)
.+....|......++.+. +..+ .........+.+| ++||++.|+.-....+++.+...+...+.+......
T Consensus 91 -----i~~~~~~~~~~~~~l~~~--s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~f 162 (250)
T PF06813_consen 91 -----IPSLPVWLMCLFLFLGGN--SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSF 162 (250)
T ss_pred -----cCccchHHHHHHHHHHcc--cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHH
Confidence 111122333322222222 2222 2222222237788 579999999999999999999998888877643444
Q ss_pred HHHHHHHHHHHHHHHHhccccC
Q 010433 456 FLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
..+.+....++.++...+++..
T Consensus 163 ll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 163 LLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHHHHHHHHHHHHhhheecc
Confidence 4444444444444444555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=92.19 Aligned_cols=145 Identities=9% Similarity=0.006 Sum_probs=114.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHH
Q 010433 316 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVIC 395 (511)
Q Consensus 316 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
.+-...+.|+++....+..++..++.|.+.||+|+|..+..+...+..+.+++.+.- ..+..+++-.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-------------sy~~l~vAR~ 167 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-------------SYPMLFVARS 167 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-------------hhHHHHHHHH
Confidence 455677899999999999999999999999999999999999999988888887762 2345666667
Q ss_pred HHHHHHhcccccccceeecccCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhcc
Q 010433 396 LFVLAYGRSWGPLGWLVPSELFPLEM-RSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
+-+.+.+..... ...+.++.+|++. |++++|+.-.+..+|..++|++.|.+++..|+..++++.+++++.-..+-+++
T Consensus 168 LQgvgsA~~~ts-glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFADTS-GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHHHhh-hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 777776655443 3556679998775 69999999999999999999999999999997766665555555544444443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=79.56 Aligned_cols=306 Identities=13% Similarity=0.158 Sum_probs=160.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+....++|.+.-+.+-...+...+.|.++|+-|||+.-+.-.+.+.+++ +.-.++.|-.++++|.+-|++.+..+.+.-
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 6677788888777777778888999999999999997554444343332 333568899999999999999998887776
Q ss_pred hH-hHhcCCCCCCchhHHHHHH--------HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChh
Q 010433 159 LY-LSEMAPAKIRGAVNQLFQL--------TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 229 (511)
Q Consensus 159 ~~-i~~~~~~~~r~~~~~~~~~--------~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~ 229 (511)
++ +.|.- ++|+.---+... +..+=.+++.+.+-.+...-..|--.+|-..+....+...+.+ ..
T Consensus 147 sWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil-----~~ 219 (454)
T KOG4332|consen 147 SWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL-----SS 219 (454)
T ss_pred HHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH-----hh
Confidence 65 56654 233322222111 1222222333332222222223445566544443333221111 11
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcH
Q 010433 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (511)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
|-.+-++..|.++.+.+. +...+.+..+++ +..+..+...+-...+.....|.
T Consensus 220 W~ENygdps~~kdlltqf-----------------------~gaa~aiaSD~k----i~LLG~iqsLFE~smytFVFLWT 272 (454)
T KOG4332|consen 220 WSENYGDPSENKDLLTQF-----------------------KGAARAIASDEK----IALLGAIQSLFEGSMYTFVFLWT 272 (454)
T ss_pred hhhccCChhhhHHHHHHh-----------------------hHhHHHHhcchH----HHHHHHHHHHHhhhhheeeeeec
Confidence 222222322222111111 111122222221 11122133333333333344455
Q ss_pred HHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 010433 310 PVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR--AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 386 (511)
Q Consensus 310 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
|.+- ++.+. .-|.++..+.+..++|+-+..++..|-..| ..+.+.+......+.+....... . ..+..
T Consensus 273 PaLspn~e~i---PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~v-----s-P~kes 343 (454)
T KOG4332|consen 273 PALSPNDEEI---PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSV-----S-PSKES 343 (454)
T ss_pred ccCCCCcccC---CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhcc-----C-CCcCC
Confidence 6542 11222 246777777888888888877776654433 33444444433333333222211 1 11344
Q ss_pred hHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHH
Q 010433 387 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV 429 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 429 (511)
+...++..+++-.+.+..|+.+...- ++..|++.|++.+-+.
T Consensus 344 ~~~s~i~F~~~E~cvGlfwPSimkmR-sqyIPEearstimNfF 385 (454)
T KOG4332|consen 344 PSESLIGFCLFEACVGLFWPSIMKMR-SQYIPEEARSTIMNFF 385 (454)
T ss_pred chHHHHHHHHHHHHHhhcchHHHHHH-HhhCCHHHHhhhhhhe
Confidence 44556777778888888887765444 6888999998765444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-07 Score=89.33 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=95.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
|.+....++......++..++.++++++.||+|+|+.+.++.++.+++.++..+.+ +++.+++..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555677888999999999999999999999998888877776653 6777778888999999999999
Q ss_pred hhhHhHhcCCCC-------CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 010433 157 VPLYLSEMAPAK-------IRGAVNQLFQLTTCLGILVANLINYGT 195 (511)
Q Consensus 157 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~~ 195 (511)
..++.+|..|.+ ++|...+..+....+|..+|+.+.+..
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888654 358889999999999999998876544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-07 Score=83.66 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcC
Q 010433 86 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 165 (511)
Q Consensus 86 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 165 (511)
+.+.-+-.+...+.-+.+-++.+|+..+.=+.....+..++.++.+++++.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666677777788888887555556667788889999999999999999999999999998888888754 55
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhc-cccC
Q 010433 166 PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPE 226 (511)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 226 (511)
++ ...+-+.++.+.+.++|+..-..+.. ...+-|..+++..++.++..+.++ .+|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 35788888999999999887433433 334557777777766655544433 3443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=89.04 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCc
Q 010433 92 LYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (511)
Q Consensus 92 ~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 171 (511)
..+.-.-|.++.+++.||+|||+.|..+++++++..++...+.+-..+.+.-+..-++.++.+.+.+.|..|.+|.+-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566778899999999999999999999999999998887755443333344444455666778999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCCh
Q 010433 172 AVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (511)
Q Consensus 172 ~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 228 (511)
...|.-+...-+|.++.|+++. ... .+-..+..+.+...++..+...++|-.+
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~-~~e---~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAM-RAE---LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHH-Hhc---cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999999962 221 1344666777777788877777777433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-07 Score=90.08 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=90.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhhhhhhh
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 155 (511)
+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777889999999999999999999999888877766655432 34567777788899999999999
Q ss_pred hhhhHhHhcCC-------CCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 010433 156 AVPLYLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLINYGT 195 (511)
Q Consensus 156 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~~ 195 (511)
...++++|..+ .++.|..++......-+|..+++.+.+..
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 23345688888888888988888775544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00013 Score=70.76 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=86.7
Q ss_pred CchHHHHHHHHHHHHHHHH-HHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----h---------------------
Q 010433 81 DNQVLTLFTSSLYFAGLVS-TFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----V--------------------- 134 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~--------------------- 134 (511)
+.+.+.++-+...+..++. .++.+++++|++|++++-.....+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467899999888877666 8999999999999999888777776666666554 1
Q ss_pred ------HHHHHHHHHHHHHhhhhhhhh-hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010433 135 ------HISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (511)
Q Consensus 135 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~ 196 (511)
+.|...+.-+...+-...... .-..++.|.++.+|-.|..+++..+.++|.++++.+.....
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333344444444444 66788999999999999999999999999999998755544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-07 Score=90.64 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhhhhhhhhH
Q 010433 83 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQAVPLY 160 (511)
Q Consensus 83 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 160 (511)
...+++..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ +.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hHhcCCC-------CCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 010433 161 LSEMAPA-------KIRGAVNQLFQLTTCLGILVANLINYGT 195 (511)
Q Consensus 161 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~~ 195 (511)
++|..+. ++.|..++..+...-+|..+++.+.+..
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 9998873 3457888888888888888888875443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=90.84 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=90.4
Q ss_pred HhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 306 LFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
...++.+..++|-+ ....++.....++..++.++.|+++|.+|||..++.+.++..++.++.....
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~------------- 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ------------- 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence 33456666778866 4446677778889999999999999999999999999988888888776542
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLV 458 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (511)
.....+....+.+.+.+.. .+....++|..|.+.|..+.++...........++.+...+..+.+|+..+.
T Consensus 130 ~~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~ 200 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY 200 (599)
T ss_pred cHHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence 1223344444444443322 2334446899999999887776654444444455555555544445554333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=79.38 Aligned_cols=171 Identities=14% Similarity=0.121 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 010433 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 104 (511)
..|.+.+...+-++..+...++ +|.+..|- |+|..+.|++.+...+.....++..-
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~W------LP~ili~~------------------G~sa~~aG~llsl~~l~~~~~~ll~P 264 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGW------LPAILIDR------------------GLSAAEAGSLLSLMQLAQLPTALLIP 264 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHH------HHHHHHHc------------------CCCHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3456665555555555555555 46666655 89999999999999999999999999
Q ss_pred hhhhhc-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCC-CchhHHHHHHHHH
Q 010433 105 YVTRSR-GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKI-RGAVNQLFQLTTC 182 (511)
Q Consensus 105 ~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~ 182 (511)
.+++|. ++|+..+....++.++.+.+.+.+.-..+.. -++.|+|.|..++.+..++.+..+..+ -++..+..+....
T Consensus 265 ~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GY 343 (395)
T COG2807 265 LLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGY 343 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhH
Confidence 999965 6777778888888888887778765444443 499999999999999999999886444 3455566666666
Q ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHh
Q 010433 183 LGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (511)
Q Consensus 183 ~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (511)
+=..+||.+.+.+.+..+ +|+...+..+...++..+.-
T Consensus 344 llAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 344 LLAAFGPWLFGFLHDATG-SWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HHHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHHHHH
Confidence 666778888666666554 89998888777777665543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=90.74 Aligned_cols=150 Identities=12% Similarity=0.029 Sum_probs=117.0
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHH
Q 010433 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----------VHISMLLLGRIFL 146 (511)
Q Consensus 77 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----------~~~~~l~~~r~l~ 146 (511)
..|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+...+. ++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 358899999999999999999999999999999999999999999999887654311 3444566678899
Q ss_pred HhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCC-----ccchHHHHH-HHHHHHHHHHH
Q 010433 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-----WGWRLSLGL-ATVPATLMFVG 220 (511)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~-----~~wr~~f~~-~~~~~~~~~~~ 220 (511)
+++.+....+...++.+..|+++++...++..+..++|..+++.+++.+...-. ++.++..++ ..+..++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766554322 233333322 22333333333
Q ss_pred hccccC
Q 010433 221 GLFLPE 226 (511)
Q Consensus 221 ~~~~~e 226 (511)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 446785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-07 Score=90.11 Aligned_cols=148 Identities=13% Similarity=0.122 Sum_probs=106.6
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH
Q 010433 314 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 393 (511)
Q Consensus 314 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
+....+.....+..++..++..+|.++.|.++||+|||+.+..+.++..++.+..++. ...+..++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~ 177 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIF 177 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHH
Confidence 3455666777888899999999999999999999999999999988888777666554 223444555
Q ss_pred HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhc
Q 010433 394 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFF 473 (511)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
-++.+++.+.. ......+..|..+++.|+.+..+ ......++.+++...+.+.. +|........+..+..++.+++
T Consensus 178 Rfl~G~~~~~~-~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 178 RFLSGFFGSGP-LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHhhccch-hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 55555554433 34556677899999999999999 88888889999999988877 4444444433333333333444
Q ss_pred cccCC
Q 010433 474 LPETK 478 (511)
Q Consensus 474 ~~~~~ 478 (511)
.+|.+
T Consensus 254 ~~Es~ 258 (521)
T KOG0255|consen 254 PPESP 258 (521)
T ss_pred cCcCh
Confidence 54543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=85.90 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhhhhhhhhhHh
Q 010433 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC--AVHISMLLLGRIFLGMGIGFGNQAVPLYL 161 (511)
Q Consensus 84 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 161 (511)
..+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888889999999999999999998888766654443333 35677788888999999999999999999
Q ss_pred HhcCCC-------CCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010433 162 SEMAPA-------KIRGAVNQLFQLTTCLGILVANLINYGTE 196 (511)
Q Consensus 162 ~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~~~ 196 (511)
+|..+. ++.|...+.......+|..+|+.+++...
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998852 23356778888888899999888865543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.7e-07 Score=84.40 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=128.0
Q ss_pred HHHHhhhcchhhHHhcHHHHHH-HcC----CCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHhhhHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQ-SLG----FGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMV 366 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~ 366 (511)
..-+.--+++|++...+..|+. +.+ ++.+++...+..++...-+..+++||++||+ |+|+.+..+.+++.++.+
T Consensus 28 ~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~ 107 (498)
T COG3104 28 FVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL 107 (498)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4455566677777766666663 344 9999888888888877778889999999995 999999999999999988
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCcc--chhhHHHHHHHHHHHHHHHHHHHH
Q 010433 367 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE--MRSAGQSVVVCNNLLFTALIAQAF 444 (511)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~~ 444 (511)
++.... ........+.+.+...+.+ .+-+....++.|++|++ +|-.++++..+..++|+.++|.+.
T Consensus 108 ~L~~~~-----------~~~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~ 175 (498)
T COG3104 108 VLAISS-----------VSGPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT 175 (498)
T ss_pred HHhccc-----------cccccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence 887652 0112233344444445544 34455566678888764 366777888888899999999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHhcccc
Q 010433 445 LAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 476 (511)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (511)
+++.++.++...+..+++....+++.+...++
T Consensus 176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999888888888888888877766653
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.9e-07 Score=88.30 Aligned_cols=142 Identities=20% Similarity=0.156 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHH
Q 010433 322 AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAY 401 (511)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (511)
+.+++.+...++..++.++.|+++|++|||+.+..+.+...++.++..... ....+.+.-++.+.+.
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------------~~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------------SWYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHhccch
Confidence 347999999999999999999999999999999999999988888887763 2345556666666665
Q ss_pred hcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHHHHhccccCC
Q 010433 402 GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL--KFGIFLVFGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 402 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (511)
+... .+...+.+|+.|++.||...+..+....+|..++ .+.+...++. +|...+....+..+...+..++.||+.
T Consensus 157 G~~~-~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 157 GGAS-VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hhhh-hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 5444 3445677899999999999998888887655555 6666666543 566666555555555555566677653
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=76.71 Aligned_cols=323 Identities=11% Similarity=0.074 Sum_probs=191.8
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhH
Q 010433 95 AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (511)
Q Consensus 95 ~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 174 (511)
.+.+.-.+.=.+.|..--|++++.-.+.......+..+.++.+.+=+.-++.|...+ ...+-++++-+..+++++.++.
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHH
Confidence 344455555578898888999988888888888899999999999999999999766 4567888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHHHHHHHHHHHhCCCcch
Q 010433 175 QLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVD 254 (511)
Q Consensus 175 ~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (511)
+...++.-.|...|..++-.+...+..++...-.+......+..+...++|..+|.+..+++.++. ...+....+. +
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~--~v~~~e~~~~-~ 209 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI--SVGDLEEMNP-Q 209 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc--eeccchhcCc-c
Confidence 999999999999998888777777766777777776666666666677888776555444333321 1111111111 1
Q ss_pred HHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCCCC--hhHHHHHHHHHH
Q 010433 255 AEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGS--GAALYSSVITGI 332 (511)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~ 332 (511)
.+..+..+ ..-......+.+..+++.....- +.+.....+++-..+|...+-++..-.+ .-.|..=.+..+
T Consensus 210 ~~~~~~l~--~~~~~l~~~l~~~y~np~ll~WS-----lWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tl 282 (433)
T KOG3810|consen 210 ASYMSYLR--GAFVLLWRDLQECYSNPRLLKWS-----LWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTL 282 (433)
T ss_pred chhhHHHH--HHHHHHHHHHHHHhcCchhhhhH-----HHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHH
Confidence 11111000 00011112233344444322221 2344455566666667666666543111 123445556667
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccccee
Q 010433 333 ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 412 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (511)
.++++.+..|.+--++.|..-+.++......+.+++.... ....|.......++...+....+.....+
T Consensus 283 LGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~-----------t~~Iw~~Ya~yvlfr~~y~l~itiA~~~i 351 (433)
T KOG3810|consen 283 LGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ-----------TQHIWVCYAGYVLFRVIYQLTITIATFQI 351 (433)
T ss_pred HHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc-----------ccceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence 7778888888887666655333333222222222222211 12245555666666666555444333334
Q ss_pred ecccCCccchhhHHHHHHHHHHHHHHHH
Q 010433 413 PSELFPLEMRSAGQSVVVCNNLLFTALI 440 (511)
Q Consensus 413 ~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 440 (511)
++....+.-|...|+..++.-+...+.
T Consensus 352 -A~nL~~e~~gLvFGiNTFvAl~lQsil 378 (433)
T KOG3810|consen 352 -ARNLSSELFGLVFGINTFVALILQSIL 378 (433)
T ss_pred -HHhhhhhhheeeeehHHHHHHHHHHhh
Confidence 344456667777777666555444433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=74.18 Aligned_cols=136 Identities=10% Similarity=-0.107 Sum_probs=103.1
Q ss_pred hhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
.......|.+.+.++.+..++++.......+..+..+..+++.+|+|+|+-+..+..++++++.++.-....
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-------- 101 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-------- 101 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh--------
Confidence 334456788778899999999999999999999999999999999999999999999999998888654311
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 449 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 449 (511)
......+...++.+.+.+..- .....++..+.|++..+.-+.+.+.+..+|+.++|.+.+.+..
T Consensus 102 --~~y~~FL~~lFila~Gi~~Le-taaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 102 --KSYGFFLVALFILASGIGLLE-TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred --hhHHHHHHHHHHHHhhhHHHH-hccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 112223333333333333222 2334555677888778888899999999999999999998876
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.5e-06 Score=67.45 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHh
Q 010433 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (511)
Q Consensus 84 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 163 (511)
.--.-.++.+....+++++...+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-++.|++.+..++..-.++.+
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~ 116 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTS 116 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence 3344455666677888888899999999999999999988865444 356778899999999999999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010433 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (511)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~ 196 (511)
..++++|++-.+++......+.++|.++..+..
T Consensus 117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 117 YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988855543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=61.35 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=65.2
Q ss_pred cchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q 010433 52 SMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA 131 (511)
Q Consensus 52 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 131 (511)
.+|.+++|. ++|.++.|++.+..++||.+|.+...++.++..+++.+..+++...+..+.++
T Consensus 14 lLP~M~~~~------------------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 14 LLPLMQADG------------------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HhHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 378888887 89999999999999999999999999999998889999999999999999999
Q ss_pred HhhHHHHHH
Q 010433 132 CAVHISMLL 140 (511)
Q Consensus 132 ~~~~~~~l~ 140 (511)
+.++++...
T Consensus 76 ~~~~~~~w~ 84 (85)
T PF06779_consen 76 LTHSFWLWS 84 (85)
T ss_pred HHhchHHHh
Confidence 998876653
|
Note that many members are hypothetical proteins. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.2e-05 Score=71.22 Aligned_cols=139 Identities=15% Similarity=0.061 Sum_probs=75.7
Q ss_pred HHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhh----
Q 010433 33 AAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR---- 108 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d---- 108 (511)
+.+-+++.|...+..... +|-+.++- .-++|.+|.+.+.-+ ...+ -.-++|.++.|
T Consensus 5 L~~LY~lQGiP~GL~~gs--iPflL~~~----------------~~~~sy~q~~~fSla-~~Pf-SlKlLWaPiVDs~y~ 64 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGS--IPFLLQSM----------------AKKVSYSQQAIFSLA-SYPF-SLKLLWAPIVDSVYS 64 (544)
T ss_pred HHHHHHHcCccccccccc--chhhhccc----------------cCCCChhHheeeeee-echh-HHHHhhhhhhhhhcc
Confidence 345578888888875222 46665541 005577776654321 1111 12345666655
Q ss_pred -hcchhHHHHH-HHHHHHHHHHHHHHhh------------------------HHHHHHHHHHHHHhhhhhhhhhhhhHhH
Q 010433 109 -SRGRRASIMV-GSVSFFIGAILNACAV------------------------HISMLLLGRIFLGMGIGFGNQAVPLYLS 162 (511)
Q Consensus 109 -r~Grr~~l~~-~~~l~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 162 (511)
|+||||.-++ .-.+.++..+..+..- +...+...-++.=+-++.--.+.-.+.-
T Consensus 65 ~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWAL 144 (544)
T PF13000_consen 65 KRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWAL 144 (544)
T ss_pred cccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhh
Confidence 8999987544 2233333333322211 0112222232333333444445556666
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010433 163 EMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (511)
Q Consensus 163 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 191 (511)
.+.++++++.|......+.+.|..++..+
T Consensus 145 T~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 145 TMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred hhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 77788999999888888888888887766
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-05 Score=73.02 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=119.6
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhh
Q 010433 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR-SRGRRASIMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMGIGF 152 (511)
Q Consensus 77 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~ 152 (511)
.+|++..+..-+.+....|..++....|++.. |.++|+...+++.+..++..+..++ .+.+.+...-++.|++.|.
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 34999999999999999999999999998888 6788888888888887777665444 6788999999999999999
Q ss_pred hhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccc--------CCccchHHHHHHHHHHHHHHHHh
Q 010433 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI--------HPWGWRLSLGLATVPATLMFVGG 221 (511)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~--------~~~~wr~~f~~~~~~~~~~~~~~ 221 (511)
......+.+.|..++++.|..+|.+.....++..++..+++...+. ...+|-.+|.+.++..++.+.+.
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888887655432 22467777877777666654443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-06 Score=81.52 Aligned_cols=161 Identities=14% Similarity=0.042 Sum_probs=105.2
Q ss_pred HHHHHH--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 010433 310 PVIFQS--LGFGSGAALYSSVITGIALCIAALISMAFVDKFGR-RAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 386 (511)
Q Consensus 310 ~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
-.|+++ .+-+.+..|+..+...++.+++.+..++...|.++ |+.++.+.++++++.++....... +...
T Consensus 58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~ 129 (488)
T KOG2325|consen 58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGV 129 (488)
T ss_pred chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccch
Confidence 345555 66677788999999999999999999999999885 788889999999998888555432 2224
Q ss_pred hHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---h---------cc-h
Q 010433 387 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC---H---------LK-F 453 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~-~ 453 (511)
.++.++.-.+.+.+. +.....-.|+++..-.+.|.++++..+....++..+||.+-..+.. . .+ +
T Consensus 130 ~y~mL~~R~l~Gvg~--~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~Y 207 (488)
T KOG2325|consen 130 KYLMLVARILTGVGV--GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMY 207 (488)
T ss_pred HHHHHHHHHHcCcCc--ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEec
Confidence 455555555555443 3334456677776667778888887777666666666655443321 1 00 2
Q ss_pred h-hHHHHHHHHHHHHHHHHhccccCCCC
Q 010433 454 G-IFLVFGGLVVIMSAFIYFFLPETKQV 480 (511)
Q Consensus 454 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (511)
. ..++.+.+.++..++...+.+|..+.
T Consensus 208 Tap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 208 TAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred chHHHHHHHHHHHHHHHHHhheeecccC
Confidence 2 34444555555555566666765543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-05 Score=76.86 Aligned_cols=142 Identities=14% Similarity=0.082 Sum_probs=89.0
Q ss_pred chhhHHhcHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHh-hhHHHHHHHHHHHHHHHh
Q 010433 301 GMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDK----FGRRAFFLE-AGTEMIIYMVIVAITLAL 374 (511)
Q Consensus 301 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 374 (511)
.+.....|+.+++. ..|+++..+|.+..+.-+...+.-++.|+++|| +|||+..+. +.+.++++..++...
T Consensus 24 ~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~--- 100 (460)
T PRK11462 24 IFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST--- 100 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC---
Confidence 34445556666664 489999999999999999999999999999997 577766553 434444443332211
Q ss_pred hcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 375 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-LEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
++ ...........+..+++..++.....|- .++..|+.+ +++|.+..+.-.....+|+.+++.+...+...
T Consensus 101 ---p~-~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 101 ---PD-LSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred ---CC-CCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011112223333334444444333333 344567665 67899999998888888887777776655543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.6e-06 Score=76.59 Aligned_cols=111 Identities=22% Similarity=0.260 Sum_probs=76.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHH
Q 010433 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLF 397 (511)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (511)
+++...+.+.....++.++|++..|++.||+|||++.....+++.++.++..+.. ..+.+....+.+...-.++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~------~~~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV------GTTSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC------CCCCCcchhhHHHHHHHHh
Confidence 5666778889999999999999999999999999988877777776666433321 1111112233334444555
Q ss_pred HHHHhcccccccceeecccCCccchhhHHHHHHHHHHH
Q 010433 398 VLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL 435 (511)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 435 (511)
+++.+.=+ |+..++.+|....+.||.-.+.+...+..
T Consensus 155 GiGIGGDY-PlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 155 GIGIGGDY-PLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred hccccCCC-cchHHHhhhhhhhccccceeEEEEEecch
Confidence 55555334 66677889999999999877776544443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.2e-09 Score=101.95 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHH
Q 010433 322 AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAY 401 (511)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (511)
..+...+...++.++|.++.|++.||+|||+.+..+..+..++.++..+... ....+...+.-.+.+.+.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS----------YNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccc
Confidence 4577888899999999999999999999999999888888777777666520 012344445555666665
Q ss_pred hcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh---cchhhHHHHHHHHHHHHHHHHhccccC
Q 010433 402 GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH---LKFGIFLVFGGLVVIMSAFIYFFLPET 477 (511)
Q Consensus 402 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
+... +....+..|..|++.|+...++.+....+|..++..+.-...+. ..|.....+..+..+...+...++||+
T Consensus 117 g~~~-~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 117 GGAY-VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5444 44466778999999999998888877777666655554333222 235555555555554555555667765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.8e-06 Score=80.11 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=107.9
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH
Q 010433 314 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 393 (511)
Q Consensus 314 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
++.+....+.+...+.+.++.+++.+.++.+.||++-.+.+....++..+..++.... +..+..++.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ial 140 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIAL 140 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHH
Confidence 3456777788999999999999999999999999995544443322222211111111 233556677
Q ss_pred HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------hcchhh-HHHHHHHHHHH
Q 010433 394 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC------HLKFGI-FLVFGGLVVIM 466 (511)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~ 466 (511)
-++.+..-+.++++. ..+++..+.+++|+.-+|+.+....+|+++++.+...+.+ ..||.. +++-+++.++.
T Consensus 141 r~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 141 RFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 777888877777666 4555799999999999999999999999999999888643 224544 55556666667
Q ss_pred HHHHHhccccCCC
Q 010433 467 SAFIYFFLPETKQ 479 (511)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (511)
++++++++|+...
T Consensus 220 gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 220 GIVVFFFLPDNPS 232 (495)
T ss_pred HheEEEEecCChh
Confidence 7777778876554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=69.89 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=92.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQA 156 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 156 (511)
|.+..+..+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.+++.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 44556667777778888888899999999999999999999999999999988876 7888899999999999999999
Q ss_pred hhhHhHhcCC-------CCCCchhHHHHHHHHHHHHHHHHHH
Q 010433 157 VPLYLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLI 191 (511)
Q Consensus 157 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l 191 (511)
..++++|..+ .+.-|...+......=+|.+++..+
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999987764 2233566666666666677766654
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0031 Score=61.64 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=78.2
Q ss_pred CchHHHHHHHHHHH-HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh---------h----------------
Q 010433 81 DNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---------V---------------- 134 (511)
Q Consensus 81 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---------~---------------- 134 (511)
+++.+..+-....+ ...+...+..++++|++|.+++-..+..+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56667777665555 446678889999999999999887776666666555552 0
Q ss_pred ------HHHHHHHHHHHHHhhhhhhhh-hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010433 135 ------HISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK 197 (511)
Q Consensus 135 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~ 197 (511)
+.|.+.+.-++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+......
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222222222 346677899999999999999999999999998887544444
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.6e-06 Score=79.77 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=120.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+-.+...|........+-.+.-++.+++..++|+-+++.+++.+..+=.+..+..+|.|..+-..+++|+..+..+.+..
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 34555666666677777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHHHH-HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhc
Q 010433 159 LYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (511)
+|++...||+-|..+-++.+. ..++|--+|.++|+... ..++=|..|.+.++.+++.+++..
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v--~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV--ERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh--eeehhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754 56778888888854443 346788999999888887765543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00016 Score=66.11 Aligned_cols=154 Identities=15% Similarity=0.041 Sum_probs=89.4
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHH
Q 010433 312 IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 391 (511)
Q Consensus 312 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
.++++|++..+++.++....+...+...+.|.+.||+|||+.-+...++..++++.-.. +....++
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------------~~~~~L~ 125 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------------SNYPVLL 125 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------------cccHHHH
Confidence 34679999999999999999999999999999999999998766555555554432211 2223344
Q ss_pred HHHHHHHHHHhcccccccceeeccc----CCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcch--hhHHHHHHHHH
Q 010433 392 IVICLFVLAYGRSWGPLGWLVPSEL----FPLEMRSAGQSVVVCN-NLLFTALIAQAFLAALCHLKF--GIFLVFGGLVV 464 (511)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 464 (511)
+.-++.+....+.+...-.-++.|. +|++..+...+..... +.+..+.+..+...+.+..+. ..++..+..++
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l 205 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL 205 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 4445555554444443322233443 3545445555544423 333444445555555665543 44555555555
Q ss_pred HHHHHHH-hccccCCC
Q 010433 465 IMSAFIY-FFLPETKQ 479 (511)
Q Consensus 465 ~~~~~~~-~~~~~~~~ 479 (511)
+++.+.. ..-+|+.+
T Consensus 206 ~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 206 AVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHhcccccCC
Confidence 4444433 33445443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=54.89 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=56.2
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhh
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 358 (511)
.++..+.+...+.-|.|.++++.|+++.++|.+..+..+..+++.++.|.++||.++++......
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 35555666677888999999999999999999999999999999999999999999998766443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=69.21 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccc
Q 010433 330 TGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLG 409 (511)
Q Consensus 330 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (511)
.++..++.+...|.++|++|||..+......+.+....+.+.. |+.++... ...++. ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------------~~~~~~~~-l~g~~~-~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------------YWFFLLLG-LSGGFS-AIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------------HHHhhhcc-cccchh-hhhhhh
Confidence 3678888999999999999999998888777776666655542 22222111 112222 222344
Q ss_pred ceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHhccccCCCCCH
Q 010433 410 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV-IMSAFIYFFLPETKQVPI 482 (511)
Q Consensus 410 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 482 (511)
..++++....+.|....|+.+.....+..++|.+.+......+....+.++.... +.......++||+..++.
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 6677899999999999999999999999999999999988887665555544444 444445566777665443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.003 Score=63.16 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=107.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHhhH----------------------
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAVH---------------------- 135 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~---------------------- 135 (511)
|.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..++..+..++..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 66677777888888888888999999999975 9999999999988888665544321
Q ss_pred ---HHHHHHHHHHHHhhhhhhhhhhhhHhHhcCC---CCC---CchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHH
Q 010433 136 ---ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAP---AKI---RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLS 206 (511)
Q Consensus 136 ---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~ 206 (511)
...+..+.-+..+|.|+.-|...++-+|-++ +++ +..-+.++....++|..++..+ ....-+..+|.+-
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~--~vyiq~~~~w~lg 226 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV--LVYIQDNVGWKLG 226 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH--HHhhhhcccceee
Confidence 1356667778888999999999999999998 322 2366778888889999888877 4444345689999
Q ss_pred HHHHHHHHHHHHHHh
Q 010433 207 LGLATVPATLMFVGG 221 (511)
Q Consensus 207 f~~~~~~~~~~~~~~ 221 (511)
|.+..+..+++++++
T Consensus 227 f~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 227 FGIPTVLNALAILIF 241 (571)
T ss_pred ccHHHHHHHHHHHHH
Confidence 988877766655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.024 Score=54.16 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=81.5
Q ss_pred CchHHHHHHHHHHH-HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh---------hH---------------
Q 010433 81 DNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---------VH--------------- 135 (511)
Q Consensus 81 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---------~~--------------- 135 (511)
++..+..+-+..-+ +..+..++.+++.+++.|.+++-.-+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 56778888888888 678899999999999999999888777777777777663 11
Q ss_pred --------HHHHHHHHHHHHhhhhhhhh-hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010433 136 --------ISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK 197 (511)
Q Consensus 136 --------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~ 197 (511)
.|...+.-.+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+......
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 02222221211121222222 334556788888888999999999999999999888555543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00078 Score=65.23 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc--ccCC--ccch--HHHH
Q 010433 135 HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE--KIHP--WGWR--LSLG 208 (511)
Q Consensus 135 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~--~~~~--~~wr--~~f~ 208 (511)
.++..++.-++.|++.+........+.+ .+|++ .+..+..+.+++.+++.++..... ..+. ..++ ..|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 5677777888999999988888888776 55543 455556666666666555422111 1110 1122 3334
Q ss_pred HHHHHHHHHHHHhccccCChh
Q 010433 209 LATVPATLMFVGGLFLPETPN 229 (511)
Q Consensus 209 ~~~~~~~~~~~~~~~~~esp~ 229 (511)
+..++.+++++....++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 444444444555555666663
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00035 Score=66.96 Aligned_cols=107 Identities=17% Similarity=0.366 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCC---CCchhHHHHHHHH
Q 010433 114 ASIMVGSVSFFIGAILNACAV---------HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK---IRGAVNQLFQLTT 181 (511)
Q Consensus 114 ~~l~~~~~l~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 181 (511)
|+++++.++..+|.++..++. +.+.++++.++.++|.|+.-|...++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888899999998855552 2367899999999999999999999999999865 3556778889999
Q ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhc
Q 010433 182 CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (511)
Q Consensus 182 ~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (511)
++|..++..+. ....++.+|.+.|.+.++..++.++.++
T Consensus 82 n~G~~~~~~~~--~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLV--PYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCC--CHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccc--hhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 99999998873 3333456999999999888877665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.4e-05 Score=51.87 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=40.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF 123 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~ 123 (511)
|+|..++|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 899999999999999999999999999999999998877655543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0025 Score=64.97 Aligned_cols=141 Identities=12% Similarity=0.022 Sum_probs=91.3
Q ss_pred hHHhcHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 010433 304 SILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 381 (511)
Q Consensus 304 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (511)
++...+..|+ +.+|++...+..+........-+..+++++++|+ +|+++.+..+.++..++..++.+.... . .
T Consensus 5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~----~-~ 79 (654)
T TIGR00926 5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP----S-S 79 (654)
T ss_pred ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc----c-c
Confidence 3333344444 4589988888877777777777788899999997 599999988888888877666553210 0 0
Q ss_pred CCcchhHHHHHHHHHHHHHHhcccccccceeecccCCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 382 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE---MRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
.........+..+.+...+.+..- +.......|.++++ .+.....+.....++|+.+++.+.+.+.+.
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiK-p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIK-PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccc-cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001111223344444445544333 33344556777643 366778888888999999999999988754
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.017 Score=54.14 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhhhhhhh
Q 010433 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---------VHISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 85 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~ 155 (511)
....+....+...+....-.++.-|. |+++.....+...+....+.++ ..++..++.-.+.|.+.|....
T Consensus 58 ~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qg 136 (406)
T KOG1479|consen 58 TSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQG 136 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhcc
Confidence 34444444455556666666666662 2222222222222222222222 3466777777888888888777
Q ss_pred hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHh---hcccCCccchHHHHHHHHHHHHHHHHhccccCCh
Q 010433 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYG---TEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (511)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~---~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 228 (511)
......++ +|++.-. -+..+.+++.++..++.-. .......+=..-|.+..++.+++.++...+|..|
T Consensus 137 s~~G~a~~-~P~~ytq----avm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 137 SLYGLAGL-FPSEYTQ----AVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred chhhhhhc-CCHHHHH----HHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcch
Confidence 77776665 4544422 2233444444444333111 1111112333444555555555555555667666
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.58 E-value=1.1e-05 Score=80.25 Aligned_cols=153 Identities=12% Similarity=-0.049 Sum_probs=1.0
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 373 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
..+.+......+...++.+-++++++..++|++.+..-++.++..++..++.+|..|-+.+..+.++++++.+++.+...
T Consensus 11 ~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf 90 (539)
T PF03137_consen 11 LGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHF 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHh
Confidence 34444443333444555555679999999999999999999999999999999988888888899999999888877654
Q ss_pred hhcCC--CC-------------------------------CCCcchh----HHHHHHHHHHHHHHhcccccccceeeccc
Q 010433 374 LEFGE--GK-------------------------------PLPKGIG----IFLVIVICLFVLAYGRSWGPLGWLVPSEL 416 (511)
Q Consensus 374 ~~~~~--~~-------------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (511)
..-.. .. ....... ++.++..++.+.+.. ...++..+|+-|.
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~-pl~tLG~tYiDDn 169 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT-PLYTLGITYIDDN 169 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc-CCccceeeeeccc
Confidence 32111 00 0001111 222222233333322 2345778888999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 417 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 447 (511)
Q Consensus 417 ~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (511)
.+++..+...|+......+|..+|-.+.+..
T Consensus 170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 170 VSKKNSPLYIGILYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp -------------------------------
T ss_pred cccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence 9999999999998888877776665555533
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0021 Score=60.31 Aligned_cols=127 Identities=20% Similarity=0.046 Sum_probs=83.5
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhH--HHHHH
Q 010433 316 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI--FLVIV 393 (511)
Q Consensus 316 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 393 (511)
+| +...+-+...++.+..++..+.+.|+.||+|-|....++..+.+++..+=..... +..++..+ +....
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-------p~v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-------PFVPPLFRRPLTHTG 146 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-------ccccccchhhhhHHh
Confidence 55 5666778888999999999999999999999999999888888777666544421 00112222 22222
Q ss_pred HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010433 394 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 451 (511)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 451 (511)
..+..... .....++.-+..--+|+++|+.+..+..+.+.+|..++..+-..+..+.
T Consensus 147 q~iaa~Aq-~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 147 QSIAAAAQ-PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHHHhh-hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 22222221 1112222333345689999999999998888888888777766665443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=65.88 Aligned_cols=189 Identities=13% Similarity=0.029 Sum_probs=120.3
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+..+.+......+...+..+-++++++..+.|++....-++..+......+...|..|-+.+-++.++++++.++..+..
T Consensus 104 ~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPH 183 (735)
T KOG3626|consen 104 LAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPH 183 (735)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChH
Confidence 44555544444344444444456899999999999999999999999999999999998999999999999988887764
Q ss_pred Hhhc-----------CCCCC---------------------------CCcchhHHHHHHH-HHHHHHHhcccccccceee
Q 010433 373 ALEF-----------GEGKP---------------------------LPKGIGIFLVIVI-CLFVLAYGRSWGPLGWLVP 413 (511)
Q Consensus 373 ~~~~-----------~~~~~---------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 413 (511)
...- ....+ ......++++.+. ++.+.+ .....++...|+
T Consensus 184 f~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG-~Tpi~tlGisYi 262 (735)
T KOG3626|consen 184 FFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG-ATPIFTLGISYI 262 (735)
T ss_pred HhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC-CCCCccCCCccc
Confidence 3310 00000 0001123222222 223333 333446778888
Q ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cc-hhhHHHHHHHHHHHHHHHHhcc
Q 010433 414 SELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH------------------LK-FGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 414 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
.|...++......|+...+..+|-++|-.+.+..... .| |+.-+++.+.+.+...+.+++.
T Consensus 263 DDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 263 DDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF 342 (735)
T ss_pred cccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888889999999888888777776666654431 11 3333444555555555666677
Q ss_pred ccCCCCCH
Q 010433 475 PETKQVPI 482 (511)
Q Consensus 475 ~~~~~~~~ 482 (511)
|++.++..
T Consensus 343 Pk~lp~~~ 350 (735)
T KOG3626|consen 343 PKELPKSQ 350 (735)
T ss_pred cccCcccc
Confidence 76655443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0037 Score=54.43 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=37.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHHhcc
Q 010433 168 KIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLSLGLATVPATLMFVGGLF 223 (511)
Q Consensus 168 ~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (511)
|+|+....+...+.++|.++.... +... .....|++++.+.+++.++-+++...
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888899999877655 3222 11146999999888877665555433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.043 Score=54.72 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=70.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHH--HH-HHHHHH----HHhhHH-HHHHHHHHHHHhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVS--FF-IGAILN----ACAVHI-SMLLLGRIFLGMGI 150 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l--~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~~ 150 (511)
|-+..+.+.+.+++.+|.++|+.+++++.++.-|+.. ..-+.+ .+ ++..+. ++...+ ..++..-++.|+..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999988754333322 221111 11 111111 111111 22334456678888
Q ss_pred hhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 010433 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195 (511)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~ 195 (511)
|+..|....+..+... ++-++..|.......+|.++|.++.++.
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 8888887777765432 2345667777888888888888775443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.014 Score=55.21 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=80.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHH--HH---HHHHHHHHhhHHHHHHHHHHHHHhhhhhhhh
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVS--FF---IGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l--~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 155 (511)
..++..+...+|.+|..++.--...+ |+ |++.+.+.+- .. +.....-+.++.|..++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 35677888888888877765432221 33 3333332222 12 2222334568899999999999999999999
Q ss_pred hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 010433 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYG 194 (511)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 194 (511)
-....+.|-.++++|..+++....+.++|.+++.+++..
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.021 Score=54.97 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=94.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh------h----HHHHHHHHHHHHHh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------V----HISMLLLGRIFLGM 148 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------~----~~~~l~~~r~l~G~ 148 (511)
|+++..+|.+-+...+....+.....++.+|+|..|.=.+++.....+..++..+ + +...++.+-.+.-+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999988888877666555444332 1 23344444444445
Q ss_pred hhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Q 010433 149 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGW 203 (511)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~w 203 (511)
|-=+.-....-++.|..|+++||...|......++-.++...++.....-+.++|
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~ 423 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW 423 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence 5556677788889999999999999999999999988888877443333333333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=57.62 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-----CChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010433 309 APVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF-----GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 383 (511)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
.|.+.+++|.++.+.........+... ..++.|.++|-+ +||..+.++.++..++.+.+..... .
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---------~ 82 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---------S 82 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---------c
Confidence 344456799999988887777666554 457899999986 3555555555555444444433311 0
Q ss_pred cchhHHHHHHHHHHHHHHhcccccccceeecccC---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 010433 384 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF---PLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFG 460 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (511)
........+.+.+...+....- ...-..+.|.. |.+ ++...+.......+|+.++..+.|.+.+..++...+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~D-V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFAD-VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 0111222222233333322221 12222334444 444 788888888889999999999999998887755444443
Q ss_pred HHH-HHHHHHHHhcccc
Q 010433 461 GLV-VIMSAFIYFFLPE 476 (511)
Q Consensus 461 ~~~-~~~~~~~~~~~~~ 476 (511)
... .+..+......+|
T Consensus 161 ~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 333 3333334444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0096 Score=42.21 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=59.4
Q ss_pred hhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHH
Q 010433 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 371 (511)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (511)
+.++-.+|...++.++|..+.+++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899899999999999999999999999999999999998888888888877777777766665
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.041 Score=44.69 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 010433 325 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRS 404 (511)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (511)
.-..+......+..++.+.+.+++|.|+.+.++.+...+-...... ...+..+....+.+.+.+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------------~~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------------PNSYTLYPASALLGFGAALL 106 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHhhhhHHh
Confidence 3445555666777788899999999999988877665544333222 22455666777778887777
Q ss_pred cccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 405 WGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 447 (511)
Q Consensus 405 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (511)
|..-.. ++.+...++.+++-.++.-.+.+.+..+|..+.-.+
T Consensus 107 W~aqg~-ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 107 WTAQGT-YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHhhhH-HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766533 445777888889888888777777666666555443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.055 Score=52.79 Aligned_cols=128 Identities=9% Similarity=0.047 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCC----------CCCcch---
Q 010433 321 GAALYSSVITGIALCIA-ALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK----------PLPKGI--- 386 (511)
Q Consensus 321 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--- 386 (511)
+...++.....+...+. .++.+++++|++|++.+..........++++.+........-. ..+.+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45555555444444444 7788999999999998876665555555444444321100000 000000
Q ss_pred -----hHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 387 -----GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 387 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
.|.........-.......+-+.|.+++|.+..++..+-.++....++++..+++.+...+.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111112222256778899999999999999999999999999999888766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.097 Score=49.69 Aligned_cols=156 Identities=11% Similarity=0.014 Sum_probs=91.2
Q ss_pred cHHHHHHH-cCCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010433 308 YAPVIFQS-LGFGSGAALYSSVITG-IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 385 (511)
Q Consensus 308 ~~~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
..|++... .|++..+..--..+.. -..++..+....+.|.++.|+.++...+...+...++.+..
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~------------- 92 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT------------- 92 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-------------
Confidence 34444443 7888777654333333 34555666778899999999998887777666666655542
Q ss_pred hhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHH
Q 010433 386 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK--FGIFLVFGGLV 463 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 463 (511)
..+..-+.-++++...+.- ...+.++=...|+++--++.+........|..++..+...+....+ +.....+....
T Consensus 93 sv~~mq~~q~~yg~~~a~e--vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~ 170 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAAE--VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS 170 (412)
T ss_pred cHHHHHHHHHHHHHHHHHH--HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1122233333333333221 2222333345577766777888888877877777777776665333 44444555555
Q ss_pred HHHHHHHHhccccCC
Q 010433 464 VIMSAFIYFFLPETK 478 (511)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (511)
..++.+..+++|..+
T Consensus 171 ~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 171 VSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHcCCCC
Confidence 555666666777644
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.16 Score=49.09 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhhhhhhh---hcchhHHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHH
Q 010433 89 TSSLYFAGLVSTFGASYVTR---SRGRRASIMVGSVSFFIGAILNACA------------------VHISMLLLGRIFLG 147 (511)
Q Consensus 89 ~s~~~l~~~i~~~~~g~l~d---r~Grr~~l~~~~~l~~~~~~~~~~~------------------~~~~~l~~~r~l~G 147 (511)
.-...++..+++.+.+.+++ ++||++.+.++.++..++.++..+. +++...++.-+++|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 33444555666666777775 5799999999999888888777653 24667788889999
Q ss_pred hhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010433 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (511)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 191 (511)
++.+......+.++.+.. +++|..+.++...-..++..++...
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999 6888999999888888877776554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00057 Score=63.33 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 010433 325 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRS 404 (511)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (511)
..+..+.++..+|+.+..+..-+..+++.+....+.-.+..-++......+..+..+..-...+..++.+.+++...+ .
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG-y 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG-Y 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-h
Confidence 356678899999999888643221123323222222211111111111110000000111233444444555554433 3
Q ss_pred cccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 010433 405 WGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIA 441 (511)
Q Consensus 405 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 441 (511)
...+...+..+..+++.|..+-.+....-.+|-.+|.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs 301 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS 301 (309)
T ss_dssp --HHHH-------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777665555555554444443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.4 Score=45.31 Aligned_cols=178 Identities=16% Similarity=0.127 Sum_probs=75.9
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
+.........+.+.+-.+++.+++-.+.. +..+.....+.+.+..++...+--+...|.....+..+.....+......
T Consensus 25 llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~ 103 (406)
T KOG1479|consen 25 LLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLD 103 (406)
T ss_pred HHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777766432222 34444444555555555554444444333222333333333222222221
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL- 451 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~- 451 (511)
..... .+.......+..++.....+.+.+...+.+ +... ..+|++.....++-.+..+.+.+ +.-.+.....+..
T Consensus 104 ~~~v~-~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~-~G~a-~~~P~~ytqavm~G~a~aG~l~S-l~~i~tka~~~~~~ 179 (406)
T KOG1479|consen 104 LALVK-TDTWTNGFFLVTLIIVVLLNLANAVVQGSL-YGLA-GLFPSEYTQAVMSGQALAGTLTS-LLRILTKAAFSDSR 179 (406)
T ss_pred HHhhc-cCCccchhHHHHHHHHHHHhhhhhhhccch-hhhh-hcCCHHHHHHHHhcchhHhHHHH-HHHHHHHHhcCCCC
Confidence 11111 222222233334444444444444333333 5553 55677755443332222222211 2222222222222
Q ss_pred -chhhHHHHHHHHHHHHHHHHhccc
Q 010433 452 -KFGIFLVFGGLVVIMSAFIYFFLP 475 (511)
Q Consensus 452 -~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
+-..++..+.+..+++++++..++
T Consensus 180 ~sA~~yF~~s~~~~llC~i~y~~l~ 204 (406)
T KOG1479|consen 180 TSALIYFITSTVILLLCFVLYLVLP 204 (406)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHhh
Confidence 233455666666666666666444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0038 Score=58.73 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=94.0
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHhh-hHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDK----FGRRAFFLEA-GTEMIIYMVI 367 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~-~~~~~~~~~~ 367 (511)
+....++ ++..-..|.|.++++.|.+..-.+.......+.+++.+++.|..+|| +||||..+.. .....+++++
T Consensus 40 ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~L 118 (498)
T KOG0637|consen 40 IAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFL 118 (498)
T ss_pred HHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhh
Confidence 3344443 34556778888899999998888888888888999999999999996 6788776654 4445566666
Q ss_pred HHHHHHhhcCCCCCCCc-ch---hHHHHHHHHHHHHHHhcccccccceeecccCCccchhh-HHHHHHHHHHHHHHHHHH
Q 010433 368 VAITLALEFGEGKPLPK-GI---GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSA-GQSVVVCNNLLFTALIAQ 442 (511)
Q Consensus 368 ~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~~~~~~~~ 442 (511)
+.....+...-.++... .. ....++.+.+.-+.......|. -++..|+...+.+.+ +.+.......+|+.++-.
T Consensus 119 ig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~ 197 (498)
T KOG0637|consen 119 IGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMAVGNVLGYA 197 (498)
T ss_pred hhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHHhcceeeee
Confidence 66555443322222222 11 1222222333334433444454 445567776666666 888888888877766644
Q ss_pred HHH
Q 010433 443 AFL 445 (511)
Q Consensus 443 ~~~ 445 (511)
..+
T Consensus 198 ~g~ 200 (498)
T KOG0637|consen 198 LGS 200 (498)
T ss_pred ccc
Confidence 443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.45 Score=43.69 Aligned_cols=134 Identities=19% Similarity=0.134 Sum_probs=79.7
Q ss_pred HHhcHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 010433 305 ILFYAPVIFQSLGFGS--GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382 (511)
Q Consensus 305 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
.....+.+..+.+.+. ...+.......+...++.+..|.+.||.|||+....+......+.+......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 90 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---------- 90 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----------
Confidence 3445566666665555 4678888888888888889999999999999766665544233322222211
Q ss_pred CcchhHHHHHHHHHHHHHHhcccccccceeecccCCc-cchhhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 010433 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-EMRSAGQSVVVC-NNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 450 (511)
....+.........+.+.+ ...+....+..|..|+ +.|+...+.... ....+..+++.+.+.+...
T Consensus 91 -~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 91 -NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred -cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222222232333333 2334445666788887 567888887777 4666667777555555444
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.1 Score=39.13 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcC
Q 010433 94 FAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 165 (511)
Q Consensus 94 l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 165 (511)
+.....+++.+.+..++|-|.++.++...+... +..-+-+.+..++-.-.+.|++.+..+..--+++++.-
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 344555555568999999999999888877653 22334577889999999999999999988877776654
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.84 Score=44.25 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHhhhcchhhHHhcHHHHHHH--cCCCChhHHHHHH---HHHHHHHHHHHHHHHHHhhcCChhHHHhhh
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQS--LGFGSGAALYSSV---ITGIALCIAALISMAFVDKFGRRAFFLEAG 358 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 358 (511)
+.++.+..-......-.|.++++ .+.+-++.+.+.. ++.+=-+=+.++=.....|+||||..++-.
T Consensus 7 ~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~ 77 (544)
T PF13000_consen 7 LLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI 77 (544)
T ss_pred HHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence 34555555544444467888877 5666565544322 222222222223344556899998776543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=4.2 Score=40.82 Aligned_cols=145 Identities=16% Similarity=0.080 Sum_probs=66.3
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHH-HHhhcCCCCCCCcchhHHHHHH
Q 010433 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT-LALEFGEGKPLPKGIGIFLVIV 393 (511)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
-+|.+....+.+.+.+.++..+|+.+++++.++..++. ...-..+..++.+..... ....+ ...........
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~ll~~~~~~------~~~~~~~~~~~ 116 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALILYAAFAF------QGLSRLLLYVL 116 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 36777777777777877888888887777653322221 111111111111111000 00000 00111111222
Q ss_pred HHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcch-hhHHHHHHHHHHHHH
Q 010433 394 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-HLKF-GIFLVFGGLVVIMSA 468 (511)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 468 (511)
.+...+..+..+ |+..-+..+. ..+..+...|-.+....+|+.+|+.+.+.+.- ..|. ...++.+.+.+++++
T Consensus 117 ~~~~~~l~G~~~-Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 117 VLLIGLLIGMEI-PLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 222233333332 3322222121 11224556677788888899999988887653 5553 334444444444443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.47 E-value=2 Score=42.46 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhc--CCCC--------CCCcchhHH--------HHHHH
Q 010433 333 ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF--GEGK--------PLPKGIGIF--------LVIVI 394 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~--------~~~~~ 394 (511)
+.++..++-.++++++++.++.............++++..+-.. .+.+ ..++...+. ..+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 34455667889999999998777655555444444444332110 0000 011111111 11111
Q ss_pred HHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 395 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 449 (511)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 449 (511)
+..-.-.....+-+-|.+++|..+.++..+-.++....++++..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111112223457788999999999999999999999999999998887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.56 Score=44.96 Aligned_cols=119 Identities=6% Similarity=-0.073 Sum_probs=74.3
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCcc---chhhHHHH
Q 010433 352 AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE---MRSAGQSV 428 (511)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~ 428 (511)
+.+..+.++..++.+++.+....... ..........+.+.+...+.+..= |....+..|.++++ .|......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~----~~~~~~~~~~~gL~lia~G~G~~K-~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL----PSGIQLGLFYIGLALIAVGTGGIK-PNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHCCH-HHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh----hhhHHHHHHHHHHHHHHhcccccc-ccHHHHHHHHhcccchhhhhhhHHH
Confidence 45666777777777776555422111 001112344444555555555333 44455556777655 45667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccc
Q 010433 429 VVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLP 475 (511)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
.....++|..++..+.+++.++.++...+.+..++.+++++.+..-+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 88889999999999999999999988888888877777777665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.8 Score=42.28 Aligned_cols=109 Identities=8% Similarity=0.032 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchh-HHHHHHHHH---HHHHHHHHHH---------hhHHHHHHHHHHHHHhhhh
Q 010433 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRR-ASIMVGSVS---FFIGAILNAC---------AVHISMLLLGRIFLGMGIG 151 (511)
Q Consensus 85 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr-~~l~~~~~l---~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~ 151 (511)
.-.+..++.++-.+|..+..+.. .-++| +.+.+..++ +.-..++|.. -++-+..++..++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34566677777777777554331 11222 122222222 2222233322 2456777888999999999
Q ss_pred hhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 010433 152 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYG 194 (511)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 194 (511)
-....++.+..+..+++||..+..+...+..+|..+|..++..
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.19 E-value=13 Score=37.88 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=83.7
Q ss_pred cHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHhhhHHHHHHHHHHHHHHHhhcCCC-------
Q 010433 308 YAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVIVAITLALEFGEG------- 379 (511)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 379 (511)
...++...++.+...+.-.............+.+++++|.+ ||-+.+.++.++..+++.++...........
T Consensus 60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~ 139 (571)
T KOG1237|consen 60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKP 139 (571)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCC
Confidence 33344456777766666666666666777778899999985 8888888888888888777766655442211
Q ss_pred -C-CCCcchhHH-HHHH--HHHHHHHHhcccccccceeecccCCc----cch--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010433 380 -K-PLPKGIGIF-LVIV--ICLFVLAYGRSWGPLGWLVPSELFPL----EMR--SAGQSVVVCNNLLFTALIAQAFLAAL 448 (511)
Q Consensus 380 -~-~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 448 (511)
. .-+...... .+.. ..+...+.+ +.-+.....-+|.++. +.+ ..-+.......+.|..++..+..+.-
T Consensus 140 ~~~~c~~~s~~q~~~~~~~l~lia~G~g-g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 140 GGNVCESPSKLQLAVLYGALYLIALGAG-GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCcccCcchHHHHHHHHHHHHheeccC-CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 0 001111111 1111 222222222 3333334555677662 222 24555666667777777777777776
Q ss_pred Hhcchhh
Q 010433 449 CHLKFGI 455 (511)
Q Consensus 449 ~~~~~~~ 455 (511)
++.+|..
T Consensus 219 ~~~~w~l 225 (571)
T KOG1237|consen 219 DNVGWKL 225 (571)
T ss_pred hccccee
Confidence 6666543
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.27 Score=45.37 Aligned_cols=40 Identities=13% Similarity=-0.154 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 010433 91 SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN 130 (511)
Q Consensus 91 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~ 130 (511)
.-.....+..++.|...|+..|+|++...+.+.-++.+++
T Consensus 71 vesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~va 110 (503)
T KOG2601|consen 71 VESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVA 110 (503)
T ss_pred HHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHH
Confidence 3334556777888999999999999988776665544443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.06 E-value=3.1 Score=39.01 Aligned_cols=61 Identities=21% Similarity=0.179 Sum_probs=36.6
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHh-----hcCChhHHHh
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVD-----KFGRRAFFLE 356 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~ 356 (511)
+.+..+..-+.... -.|.+++.-|.|-++.+.......=- ---++...+.| |+||||..+.
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceee
Confidence 34555665555444 78999887777766555443322211 12345566667 9999987664
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.066 Score=47.83 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcC
Q 010433 86 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 165 (511)
Q Consensus 86 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 165 (511)
|.+.-+-.+...+-.+.+....||+---.=+.+..++.+.+.++.+++++.++-+.+-.+..++.|.....-..+-+.+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y- 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY- 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC-
Confidence 3344444555566666677788886433333455667788888899999999999998888888887776655554433
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hcccc
Q 010433 166 PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLP 225 (511)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~ 225 (511)
+ ....+.++.+.+.+.++|..--.++....+.+-|...++...+.++.+.. ++.++
T Consensus 144 ~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~ 200 (409)
T KOG3880|consen 144 P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK 200 (409)
T ss_pred C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence 2 23455566666666666665432333323346677777766655554444 44443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.33 E-value=10 Score=33.81 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchh--HHHHHHHHHHHHHHHHHHHh----h---HHHHHHHHHHHHHhhhhhhhh
Q 010433 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRR--ASIMVGSVSFFIGAILNACA----V---HISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 85 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~l~~~~~l~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~~~~~~ 155 (511)
.|.+.+.++++..+|+-+..++..|-..| ..+.+.....++...+..+. | +...-+++-.+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58899999999999999998888765444 45555555555544443332 1 122224455556677888999
Q ss_pred hhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH
Q 010433 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (511)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (511)
..+.+-+.+.|+++|...+.++..-.++=..++-.. .-......+-|..|-++.+...+..+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccccchhhhhhHHHHHHHHHH
Confidence 999999999999999999988776544433322111 001111245677787777766655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.51 E-value=30 Score=33.91 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcC--CCC---------CCCcch
Q 010433 319 GSGAALYSSVITGI-ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG--EGK---------PLPKGI 386 (511)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~ 386 (511)
++.....+-...-+ +.++..++..++.++..+.+............++++++...-... +.+ +.|...
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34444444444444 566677788889999998887776555555555555444321100 000 011110
Q ss_pred --------hHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010433 387 --------GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 450 (511)
Q Consensus 387 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (511)
.|.......+.-.-.....+-+-+..++|+...++..+-+++.+...+++..+++.+..++..+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1222222222111112222234466778999999999999999999999999999988887653
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.15 E-value=11 Score=34.83 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=59.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHH----HH-HHHh----hHHHHHHHHHHHHHhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGA----IL-NACA----VHISMLLLGRIFLGMG 149 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~----~~-~~~~----~~~~~l~~~r~l~G~~ 149 (511)
|-+--|.+.+.+.|.....+|+...-++.|.--.-+.+..-+++..++. ++ ..|+ ++-+.+.+.-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3366788999999999999999998888885433333322222222211 11 1333 5678888899999999
Q ss_pred hhhhhhhhhhHhHh
Q 010433 150 IGFGNQAVPLYLSE 163 (511)
Q Consensus 150 ~~~~~~~~~~~i~~ 163 (511)
.|...|..+.++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999998877
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.09 E-value=4.2 Score=36.88 Aligned_cols=104 Identities=12% Similarity=0.097 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 010433 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRA------SIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 84 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~------~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
|.-|....|.+|..+..- +-|+=+-+ ++..-.+++.+...+..+.++++..++.-+.-|+-.|..++-.
T Consensus 289 qYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNT 363 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNT 363 (409)
T ss_pred cchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHH
Confidence 467888888776544321 11221111 1222333444445566677999999999999998888888888
Q ss_pred hhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 010433 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 192 (511)
.--+.+-.++++|-.+++....+-++|..++.+++
T Consensus 364 f~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 364 FHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 87788888899999999999999999999998884
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=82.10 E-value=5.7 Score=38.26 Aligned_cols=15 Identities=7% Similarity=0.157 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhc
Q 010433 334 LCIAALISMAFVDKF 348 (511)
Q Consensus 334 ~~~~~~~~g~l~d~~ 348 (511)
.++.....|++..|.
T Consensus 8 ~i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 8 PIFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444555555554
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.84 E-value=3.2 Score=30.50 Aligned_cols=40 Identities=8% Similarity=-0.017 Sum_probs=30.7
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Q 010433 418 PLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFL 457 (511)
Q Consensus 418 p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (511)
.++.++.+.++-...-.+++.+....+|++.+++-...+|
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPw 75 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPW 75 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3456777888887888899999999999999987533333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 511 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-41 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 511 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 59/524 (11%), Positives = 127/524 (24%), Gaps = 180/524 (34%)
Query: 55 DFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR---G 111
FL R+ Y Q L+ F V+R +
Sbjct: 92 KFLMSPIKTEQRQP-----SMMTRMYIEQRDRLYND-------NQVFAKYNVSRLQPYLK 139
Query: 112 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171
R +++ + + + G+ G G K
Sbjct: 140 LRQALLELRPAKNV-------LID-----------GVL-GSG--------------K--- 163
Query: 172 AVNQLFQLTTCLGILVANLINYGTEKIHPWG--WRLSLGLATVPATLM------------ 217
T + + V +Y + + W L+L P T++
Sbjct: 164 ---------TWVALDVCL--SYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 218 -FVGGLFLPETPNSLVEQGKLDEARK------------VLEKVRGTANVDAEF------- 257
+ + + E R+ VL V+ +A F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKIL 269
Query: 258 --------SDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309
+D + A+ + L++ L Q L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDL---------- 318
Query: 310 PVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVA 369
P V+T + ++I+ + D + + + ++ +
Sbjct: 319 P---------------REVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 370 ITLALEFGEGKPLPKGIGIF---LVI---VICLFVLAYGRSWGPLGWLVPSELFPLEM-- 421
+ LE E + + + +F I ++ L W + + +
Sbjct: 363 LN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------WFDVIKSDVMVVVN 409
Query: 422 RSAGQSVVVCNNLLFTALIAQAFLAALCHL------------KFGIFLVF---GGLVVIM 466
+ S+V T I +L L + I F + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 467 SAFIYFFL--------PETKQVPIEEIYLLFENHWFWKRIVKED 502
+ Y + + ++L F + ++I +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDS 511
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.38 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.34 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.28 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.26 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.24 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.16 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-49 Score=389.64 Aligned_cols=446 Identities=27% Similarity=0.491 Sum_probs=352.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHh
Q 010433 23 TSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFG 102 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 102 (511)
+++.+.++++++++.+++|||.++++.+ +|.+.++|..+. +...+.++.+.|++.+++.+|..+|+++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~~ 74 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGAL 74 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999877 788888773221 1111446778899999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhc
Q 010433 103 ASYVTRSRGRRASIMVGSVSFFIGAILNA------------------CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 164 (511)
Q Consensus 103 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 164 (511)
+|+++||+|||++++++.+++.+++++++ +++|++.++++|+++|++.|...+....+++|+
T Consensus 75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~ 154 (491)
T 4gc0_A 75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL 154 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 478999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC------CccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHH
Q 010433 165 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (511)
Q Consensus 165 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 238 (511)
.|+++|++..++.+.+..+|.++++.++....... ..+||+.+.+..++.++..+..+++||||+|+..+++.+
T Consensus 155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence 99999999999999999999999998876554322 257999999999998888888889999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCC
Q 010433 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGF 318 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (511)
++++.+++...++..+++..+..+...+.++ .......+ ..++...... ...+.+..+.+.+.+|.|.+.+..+.
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQAVQEIKHSLDHGRK-TGGRLLMF---GVGVIVIGVM-LSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHS---CCTHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHhHHHhcCCchhHHHHHHHHHHHHhhhh-hhhHHHHh---cccHHHHHHH-HHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 9999988876554443333333222222222 11112222 2223333333 56667777888888999999999888
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 010433 319 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFV 398 (511)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (511)
+...........++..+++.++++++.||+|||+.+..+...+.++++.+...... ....+..+....++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYV 380 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHH
Confidence 88888888888899999999999999999999999998888877777666554322 122344455555666
Q ss_pred HHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------c-hhhHHHHHHHHHHHHHHHH
Q 010433 399 LAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL------K-FGIFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 471 (511)
.+++.++.++.+.+.+|++|++.|++++|+.+..+++++++++.+++.+.+.. + ...++++++++++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66777788888889999999999999999999999999999998887664322 2 2345677777778888888
Q ss_pred hccccCCCCCHHHHHHHhccCcc
Q 010433 472 FFLPETKQVPIEEIYLLFENHWF 494 (511)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~ 494 (511)
+++||||++++||+|+..|++.+
T Consensus 461 ~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 461 KFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHCCCCTTCCHHHHGGGTC----
T ss_pred heecCCCCCCHHHHHHHhCCCCc
Confidence 99999999999999887765543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=299.55 Aligned_cols=371 Identities=13% Similarity=0.136 Sum_probs=276.3
Q ss_pred HHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 010433 28 IACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVT 107 (511)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 107 (511)
.....+++..+..+++....++. +|.+.+++ |++..+.|++.+++.+++.++++++|+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~ 85 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGILM 85 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444456667778877777666 67777777 89999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 108 RSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 108 dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
||+|||++++.+.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 165 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCcc------------------------chHHHHHHHHHHHHHHHHhc--cccCChhHHHhcCCHH
Q 010433 185 ILVANLINYGTEKIHPWG------------------------WRLSLGLATVPATLMFVGGL--FLPETPNSLVEQGKLD 238 (511)
Q Consensus 185 ~~~g~~l~~~~~~~~~~~------------------------wr~~f~~~~~~~~~~~~~~~--~~~esp~~l~~~~~~~ 238 (511)
.+++++++.......... ||+.|++.+++.++..+..+ ..||+++. +++++
T Consensus 166 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~ 242 (438)
T 3o7q_A 166 AIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSDA 242 (438)
T ss_dssp HHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCCS
T ss_pred HHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccccc
Confidence 999999976655122212 99999887777666544433 35665531 00000
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHH-HHH-c
Q 010433 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI-FQS-L 316 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 316 (511)
. +++.+.+++++++++..+... +..+...........+.|.+ +++ +
T Consensus 243 --------------~-------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (438)
T 3o7q_A 243 --------------K-------------QGSFSASLSRLARIRHWRWAV-----LAQFCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_dssp --------------S-------------TTSHHHHHHHHTTCSHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred --------------c-------------ccchhhhHHHHHhChHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 0 000112344556655544333 23333444456677888888 777 4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010433 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICL 396 (511)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
|+++.+++.......++.+++.++.+++.||++||+.+..+..+..++.+++... ...+ ......+
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~ 356 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHV-GLIALTL 356 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHH-HHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcH-HHHHHHH
Confidence 9999999999999999999999999999999999998888777666655544332 1112 2233344
Q ss_pred HHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Q 010433 397 FVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFI 470 (511)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 470 (511)
.+.+.+..+ +..+.+..|.+|++ ++.+.++.. ...+++.++|.+.+.+.+..+ +...+.+.+++.+...+.
T Consensus 357 ~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 357 CSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 445544444 44566657888876 888888776 677999999999999999888 666655555554444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=307.44 Aligned_cols=399 Identities=12% Similarity=0.038 Sum_probs=284.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 010433 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (511)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 101 (511)
.+++.+......+++.+..+++...+++. +|.+.++ + .+..+.|++.+++.++..++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~-~s~~~~g~~~~~~~~~~~~~~~ 80 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALA--MPYLVEQ------------------G-FSRGDLGFALSGISIAYGFSKF 80 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHH--HHHTTSS------------------T-TCSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH------------------h-ccHhHHHHHHHHHHHHHHHHHH
Confidence 44455666667777778888887776554 4444333 3 5788999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHH
Q 010433 102 GASYVTRSRGRRASIMVGSVSFFIGAILNAC----AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLF 177 (511)
Q Consensus 102 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 177 (511)
++|+++||+|||+++..+.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.
T Consensus 81 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 160 (451)
T 1pw4_A 81 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 160 (451)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred hHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchH
Q 010433 178 QLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDA 255 (511)
Q Consensus 178 ~~~~~~G~~~g~~l~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (511)
+.+.++|.+++|++++.+. +..+ ||+.|++.+++.++..++ .+++||+|++...+++.+.. .+.+.
T Consensus 161 ~~~~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 228 (451)
T 1pw4_A 161 NCAHNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPD 228 (451)
T ss_dssp HHHHHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC---
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccc
Confidence 9999999999999976544 2346 999999999888776544 56688887542211111000 00000
Q ss_pred HHHHHHHHHHHHHhccCC--hHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH
Q 010433 256 EFSDLIDASNAARAIKNP--FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (511)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 332 (511)
+ . +.+++++....+ .++.++++.. .... +..+...........+.|.++++ +|+++.+.+.......+
T Consensus 229 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 229 D---Y-NEKAEQELTAKQIFMQYVLPNKLL----WYIA-IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp --------------CCTHHHHHHTSSCHHH----HHHH-HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred c---c-hhhhhcccccccchHHHHHcCHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 0 000000000111 2233333222 2222 34444555566778889999877 89999999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CChhHHHhhhHHHH-HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccc
Q 010433 333 ALCIAALISMAFVDKF--GRRAFFLEAGTEMI-IYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLG 409 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (511)
+.+++.++.+++.||+ ++|+.+..+..+.. ++++++... +....+.......+.+.+.+... +..
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~-~~~ 367 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGPV-MLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhchH-HHH
Confidence 9999999999999999 99887766554443 222222111 11123334444444444443333 333
Q ss_pred ceeecccCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhcc
Q 010433 410 WLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 410 ~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
..+..|.+|++.|+++.|+.+....+ +..+++.+.+.+.+..++...+.+.+++.+++.+...+.
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55668999999999999999999999 999999999999998887665555555555544444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=262.69 Aligned_cols=392 Identities=16% Similarity=0.099 Sum_probs=250.7
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhh
Q 010433 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 77 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 155 (511)
++|++..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.++++++++++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 348999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCC--CchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc-cC----Ch
Q 010433 156 AVPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PE----TP 228 (511)
Q Consensus 156 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e----sp 228 (511)
...+++.|++|+++ |++++++++.+.++|.+++|.+++.+.. ..+||+.|++.++..++..+..++. |+ ..
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE--AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 99999999999988 6778888999999999999999766554 3489999999877766654443322 21 11
Q ss_pred hHHHhcCCHHHHHHHHHH----------------HhCCCcchHHHHHHHHH------HHHHHhccC-ChHHhhccCCchh
Q 010433 229 NSLVEQGKLDEARKVLEK----------------VRGTANVDAEFSDLIDA------SNAARAIKN-PFRNLFKKKNRPQ 285 (511)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~ 285 (511)
+....+.+.++.++..+. ..+..+.+......... .......+. ......+++....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY 285 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 100111223333332222 11111111110000000 000000000 0001111111111
Q ss_pred HHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-----hhhH
Q 010433 286 LVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL-----EAGT 359 (511)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~ 359 (511)
.... +..+.....+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+..
T Consensus 286 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 286 IPLF---IAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp HHHH---HHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 1111 12222333344455667777765 6777667788888888999999999999999999986544 4444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHH
Q 010433 360 EMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTAL 439 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 439 (511)
+..++++++....... .. ......+.......+.+.+.+.. .+....++.|.+|++.|+++.|+.+....++..+
T Consensus 363 ~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 363 FAGLSFLLMAIPGALY---GT-SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHTTTHHHHHHC---CC-CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CC-CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444443332110 00 01122333444445555554433 3455667789999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCC
Q 010433 440 IAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (511)
++.+.+.+.+......+..+++++.+..++.+...++.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 438 NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988776654445555555555555555555555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=272.27 Aligned_cols=360 Identities=14% Similarity=0.145 Sum_probs=266.4
Q ss_pred HHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 010433 32 VAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 111 (511)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 111 (511)
.++++.++.+++...+.+. +|.+.+++ |.+..+.+++.+++.++..++++++|+++||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 63 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPA--IADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG 63 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhhh--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566677777776655 57777766 889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010433 112 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (511)
Q Consensus 112 rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 191 (511)
||+++..+.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+
T Consensus 64 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 64 RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCccchHHHHHHHHHHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhc
Q 010433 192 NYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAI 270 (511)
Q Consensus 192 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (511)
++... +..+||+.|++.++..++..+ ..+++||++++. +++ ++.
T Consensus 144 ~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------------------------~~~ 188 (375)
T 2gfp_A 144 GGLLD--TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD--APR-------------------------------TRL 188 (375)
T ss_dssp HHHSS--CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--CCC-------------------------------CCT
T ss_pred HHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--ccc-------------------------------ccH
Confidence 66554 335899999999888877766 456678876421 000 011
Q ss_pred cCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010433 271 KNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFG 349 (511)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 349 (511)
+.++++.++++..+... +..+...........+.|.++++ +|.++.+.+.......++.+++.++.+++.||.+
T Consensus 189 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~ 263 (375)
T 2gfp_A 189 LTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS 263 (375)
T ss_dssp TTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555554333322 23333444455666777777765 7888899999999999999999999999999988
Q ss_pred ChhHHHhhhHH-HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHH
Q 010433 350 RRAFFLEAGTE-MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV 428 (511)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 428 (511)
++. ..+... ...+...+...... ....+.......+.+.+.+... +....+..|..| +.|+++.|+
T Consensus 264 ~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~~g~ 330 (375)
T 2gfp_A 264 TLM--WQSVICCLLAGLLMWIPDWFG---------VMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGAL 330 (375)
T ss_dssp HHH--HHHHHHHHHTSSSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhhhc---------cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchHHHH
Confidence 732 222222 12221111111100 0122333444455555555444 444566678888 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 429 VVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
.+....++..+++.+.+.+.+..++...+.+.++..
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 999999999999999999887766665555544333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=235.42 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=127.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhhhhhh
Q 010433 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 80 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
++..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhHhHhcCCCCCCchhHHH---HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhc
Q 010433 158 PLYLSEMAPAKIRGAVNQL---FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (511)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+. +..+||+.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL--KNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH--HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 89999999999999865544 335899999998888776655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-28 Score=233.43 Aligned_cols=354 Identities=13% Similarity=0.061 Sum_probs=215.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHH---HHHHhhHH-HHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI---LNACAVHI-SMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~~~~~ 154 (511)
|++..+.|++.+++.+++.++++++|+++||+|||++++.+..+++++.. ...+++.. ..++..+.+.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998887765322 12233322 124456677666666555
Q ss_pred hhhhhHhHhcCCC--CCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHH
Q 010433 155 QAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 232 (511)
Q Consensus 155 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~ 232 (511)
+.....+.++.++ ++|+...+....+..+|..++|.+++.+.. .+||+.|++.++..++..+..++.+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 5555555555433 456777788878888899999988766553 379999998877765555555554443311
Q ss_pred hcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHH
Q 010433 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (511)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (511)
+.+.++.+ ..... +....+.++.++++..+...+ ..+.....+..+..+.|.+
T Consensus 194 -~~~~~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 194 -SATVANAV-------GANHS--------------AFSLKLALELFRQPKLWFLSL-----YVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp -SSCSSSSS-------SSCCC--------------CCCHHHHHHHTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccc-------ccccc--------------cccHHHHHHHhcCCchhhHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000 000011233444433332221 1121122233344456766
Q ss_pred HHH-cC---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhH
Q 010433 313 FQS-LG---FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 388 (511)
Q Consensus 313 ~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
+.+ ++ .+....+.......++.+++.++.+++.||++||+.+..+..+..+..+.+... ...+
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~ 313 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------------TSAL 313 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------------CSHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------------ccHH
Confidence 654 33 224455677777788888999999999999999998876665555443332211 1122
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 010433 389 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV-VCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 467 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (511)
..+....+...+..... +..+.+++|.+|++.|+++.++. +....+++.++|.+.|.+.+..++...+...+++.+++
T Consensus 314 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 22222222333222111 22355678999999999999985 77888999999999999988777655554444444444
Q ss_pred H-HHHhccccCC
Q 010433 468 A-FIYFFLPETK 478 (511)
Q Consensus 468 ~-~~~~~~~~~~ 478 (511)
. +.+...+|++
T Consensus 393 ~~~~~~~~~~~~ 404 (417)
T 2cfq_A 393 TLISVFTLSGPG 404 (417)
T ss_dssp HHHHTTSSCCSC
T ss_pred HHHHHhhhcCCC
Confidence 3 3344444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=124.61 Aligned_cols=148 Identities=8% Similarity=-0.096 Sum_probs=115.8
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
...+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444455667778888889999999999999999999999999999999999999999999888888777763321
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL-CHL 451 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 451 (511)
. ....+..++..++.+.+.+... +....++.|.+|+++|+.++++.+....+|..+++.+.+.+. +..
T Consensus 113 ~----------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 113 E----------IMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp H----------TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred c----------cccHHHHHHHHHHHHhhHHHhh-hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 1223445555566666655444 344666789999999999999999999999999999999888 443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-12 Score=122.64 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=123.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc--chhHHHHHHHHHHH-HHHHHHHHh--hHHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMVGSVSFF-IGAILNACA--VHISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~l~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~ 153 (511)
|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence 88999999999999999999999999999999 99999888877766 666666665 36788888899999999999
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHH-HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (511)
.+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.. ..||+..|++.++..++..+..+++
T Consensus 364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD--FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999665544 3479999999888877766554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.1e-12 Score=123.09 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=121.0
Q ss_pred HHHhhhcchhhHHhcHHHHHHH------cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHhhhHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQS------LGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMV 366 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~ 366 (511)
..+.....++....+.+.++++ +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+..+..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3444444556666667776644 89999999999999999999999999999999 8999999988877777666
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccc--hhhHHHHHHHHHHHHHHHHHHHH
Q 010433 367 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAF 444 (511)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~ 444 (511)
+.... ...+..++...+.+.+.+... +....++.|.+|++. |+.+.++.+....+|..++|.+.
T Consensus 101 ~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 101 VLALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 55432 122344445555555555443 444666789999988 77788888899999999999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHH
Q 010433 445 LAALCHLKFGIFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (511)
+.+.+..++...+...++..+.+.+..
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887766655555444444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-12 Score=122.03 Aligned_cols=146 Identities=10% Similarity=0.077 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 160 (511)
+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888999999999999999999999999988888887777777888888888888898887777788899
Q ss_pred hHhcCCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 161 LSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 161 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
+.|.+|++.|+++.+. ++....+|.+++|.+++.+.. ..|++..|.+.+++.++..+. ..+.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~--~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH--HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 488888999999999765543 347888998888887776555 44466654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=117.86 Aligned_cols=166 Identities=12% Similarity=0.042 Sum_probs=119.8
Q ss_pred HHhhhcchhhHHhcHHHHHH-HcC------CCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHhhhHHHHHHHH
Q 010433 295 AFQQLTGMNSILFYAPVIFQ-SLG------FGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMV 366 (511)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~ 366 (511)
.+.....++....+++.++. ++| +++.+.++..+...++..++.++.|+++||+ |||+.+..+..+..++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33344445556667777664 588 9999999999999999999999999999999 999998888777777666
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHH---HHHHHHHHHHHHHHH
Q 010433 367 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV---VVCNNLLFTALIAQA 443 (511)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~~~~~~ 443 (511)
+..... ...+..++...+.+.+.+... +....++.|.+|++.|+.+.+. .+....+|..++|.+
T Consensus 101 ~~~~~~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 101 FLAIFE------------HSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHTS------------SCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhc------------ccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555431 123444455555555555443 4446667899999999766666 888899999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHhc
Q 010433 444 FLAALCHLKFGIFLVFGGLVVIMSAFIYFF 473 (511)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
.+.+.+..++...+.+.++..+...+....
T Consensus 168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp STHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999888777776655555554444444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=116.58 Aligned_cols=171 Identities=13% Similarity=0.104 Sum_probs=126.1
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 373 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
..+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 86 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-
Confidence 3344444455566677877888999999999999999999999999999999999999999988888887777766542
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010433 374 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 453 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (511)
..+..+....+.+.+.+.. .+....++.|.+|+++|++++++.+....++..++|.+.+.+.+..++
T Consensus 87 ------------~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 87 ------------SLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 2234444445555554433 344456668999999999999999999999999999999988877776
Q ss_pred hhHHHHHHHHHHHHHH-HHhccccCC
Q 010433 454 GIFLVFGGLVVIMSAF-IYFFLPETK 478 (511)
Q Consensus 454 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 478 (511)
...+.+.++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6655554444444333 444455543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-10 Score=111.87 Aligned_cols=150 Identities=19% Similarity=0.112 Sum_probs=106.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-----HISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~ 153 (511)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...++..-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 44566666777777888899999999999999999999998888888776665432 2222222222222222234
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc----cCCccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~----~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
.+....+.+|.+|.+.|++++++......+|..+++.+...+.. ....++...|++.++++++..+. ++++|||.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 56777899999999999999999999999988888766332221 11134567788888887777554 67799985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 511 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-11 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.003 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 64.3 bits (155), Expect = 1e-11
Identities = 52/406 (12%), Positives = 107/406 (26%), Gaps = 33/406 (8%)
Query: 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL----NACAVHI 136
L S + A S F V+ R + G + + I
Sbjct: 57 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI 116
Query: 137 SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196
+++ + G G G + K RG + ++ +G + L+
Sbjct: 117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176
Query: 197 KIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAE 256
A + + +TP S G ++
Sbjct: 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS-----------------CGLPPIEEY 219
Query: 257 FSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-S 315
+D D N + + +F + P ++ + I IL ++P +
Sbjct: 220 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 279
Query: 316 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 375
F + ++ + A L+ DK R + +TL
Sbjct: 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG---------NRGATGVFFMTLVTI 330
Query: 376 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL 435
+ + ++ + + L L EL P + L
Sbjct: 331 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 390
Query: 436 FTALIAQAFLAALCHL--KFGIFLVFGGLVVIMSAFIYFFLPETKQ 479
++ A A + G F+V G ++ + + K+
Sbjct: 391 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 0.003
Identities = 36/404 (8%), Positives = 98/404 (24%), Gaps = 46/404 (11%)
Query: 87 LFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA----CAVHISMLLLG 142
+ +++ L+ ++ G R ++ + + +L+G
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 143 RIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG 202
I G+ +GF A + R + + + + A +
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166
Query: 203 WRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 262
+ + L + + P+S +
Sbjct: 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS-------------------- 206
Query: 263 ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGA 322
LF++ L + +G+ +
Sbjct: 207 -----AFSLKLALELFRQPKLWFLSLYVIGVSCTYD--------VFDQQFANFFTSFFAT 253
Query: 323 ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 382
+ + G + L++ + + + +++ I+++ + L
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313
Query: 383 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ 442
I L + F+L + + F + + V C +
Sbjct: 314 EVVILKTLHMFEVPFLL-------VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 443 AFLAALCHLK--FGIFLVFGGLVVIMSAFIYFFLPETKQVPIEE 484
+ G +LV G + + + F L + +
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.4 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.39 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-38 Score=305.69 Aligned_cols=402 Identities=13% Similarity=0.003 Sum_probs=273.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHH
Q 010433 19 EYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLV 98 (511)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i 98 (511)
++++++++|.+...+.++.+..+++...++.+ .|.+ +|+ |+|.+|.|++.+++.+++.+
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~--~p~~-~~~------------------g~s~~~~g~~~s~~~~~~~~ 74 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALA--MPYL-VEQ------------------GFSRGDLGFALSGISIAYGF 74 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH--HHHT-TSS------------------TTCSSCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHh------------------CcCHHHHHHHHHHHHHHHHH
Confidence 44455667777777788888888887776654 3433 334 88999999999999999999
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhH
Q 010433 99 STFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (511)
Q Consensus 99 ~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 174 (511)
+++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+....++.|++|+++|++++
T Consensus 75 ~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~ 154 (447)
T d1pw4a_ 75 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV 154 (447)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999988764 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcc
Q 010433 175 QLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANV 253 (511)
Q Consensus 175 ~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (511)
++.+.+..+|.++++.++....... .+||+.|++.+++.++..+. +.+++|+|+........+.
T Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 219 (447)
T d1pw4a_ 155 SVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------- 219 (447)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------
T ss_pred cccccccchhhhhhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------
Confidence 9999999999999998865544322 37999999988888776554 4556666643211111100
Q ss_pred hHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH
Q 010433 254 DAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (511)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 332 (511)
+.+..+..++ +.++.....+...+.....+...... ...+......+....+.|.++.+ .+++..+.+.......+
T Consensus 220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 220 KNDYPDDYNE--KAEQELTAKQIFMQYVLPNKLLWYIA-IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296 (447)
T ss_dssp CCC---------------CCTHHHHHHTSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred hhhcccchhh--ccccccchhhHHHHHHHcCchHHHHH-HHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence 0000000000 00000111111111111122222222 33444455556677788888755 78999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccccee
Q 010433 333 ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 412 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (511)
..+++.++.+++.||++|++..................... ......+...+..++.+++.. ...+....+
T Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 367 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--------NPAGNPTVDMICMIVIGFLIY-GPVMLIGLH 367 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS--------CCTTCHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999876554443333322222222110 111223333444444444333 223444566
Q ss_pred ecccCCccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q 010433 413 PSELFPLEMRSAGQSVVVCNNLLF-TALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 468 (511)
Q Consensus 413 ~~~~~p~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
..|.+|++.|+++.|+.+...+++ ..++|.+.+.+.+..++...+.+...+.+.+.
T Consensus 368 ~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 424 (447)
T d1pw4a_ 368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424 (447)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 689999999999999999888875 45678889999999886654444444333333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7.5e-28 Score=230.72 Aligned_cols=356 Identities=12% Similarity=0.070 Sum_probs=227.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM----LLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~----l~~~r~l~G~~~~~~~ 154 (511)
|+|.+++|++.+++.++..++++++|+++||+|||++++.+..+..++..+..+..+... .++.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 889999999999999999999999999999999999999999999999888888766544 3455556555555555
Q ss_pred hhhhhHhHhcCCC--CCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHHhccccCChhHH
Q 010433 155 QAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPETPNSL 231 (511)
Q Consensus 155 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~esp~~l 231 (511)
........+..++ +++.+..+........+..+++.+++..... +|+..+........+. .+..+..+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 194 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPSS- 194 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCCSCSS-
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhcccccc-
Confidence 5555444444332 3455677788888888999999887665543 4666665555555444 4446667776531
Q ss_pred HhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCCh---HHhhccCCchhHHHHHHHHHHHhhhcchhhHHhc
Q 010433 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF---RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (511)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
+++.++. +++..+... .+..+.+..+....... .... ........
T Consensus 195 --~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~ 242 (417)
T d1pv7a_ 195 --ATVANAV-------------------------GANHSAFSLKLALELFRQPKLWFLSLYVI-GVSC----TYDVFDQQ 242 (417)
T ss_dssp --SCSSHHH-------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHH-HHHH----HHHHHHHH
T ss_pred --hhhhhhh-------------------------hhhcccccccccccccccccccchhhhhH-HHHH----HHHhhhcc
Confidence 1111110 000011111 11222222222221111 1111 11112222
Q ss_pred HHHHHHH----cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 309 APVIFQS----LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 309 ~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
.+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------- 309 (417)
T d1pv7a_ 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------- 309 (417)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------------
Confidence 2222222 23344556677778888899999999999999999998888777766665554432
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLKFGI-FLVFGGL 462 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 462 (511)
...+.......+.+.+.+... +....+..|.+|++.|+++.|+.. ....++..++|.+.|.+.|+.|+.. +++.+++
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~ 388 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 223444555555555555444 344566689999999999999864 4567899999999999999988654 4455555
Q ss_pred HHHHHHHHHhccccCCCCCHHH
Q 010433 463 VVIMSAFIYFFLPETKQVPIEE 484 (511)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (511)
.++..++..+.++++++.+..+
T Consensus 389 ~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 389 ALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHhhcCCCccchhH
Confidence 5555556666666666555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=4.2e-13 Score=128.56 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=116.0
Q ss_pred HHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 305 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
+....|. +++.|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++........
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--------- 113 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh---------
Confidence 3444453 466899999999999999999999999999999999999999988888877777666543211
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhh-HHHHHHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL-KFGI-FLVFGGL 462 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 462 (511)
...+..++...+.+.+.+..+. ....++.|.+|+++|+.++++.+....+|..+++.+.+...+.. ++.. +++...+
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 1223344444555555444443 33556689999999999999999999999999999888776654 3443 3444444
Q ss_pred HHHHHHHHHhccccC
Q 010433 463 VVIMSAFIYFFLPET 477 (511)
Q Consensus 463 ~~~~~~~~~~~~~~~ 477 (511)
..+..++.+.+.++.
T Consensus 193 ~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 193 AILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHhcccc
Confidence 445555555555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=3.1e-13 Score=127.72 Aligned_cols=146 Identities=9% Similarity=0.062 Sum_probs=127.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHH-HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccC
Q 010433 159 LYLSEMAPAKIRGAVNQLF-QLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPE 226 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 226 (511)
+++.|.+|+++|+++.+.. +....+|..++|.+++.+.+ ..||+..|++.+++.++..++ .+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--SIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 56778999999999655543 358999999988887776555 344443
|