Citrus Sinensis ID: 010435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSYL
Secondary Structure (PSIPRED)
cccccccccccccEEEcccHHHHHHHHHcccccccEEEEEEcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEcEEEEccccccccccccccccccEEEEcccEEEEEccEEEEEcccccccHHHHHHHHHccccccccEEEEEcccccccccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEcccccHHHHHHHHHcccccccEEEEEEEccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEcEEEEEcccccccEEEEEcccccEEEEccEEEEcccccEEEEEcccccccccHHHHHcccccccccEEEEEccccccHHHHHHHHHHccccccccHHccc
Coil and Loop (DISEMBL)
mrnnpgraipsskvmsfRTAAevddwlysnpmrcpgalhfvdrnattisygiqtnstpiemrgryedptfkfqiPLQLAAEREIARSlvgdpnfswvvglkefahppgeifsAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFIskssssttiGFSVFIVGFLTQLVTafgfpysdqfsntyRTIWSLFPPNLLAEALQLLSdatetpqdigiswsrraecapndtecviTINDIYIWLVATFFVWFILAIYLdniipnaagvrkstfyflkpgywtgkggnkieegsicscvgsvppmehitpddedvLEEENMVKQQIresipdpnvAVQIRGLvktfpgtrkigccckcqktspyhaiKGLWVNIAKDQLfcllgpngagktttiscltgitpvtggdalIYGFSIRSSvsmtniqksigvcpqvtlfsyl
Flexible Loop (DISEMBL)
mrnnpgraipsskvmsfRTAAEVDDWLYSNPMRCPGALHFVDRNATTisygiqtnstpieMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGIswsrraecapnDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQiresipdpnvaVQIRGLVktfpgtrkiGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIqksigvcpqvtlfsyl
Low Complexity Region (SEG)
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDfflnnsfavlfllfflfelnMTGfafmfsafiskssssttigfsvfIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSYL
Disordered region (IsUnstruct)
****************FRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSV******************************PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFS**
Disordered Region (DISOPRED)
******RAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWT***************************************************VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSYL
Disordered Region (DISEMBL)
***********SKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSYL
Disordered Region (DISPRO)
*****GRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGG******************************E******QIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
Q84K47	983	ABC transporter A family	yes	no	0.984	0.510	0.736	0.0
Q9FLT5	950	ABC transporter A family	no	no	0.984	0.528	0.703	0.0
Q9FKF2	953	ABC transporter A family	no	no	0.984	0.526	0.691	0.0
Q8T5Z7	877	ABC transporter A family	yes	no	0.741	0.431	0.295	2e-34
Q8WWZ7	1642	ATP-binding cassette sub-	yes	no	0.649	0.201	0.310	4e-33
Q8CF82	1642	ATP-binding cassette sub-	yes	no	0.623	0.193	0.29	5e-30
Q84M24	1882	ABC transporter A family	no	no	0.631	0.171	0.297	4e-29
Q8K448	1642	ATP-binding cassette sub-	yes	no	0.645	0.200	0.313	2e-28
Q9FLT8	917	ABC transporter A family	no	no	0.721	0.401	0.262	3e-28
O94911	1581	ATP-binding cassette sub-	no	no	0.647	0.208	0.255	1e-27

>sp|Q84K47|AB2A_ARATH ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/504 (73%), Positives = 430/504 (85%), Gaps = 2/504 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQ 503
           IYG SIRSSV M+NI+K IGVCPQ
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQ 613

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLT5|AB9A_ARATH ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/506 (70%), Positives = 410/506 (81%), Gaps = 4/506 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP++KV SF    EVD W  S+P +  GALHFV++NAT ISYGIQTNS+  +
Sbjct: 111 MANNPGRPIPTNKVQSFTKPEEVDAWFMSHPSQVTGALHFVEKNATVISYGIQTNSSSEK 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPP--GE-IFSAVARI 117
            RGR EDPTFKF +PLQ+AAEREIARSL+GDP FSW  G KEFA P   GE I SA   +
Sbjct: 171 KRGRREDPTFKFLVPLQIAAEREIARSLIGDPKFSWDFGFKEFARPAIGGEVIISAFYLM 230

Query: 118 GPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLF 177
           GP FFLA +MFGFV Q+ S+VTEKELKLR+ MT MG+Y+SAYWLSWL WEG L  +SSLF
Sbjct: 231 GPVFFLAFSMFGFVLQLGSVVTEKELKLREAMTTMGVYESAYWLSWLIWEGILTFVSSLF 290

Query: 178 IVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVG 237
           +V+FGMMFQF+FFL NSF ++FLLFFLF+ NM G AF  S+ ISKSSS+TT+GF VF+VG
Sbjct: 291 LVLFGMMFQFEFFLKNSFVLVFLLFFLFQFNMIGLAFALSSIISKSSSATTVGFLVFLVG 350

Query: 238 FLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAEC 297
           F+TQ+VT  GFPYS  +S   R IWSLFPPN  +  LQLL +AT +P D GISWS RA C
Sbjct: 351 FITQIVTTAGFPYSSAYSIGSRVIWSLFPPNTFSAGLQLLLEATSSPGDSGISWSERAIC 410

Query: 298 APNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGG 357
           A  ++ CVIT N IYIWLV TFF WF+LA+Y DNIIPNA+GVRKS FYFLKP YWTGK G
Sbjct: 411 AGGESTCVITTNKIYIWLVGTFFFWFVLALYFDNIIPNASGVRKSIFYFLKPSYWTGKEG 470

Query: 358 NKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFP 417
           NK+EEGSICSC+GSVPP+EHITP+DEDVLEEE +VKQQ  +   DPN+AVQI GL KT+P
Sbjct: 471 NKVEEGSICSCIGSVPPVEHITPEDEDVLEEEILVKQQAMDGRVDPNIAVQIHGLAKTYP 530

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           GT K+G CCKC KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTISCLTGI PVTGGD
Sbjct: 531 GTTKLG-CCKCTKTSPFHAVKGLWMNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGD 589

Query: 478 ALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           A IYG SIRSSV M+NI+K IGVCPQ
Sbjct: 590 AKIYGNSIRSSVGMSNIRKMIGVCPQ 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKF2|AB11A_ARATH ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/505 (69%), Positives = 411/505 (81%), Gaps = 3/505 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP++KV SF+   EVD WL S+P++ PGALHFV+RNA+ ISYG+QTNS+   
Sbjct: 111 MANNPGRPIPTNKVQSFKEPDEVDTWLLSHPLQVPGALHFVERNASVISYGVQTNSSSES 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPP--GEIFSAVARIG 118
            RG+ EDPTFKF +PLQ+AAEREIARSL+GDPNF W +G KEFA P    E  SA++ +G
Sbjct: 171 KRGQTEDPTFKFLVPLQVAAEREIARSLLGDPNFGWGLGFKEFARPAIITETTSALSVMG 230

Query: 119 PTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFI 178
           P FFLA +MFGFV Q+ +LVTEKELKLRQ MTMMG+YDSAYWLSWLTWEG L L+SSLF+
Sbjct: 231 PVFFLAFSMFGFVLQLGALVTEKELKLRQAMTMMGVYDSAYWLSWLTWEGILTLVSSLFL 290

Query: 179 VIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGF 238
           V+FGM+F+FDFFL NSF ++FLLF LF+ NM G AF  S+ ISKSSS+TT+GF VF++GF
Sbjct: 291 VLFGMIFRFDFFLKNSFVLVFLLFLLFQFNMIGLAFALSSIISKSSSATTVGFLVFLIGF 350

Query: 239 LTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECA 298
           +TQ V+A GFPYS  ++ + R +WSLFPPN  +  L+LL DAT TP+  GISWS RA C 
Sbjct: 351 ITQFVSATGFPYSSSYAVSRRVMWSLFPPNTFSAGLKLLLDATSTPKSSGISWSNRAVCE 410

Query: 299 PNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGN 358
                CVI+IN IY WL+ TF  WF+LAIY DNIIPNA+GVRK  FYFL PGYWTGKGGN
Sbjct: 411 GGQATCVISINIIYQWLLGTFLFWFVLAIYFDNIIPNASGVRKPIFYFLAPGYWTGKGGN 470

Query: 359 KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPG 418
           K+EEGSI SCVGSVP +EH TP+D+DVLEEE  VKQQ  + I DPN+AVQI GL KT+PG
Sbjct: 471 KVEEGSIFSCVGSVPLVEHNTPNDKDVLEEETEVKQQAMDGIADPNIAVQIHGLAKTYPG 530

Query: 419 TRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478
           T K+G CCKC KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTISCLTGI PVTGGDA
Sbjct: 531 TTKLG-CCKCTKTSPFHAVKGLWMNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDA 589

Query: 479 LIYGFSIRSSVSMTNIQKSIGVCPQ 503
           LIYG SIRSSV ++NI+K IGVCPQ
Sbjct: 590 LIYGDSIRSSVGISNIRKMIGVCPQ 614

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T5Z7|ABCA1_DICDI ABC transporter A family member 1 OS=Dictyostelium discoideum GN=abcA1 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 203/446 (45%), Gaps = 68/446 (15%)

Query: 82  REIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARI-GPTFFLAVAMFGFVFQISSLVTE 140
           ++I    +  P  S+  G   F   P E     AR+ G  F+   +M  F+F +  +  E
Sbjct: 237 QKIRNEKIPPPTISY--GSNAFPRYPPE--QGAARVWGGLFYYCGSMISFIFLLYKVSFE 292

Query: 141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFL 200
           KE KL+Q M MMGL  + YW+SW     T+ +L SL  +I G+  Q  FFL ++F VL +
Sbjct: 293 KENKLKQGMVMMGLSVNQYWISWFITSFTIDILISLITIIVGLACQLPFFLGSNFFVLII 352

Query: 201 LFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTA------FGFPYSDQF 254
            F LF ++M+  AF    FI  + S+  IG  +FIVG + QLV +      F   Y    
Sbjct: 353 TFSLFTISMSSVAFFLLTFIQSTKSAIGIGMGIFIVGSIFQLVFSGMGTMIFELIYQTNS 412

Query: 255 SNTY--RTIWSLFPPNLLAEALQLLSDAT-----------ETPQDIGISWSRRAECAPND 301
           +     R I    P     + L  + + T           +   D+ I  +      P  
Sbjct: 413 NGALAARIILFFIPMFHFTKVLTDIGNVTTNYPLLTYKFSDLSTDLNIGGTVLKTVIPTT 472

Query: 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIE 361
            + +        +L+A   V+ +LA Y ++IIP   G     ++F+ P YW         
Sbjct: 473 GQSI-------CYLLALIGVYTVLAWYFEHIIPGNDGTSSPPWFFVLPSYWG-------- 517

Query: 362 EGSICSCVGSVPPMEHI-TP--DDEDVLEEENMVKQQIRESIPDPNVA-VQIRGLVKTFP 417
                    S+  + HI TP  DDED       V+  I ++    N A + I GL K++ 
Sbjct: 518 --------LSLKKVRHIPTPYFDDED-------VRAAITKAHDASNRAPLIICGLSKSYT 562

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
                    + +KT   HA+K L +++ K  +   LG NG GK+TTI  LTG+   T GD
Sbjct: 563 K------LFRPKKT--VHAVKYLSLSVEKGTILGFLGSNGCGKSTTIGMLTGLLEPTAGD 614

Query: 478 ALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           AL+YG S+ S+++   +++   V PQ
Sbjct: 615 ALVYGHSVISNIAA--VRRITSVVPQ 638

Dictyostelium discoideum (taxid: 44689)

>sp|Q8WWZ7|ABCA5_HUMAN ATP-binding cassette sub-family A member 5 OS=Homo sapiens GN=ABCA5 PE=2 SV=2

 Score =  143 bits (360), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 191/393 (48%), Gaps = 62/393 (15%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE K+++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKKIKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIV-GFLTQ 241
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +  GF+  
Sbjct: 286 TASLL--FPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGL 343

Query: 242 LVTAF-GFPYSDQFSNTYRTIWSLFPPNL-------LAEALQLLSDATETPQDIGISWSR 293
           ++     FP S         +W LF P         +A+ + L  D  E     G S+S 
Sbjct: 344 MIILIESFPKS--------LVW-LFSPFCHCTFVIGIAQVMHL-EDFNE-----GASFSN 388

Query: 294 RAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWT 353
                      +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+
Sbjct: 389 ---LTAGPYPLIITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS 441

Query: 354 GKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLV 413
            K     EE S  +  G++   E I P   + + +E                A++I G+ 
Sbjct: 442 -KSKRNYEELSEGNVNGNISFSEIIEPVSSEFVGKE----------------AIRISGIQ 484

Query: 414 KTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473
           KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++ L G+ P 
Sbjct: 485 KTY---RKKG--------ENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPP 533

Query: 474 TGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506
           + G A IYG  +     M   +K IG+CPQ+ +
Sbjct: 534 SDGFASIYGHRVSEIDEMFEARKMIGICPQLDI 566

May play a role in the processing of autolysosomes.

Homo sapiens (taxid: 9606)

>sp|Q8CF82|ABCA5_RAT ATP-binding cassette sub-family A member 5 OS=Rattus norvegicus GN=Abca5 PE=2 SV=1

 Score =  132 bits (333), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 184/400 (46%), Gaps = 82/400 (20%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE +L++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKRLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +V     L
Sbjct: 286 T--ASSLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGVVEFFVTVVFGFVGL 343

Query: 243 VTAF--GFPYSDQFSNTYRTIWSLFPPNL-------LAEALQL--------LSDATETPQ 285
           +      FP S         +W LF P         +A+ + L         S  TE P 
Sbjct: 344 LIVLVESFPRS--------LVW-LFSPLCQCAFLIGIAQVMHLEDFNEGALFSSLTEGPY 394

Query: 286 DIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFY 345
            + I+ +  A                   L + F+   +LA+YLD +IP   G+R+S+ Y
Sbjct: 395 PLIITLTMLA-------------------LDSVFYA--LLAVYLDQVIPGEFGLRRSSLY 433

Query: 346 FLKPGYWTGKGGN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDP 403
           FLKP YW+    N  ++ EG+I    G++   E + P   + + +E              
Sbjct: 434 FLKPSYWSKNKRNYKELSEGNIN---GNISLNEIVEPVSSEFIGKE-------------- 476

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
             A++I G+ K +   RK        K     A++ L  +I + Q+  LLG +G GK+T 
Sbjct: 477 --AIRISGIQKAY---RK--------KNETVEALRNLSFDIYEGQITALLGHSGTGKSTL 523

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           ++ L G+ P + G A IYG  +     M   +K IG+CPQ
Sbjct: 524 MNILCGLCPPSDGFASIYGHRVSEIDEMFEARKMIGICPQ 563

May play a role in the processing of autolysosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 181/386 (46%), Gaps = 64/386 (16%)

Query: 134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSW-LTWEGTLVLLSSLFIV-IFGMMFQFDFFL 191
           IS  V EKE K+R+ + MMGL D  + LSW +T+     L S +      G +F++    
Sbjct: 295 ISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKY---- 350

Query: 192 NNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPY- 250
            +   ++F  FFLF L+    +FM S F +++ ++  +G   F+  F         FPY 
Sbjct: 351 -SDKTLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAF---------FPYY 400

Query: 251 ---SDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSR--RAECAPNDTECV 305
               +  S   + + SL  P   A AL  ++ A      +G+ WS   RA    +   C+
Sbjct: 401 TVNDESVSMVLKVVASLLSPT--AFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCL 458

Query: 306 ITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKS-TFYFLKPGYWTGKGGNKIEEGS 364
           +        ++    ++  L +YLD ++P   GVR    F F K   + G+  N ++   
Sbjct: 459 L-------MMLLDSILYCALGLYLDKVLPRENGVRYPWNFIFSK---YFGRKKNNLQN-- 506

Query: 365 ICSCVGSVPPME-HITPDDEDVLEEE------NMVKQQIRESIPDPNVAVQIRGLVKTFP 417
                  +P  E  + P D +V + E        +  ++R+   D    +Q+R L K + 
Sbjct: 507 ------RIPGFETDMFPADIEVNQGEPFDPVFESISLEMRQQELDGR-CIQVRNLHKVYA 559

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
             R  G CC         A+  L + + ++Q+  LLG NGAGK+TTIS L G+ P T GD
Sbjct: 560 SRR--GNCC---------AVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGD 608

Query: 478 ALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           ALI G SI +  +M  I+K +GVCPQ
Sbjct: 609 ALILGNSIIT--NMDEIRKELGVCPQ 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K448|ABCA5_MOUSE ATP-binding cassette sub-family A member 5 OS=Mus musculus GN=Abca5 PE=1 SV=2

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 190/389 (48%), Gaps = 60/389 (15%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE KL++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKKLKEFLKIMGLHDTAFWLSWVLLYASLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +V     L
Sbjct: 286 T--ASSLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGVVEFFVTVVFGFVGL 343

Query: 243 VTAF--GFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           +      FP S         +W LF P  L +   L+  A    Q + +          N
Sbjct: 344 LIVLIESFPRS--------LVW-LFSP--LCQCAFLIGIA----QVMHLEDFNEGALFSN 388

Query: 301 DTE----CVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKG 356
            TE     +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+   
Sbjct: 389 LTEGPYPLIITI--IMLALDSVFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKNK 444

Query: 357 GN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVK 414
            N  ++ EG+I    G++   E + P   + + +E                A++I G+ K
Sbjct: 445 RNYKELSEGNIN---GNISLNEIVEPVSSEFIGKE----------------AIRISGIQK 485

Query: 415 TFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474
           ++   RK        KT    A++ L  +I + Q+  LLG +G GK+T ++ L G+ P +
Sbjct: 486 SY---RK--------KTENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPS 534

Query: 475 GGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
            G A IYG  +     M   +K IG+CPQ
Sbjct: 535 DGFASIYGHRVSEIDEMFEARKMIGICPQ 563

May play a role in the processing of autolysosomes.

Mus musculus (taxid: 10090)

>sp|Q9FLT8|AB12A_ARATH ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 184/416 (44%), Gaps = 48/416 (11%)

Query: 100 LKEFAHPPGEIFSAVARI-GPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSA 158
           LKE      ++   +A + GP FF  V +  F   ++SLV EK+ +LR +M M GL D  
Sbjct: 309 LKEVPKEETKMNQDIASLLGPLFFTWVVLLLFPVILTSLVYEKQERLRIIMKMHGLGDGP 368

Query: 159 YWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSA 218
           YW+    +  T+ +L  + +V FG      +F  N +++ F+ +F++       AF+ S+
Sbjct: 369 YWMISYAYFLTISMLYVISLVGFGSAIGLKYFRRNDYSIQFVFYFIYSNLQISLAFLVSS 428

Query: 219 FISKSSSSTTIGFSVFIVGFLTQLVTAFGFPY---SDQFSNTYRTIWSLFPPNLLAEALQ 275
             SK  + T I    +I+ + T L+ +F F     +  F   +     L+P   L   L 
Sbjct: 429 IFSKVKTVTVIA---YILVYGTGLLGSFLFQKMIETQSFPEEWILAMELYPGFSLYRGLY 485

Query: 276 LLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPN 335
             S         G+ W   ++    +  C++++          +F+  I+A Y+D +  +
Sbjct: 486 EFSQYASRGN--GMKWQDLSDSGMGEVFCIMSVE---------WFLALIVAYYIDQVFTS 534

Query: 336 AAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEH----ITPDDEDVLEEENM 391
                K  F+FL          N  +  S      +V  ++     I  D  DV +E   
Sbjct: 535 G----KHPFFFLV---------NLFKSPSSLPRRPTVQRLDSKRVFIDMDKHDVTQERES 581

Query: 392 VKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFC 451
           V++   E       A+    L K +PG              P  A++GL+++++  + F 
Sbjct: 582 VQKLRNEG--STGHAILCDNLKKVYPGR---------DGNPPKMAVRGLYLSVSSGECFG 630

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507
           +LGPNGAGKT+ IS +TG+   + G AL+ G  I     M  +  S+GVCPQ  L 
Sbjct: 631 MLGPNGAGKTSFISMMTGLLKPSSGTALVQGLDI--CKDMNKVYTSMGVCPQHDLL 684

Arabidopsis thaliana (taxid: 3702)

>sp|O94911|ABCA8_HUMAN ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 172/384 (44%), Gaps = 54/384 (14%)

Query: 125 VAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMM 184
           ++   F++  S  VT +  +++ +MTMMGL DSA+WLSW       + + +LF+ +  ++
Sbjct: 231 ISFSSFIYYASVNVTRERKRMKALMTMMGLRDSAFWLSWGLLYAGFIFIMALFLAL--VI 288

Query: 185 FQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVT 244
               F + + F V+F LF L+ L++   AF+ S  + KS          F+ G +  L+T
Sbjct: 289 RSTQFIILSGFMVVFSLFLLYGLSLVALAFLMSILVKKS----------FLTGLVVFLLT 338

Query: 245 AFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSD---ATETPQDIGISWSRRAECAPND 301
            F       F++ YR +     P  L   L LLS         Q + + +   +   P+ 
Sbjct: 339 VFWGCLG--FTSLYRHL-----PASLEWILSLLSPFAFMLGMAQLLHLDYDLNSNAFPHP 391

Query: 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIE 361
           ++    I      L     ++  LAIY + I+PN  G R+   +FLK  +W+        
Sbjct: 392 SDGSNLIVATNFMLAFDTCLYLALAIYFEKILPNEYGHRRPPLFFLKSSFWS-------- 443

Query: 362 EGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPD--PNVAVQIRGLVKTFPGT 419
                         +H+  +DE  ++ +        ++ P+     A++IR + K + G 
Sbjct: 444 ---------QTQKTDHVALEDE--MDADPSFHDSFEQAPPEFQGKEAIRIRNVTKEYKG- 491

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
                     K     A+K L  +I + Q+  +LG +GAGK+T ++ L+G++  T G   
Sbjct: 492 ----------KPDKIEALKDLVFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVT 541

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQ 503
           IY   +     + N+ K  GVCPQ
Sbjct: 542 IYNNKLSEMADLENLSKLTGVCPQ 565

ATP-dependent lipophilic drug transporter.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
22331647	983	ABC transporter A family member 2 [Arabi	0.984	0.510	0.736	0.0
4741190	1011	ABC-type transport-like protein [Arabido	0.984	0.496	0.736	0.0
297819380	982	hypothetical protein ARALYDRAFT_485135 [	0.984	0.511	0.732	0.0
449440766	976	PREDICTED: ABC transporter A family memb	0.986	0.515	0.760	0.0
356516766	967	PREDICTED: ABC transporter A family memb	0.986	0.520	0.729	0.0
225456711	958	PREDICTED: ABC transporter A family memb	0.984	0.524	0.783	0.0
326501630	964	predicted protein [Hordeum vulgare subsp	0.980	0.518	0.701	0.0
357147716	965	PREDICTED: ABC transporter A family memb	0.980	0.518	0.692	0.0
147841474	909	hypothetical protein VITISV_033311 [Viti	0.970	0.544	0.771	0.0
225456709	950	PREDICTED: ABC transporter A family memb	0.968	0.52	0.771	0.0

>gi|22331647|ref|NP_190357.2| ABC transporter A family member 2 [Arabidopsis thaliana] gi|75327852|sp|Q84K47.1|AB2A_ARATH RecName: Full=ABC transporter A family member 2; Short=ABC transporter ABCA.2; Short=AtABCA2; AltName: Full=ABC2 homolog 1 gi|28393591|gb|AAO42215.1| putative ABC transporter protein [Arabidopsis thaliana] gi|28973103|gb|AAO63876.1| putative ABC transporter protein [Arabidopsis thaliana] gi|332644802|gb|AEE78323.1| ABC transporter A family member 2 [Arabidopsis thaliana]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/504 (73%), Positives = 430/504 (85%), Gaps = 2/504 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQ 503
           IYG SIRSSV M+NI+K IGVCPQ
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQ 613

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4741190|emb|CAB41856.1| ABC-type transport-like protein [Arabidopsis thaliana]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/504 (73%), Positives = 430/504 (85%), Gaps = 2/504 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQ 503
           IYG SIRSSV M+NI+K IGVCPQ
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQ 613

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819380|ref|XP_002877573.1| hypothetical protein ARALYDRAFT_485135 [Arabidopsis lyrata subsp. lyrata] gi|297323411|gb|EFH53832.1| hypothetical protein ARALYDRAFT_485135 [Arabidopsis lyrata subsp. lyrata]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/504 (73%), Positives = 428/504 (84%), Gaps = 2/504 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR IP+ KV SF     VD WL +NP+  PGALHFV+RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRPIPTEKVRSFVDPEAVDTWLMANPLLVPGALHFVERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKSSS+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSSSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R++WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSTGFPYAKKYSRRIRSLWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 DT-ECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
           D  +CVITINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDIDCVITINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC GSVPP++HITPDDEDVLEEE +VKQ   + + DPN+AVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCTGSVPPVDHITPDDEDVLEEETLVKQHSVDGLVDPNIAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
              G CCKC+KT P+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TNFG-CCKCKKTPPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQ 503
           IYG SIRSSV M+NI+K IGVCPQ
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQ 613

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440766|ref|XP_004138155.1| PREDICTED: ABC transporter A family member 2-like [Cucumis sativus] gi|449477295|ref|XP_004154984.1| PREDICTED: ABC transporter A family member 2-like [Cucumis sativus]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/505 (76%), Positives = 430/505 (85%), Gaps = 2/505 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M  NPGR+IP++KV+SF T AEVD WL++NPM CPGALHF +RN T ISYG+QTNST + 
Sbjct: 111 MAKNPGRSIPANKVLSFGTPAEVDKWLFNNPMTCPGALHFTERNGTVISYGLQTNSTAVA 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG+YEDP FKFQIPLQ+AAEREIAR  +GDPNFSWVV   EFAHP    FSAV  IGPT
Sbjct: 171 RRGQYEDPIFKFQIPLQIAAEREIARFFIGDPNFSWVVNFMEFAHPAVNKFSAVNTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYD+AYWLSWLTWEG   L++S+F V+
Sbjct: 231 FFLAIAMFGFVLQISSLITEKELKLRQAMTMMGLYDTAYWLSWLTWEGITTLIASIFTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFF  N+FAV+FL+FFLF+LNM GFAFM SAFISKSSSSTT+GFS+FIVGFLT
Sbjct: 291 FGMMFQFDFFSKNNFAVVFLVFFLFQLNMVGFAFMLSAFISKSSSSTTVGFSIFIVGFLT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPY+D  S  Y+ IWSLFPPNLLA+AL LLSDAT TP D GISWS R EC P 
Sbjct: 351 QLVTGFGFPYADGISKAYQIIWSLFPPNLLAKALSLLSDATATPSDPGISWSSRTECIPK 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
            +ECVITIN+IY WLV TFF+WF LAIY DNIIPNAAGVRKS FYFL+PGYWTGKGG+K+
Sbjct: 411 GSECVITINEIYSWLVGTFFLWFFLAIYFDNIIPNAAGVRKSAFYFLRPGYWTGKGGSKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           EEG I SC+GS+P +E ITPDDEDVLEEE+ VKQQ+   I DPNVAVQIRGL KT+PG  
Sbjct: 471 EEGGIFSCLGSLPVLEPITPDDEDVLEEESTVKQQLSNGIVDPNVAVQIRGLAKTYPGAW 530

Query: 421 KI--GCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478
           K+  GCCCKC KTSPYHA++GLWVN AKDQLFCLLGPNGAGKTT+ISCLTGITPVTGGDA
Sbjct: 531 KVKLGCCCKCTKTSPYHAVRGLWVNFAKDQLFCLLGPNGAGKTTSISCLTGITPVTGGDA 590

Query: 479 LIYGFSIRSSVSMTNIQKSIGVCPQ 503
           LIYG S+R SV M NI+K IGVCPQ
Sbjct: 591 LIYGNSVRDSVGMANIRKIIGVCPQ 615

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516766|ref|XP_003527064.1| PREDICTED: ABC transporter A family member 2-like [Glycine max]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/503 (72%), Positives = 417/503 (82%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP SKV SF+  +EVD WL SNPMRCPGALHF +RN T ISYG+QTNST ++
Sbjct: 112 MNNNPGRPIPPSKVKSFKEKSEVDAWLLSNPMRCPGALHFSERNDTVISYGLQTNSTSLQ 171

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG+YEDPT  FQ+PLQLAAEREIAR L+GD +FSW V L+EFAHP    FSAVA IGP 
Sbjct: 172 RRGKYEDPTASFQLPLQLAAEREIARYLIGDADFSWNVFLREFAHPSMNPFSAVASIGPA 231

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMF FV QISSLVTEKELKLRQ M MMGLYD AYW SWL WE  + +LSSL IV+
Sbjct: 232 FFLAIAMFNFVLQISSLVTEKELKLRQAMNMMGLYDFAYWFSWLIWEAVVTILSSLLIVL 291

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQF FFL+NSF VLF+LFFLFELNMTG AFM SAFI KSSS+TT+GFS+FIVGF+T
Sbjct: 292 FGMMFQFRFFLDNSFVVLFVLFFLFELNMTGLAFMISAFIRKSSSATTVGFSIFIVGFVT 351

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLV   GFPY+D FS T R +WSLFPPNL A+ +++LSDA  T +D GISWS+R ECA N
Sbjct: 352 QLVVQQGFPYTDSFSKTIRNVWSLFPPNLFAQGIKVLSDAVATSEDKGISWSKRGECALN 411

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D++CVITI+DIY WL ATFF+WF+LAIY DNIIPNA+GVRKS  YFL P YW GKGG K+
Sbjct: 412 DSDCVITIDDIYKWLAATFFLWFVLAIYFDNIIPNASGVRKSILYFLNPSYWMGKGGQKV 471

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           +EG +CSC+GS P  E  TPDDEDVLEEEN VKQQ+ E + D NVAVQIRGL KT+PGTR
Sbjct: 472 KEGGVCSCIGSAPRQEQSTPDDEDVLEEENKVKQQLTEGLLDANVAVQIRGLAKTYPGTR 531

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480
            IGCC KC++TSPY+A+KGLWVN AKDQLFCLLGPNGAGKTT I+CLTG+TPVT GDALI
Sbjct: 532 SIGCCFKCKRTSPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGVTPVTDGDALI 591

Query: 481 YGFSIRSSVSMTNIQKSIGVCPQ 503
           YG SIRSS  M+NI+K IGVCPQ
Sbjct: 592 YGHSIRSSTGMSNIRKLIGVCPQ 614

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456711|ref|XP_002274102.1| PREDICTED: ABC transporter A family member 2 isoform 1 [Vitis vinifera] gi|297734007|emb|CBI15254.3| unnamed protein product [Vitis vinifera]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/503 (78%), Positives = 442/503 (87%), Gaps = 1/503 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           EEG ICSC+GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 EEGGICSCIGSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 530

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GDALI
Sbjct: 531 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDALI 589

Query: 481 YGFSIRSSVSMTNIQKSIGVCPQ 503
           YG+SIRSSV M+NI++ IGVCPQ
Sbjct: 590 YGYSIRSSVGMSNIRRIIGVCPQ 612

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326501630|dbj|BAK02604.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/502 (70%), Positives = 416/502 (82%), Gaps = 2/502 (0%)

Query: 2   RNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEM 61
           RNNPGR IP+ KV+ FRT  EVD WL+ NPMRCPGALHF D N T +SYGIQTNSTP+  
Sbjct: 112 RNNPGRPIPAEKVLGFRTPDEVDAWLFENPMRCPGALHFQDINPTQMSYGIQTNSTPVAR 171

Query: 62  RGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTF 121
           RG YEDPTFKFQIPLQ+AAERE+AR ++GDPNFSW VG KEFAHP  E FS +A+ GPTF
Sbjct: 172 RGTYEDPTFKFQIPLQVAAEREMARLIIGDPNFSWTVGFKEFAHPATETFSTIAQAGPTF 231

Query: 122 FLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIF 181
           FLA+AMFGFVFQIS+LVTEKELKLRQ M++MGLY+SAYWLSWLTWE  L L+S+LF V+F
Sbjct: 232 FLAIAMFGFVFQISALVTEKELKLRQAMSIMGLYESAYWLSWLTWEALLTLISALFTVLF 291

Query: 182 GMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQ 241
           GMMFQFDFFLNNSF +LF LFFLF+LNM GFAFM S F++K++S+TT+GF++FI+GFLTQ
Sbjct: 292 GMMFQFDFFLNNSFGILFFLFFLFQLNMLGFAFMISTFVAKAASATTVGFAIFIIGFLTQ 351

Query: 242 LVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPND 301
           LVT FGFPYS+ +   YRTIWS FPPN+ A+AL +L  AT TP+D GISW++R  C   +
Sbjct: 352 LVTTFGFPYSNTYEAYYRTIWSFFPPNVFAQALNILGKATATPEDKGISWNQRTTCQSFE 411

Query: 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIE 361
           T+CVIT++DIYIWL++TFF+WFILAIY DNIIPN  GVRKS  YFL P YWTGKGG K+ 
Sbjct: 412 TDCVITVDDIYIWLISTFFLWFILAIYFDNIIPNVNGVRKSVLYFLTPSYWTGKGG-KMR 470

Query: 362 EGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRK 421
           EG +CSC GS    +  +P DEDVL EEN+VK+Q   +  DP VAVQIRGL KT+PG+  
Sbjct: 471 EGGLCSCFGSSHSADDASPTDEDVLTEENLVKEQAAGNEVDPGVAVQIRGLRKTYPGSFN 530

Query: 422 IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481
           +G CCKC+ T P+H++KGLWVN+ KDQLFCLLGPNGAGKTTTISCLTGITP+TGGDALIY
Sbjct: 531 MG-CCKCKTTKPFHSVKGLWVNLEKDQLFCLLGPNGAGKTTTISCLTGITPITGGDALIY 589

Query: 482 GFSIRSSVSMTNIQKSIGVCPQ 503
           G S+RSS  M NI++ IGVCPQ
Sbjct: 590 GHSVRSSAGMANIRRMIGVCPQ 611

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147716|ref|XP_003574455.1| PREDICTED: ABC transporter A family member 2-like [Brachypodium distachyon]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/501 (69%), Positives = 415/501 (82%), Gaps = 1/501 (0%)

Query: 3   NNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMR 62
           NNPGR IP+ KV+ F T  EVD WL+ NPMRCPGALHF D NAT ++YGIQTNSTP+  R
Sbjct: 113 NNPGRPIPADKVLGFGTPDEVDAWLFENPMRCPGALHFQDINATQLTYGIQTNSTPVARR 172

Query: 63  GRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFF 122
           G YEDPTFKFQIPLQ+AAERE+AR ++GDPNFSW VG KEFAHP  E FS +A+ GPTFF
Sbjct: 173 GTYEDPTFKFQIPLQVAAEREMARLIIGDPNFSWTVGFKEFAHPATETFSTIAQAGPTFF 232

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           LA+AMFGFVFQIS+LVTEKELKLRQ M++MGLY+S+YWLSWLTWE  L LLS+LF V+FG
Sbjct: 233 LAIAMFGFVFQISALVTEKELKLRQAMSIMGLYESSYWLSWLTWEAFLTLLSALFTVLFG 292

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
           MMFQFDFFLNN+F +LFLLFFLF+LNM  FAFM S F++K++S+TT+GF++FI+GFLTQL
Sbjct: 293 MMFQFDFFLNNNFGILFLLFFLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQL 352

Query: 243 VTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDT 302
           VT FGFPYS  +   YRTIWSLFPPN+ A+AL +L  AT TP+D GISW++R  C   +T
Sbjct: 353 VTTFGFPYSTSYQKYYRTIWSLFPPNVFAQALNILGKATATPEDKGISWNQRGTCQSFET 412

Query: 303 ECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEE 362
           +CVIT++DIY WL++TFFVWFILAIY DNIIPN  GVRKS FYFL P YWTGKGG K++E
Sbjct: 413 DCVITVDDIYKWLISTFFVWFILAIYFDNIIPNVNGVRKSVFYFLMPSYWTGKGGGKMQE 472

Query: 363 GSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKI 422
           G +CS  GS    +  TP DEDVL E+N+VK Q   +  DP +AVQ+RGL KT+PG+  +
Sbjct: 473 GGLCSFFGSNRSADDATPTDEDVLTEQNLVKGQAASNEVDPGIAVQVRGLRKTYPGSFSM 532

Query: 423 GCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           G CCKC+ T P+H++KGLWVN+ KDQLFCLLGPNGAGKTTTISCLTGITP+TGGDALIYG
Sbjct: 533 G-CCKCRTTKPFHSVKGLWVNLEKDQLFCLLGPNGAGKTTTISCLTGITPITGGDALIYG 591

Query: 483 FSIRSSVSMTNIQKSIGVCPQ 503
            S+RS+  M+NI++ IGVCPQ
Sbjct: 592 HSVRSTAGMSNIRRMIGVCPQ 612

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841474|emb|CAN62102.1| hypothetical protein VITISV_033311 [Vitis vinifera]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/504 (77%), Positives = 436/504 (86%), Gaps = 9/504 (1%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           E        GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 E--------GSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 522

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GDALI
Sbjct: 523 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDALI 581

Query: 481 YGFSIRSSVSMTNIQKSIGVCPQV 504
           YG+SIRSSV M+NI++ IGVCPQV
Sbjct: 582 YGYSIRSSVGMSNIRRIIGVCPQV 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456709|ref|XP_002274135.1| PREDICTED: ABC transporter A family member 2 isoform 2 [Vitis vinifera]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/503 (77%), Positives = 435/503 (86%), Gaps = 9/503 (1%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           E        GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 E--------GSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 522

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GDALI
Sbjct: 523 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDALI 581

Query: 481 YGFSIRSSVSMTNIQKSIGVCPQ 503
           YG+SIRSSV M+NI++ IGVCPQ
Sbjct: 582 YGYSIRSSVGMSNIRRIIGVCPQ 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2100367	983	ABCA2 "ATP-binding cassette A2	0.984	0.510	0.674	3.2e-191
UNIPROTKB|K7EPM3	917	ABCA5 "ATP-binding cassette su	0.156	0.087	0.388	1.3e-21
UNIPROTKB|E1BKP0	1562	ABCA5 "Uncharacterized protein	0.272	0.088	0.315	2.2e-21
ZFIN|ZDB-GENE-050517-5	1673	abca5 "ATP-binding cassette, s	0.152	0.046	0.358	2.6e-21
MGI|MGI:2386607	1642	Abca5 "ATP-binding cassette, s	0.147	0.045	0.373	2.9e-21
UNIPROTKB|Q8WWZ7	1642	ABCA5 "ATP-binding cassette su	0.156	0.048	0.388	3.1e-20
UNIPROTKB|E7ETD3	1643	ABCA5 "ATP-binding cassette su	0.156	0.048	0.388	3.1e-20
UNIPROTKB|K7GMQ1	1243	LOC100738613 "Uncharacterized	0.152	0.062	0.346	3.4e-20
DICTYBASE|DDB_G0291994	877	abcA1 "ABC transporter A famil	0.227	0.132	0.357	9.7e-20
UNIPROTKB|E2R172	1642	ABCA5 "Uncharacterized protein	0.176	0.054	0.336	1.1e-19

TAIR|locus:2100367 ABCA2 "ATP-binding cassette A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1853 (657.3 bits), Expect = 3.2e-191, P = 3.2e-191
 Identities = 340/504 (67%), Positives = 394/504 (78%)

Query:     1 MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
             M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct:   111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query:    61 MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
              RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct:   171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query:   121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
             FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct:   231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query:   181 FGMMFQFDXXXXXXXXXXXXXXXXXXXXMTGXXXXXXXXXXXXXXXXXXXXXXXIVGFLT 240
             FGMMFQFD                    + G                       +VGF+T
Sbjct:   291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query:   241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
             QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct:   351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query:   301 D-TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
             D T CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct:   411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query:   360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
             +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct:   471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query:   420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
              K GCC KC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct:   531 TKFGCC-KCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query:   480 IYGFSIRSSVSMTNIQKSIGVCPQ 503
             IYG SIRSSV M+NI+K IGVCPQ
Sbjct:   590 IYGNSIRSSVGMSNIRKMIGVCPQ 613

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

UNIPROTKB|K7EPM3 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGS 364
             +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+ K     EE S
Sbjct:   397 IITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS-KSKRNYEELS 451

Query:   365 ICSCVGSVPPMEHITPDDEDVLEEE 389
               +  G++   E I P   + + +E
Sbjct:   452 EGNVNGNISFSEIIEPVSSEFVGKE 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BKP0 ABCA5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
 Identities = 52/165 (31%), Positives = 80/165 (48%)

Query:   236 VGFLTQLVT-AFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRR 294
             VG +  LVT AFGF            +   FPP+L+     LLS   +    IGI+    
Sbjct:   327 VGIVEFLVTVAFGFV------GLLIVLMESFPPSLV----WLLSPFCQCTFLIGIAQVMH 376

Query:   295 AE------CAPNDTE--CVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYF 346
              E         N TE  C + I  + + L + F+   +LA+YLD ++P   G+R+S+FYF
Sbjct:   377 LEDVDEGALVSNLTEGPCPLIIAIMMLILNSIFYA--LLAVYLDQVVPGEFGLRRSSFYF 434

Query:   347 LKPGYWTGKGGN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEE 389
             LKP YW+    N  ++ EG++    G+V   E + P   + + +E
Sbjct:   435 LKPSYWSKSKRNYKELSEGNVN---GNVSFSEIVEPVSSEFIGKE 476

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-050517-5 abca5 "ATP-binding cassette, sub-family A (ABC1), member 5" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:   429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +K +   A++GL  +I + Q+  LLG +GAGK+T ++ L GI P T G A IYG  +   
Sbjct:   511 EKDTKVEALRGLTFDIYEGQITALLGHSGAGKSTLMNILCGICPPTEGTATIYGSPVAEI 570

Query:   489 VSMTNIQKSIGVCPQVTL 506
                  +++ +G+CPQ  +
Sbjct:   571 AEGAEMKQLVGICPQFNI 588

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:2386607 Abca5 "ATP-binding cassette, sub-family A (ABC1), member 5" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:   429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +KT    A++ L  +I + Q+  LLG +G GK+T ++ L G+ P + G A IYG  +   
Sbjct:   489 KKTENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEI 548

Query:   489 VSMTNIQKSIGVCPQ 503
               M   +K IG+CPQ
Sbjct:   549 DEMFEARKMIGICPQ 563

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005764 "lysosome" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IMP

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IMP

GO:0043691 "reverse cholesterol transport" evidence=IC

UNIPROTKB|Q8WWZ7 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGS 364
             +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+ K     EE S
Sbjct:   397 IITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS-KSKRNYEELS 451

Query:   365 ICSCVGSVPPMEHITPDDEDVLEEE 389
               +  G++   E I P   + + +E
Sbjct:   452 EGNVNGNISFSEIIEPVSSEFVGKE 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005764 "lysosome" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=ISS

GO:0033344 "cholesterol efflux" evidence=ISS

GO:0034375 "high-density lipoprotein particle remodeling" evidence=ISS

GO:0043691 "reverse cholesterol transport" evidence=IC

UNIPROTKB|E7ETD3 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGS 364
             +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+ K     EE S
Sbjct:   397 IITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS-KSKRNYEELS 451

Query:   365 ICSCVGSVPPMEHITPDDEDVLEEE 389
               +  G++   E I P   + + +E
Sbjct:   452 EGNVNGNISFSEIIEPVSSEFVGKE 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|K7GMQ1 LOC100738613 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query:   429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +K     A++ L  +I + Q+  LLG +G GK+T ++ L G+ P + G A IYG  +   
Sbjct:   489 KKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEI 548

Query:   489 VSMTNIQKSIGVCPQVTL 506
               M   +K IG+CPQ+ +
Sbjct:   549 DEMFEARKMIGICPQLDI 566

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

DICTYBASE|DDB_G0291994 abcA1 "ABC transporter A family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 9.7e-20, Sum P(3) = 9.7e-20
 Identities = 49/137 (35%), Positives = 75/137 (54%)

Query:   371 SVPPMEHI-TP--DDEDVLEEENMVKQQIRESIPDPNVA-VQIRGLVKTFPGTRKIGCCC 426
             S+  + HI TP  DDEDV       +  I ++    N A + I GL K++  T+      
Sbjct:   519 SLKKVRHIPTPYFDDEDV-------RAAITKAHDASNRAPLIICGLSKSY--TKLF---- 565

Query:   427 KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486
             + +KT   HA+K L +++ K  +   LG NG GK+TTI  LTG+   T GDAL+YG S+ 
Sbjct:   566 RPKKT--VHAVKYLSLSVEKGTILGFLGSNGCGKSTTIGMLTGLLEPTAGDALVYGHSVI 623

Query:   487 SSVSMTNIQKSIGVCPQ 503
             S+++   +++   V PQ
Sbjct:   624 SNIAA--VRRITSVVPQ 638

GO:0005615 "extracellular space" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E2R172 ABCA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
 Identities = 34/101 (33%), Positives = 54/101 (53%)

Query:   406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
             A++I G+ KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++
Sbjct:   477 AIRISGIQKTY---RKKG--------ENVEALRSLSFDIYEGQITALLGHSGTGKSTLMN 525

Query:   466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506
              L G+ P + G A IYG  +     M   +K IG+CPQ+ +
Sbjct:   526 ILCGLCPPSDGFASIYGHRVSEIDEMFEARKIIGICPQLDI 566

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84K47	AB2A_ARATH	No assigned EC number	0.7361	0.9843	0.5106	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-28
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-28
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	9e-17
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-16
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-15
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-13
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	1e-12
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	3e-11
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-11
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	6e-11
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-10
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-09
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	3e-09
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	6e-09
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	8e-09
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	1e-08
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-08
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	2e-08
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	3e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-08
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	7e-08
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-07
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-07
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-07
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-07
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-07
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-07
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-07
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	3e-07
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	3e-07
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	4e-07
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	8e-07
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-06
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-06
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-06
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-06
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-06
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-06
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	2e-06
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-06
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	3e-06
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-06
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-06
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-06
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	4e-06
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	4e-06
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	6e-06
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	6e-06
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	7e-06
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	8e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-05
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-05
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-05
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-05
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-05
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-05
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-05
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	3e-05
COG4988	559	COG4988, CydD, ABC-type transport system involved	3e-05
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	4e-05
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	6e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	8e-05
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	8e-05
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	9e-05
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	9e-05
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-04
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-04
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-04
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-04
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-04
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-04
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-04
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-04
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-04
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-04
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	3e-04
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	4e-04
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	4e-04
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	4e-04
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	5e-04
COG4987	573	COG4987, CydC, ABC-type transport system involved	5e-04
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	5e-04
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	5e-04
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	5e-04
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	6e-04
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	6e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	7e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	7e-04
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	8e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	0.001
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	0.001
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	0.001
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	0.001
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	0.001
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	0.001
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	0.001
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	0.002
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	0.002
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	0.002
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	0.003
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	0.003
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.003
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.003
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	0.003
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	0.003
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	0.004
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	0.004
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	0.004
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	0.004

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  120 bits (302), Expect = 1e-28
 Identities = 101/397 (25%), Positives = 173/397 (43%), Gaps = 33/397 (8%)

Query: 116  RIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSS 175
            R  P F +   ++     + S+V EKEL+L++ +   G+ ++  W +W     +++ +S 
Sbjct: 653  RCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSI 712

Query: 176  LFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFI 235
              + IF M  +     ++ F +LFL    F        F+ S F SK+S +      ++ 
Sbjct: 713  FLLTIFIMHGRI-LHYSDPF-ILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYF 770

Query: 236  VGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRA 295
              +L  ++    F + D+ +   +T  SL  P       + L    E  Q +G+ WS   
Sbjct: 771  TLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEE--QGLGLQWSNIG 825

Query: 296  ECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGK 355
                   E    ++   + L A   ++ +LA YLD + P   G     ++ L+  YW G 
Sbjct: 826  NSPLEGDEFSFLLSMKMMLLDAA--LYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGG 883

Query: 356  GGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKT 415
             G    E        ++   E +T + ED    E +        +P     V ++ LVK 
Sbjct: 884  EGCSTREER------ALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVKNLVKI 937

Query: 416  F-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474
            F P  R               A+  L +   ++Q+   LG NGAGKTTT+S LTG+ P T
Sbjct: 938  FEPSGRP--------------AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT 983

Query: 475  GGDALIYGFSIRSSVSMTNIQKSIGVCPQVT-LFSYL 510
             G  L+ G  I +++    +++S+G+CPQ   LF +L
Sbjct: 984  SGTVLVGGKDIETNLDA--VRQSLGMCPQHNILFHHL 1018

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  112 bits (283), Expect = 1e-28
 Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 16/105 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +QIR L KT+    K              A+  L +N+ K ++F LLG NGAGKTTT+  
Sbjct: 1   LQIRNLTKTYKKGTK-------------PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKM 47

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV-TLFSYL 510
           LTG    T G A I G+SIR+       ++S+G CPQ   LF  L
Sbjct: 48  LTGELRPTSGTAYINGYSIRT--DRKAARQSLGYCPQFDALFDEL 90

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 79.0 bits (195), Expect = 9e-17
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 17/97 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  LVK +                   A++G+   + + ++F LLGPNGAGKTTTI  
Sbjct: 1   IEVENLVKKYGDFE---------------AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKM 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           LT +   T G A + G  +        +++ IG+  Q
Sbjct: 46  LTTLLKPTSGRATVAGHDVVREP--REVRRRIGIVFQ 80

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 18/105 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R L K +                   A+  + + + K +++ LLGPNGAGKTT I  
Sbjct: 1   IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKI 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-VTLFSYL 510
           + G+     G+  + G  I+       +++ IG  P+  +L+  L
Sbjct: 46  ILGLLKPDSGEIKVLGKDIKKEP--EEVKRRIGYLPEEPSLYENL 88

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            +++R L K + G +               A+ G+   +   ++F LLGPNGAGKTT + 
Sbjct: 4   VIEVRNLTKKYGGDKT--------------ALDGVSFEVEPGEIFGLLGPNGAGKTTLLK 49

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-VTLFSYL 510
            L G+   T G+ L+ G+ +        +++ IG  PQ  +L+  L
Sbjct: 50  ILAGLLKPTSGEILVLGYDVVK--EPAKVRRRIGYVPQEPSLYPEL 93

Length = 293

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 72.0 bits (176), Expect = 5e-13
 Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 20/131 (15%)

Query: 373  PPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTS 432
            P  E I  +D+DV EE    +Q+I       ++ +++  L K + GT           +S
Sbjct: 1909 PAKEPIFDEDDDVAEE----RQRIISGGNKTDI-LRLNELTKVYSGT-----------SS 1952

Query: 433  PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMT 492
            P  A+  L V +   + F LLG NGAGKTTT   LTG T VT GDA + G SI +++S  
Sbjct: 1953 P--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS-- 2008

Query: 493  NIQKSIGVCPQ 503
            ++ +++G CPQ
Sbjct: 2009 DVHQNMGYCPQ 2019

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 36/217 (16%), Positives = 75/217 (34%), Gaps = 30/217 (13%)

Query: 112 SAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLV 171
                +       + + G +    S+V EKE ++++ + + G+    Y L  +  +  + 
Sbjct: 92  GYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVG 151

Query: 172 LLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGF 231
           L+  L I++   +F       N    L LLF L+ L       +  +    S ++  +  
Sbjct: 152 LIQLLIILLL--LFGLGIPFGNLLL-LLLLFLLYGLAYIALGALLGSLFKNSEAAILV-- 206

Query: 232 SVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISW 291
            + I+  L        FP  +   +  + I+S+ P     + L  +        +I +S 
Sbjct: 207 -ISILILLLSGFFGGLFPLPN-MPSFLQWIFSIIPFFAPIDGLLRI--IYGDLAEILLSL 262

Query: 292 SRRAECAPNDTECVITINDIYIWLVATFFVWFILAIY 328
                                I L+    V  +LA+ 
Sbjct: 263 ---------------------IILLLFGVVLLLLALL 278

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 15/76 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   L KT+ G +                +  + +++ K +++  LGPNGAGKTTT+  
Sbjct: 1   LKTNDLTKTY-GKK--------------RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKI 45

Query: 467 LTGITPVTGGDALIYG 482
           + G+     G+    G
Sbjct: 46  ILGLIKPDSGEITFDG 61

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
            A+  + + +   ++  L+GPNG+GK+T +  + G+   T G+ LI G  I + + +  +
Sbjct: 13  TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-AKLPLEEL 71

Query: 495 QKSIGVCPQ 503
           ++ IG  PQ
Sbjct: 72  RRRIGYVPQ 80

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+ G+   + + ++F  LGPNGAGKTTTI  LT +   T G A + G+ +        ++
Sbjct: 8   AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR--KVR 65

Query: 496 KSIGVCPQ 503
           +SIG+ PQ
Sbjct: 66  RSIGIVPQ 73

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 60.1 bits (147), Expect = 1e-10
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  L ++I   ++  +LGPNGAGK+T +  L G+   + G+ L+ G  + +S+S   + +
Sbjct: 15  LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-ASLSPKELAR 73

Query: 497 SIGVCPQV 504
            I   PQ 
Sbjct: 74  KIAYVPQA 81

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++RGL K F G                 A+  +  ++   ++  L+GPNGAGKTT  + +
Sbjct: 2   EVRGLTKRFGGL---------------VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLI 46

Query: 468 TGITPVTGG 476
           +G    T G
Sbjct: 47  SGFLRPTSG 55

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 18/69 (26%), Positives = 32/69 (46%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
            A++G+ + + + ++  LLG NGAGKTT +  + G+     G  +  G  I         
Sbjct: 17  QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76

Query: 495 QKSIGVCPQ 503
           +  I   P+
Sbjct: 77  RLGIAYVPE 85

Length = 237

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  L  +I K ++  +LGPNG+GK+T + CL G+     G+ L+ G  I S      + K
Sbjct: 18  LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK-ELAK 76

Query: 497 SIGVCPQVT 505
            +   PQ  
Sbjct: 77  KLAYVPQSP 85

Length = 258

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +    L K F   +K              A+ G+   +   ++  LLGPNGAGKTTT+  
Sbjct: 2   ITADALTKRFRDVKK-----------TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRM 50

Query: 467 LTGITPVTGGDALIYGF 483
           L G+     G A + GF
Sbjct: 51  LAGLLEPDAGFATVDGF 67

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 55.1 bits (134), Expect = 1e-08
 Identities = 19/70 (27%), Positives = 31/70 (44%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
              + G+ + + + ++  LLG NGAGKTT +  + G+ P   G     G  I        
Sbjct: 13  SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72

Query: 494 IQKSIGVCPQ 503
            +  IG  P+
Sbjct: 73  ARAGIGYVPE 82

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
           P  A++IR + K+F                   A+  + ++I K +   LLGP+G GKTT
Sbjct: 2   PKPALEIRNVSKSFGDFT---------------AVDDISLDIKKGEFVTLLGPSGCGKTT 46

Query: 463 TISCLTGITPVTGGDALIYGFSI 485
            +  + G    + G+ L+ G  I
Sbjct: 47  LLRMIAGFEQPSSGEILLDGEDI 69

Length = 352

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           ++ LLGPNGAGKTT +  L  +TP + G   I G  +        +++ IG  PQ
Sbjct: 27  MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK--QPQKLRRRIGYLPQ 79

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 19/105 (18%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++GL KT+   R               A+  L + +   +   LLGP+G GKTT +  
Sbjct: 1   LELKGLSKTYGSVR---------------ALDDLSLTVEPGEFLALLGPSGCGKTTLLRL 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG-VCPQVTLFSYL 510
           + G+     G+ LI G   R    +   +++IG V     LF +L
Sbjct: 46  IAGLERPDSGEILIDG---RDVTGVPPERRNIGMVFQDYALFPHL 87

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
              A+  +  ++ K ++F LLGPNGAGKTTTI  + GI     G+ L  G
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483
           A+KG+   I K ++   +GPNGAGKTTT+  L+G+   T G+  + G 
Sbjct: 36  ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL 83

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 15/76 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++RG+ K F G                 A+ G+ +++ + ++  LLG NGAGK+T +  
Sbjct: 1   LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKI 45

Query: 467 LTGITPVTGGDALIYG 482
           L+G+     G+ L+ G
Sbjct: 46  LSGLYKPDSGEILVDG 61

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ + K+F                    +K + ++I   +   LLGP+G GK+T + 
Sbjct: 3   ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLR 47

Query: 466 CLTGITPVTGGDALIYG 482
            + G+   T G+ LI G
Sbjct: 48  MIAGLEEPTSGEILIDG 64

Length = 338

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++  L KT+P  +               A+K + ++I   +   L+GP+GAGK+T + CL
Sbjct: 2   EVENLSKTYPNGK--------------KALKDVSLSINPGEFVALIGPSGAGKSTLLRCL 47

Query: 468 TGITPVTGGDALIYGFSIRS 487
            G+   T G  LI G  I  
Sbjct: 48  NGLVEPTSGSVLIDGTDINK 67

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             +K +  +I   +   ++GP GAGKTT I+ L        G  LI G  IR  +S  ++
Sbjct: 17  PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DISRKSL 75

Query: 495 QKSIGVCPQ-VTLFS 508
           +  IGV  Q   LFS
Sbjct: 76  RSMIGVVLQDTFLFS 90

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 16/96 (16%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ L KT+PG  +              A+K + + I + ++  ++GP+GAGK+T + 
Sbjct: 3   MIEVKNLSKTYPGGHQ--------------ALKDVNLEINQGEMVAIIGPSGAGKSTLLR 48

Query: 466 CLTGITPVTGGDALIYGFSI--RSSVSMTNIQKSIG 499
            L G+   T G+ L  G  I       +  +++ IG
Sbjct: 49  SLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84

Length = 258

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 15/76 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  + K F                   A+  L ++IA  +   LLGP+G GKTTT+  
Sbjct: 1   VELENVTKRFGNV---------------TALDDLNLDIADGEFVVLLGPSGCGKTTTLRM 45

Query: 467 LTGITPVTGGDALIYG 482
           + G+   T G   I G
Sbjct: 46  IAGLEEPTSGRIYIGG 61

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 11/81 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ L KT+ G  +              A+KG+ ++I K +   ++GP+G+GK+T ++ 
Sbjct: 1   IELKNLSKTYGGGGE-----------KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNI 49

Query: 467 LTGITPVTGGDALIYGFSIRS 487
           L G+   T G+  + G  I  
Sbjct: 50  LGGLDRPTSGEVRVDGTDISK 70

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
           H ++G+ + + K ++ C+LG NG GKTT +  L G+ PV  G   + G  I         
Sbjct: 14  HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73

Query: 495 QKSIGVCPQ 503
           +  I   PQ
Sbjct: 74  RAGIAYVPQ 82

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486
           + A+  L + +   +L  ++GPNGAGKTT +  +TG T    G  L  G  + 
Sbjct: 15  FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT 67

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
           +  ++ +   +   +   ++GPNGAGK+T +  + G+   T G   ++G  +        
Sbjct: 12  HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------K 65

Query: 494 IQKSIGVCPQVTLFS 508
            +K IG  PQ     
Sbjct: 66  ERKRIGYVPQRRSID 80

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
           A+  + + + + ++  L+GPNGAGKTT  +CLTG    TGG  L+ G  I
Sbjct: 20  AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69

Length = 255

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R + KT+ G                 A++ + +++ + +   L+GP+G GK+T +  
Sbjct: 1   LEVRNVSKTYGG-----------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRI 49

Query: 467 LTGITPVTGGDALIYGFSIR 486
           + G+   T G+ L+ G  + 
Sbjct: 50  IAGLERPTSGEVLVDGEPVT 69

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I+ L K+F                 +H +KG+ + + K ++  ++GP+G+GK+T + C
Sbjct: 1   IEIKNLHKSF---------------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRC 45

Query: 467 LTGITPVTGGDALIYGFSI-RSSVSMTNIQKSIG-VCPQVTLFSYL 510
           +  +     G  +I G  +     ++  +++ +G V  Q  LF +L
Sbjct: 46  INLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++RGL K F G                 A+  + + +   ++  L+GPNGAGKTT  + +
Sbjct: 6   EVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLI 50

Query: 468 TGITPVTGG 476
           TG    + G
Sbjct: 51  TGFYKPSSG 59

Length = 250

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468
              L K + G RK+              + G+ +++ + ++  LLGPNGAGKTTT   + 
Sbjct: 3   AENLSKRY-GKRKV--------------VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV 47

Query: 469 GITPVTGGDALIYGFSIRSSVSM-TNIQKSIGVCPQ 503
           G+     G  L+ G  I + + M    +  IG  PQ
Sbjct: 48  GLVKPDSGKILLDGQDI-TKLPMHKRARLGIGYLPQ 82

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+  +   +   +   LLGPNGAGK+T  S LT +     G   + G  +R +       
Sbjct: 16  ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR--AAL 73

Query: 496 KSIGVCPQ 503
             +GV  Q
Sbjct: 74  ARLGVVFQ 81

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483
           K     A++ +   I K ++   LG NGAGK+TT+  LTG+   T G   + G 
Sbjct: 33  KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86

Length = 325

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K + + I   +   ++GP+G+GK+T +  L  +   T G+ LI G  +R  + + +++
Sbjct: 17  VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR-DLDLESLR 75

Query: 496 KSIGVCPQ-VTLFS 508
           K+I   PQ   LFS
Sbjct: 76  KNIAYVPQDPFLFS 89

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
            A+++RG+ K FPG                 A   + +++ K ++  LLG NGAGK+T +
Sbjct: 3   PALEMRGITKRFPGV---------------VANDDVSLSVKKGEIHALLGENGAGKSTLM 47

Query: 465 SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG 499
             L G+     G+  + G  +R       I+  IG
Sbjct: 48  KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82

Length = 501

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           + A+  L  ++   +L  L+GPNGAGKTT +  +TG T    G+ L  G
Sbjct: 18  FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66

Length = 249

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 15/83 (18%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
               +    L K++   RK+              +  + + +   ++  LLGPNGAGKTT
Sbjct: 1   DMSTLVAENLAKSY-KKRKV--------------VNDVSLEVNSGEIVGLLGPNGAGKTT 45

Query: 463 TISCLTGITPVTGGDALIYGFSI 485
           T   + G+     G  L+    I
Sbjct: 46  TFYMIVGLVRPDSGKILLDDEDI 68

Length = 243

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+K + + I K +   L+GPNG+GK+T +  L G+   T G+ L+ G    S  S+  ++
Sbjct: 19  ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78

Query: 496 KSIGVCPQ 503
           + +G+  Q
Sbjct: 79  QKVGLVFQ 86

Length = 235

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 20/98 (20%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           A++I G+ K+F G                 A+  +   +   ++F LLGPNGAGKTTT  
Sbjct: 2   ALEIEGVTKSF-GD--------------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFR 46

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
            + G+   T G+    G  +        I+  IG  P+
Sbjct: 47  MILGLLEPTEGEITWNGGPLS-----QEIKNRIGYLPE 79

Length = 300

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
            A+  + + + K+ ++ LLGPNGAGK+T +  +TGI   T G+ +  G
Sbjct: 14  TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
            A+ G+ ++I + + F LLGP+G GKTT +  + G    T G+ L+ G  I
Sbjct: 14  VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I+ L K+F                    +KG+ +++ K ++  ++GP+G+GK+T + C
Sbjct: 3   IEIKNLSKSF---------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRC 47

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           L G+     G   + G  +     +  +++ +G+  Q
Sbjct: 48  LNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQ 84

Length = 240

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  L K +P  +               A+K + +NI   +   ++GP+GAGK+T + C
Sbjct: 2   LEVENLSKVYPNGK--------------QALKNINLNINPGEFVAIIGPSGAGKSTLLRC 47

Query: 467 LTGITPVTGGDALIYGFSIR 486
           +  +   + G  L+ G  I 
Sbjct: 48  INRLVEPSSGSILLEGTDIT 67

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR-SSVSMTN 493
           HA+KG+ +NI K ++  +LG NGAGK+T    L GI   + G  L  G  I  S   +  
Sbjct: 20  HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79

Query: 494 IQKSIGVC---PQVTLFS 508
           +++S+G+    P   LFS
Sbjct: 80  LRESVGMVFQDPDNQLFS 97

Length = 283

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + K F  T                A+K + +++ K ++F ++G +GAGK+T I C
Sbjct: 2   IELKNVSKVFGDTGGKV-----------TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRC 50

Query: 467 LTGITPVTGGDALIYGFSI--RSSVSMTNIQKSIG-VCPQVTLFS 508
           + G+   T G  L+ G  +   S   +   ++ IG +     L S
Sbjct: 51  INGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 17/101 (16%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
             VA+ + G+ K++    K               + GL   +A  + F LLGPNGAGK+T
Sbjct: 38  STVAIDLAGVSKSYGD--KA-------------VVNGLSFTVASGECFGLLGPNGAGKST 82

Query: 463 TISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
               + G+T    G   + G  + +   +   +  IGV PQ
Sbjct: 83  IARMILGMTSPDAGKITVLGVPVPARARLA--RARIGVVPQ 121

Length = 340

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 16/102 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   + K + G +K              A+  L + IAK +   L+GP+G+GKTTT+  
Sbjct: 1   IEFENVTKRYGGGKK--------------AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKM 46

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG-VCPQVTLF 507
           +  +   T G+  I G  IR       +++ IG V  Q+ LF
Sbjct: 47  INRLIEPTSGEIFIDGEDIR-EQDPVELRRKIGYVIQQIGLF 87

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 15/84 (17%)

Query: 399 SIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGA 458
                   +++RG+ K+F G                 A+ G+ + +   ++  LLG NGA
Sbjct: 1   MTMSTPPLLELRGISKSFGGV---------------KALDGVSLTVRPGEVHALLGENGA 45

Query: 459 GKTTTISCLTGITPVTGGDALIYG 482
           GK+T +  L+G+ P   G+ LI G
Sbjct: 46  GKSTLMKILSGVYPPDSGEILIDG 69

Length = 500

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 397 RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPN 456
           R         + +R L K +   + +      ++     A+  +  ++ + +   L+G +
Sbjct: 271 RRGPLRAEPLLSVRNLSKRYGSRKGLFV----RERGEVKAVDDVSFDLREGETLGLVGES 326

Query: 457 GAGKTTTISCLTGITPVTGGDALIYG 482
           G+GK+T    L G+ P + G  +  G
Sbjct: 327 GSGKSTLARILAGLLPPSSGSIIFDG 352

Length = 539

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           + GL  ++ + + F LLGPNGAGKTTT+  L G+T    G   + G  + S       ++
Sbjct: 23  VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA--RQ 80

Query: 497 SIGVCPQ 503
            +GV PQ
Sbjct: 81  RVGVVPQ 87

Length = 306

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN-- 493
           A+  +     K ++   LGPNGAGK+TT+  +TG  P   G   + G  +     + N  
Sbjct: 17  ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-----LQNPK 71

Query: 494 -IQKSIGVCPQ 503
            +Q++IG  P+
Sbjct: 72  EVQRNIGYLPE 82

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR-SSVSMT 492
             A+KG+     K ++  LLGPNGAGK+T      GI   T G+ LI G  I+    S+ 
Sbjct: 15  TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLL 74

Query: 493 NIQKSIGVCPQ 503
            ++K++G+  Q
Sbjct: 75  EVRKTVGIVFQ 85

Length = 275

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+  + + I K +   ++GPNG+GK+T +  L G+   T G+ L+ G  +    S+  ++
Sbjct: 16  ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL-SLKELR 74

Query: 496 KSIGV 500
           + +G+
Sbjct: 75  RKVGL 79

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 385 VLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI 444
           VL+               P  +++  G+   +PG R               A++ +   +
Sbjct: 300 VLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRP--------------ALRPVSFTV 345

Query: 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
              +   L+GP+GAGK+T ++ L G    T G   + G
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 15/76 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + K +                    +  + +NI   ++  LLGP+G+GK+T + C
Sbjct: 1   LELKNVSKRYGQK---------------TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRC 45

Query: 467 LTGITPVTGGDALIYG 482
           + G+     G  LI G
Sbjct: 46  IAGLEEPDSGSILIDG 61

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505
           K +L  LLGPNGAGKTT +  + G+ P   G   + G S           + IG  PQ  
Sbjct: 5   KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG------WRHIGYVPQRH 58

Query: 506 LFSY 509
            F++
Sbjct: 59  EFAW 62

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 383 EDVLEEENMVKQQ--IRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGL 440
             +LE            E   +P + + +  L   +P  +               A+  L
Sbjct: 295 FTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKP--------------ALSDL 340

Query: 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGV 500
            + I   QL  L+G +GAGK+T ++ L G    T G+  + G  +R  +S    +K I  
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR-DLSPEAWRKQISW 399

Query: 501 CPQ 503
             Q
Sbjct: 400 VSQ 402

Length = 559

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVC 501
           +   + + ++GPNGAGKTT +S LTG  P + GD  + G       ++  ++K IG+ 
Sbjct: 54  VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111

Length = 257

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + KTF  T           T    A+  + + I K ++F ++G +GAGK+T +  
Sbjct: 2   IELENVSKTFGQTG----------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRL 51

Query: 467 LTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIGVCPQ 503
           +  +   T G   + G  +   S   +  +++ IG+  Q
Sbjct: 52  INLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQ 90

Length = 339

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+K +   I + +   +LG NG+GK+T    LTG+     G+  I G +I S  ++  I+
Sbjct: 24  ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI-SKENLKEIR 82

Query: 496 KSIGVCPQ 503
           K IG+  Q
Sbjct: 83  KKIGIIFQ 90

Length = 271

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 43.6 bits (104), Expect = 8e-05
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ L  +FP                  A+  +  +I K +   L+G +G+GK+T    
Sbjct: 2   LEVKNLSVSFPT-----------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARA 50

Query: 467 LTGITPVTGGDALIYG 482
           + G+   T G  +  G
Sbjct: 51  ILGLLKPTSGSIIFDG 66

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-VTLFS 508
           ++GP+G+GK+T    + G+   T G   + G  I S      +   +G  PQ   LFS
Sbjct: 33  IIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI-SQWDPNELGDHVGYLPQDDELFS 89

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI-------RSS 488
           A+ GL + IA+     ++G NGAGK+T ++ + G    T G  LI G  +       R++
Sbjct: 21  ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80

Query: 489 VSMTNIQKSI-GVCPQVTLF 507
           +     Q  + G  P++T+ 
Sbjct: 81  LLARVFQDPLAGTAPELTIE 100

Length = 263

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-SVSMTNIQ 495
           +  + +NI + ++  ++GP+G+GK+T + C+  +  +T GD ++ G  +    V    I+
Sbjct: 17  LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76

Query: 496 KSIG-VCPQVTLFSYL 510
           +  G V  Q  LF +L
Sbjct: 77  QEAGMVFQQFYLFPHL 92

Length = 240

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
               ++++ L K FP  +  G      K     A+ G+  +I + +   L+G +G GK+T
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFG------KKRYVKAVDGVSFSIKEGETLGLVGESGCGKST 54

Query: 463 TISCLTGITPVTGG 476
               + G+   T G
Sbjct: 55  LGRLILGLEEPTSG 68

Length = 268

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           +LGP+G+GK+T ++ L G+     G+  + G  + SS+    +++ + VC Q
Sbjct: 366 ILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPV-SSLDQDEVRRRVSVCAQ 416

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             ++ + +++ K ++  L+GPNGAGK+T +  + G+   + G+  I+G  +R        
Sbjct: 18  PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---- 73

Query: 495 QKSIGVCPQVTLFSY 509
           +  IG  PQ +    
Sbjct: 74  RLRIGYVPQKSSVDR 88

Length = 254

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 21/99 (21%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
             ++I G+ K+F G                  ++ + +++ K +   +LGP+G GK+T +
Sbjct: 2   ALLEIEGVSKSFGG---------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLL 46

Query: 465 SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
             + G+   T G+ L+ G  +            IG   Q
Sbjct: 47  RLIAGLEKPTSGEVLLDGRPVTG------PGPDIGYVFQ 79

Length = 248

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 432 SPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM 491
           S   A++ +     + ++  LLG NGAGKTT +  +  +     G   I G         
Sbjct: 13  SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT-VRDPS 71

Query: 492 TNIQKSIGVCP 502
              +K IGV  
Sbjct: 72  FVRRK-IGVLF 81

Length = 245

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           NVA+ + G+ K++    K+              +  L   IA+ + F LLGPNGAGK+T 
Sbjct: 2   NVAIDLVGVSKSYGD--KV-------------VVNDLSFTIARGECFGLLGPNGAGKSTI 46

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
              L G+     G   + G  + S   +  +   IGV PQ
Sbjct: 47  ARMLLGMISPDRGKITVLGEPVPSRARLARVA--IGVVPQ 84

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
            +KGL     + ++  LLG NGAGK+T +  L G+     G  LI G
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG 53

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+  + + I + +   L+GP+G+GKTTT+  +  +   T G+ LI G  I S +    ++
Sbjct: 16  AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI-SDLDPVELR 74

Query: 496 KSIG-VCPQVTLFSYL 510
           + IG V  Q+ LF +L
Sbjct: 75  RKIGYVIQQIGLFPHL 90

Length = 309

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           +LGPNGAGK+T +  L+G      G+  + G
Sbjct: 33  ILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63

Length = 258

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 407 VQIRGLVKTFP-------GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           +++  + K++P         +K+G   +  +   + A+K +   + + +   L+G NGAG
Sbjct: 1   IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60

Query: 460 KTTTISCLTGITPVTGGDALIYG 482
           K+T +  L GI P   G   + G
Sbjct: 61  KSTLLRLLAGIYPPDSGTVTVRG 83

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 18/112 (16%)

Query: 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKT 461
            P   +++RG+ K+F G R I              + G+ +++ + ++  +LG +G+GK+
Sbjct: 4   SPEPLIEVRGVTKSF-GDRVI--------------LDGVDLDVPRGEILAILGGSGSGKS 48

Query: 462 TTISCLTGITPVTGGDALIYGFSIRSSVSMTN--IQKSIGVCPQV-TLFSYL 510
           T +  + G+     G+ LI G  I          I+K +GV  Q   LFS L
Sbjct: 49  TLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL 100

Length = 263

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 17/99 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++RGL K+F G R +              +KG+ +++ + ++  ++GP+G+GK+T +  
Sbjct: 1   IELRGLTKSF-GGRTV--------------LKGVDLDVRRGEILAIIGPSGSGKSTLLRL 45

Query: 467 LTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIGVCPQ 503
           + G+     G+ LI G  I   S   +  +++ +G+  Q
Sbjct: 46  IVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQ 84

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 23/95 (24%)

Query: 396 IRESIPDPNVAVQ--------IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKD 447
           + ++IP P    +        IR L K+F G                HA+  + + I K 
Sbjct: 1   MNDAIPRPQAKTRKALTPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKG 45

Query: 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           ++F LLG +G GK+T +  L G    T G  ++ G
Sbjct: 46  EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG 80

Length = 377

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            + +R L   + G               +HA+  + + I + +   ++G +G+GK+T   
Sbjct: 3   LLSVRNLSIVYGG-----------GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLAR 51

Query: 466 CLTGITPVTGGDALIYG 482
            L G+   + G  L+ G
Sbjct: 52  LLAGLEKPSSGSILLDG 68

Length = 252

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 448 QLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505
            L  L+G +GAGKTT +  L G     V  G+ LI G  +       N Q+S G   Q  
Sbjct: 34  TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK-----NFQRSTGYVEQQD 88

Query: 506 LFS 508
           + S
Sbjct: 89  VHS 91

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
           + ++        E       A+++R +  T+PG                 A+K   + +A
Sbjct: 316 ILDQKPEVTFPDEQTATTGQALELRNVSFTYPG-------------QQTKALKNFNLTLA 362

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-V 504
           + +   +LG +G+GK+T +  L G      G   + G  I  S+    ++++I V  Q V
Sbjct: 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA-SLDEQALRETISVLTQRV 421

Query: 505 TLFS 508
            LFS
Sbjct: 422 HLFS 425

Length = 573

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
            A+KGL ++I +     LLGPNGAGK+T +  L GI     G   + G  +
Sbjct: 19  KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69

Length = 274

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +K +   I   +   ++GP+G+GK+T +  L     V+ G  LI G  IR  V++ ++++
Sbjct: 17  LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR-EVTLDSLRR 75

Query: 497 SIGVCPQ-VTLF 507
           +IGV PQ   LF
Sbjct: 76  AIGVVPQDTVLF 87

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 112 SAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYD-SAYWLSWLTWEGTL 170
             + R G  FF  +          S V  +E  + +      LY  SAY L+ +  E  +
Sbjct: 48  GGLNRPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPI 107

Query: 171 VLLSS-LFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTI 229
            LL + +F++I   M        + F +  L+  L  L  +G     +A       ++ I
Sbjct: 108 SLLQAIIFLLIVYFMVGLPV---SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQI 164

Query: 230 GFSVFIVGFL 239
           G  + +   L
Sbjct: 165 GPLLLLPLLL 174

Length = 210

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVC 501
           + +   ++  LLGPNGAGKTTT   + GI P   G+ +I    I         ++ IG  
Sbjct: 24  LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83

Query: 502 PQ 503
           PQ
Sbjct: 84  PQ 85

Length = 241

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K +  +I   +   ++G  G+GK++ +  L  +  ++ G  LI G  I S + + +++
Sbjct: 19  VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI-SKIGLHDLR 77

Query: 496 KSIGVCPQ-VTLFS 508
             I + PQ   LFS
Sbjct: 78  SRISIIPQDPVLFS 91

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R L KTF     +       +     A+K +   + + Q   ++G NG+GK+T    
Sbjct: 5   LEVRNLSKTFRYRTGL------FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKM 58

Query: 467 LTGITPVTGGDALIYG 482
           L G+   T G+ LI  
Sbjct: 59  LAGMIEPTSGEILIND 74

Length = 267

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 15/63 (23%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           Q++G+ K FPG +               A+ G  +N+   ++  L+G NGAGK+T +  L
Sbjct: 6   QLKGIDKAFPGVK---------------ALSGAALNVYPGRVMALVGENGAGKSTMMKVL 50

Query: 468 TGI 470
           TGI
Sbjct: 51  TGI 53

Length = 501

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 375 MEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPY 434
           +E    ++  V E + +  +          + ++   + K + G R +            
Sbjct: 290 LEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLL------------ 337

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
             +K L   I +     ++GPNGAGK+T +  L G      G
Sbjct: 338 --LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377

Length = 530

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 15/76 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + + G+ K+F                P HA+K + + +   ++  LLG NGAGK+T +  
Sbjct: 6   ISMAGIGKSFG---------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKV 50

Query: 467 LTGITPVTGGDALIYG 482
           L+GI   T G   I  
Sbjct: 51  LSGIHEPTKGTITINN 66

Length = 510

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K + + + K +L  ++GP G+GK++ +S L G      G           SVS+    
Sbjct: 20  TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-----------SVSV---P 65

Query: 496 KSIGVCPQV 504
            SI    Q 
Sbjct: 66  GSIAYVSQE 74

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSY 509
           +LGPNGAGK+T +  L+G      G+  + G  + +S     + +   V PQ +  ++
Sbjct: 32  ILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL-NSWPPEELARHRAVLPQNSSLAF 88

Length = 259

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI--- 485
           +KT     +    + IAK ++F ++G +G+GK+TT+  L  +   T G   I G +I   
Sbjct: 1   KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60

Query: 486 ---------RSSVSMTNIQKSIGVCPQVTL 506
                    R  + M   Q+   + P +T+
Sbjct: 61  SPVELREVRRKKIGMV-FQQ-FALFPHMTI 88

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC------LTGITPVTGGDALIYGFSIRS 487
            HA+K + ++I K+++  L+GP+G GK+T + C      L     V  G+ L+ G +I  
Sbjct: 20  KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE-GEVLLDGKNIYD 78

Query: 488 -SVSMTNIQKSIG 499
             V +  +++ +G
Sbjct: 79  PKVDVVELRRRVG 91

Length = 253

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLFSY 509
           L+GPNGAGKTT +  + G    T G  L+ G  +  ++S     + +   PQ T  S+
Sbjct: 34  LVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV-EALSARAASRRVASVPQDTSLSF 90

Length = 402

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 443 NIAKD---QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG---FSIRSSVSMTNIQK 496
            I  D   ++  + G +GAGK+T + C+ G+    GG  ++ G   F  R  +++   Q+
Sbjct: 16  KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75

Query: 497 SIG-VCPQVTLFSYL 510
            IG V  Q  LF +L
Sbjct: 76  KIGLVFQQYALFPHL 90

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           I   +   L+GP+G+GK+T ++ +     V  G  LI G  +R   ++ ++++ IG+  Q
Sbjct: 25  IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR-DYTLASLRRQIGLVSQ 83

Query: 504 -VTLFS 508
            V LF+
Sbjct: 84  DVFLFN 89

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 452 LLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           ++GP+GAGK+T ++ L G        G+ LI G  +       + +K IG  PQ
Sbjct: 40  IMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL----DKRSFRKIIGYVPQ 89

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTGGDALIYGFSIRSSVSMTNIQ 495
           +  L +++   ++  L+GPNG GK+T + C   + TP + G   +    I S +S   + 
Sbjct: 18  LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS-GTVFLGDKPI-SMLSSRQLA 75

Query: 496 KSIGVCPQVTL 506
           + + + PQ  L
Sbjct: 76  RRLALLPQHHL 86

Length = 255

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 432 SPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM 491
               A+  + + I   +   ++G  G+GK+T +  L G+   T G  L+ G  IR  +  
Sbjct: 15  QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR-QLDP 73

Query: 492 TNIQKSIGVCPQ-VTLFS 508
            +++++IG  PQ VTLF 
Sbjct: 74  ADLRRNIGYVPQDVTLFY 91

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
           +I++ ++  +LGPNG GKTT I  L G+     GD  I   ++
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 12/24 (50%), Positives = 19/24 (79%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTG 475
           L+GPNGAGK+T ++ + G+ P +G
Sbjct: 27  LVGPNGAGKSTLLARMAGLLPGSG 50

Length = 248

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 12/61 (19%)

Query: 448 QLFCLLGPNGAGKTTTISCL-----TGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP 502
            L  L+G +GAGKTT ++ L     TG+  +TGGD L+ G  + SS      Q+SIG   
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLDSS-----FQRSIGYVQ 842

Query: 503 Q 503
           Q
Sbjct: 843 Q 843

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ + K +                   A+K + + I   +   ++GP+G+GK+T ++
Sbjct: 1   MIELKNVSKIYG-----------LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN 49

Query: 466 CLTGITPVTGGDALIYGFSI 485
            L G+   T G+ LI G  +
Sbjct: 50  LLGGLDKPTSGEVLINGKDL 69

Length = 226

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +    A+  +     ++    ++GPNGAGK+T      GI   T G  LI G  I + 
Sbjct: 12  SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI-TK 70

Query: 489 VSMTNIQKSIGVCPQ 503
            ++  ++K +G+  Q
Sbjct: 71  ENIREVRKFVGLVFQ 85

Length = 277

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           + A+  + ++I   +L  LLGP+GAGK+T +  + G+     G
Sbjct: 15  FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAG 57

Length = 345

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTG 475
           P  A++ + + IA  +L  +LGP+G GKTT ++ + G +TP  G
Sbjct: 17  PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG 60

Length = 259

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           Q   ++GP GAGK+T I+ L  +     G  LI G  IR +V+  +++++I V  Q
Sbjct: 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR-TVTRASLRRNIAVVFQ 416

Length = 588

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI------TPVTGGDALIYG 482
           HA+K + ++I K ++  L+GP+G GK+T +  L  +       P   G+ L+ G
Sbjct: 14  HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE-GEVLLDG 66

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.81
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.81
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.81
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.8
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.79
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.79
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.79
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.79
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.78
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.78
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.78
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.78
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.78
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.78
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.77
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.77
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.76
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.76
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.76
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.75
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.74
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.74
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.73
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.73
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.73
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.73
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.72
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.71
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.71
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.71
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.71
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.71
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.71
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.71
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.71
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.71
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.71
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.71
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.7
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.7
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.7
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.7
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.7
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.7
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.7
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.7
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.7
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.7
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.7
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.7
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.7
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.7
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.7
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.7
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.7
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.7
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.69
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.69
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.69
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.69
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.69
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.69
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.69
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.69
cd03246	173	ABCC_Protease_Secretion This family represents the	99.69
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.69
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.69
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.69
PRK10908	222	cell division protein FtsE; Provisional	99.69
PLN03140	1470	ABC transporter G family member; Provisional	99.69
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.69
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.69
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.69
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.69
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.69
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.69
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.69
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.69
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.69
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.69
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.69
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.69
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.69
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.68
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.68
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.68
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.68
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.68
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.68
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.68
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.68
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.68
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.68
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.68
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.68
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.68
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.68
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.68
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.68
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.68
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.68
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.68
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.68
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.68
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.67
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.67
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.67
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.67
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.67
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.67
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.67
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.67
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.67
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.67
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.67
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.67
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.67
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.67
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.67
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.66
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.66
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.66
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.66
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.66
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.66
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.66
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.66
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.66
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.66
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.66
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.66
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.66
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.66
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.66
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.66
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.66
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.66
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.66
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.66
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.66
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.66
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.66
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.66
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.65
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.65
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.65
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.65
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.65
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.65
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.65
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.65
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.65
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.64
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.64
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.64
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.64
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.64
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.64
COG4559	259	ABC-type hemin transport system, ATPase component	99.64
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.64
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.64
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.63
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.63
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.63
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.63
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.63
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.63
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.63
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.63
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.63
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.63
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.63
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.63
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.63
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.63
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.63
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.63
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.62
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.62
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.62
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.62
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.62
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.62
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.62
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.62
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.62
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.62
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.62
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.62
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.62
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.62
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.62
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.62
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.62
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.61
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.61
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.61
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.61
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.61
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.61
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.61
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.6
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.6
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.6
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.6
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.6
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.6
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.6
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.6
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.6
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.59
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.59
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.59
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.59
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.59
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.59
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.58
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.58
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.58
COG4988	559	CydD ABC-type transport system involved in cytochr	99.58
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.58
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.58
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.58
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.58
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.58
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.57
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.57
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.57
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.57
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.57
PRK10938	490	putative molybdenum transport ATP-binding protein	99.57
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.57
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.56
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.56
PLN03130	1622	ABC transporter C family member; Provisional	99.56
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.56
COG1123	539	ATPase components of various ABC-type transport sy	99.56
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.56
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.56
PRK10938	490	putative molybdenum transport ATP-binding protein	99.55
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.55
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.55
COG4181	228	Predicted ABC-type transport system involved in ly	99.55
PLN03232	1495	ABC transporter C family member; Provisional	99.55
PTZ00243	1560	ABC transporter; Provisional	99.54
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.54
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.53
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.53
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.53
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.53
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.53
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.52
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.52
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.52
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.52
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.51
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.51
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.51
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.5
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.5
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.5
PLN03211	659	ABC transporter G-25; Provisional	99.49
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.49
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.49
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.49
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.49
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.49
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	99.48
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.48
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.48
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.47
COG4987	573	CydC ABC-type transport system involved in cytochr	99.47
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.47
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.47
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.47
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.46
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.46
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.46
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.46
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.45
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.45
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.45
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.44
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.44
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.43
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.43
PRK11147	635	ABC transporter ATPase component; Reviewed	99.42
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.42
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.42
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.42
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.41
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.4
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.4
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.4
PLN03073	718	ABC transporter F family; Provisional	99.4
COG1123	539	ATPase components of various ABC-type transport sy	99.38
PRK11147	635	ABC transporter ATPase component; Reviewed	99.37
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.35
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.35
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.34
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.32
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.31
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.3
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.3
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.3
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.3
COG0488	530	Uup ATPase components of ABC transporters with dup	99.29
PRK13409	590	putative ATPase RIL; Provisional	99.29
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.29
PLN03140	1470	ABC transporter G family member; Provisional	99.28
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.28
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.28
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.28
COG4172	534	ABC-type uncharacterized transport system, duplica	99.27
PRK13409	590	putative ATPase RIL; Provisional	99.25
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.23
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.22
COG0488	530	Uup ATPase components of ABC transporters with dup	99.17
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.16
PLN03073	718	ABC transporter F family; Provisional	99.11
PLN03232	1495	ABC transporter C family member; Provisional	99.09
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.09
PLN03130	1622	ABC transporter C family member; Provisional	99.08
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.04
PTZ00243	1560	ABC transporter; Provisional	98.99
COG4172	534	ABC-type uncharacterized transport system, duplica	98.97
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.95
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.86
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.82
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.78
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.77
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.73
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.69
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.68
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.65
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.6
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.55
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.53
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.52
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.48
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.44
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.42
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.41
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.39
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.35
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.35
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.32
COG4178	604	ABC-type uncharacterized transport system, permeas	98.32
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.27
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.24
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.23
PRK08149	428	ATP synthase SpaL; Validated	98.21
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.16
PRK09825	176	idnK D-gluconate kinase; Provisional	98.15
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.14
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.12
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.08
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.08
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.07
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.07
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.06
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.02
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.01
PRK10416	318	signal recognition particle-docking protein FtsY;	97.99
PRK09862	506	putative ATP-dependent protease; Provisional	97.98
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.96
PRK09099	441	type III secretion system ATPase; Provisional	97.95
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.95
KOG0062	582	consensus ATPase component of ABC transporters wit	97.92
PRK01889	356	GTPase RsgA; Reviewed	97.92
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.91
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.9
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.88
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.87
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.87
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.86
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.85
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.84
PRK06315	442	type III secretion system ATPase; Provisional	97.84
PRK00300	205	gmk guanylate kinase; Provisional	97.83
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.82
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.82
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.81
PRK05922	434	type III secretion system ATPase; Validated	97.81
PLN02796	347	D-glycerate 3-kinase	97.78
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	97.77
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.77
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.74
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.73
PRK03846	198	adenylylsulfate kinase; Provisional	97.7
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.67
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.66
TIGR00767	415	rho transcription termination factor Rho. Members	97.66
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.66
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.65
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.64
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.64
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.61
KOG0062	582	consensus ATPase component of ABC transporters wit	97.6
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.56
PRK04863	1486	mukB cell division protein MukB; Provisional	97.56
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.55
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.54
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.52
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.51
PRK06820	440	type III secretion system ATPase; Validated	97.51
PRK06936	439	type III secretion system ATPase; Provisional	97.49
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.48
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.45
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	97.42
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.41
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.41
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.37
PRK00098	298	GTPase RsgA; Reviewed	97.37
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	97.34
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	97.33
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.32
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.31
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.29
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.27
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.25
PLN03046	460	D-glycerate 3-kinase; Provisional	97.23
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.21
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.21
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.18
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.17
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.17
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.16
PLN02165	334	adenylate isopentenyltransferase	97.15
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.12
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.1
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.09
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.08
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	97.04
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.02
PLN02318	656	phosphoribulokinase/uridine kinase	97.0
PRK00889	175	adenylylsulfate kinase; Provisional	96.99
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.99
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.95
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.95
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.93
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	96.92
PRK05480	209	uridine/cytidine kinase; Provisional	96.9
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	96.9
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.87
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	96.87
cd01128	249	rho_factor Transcription termination factor rho is	96.84
PTZ00035	337	Rad51 protein; Provisional	96.83
smart00382	148	AAA ATPases associated with a variety of cellular	96.77
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.77
PRK07429	327	phosphoribulokinase; Provisional	96.75
TIGR01248	152	drrC daunorubicin resistance protein C. The model	96.75
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.74
PRK15494	339	era GTPase Era; Provisional	96.71
PRK13851	344	type IV secretion system protein VirB11; Provision	96.7
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	96.65
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.58

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.8e-70  Score=644.35  Aligned_cols=469  Identities=23%  Similarity=0.372  Sum_probs=361.1

Q ss_pred             CCCCCCeeecCCHHHHHHHHH--cCCCccceEEEEeCCC------CCeeEEEEEEccccc--CC--------CCC----C
Q 010435            8 AIPSSKVMSFRTAAEVDDWLY--SNPMRCPGALHFVDRN------ATTISYGIQTNSTPI--EM--------RGR----Y   65 (510)
Q Consensus         8 ~~~~~~~~~f~s~~~l~~~~~--~~~~~~~~av~F~~~~------~~~~~Y~i~~n~~~~--~~--------~~~----~   65 (510)
                      -+..|++++++||++|++...  .+.+.++|||+|++..      |.+++|+||+|.+..  ..        .|+    .
T Consensus       519 c~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~  598 (2272)
T TIGR01257       519 CLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPV  598 (2272)
T ss_pred             HeeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCcc
Confidence            456799999999999999753  3445689999997642      367999999998732  11        111    1


Q ss_pred             CCCccc--hhhHHHHHHHHHHHHHHhCCCccceeeeeeccCCCchhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010435           66 EDPTFK--FQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIF---SAVARIGPTFFLAVAMFGFVFQISSLVTE  140 (510)
Q Consensus        66 ~~~~~~--~~~~lQ~~id~ai~~~~~~~~~~~~~v~~~~~p~p~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~iV~E  140 (510)
                      .+|.|+  .|+++|++||++|++..++.. ....+..|+||+|++...   ..+..++|+|+++++++++..+++.+|.|
T Consensus       599 ~~~~Y~~~GFl~lQ~ai~~aii~~~~~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~E  677 (2272)
T TIGR01257       599 EDFRYIWGGFAYLQDMVEQGITRSQMQAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLE  677 (2272)
T ss_pred             ccccHHHhhHHHHHHHHHHHHHHhhcCCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234454  589999999999999876532 345688999999998643   34567889999999999999999999999


Q ss_pred             HHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010435          141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFI  220 (510)
Q Consensus       141 Ke~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~~S~fF  220 (510)
                      ||+|+||.|+||||++++||+|||+..++..++++++++++..  ...+|..+++.++|+++++|++++|+|||++|+||
T Consensus       678 KE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fF  755 (2272)
T TIGR01257       678 KELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFF  755 (2272)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988888766655432  34568889999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCccccccCCCcCCCC
Q 010435          221 SKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN  300 (510)
Q Consensus       221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~g~~w~~~~~~~~~  300 (510)
                      +|+++|+.++.+++++.+++..+.   +.+.+..+...++++|++||.+|+.|+..++.++  .++.|++|+++..++..
T Consensus       756 ska~~A~~~~~li~f~~~lp~~~~---~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e--~~~~G~~w~n~~~~~~~  830 (2272)
T TIGR01257       756 SKASLAAACSGVIYFTLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFE--EQGLGLQWSNIGNSPLE  830 (2272)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHH---hhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHh--hhCCCcccccccccccC
Confidence            999999999988887766554321   1223344556788889999999999999999864  34778999998765543


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcceeecccccCcCCCCCCCcccCccccccCCCCCCCCCCC
Q 010435          301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITP  380 (510)
Q Consensus       301 ~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (510)
                      ++  .++++..+.||++|+++|++|+||+|+|+||+||++|||+|+++|+||+++.+.......   .....+.. ....
T Consensus       831 ~d--~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~---~~~~~~~~-~~~~  904 (2272)
T TIGR01257       831 GD--EFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREER---ALEKTEPL-TEEM  904 (2272)
T ss_pred             CC--CccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccc---cccccccc-cccc
Confidence            32  367888889999999999999999999999999999999999999999764311000000   00000000 0000


Q ss_pred             CChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCch
Q 010435          381 DDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGK  460 (510)
Q Consensus       381 ~d~~v~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGK  460 (510)
                      +|.+.  ++.......++++.+....++++||+|.|+++             .+.||+|+||++++||+++|+|||||||
T Consensus       905 ~~~~~--~~~~~~~~~E~~~~~~~~~L~I~nLsK~y~~~-------------~k~aL~~lsl~I~~Gei~aLLG~NGAGK  969 (2272)
T TIGR01257       905 EDPEH--PEGINDSFFERELPGLVPGVCVKNLVKIFEPS-------------GRPAVDRLNITFYENQITAFLGHNGAGK  969 (2272)
T ss_pred             ccccc--cccccccccccccCCCCceEEEEeEEEEecCC-------------CceEEEeeEEEEcCCcEEEEECCCCChH
Confidence            01000  00000000111222335689999999999532             1269999999999999999999999999


Q ss_pred             hHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          461 TTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       461 sTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |||+++|+|+.+|++|+|+++|+++.  .+.+++|+.+|||||++.|
T Consensus       970 STLLkiLaGLl~PtsG~I~i~G~dI~--~~~~~~r~~IG~~pQ~~~L 1014 (2272)
T TIGR01257       970 TTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNIL 1014 (2272)
T ss_pred             HHHHHHHhcCCCCCceEEEECCEECc--chHHHHhhcEEEEecCCcC
Confidence            99999999999999999999999994  3567789999999999865

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.6e-44  Score=425.06  Aligned_cols=381  Identities=21%  Similarity=0.321  Sum_probs=264.7

Q ss_pred             hhhHHH-HHHHHHHHHHHhCCC----ccceeeeeeccCCCchhHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010435           72 FQIPLQ-LAAEREIARSLVGDP----NFSWVVGLKEFAHPPGEIFS------AVARIGPTFFLAVAMFGFVFQISSLVTE  140 (510)
Q Consensus        72 ~~~~lQ-~~id~ai~~~~~~~~----~~~~~v~~~~~p~p~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~iV~E  140 (510)
                      +.+|+- +.+++||++...++.    +..+.+.++++|.+..+...      ....+..+++++...+....++..+|+|
T Consensus      1625 Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~E 1704 (2272)
T TIGR01257      1625 HALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQE 1704 (2272)
T ss_pred             cHHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehH
Confidence            345544 667899999865422    35677888888876433111      1111222233222333344555668999


Q ss_pred             HHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-CChHHHHHHHHHHHHHHHHHHHHHHHh
Q 010435          141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN-NSFAVLFLLFFLFELNMTGFAFMFSAF  219 (510)
Q Consensus       141 Ke~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~-~~~~~l~ll~~l~~~s~i~~s~~~S~f  219 (510)
                      |++|+|++|.++|++..+||+|+|+||++++++++++++++..+++...|.. .+++.+++++++||+|.|+++|++|++
T Consensus      1705 R~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~Sfl 1784 (2272)
T TIGR01257      1705 RVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFL 1784 (2272)
T ss_pred             HhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998888888888766654 577788899999999999999999999


Q ss_pred             cCchhHHHHHHHHH-HHHHHHHHHHHhh-cC-ccC---cccchhhhhhheecChHHHHHHHHHHHHhcCCCCCccccccC
Q 010435          220 ISKSSSSTTIGFSV-FIVGFLTQLVTAF-GF-PYS---DQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSR  293 (510)
Q Consensus       220 F~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~g~~w~~  293 (510)
                      |+++.+|.....++ +++|++..++..+ .. ...   ...+..+++++.++|+++++.|+..++......... -....
T Consensus      1785 F~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~-~~~~~ 1863 (2272)
T TIGR01257      1785 FDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVY-AQFGE 1863 (2272)
T ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHH-Hhhcc
Confidence            99999997654433 4444433322211 11 000   112356788899999999999999887643210000 00000


Q ss_pred             CCcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcceeecccccCcCCCCCCCcccCccccccCCCC
Q 010435          294 RAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVP  373 (510)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~  373 (510)
                      .....+...+   ..+..+++|++++++|++|.+++|+-.           + .  +-|....                 
T Consensus      1864 ~~~~~~~~~~---~~g~~ll~m~~~~iv~flLl~~ie~~~-----------~-~--~~~~~~~----------------- 1909 (2272)
T TIGR01257      1864 EHSANPFQWD---LIGKNLVAMAVEGVVYFLLTLLIQHHF-----------F-L--SRWIAEP----------------- 1909 (2272)
T ss_pred             cccCCccchh---hccHHHHHHHHHHHHHHHHHHHHHhhh-----------h-h--hhhcccc-----------------
Confidence            0000000110   123346778889999999999998531           0 0  0111110                 


Q ss_pred             CCCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEe
Q 010435          374 PMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLL  453 (510)
Q Consensus       374 ~~~~~~~~d~~v~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~ll  453 (510)
                      ..+...+||+||.+|+.++....     ..+..++++||+|.|+++             .+.||+|+||+|++|||+||+
T Consensus      1910 ~~~~~~~eD~DV~~Er~rV~~~~-----~~~~~L~v~nLsK~Y~~~-------------~~~aL~~ISf~I~~GEi~gLL 1971 (2272)
T TIGR01257      1910 AKEPIFDEDDDVAEERQRIISGG-----NKTDILRLNELTKVYSGT-------------SSPAVDRLCVGVRPGECFGLL 1971 (2272)
T ss_pred             CcCcCCCchhHHHHHHHHHhccC-----CCCceEEEEEEEEEECCC-------------CceEEEeeEEEEcCCcEEEEE
Confidence            00112358999999998775421     124579999999999642             126999999999999999999


Q ss_pred             cCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          454 GPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       454 G~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+||||||||++||+|+.+|++|+|+++|+++.  .+.++.|+.+|||||++.|
T Consensus      1972 G~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~--~~~~~~r~~IGy~pQ~~~L 2023 (2272)
T TIGR01257      1972 GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL--TNISDVHQNMGYCPQFDAI 2023 (2272)
T ss_pred             CCCCCcHHHHHHHHhCCCCCCccEEEECCEECc--chHHHHhhhEEEEeccccC
Confidence            999999999999999999999999999999984  3456778999999999865

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=3.9e-39  Score=365.82  Aligned_cols=379  Identities=25%  Similarity=0.306  Sum_probs=243.5

Q ss_pred             HHHHHHHHHHHHhCCCccceeeeeeccCCCchhH-HHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCC
Q 010435           77 QLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEI-FSA-VARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGL  154 (510)
Q Consensus        77 Q~~id~ai~~~~~~~~~~~~~v~~~~~p~p~~~~-~~~-~~~~~~~f~~~~~~~~~~~~~~~iV~EKe~~lke~m~~mGl  154 (510)
                      ....++++.+...+..   +.+.++++|.+.... .+. ...+.+.++.....+.+...+...|.||+.|+|++|+++|+
T Consensus       260 ~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~  336 (885)
T KOG0059|consen  260 LGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGL  336 (885)
T ss_pred             cchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCC
Confidence            4455677777654322   445555666554332 233 34555666666666677777888999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010435          155 YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVF  234 (510)
Q Consensus       155 ~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~~S~fF~~~~~a~~~~~~~~  234 (510)
                      ++++||+++++||++.+++.++++.+++.+++  ++..++..++++++++|+++.++++|++|++|+++..+.+...+..
T Consensus       337 ~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~  414 (885)
T KOG0059|consen  337 SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYN  414 (885)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHH
Confidence            99999999999999999999988888887777  5666788899999999999999999999999999999886655543


Q ss_pred             HHHHHHHHHHhhcCccCcccchhhhhhheecChHH-------HHHHHHHHHHhcCCCCCccccccCCCcCCCCCCccc--
Q 010435          235 IVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNL-------LAEALQLLSDATETPQDIGISWSRRAECAPNDTECV--  305 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~-------~~~~~~~i~~~~~~~~~~g~~w~~~~~~~~~~~~~~--  305 (510)
                      +++.+...+....+.+.............+.|++.       ++.+.......    ...+..|+....+........  
T Consensus       415 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  490 (885)
T KOG0059|consen  415 LISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLN----LNDGMSLEVLGNDESFYTLLLEW  490 (885)
T ss_pred             HHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc----chhhhhhhhhcccccccchhHHH
Confidence            33322221111111222222222333333445444       44443333322    234556666543210000000  


Q ss_pred             -c-hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcceeecccccCcCCCCCCCcccCccccccCCCCCCCCCCCCCh
Q 010435          306 -I-TINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDE  383 (510)
Q Consensus       306 -~-~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  383 (510)
                       . .....+..+....+.+.++...                   .+..+..+.....+.        ..+..+....||.
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~f~~l-------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~e~~  543 (885)
T KOG0059|consen  491 LLPLIGRRYLALVTEGVKDDLFFLL-------------------IFVPFKRRMRALTQN--------MLKGFEPVEVEKL  543 (885)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhhhcccccccccc--------ccCCCcCcchhhH
Confidence             0 0000111122222222222222                   111221111000000        0011122345677


Q ss_pred             hhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHH
Q 010435          384 DVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT  463 (510)
Q Consensus       384 ~v~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl  463 (510)
                      ||.+|+.++......  .....++.+++|+|.|+++.              .||+++|+.|++|||+|++|+|||||||+
T Consensus       544 ~v~~e~~~v~~~~~~--~~~~~~~~~~~L~k~y~~~~--------------~Av~~ls~~V~~gecfgLLG~NGAGKtT~  607 (885)
T KOG0059|consen  544 DVARERNRVETLLFR--SSYSSALVLNNLSKVYGGKD--------------GAVRGLSFAVPPGECFGLLGVNGAGKTTT  607 (885)
T ss_pred             HHHHHHHhhhhhhhc--ccccceEEEcceeeeecchh--------------hhhcceEEEecCCceEEEecCCCCCchhh
Confidence            888876544433221  11236799999999996531              19999999999999999999999999999


Q ss_pred             HHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       464 ~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++||+|+.+||+|+++++|+++....+.+++++++|||||+|.|
T Consensus       608 f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l  651 (885)
T KOG0059|consen  608 FKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDAL  651 (885)
T ss_pred             HHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhh
Confidence            99999999999999999999997656777899999999999987

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=5e-21  Score=174.90  Aligned_cols=85  Identities=26%  Similarity=0.415  Sum_probs=76.5

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+.+++|.|.|+++               ++|+++||+|++||++||||||||||||++.|++|+.+|++|+|.++|.||
T Consensus         4 ~L~a~~l~K~y~kr---------------~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~di   68 (243)
T COG1137           4 TLVAENLAKSYKKR---------------KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDI   68 (243)
T ss_pred             EEEehhhhHhhCCe---------------eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccc
Confidence            57899999999653               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ....--++.|..+||.||..
T Consensus        69 T~lPm~~RArlGigYLpQE~   88 (243)
T COG1137          69 TKLPMHKRARLGIGYLPQEA   88 (243)
T ss_pred             ccCChHHHhhcCcccccccc
Confidence            75333456788999999975

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.81  E-value=2.8e-20  Score=175.86  Aligned_cols=88  Identities=25%  Similarity=0.467  Sum_probs=80.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++.               .||+|+||+|++||.++++||+|||||||++||.++++||+|+|+|+|.+++
T Consensus         2 I~~~nvsk~y~~~---------------~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~   66 (309)
T COG1125           2 IEFENVSKRYGNK---------------KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS   66 (309)
T ss_pred             ceeeeeehhcCCc---------------eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecc
Confidence            6899999999743               6999999999999999999999999999999999999999999999999997


Q ss_pred             CcccHHHhhccEEEEccCCCc-cCC
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF-SYL  510 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L-~~~  510 (510)
                      + .+..+.|++|||+-|...| ++|
T Consensus        67 ~-~d~~~LRr~IGYviQqigLFPh~   90 (309)
T COG1125          67 D-LDPVELRRKIGYVIQQIGLFPHL   90 (309)
T ss_pred             c-CCHHHHHHhhhhhhhhcccCCCc
Confidence            4 6788899999999997765 543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=6e-20  Score=170.26  Aligned_cols=90  Identities=26%  Similarity=0.592  Sum_probs=80.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .|+++|++|.|++.               .+|+|+||+|++||+++|+||+||||||++++|.|+.+|++|+|.++|.++
T Consensus         2 mi~i~~l~K~fg~~---------------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~   66 (240)
T COG1126           2 MIEIKNLSKSFGDK---------------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV   66 (240)
T ss_pred             eEEEEeeeEEeCCe---------------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence            48999999999753               699999999999999999999999999999999999999999999999887


Q ss_pred             CCcccHHHhhccEEEEcc-CCCccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQ-VTLFSYL  510 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ-~~~L~~~  510 (510)
                      ....+..++|+++|+|+| +|..++|
T Consensus        67 ~~~~~~~~~R~~vGmVFQ~fnLFPHl   92 (240)
T COG1126          67 GDKKDILKLRRKVGMVFQQFNLFPHL   92 (240)
T ss_pred             cchhhHHHHHHhcCeecccccccccc
Confidence            433478899999999999 4555664

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.80  E-value=1.1e-19  Score=182.39  Aligned_cols=86  Identities=33%  Similarity=0.647  Sum_probs=77.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+.+++|+|.|+++              +.||+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         4 ~i~~~~l~k~~~~~--------------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~   69 (293)
T COG1131           4 VIEVRNLTKKYGGD--------------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDV   69 (293)
T ss_pred             eeeecceEEEeCCC--------------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeC
Confidence            57889999999731              1699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  .+..++|+++||+||.+.+
T Consensus        70 ~--~~~~~~~~~igy~~~~~~~   89 (293)
T COG1131          70 V--KEPAKVRRRIGYVPQEPSL   89 (293)
T ss_pred             c--cCHHHHHhheEEEccCCCC
Confidence            4  3467889999999998864

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.79  E-value=1.4e-19  Score=182.75  Aligned_cols=89  Identities=28%  Similarity=0.492  Sum_probs=79.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...+++++++|.|++.               .||+|+||+|++||+++|||||||||||+++||+|+..||+|+|.++|.
T Consensus         3 ~~~l~i~~v~k~yg~~---------------~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~   67 (352)
T COG3842           3 KPALEIRNVSKSFGDF---------------TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE   67 (352)
T ss_pred             CceEEEEeeeeecCCe---------------eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence            3579999999999732               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc-cCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF-SYL  510 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L-~~~  510 (510)
                      ++.+   +..-+|.+|+|+|.-+| +||
T Consensus        68 ~i~~---lpp~kR~ig~VFQ~YALFPHl   92 (352)
T COG3842          68 DITD---VPPEKRPIGMVFQSYALFPHM   92 (352)
T ss_pred             ECCC---CChhhcccceeecCcccCCCC
Confidence            9953   44568899999998766 665

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.79  E-value=4.1e-17  Score=193.79  Aligned_cols=87  Identities=28%  Similarity=0.370  Sum_probs=74.8

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEc
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIY  481 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~  481 (510)
                      ..++++||++.|+.+.           +.+.+++|+|+++++||+++|+||||||||||+++|+|+.+   |++|+|.++
T Consensus       758 ~~l~~~nl~~~~~~~~-----------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~  826 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKK-----------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVN  826 (1394)
T ss_pred             ceEEEEeeEEEecCCC-----------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEEC
Confidence            3579999999995321           12369999999999999999999999999999999999998   789999999


Q ss_pred             CeecCCcccHHHhhccEEEEccCCCc
Q 010435          482 GFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       482 g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |.++.     ++.|+.+|||||+|.+
T Consensus       827 G~~~~-----~~~~~~i~yv~Q~~~~  847 (1394)
T TIGR00956       827 GRPLD-----SSFQRSIGYVQQQDLH  847 (1394)
T ss_pred             CEECC-----hhhhcceeeecccccC
Confidence            99873     2468899999998864

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.79  E-value=3.6e-19  Score=180.10  Aligned_cols=86  Identities=31%  Similarity=0.556  Sum_probs=77.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..+++++|+|.|++.               .|++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.+
T Consensus         6 ~~i~i~~l~k~~~~~---------------~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~   70 (306)
T PRK13537          6 APIDFRNVEKRYGDK---------------LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP   70 (306)
T ss_pred             ceEEEEeEEEEECCe---------------EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe
Confidence            469999999999642               69999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +..  ...+.|+++|||||...+
T Consensus        71 ~~~--~~~~~~~~ig~v~q~~~~   91 (306)
T PRK13537         71 VPS--RARHARQRVGVVPQFDNL   91 (306)
T ss_pred             ccc--chHHHHhcEEEEeccCcC
Confidence            853  345678999999998755

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.79  E-value=3.5e-19  Score=172.58  Aligned_cols=85  Identities=29%  Similarity=0.540  Sum_probs=78.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+..|+++               .+++|+||++++||++||+||||||||||+|+|+|+++|.+|+|+++|.++
T Consensus         2 ~L~~~~ls~~y~~~---------------~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i   66 (258)
T COG1120           2 MLEVENLSFGYGGK---------------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI   66 (258)
T ss_pred             eeEEEEEEEEECCe---------------eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence            47899999999743               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhccEEEEccCCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .+ ...+++.+.+||+||...
T Consensus        67 ~~-~~~kelAk~ia~vpQ~~~   86 (258)
T COG1120          67 AS-LSPKELAKKLAYVPQSPS   86 (258)
T ss_pred             hh-cCHHHHhhhEEEeccCCC
Confidence            74 567788899999999753

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.78  E-value=1.1e-19  Score=170.77  Aligned_cols=82  Identities=33%  Similarity=0.563  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      ++++++++|.|+..               .||+|+||+|++||++|+||+||||||||++||.|+++||+|+|.++|.++
T Consensus         2 ~L~ie~vtK~Fg~k---------------~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~   66 (300)
T COG4152           2 ALEIEGVTKSFGDK---------------KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL   66 (300)
T ss_pred             ceEEecchhccCce---------------eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch
Confidence            47899999999653               799999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +     ...+.+|||.|-.-.|
T Consensus        67 ~-----~~~~~rIGyLPEERGL   83 (300)
T COG4152          67 S-----QEIKNRIGYLPEERGL   83 (300)
T ss_pred             h-----hhhhhhcccChhhhcc
Confidence            3     2568899999986554

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.1e-19  Score=166.42  Aligned_cols=85  Identities=22%  Similarity=0.345  Sum_probs=76.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++.+|+|+|+..              +.|++|+||++++||++||||+|||||||+++||++++.||+|.|+|+|.|. 
T Consensus         2 l~v~~l~K~y~~~--------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~-   66 (245)
T COG4555           2 LEVTDLTKSYGSK--------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT-   66 (245)
T ss_pred             eeeeehhhhccCH--------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccc-
Confidence            6789999999652              3599999999999999999999999999999999999999999999999998 


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                       ..+...+|++||+.+-...|
T Consensus        67 -~~~p~~vrr~IGVl~~e~gl   86 (245)
T COG4555          67 -VRDPSFVRRKIGVLFGERGL   86 (245)
T ss_pred             -ccChHHHhhhcceecCCcCh
Confidence             45778999999999855443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=4e-19  Score=172.84  Aligned_cols=92  Identities=25%  Similarity=0.444  Sum_probs=80.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      |++++++|.|...          +++...||+|+||+|++|||+|++|++|||||||++++.++..||+|+|.++|.|+.
T Consensus         2 I~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~   71 (339)
T COG1135           2 IELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT   71 (339)
T ss_pred             eEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecc
Confidence            7899999999763          123457999999999999999999999999999999999999999999999999885


Q ss_pred             C--cccHHHhhccEEEEccCC-Ccc
Q 010435          487 S--SVSMTNIQKSIGVCPQVT-LFS  508 (510)
Q Consensus       487 ~--~~~~~~~r~~iG~cpQ~~-~L~  508 (510)
                      .  ..++++.|++||+++||. .|+
T Consensus        72 ~l~~~~Lr~~R~~IGMIFQhFnLLs   96 (339)
T COG1135          72 ALSEAELRQLRQKIGMIFQHFNLLS   96 (339)
T ss_pred             cCChHHHHHHHhhccEEeccccccc
Confidence            3  345788899999999965 444

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=4.3e-19  Score=167.06  Aligned_cols=89  Identities=25%  Similarity=0.475  Sum_probs=80.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...|++++|+|.|+++               .+++|+||+|++||+++++|++|+||||+++.|.|+.+|++|+|+++|.
T Consensus         6 ~~~I~vr~v~~~fG~~---------------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~   70 (263)
T COG1127           6 EPLIEVRGVTKSFGDR---------------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE   70 (263)
T ss_pred             cceEEEeeeeeecCCE---------------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCc
Confidence            5679999999999754               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCC--cccHHHhhccEEEEccCCCc
Q 010435          484 SIRS--SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~--~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++..  ..+..++|+++|+++|+-+|
T Consensus        71 ~i~~ls~~~~~~ir~r~GvlFQ~gAL   96 (263)
T COG1127          71 DIPQLSEEELYEIRKRMGVLFQQGAL   96 (263)
T ss_pred             chhccCHHHHHHHHhheeEEeecccc
Confidence            9854  23456789999999998876

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.78  E-value=5.7e-19  Score=177.48  Aligned_cols=87  Identities=23%  Similarity=0.461  Sum_probs=77.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .||+++||+|++||.++|+||||||||||++||+|+.+||+|+|+|+|.++
T Consensus         3 ~i~l~~v~K~yg~~---------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v   67 (338)
T COG3839           3 ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV   67 (338)
T ss_pred             EEEEeeeEEEcCCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence            58999999999642               299999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhccEEEEccCCCc-cCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF-SYL  510 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L-~~~  510 (510)
                      .   +.....|++|+|+|.-+| ++|
T Consensus        68 t---~l~P~~R~iamVFQ~yALyPhm   90 (338)
T COG3839          68 T---DLPPEKRGIAMVFQNYALYPHM   90 (338)
T ss_pred             C---CCChhHCCEEEEeCCccccCCC
Confidence            5   344567899999998876 554

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.78  E-value=7.3e-19  Score=165.02  Aligned_cols=89  Identities=22%  Similarity=0.433  Sum_probs=79.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++|+-.|++.               +||+++||++++|||++|+|+||||||||++.|+|+.+|++|+|.++|.||
T Consensus         3 mL~v~~l~~~YG~~---------------~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di   67 (237)
T COG0410           3 MLEVENLSAGYGKI---------------QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI   67 (237)
T ss_pred             ceeEEeEeecccce---------------eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec
Confidence            57899999999653               799999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhccEEEEccC-CCccC
Q 010435          486 RSSVSMTNIQKSIGVCPQV-TLFSY  509 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~-~~L~~  509 (510)
                      .....-+.+|..|+||||- ++++.
T Consensus        68 t~~p~~~r~r~Gi~~VPegR~iF~~   92 (237)
T COG0410          68 TGLPPHERARLGIAYVPEGRRIFPR   92 (237)
T ss_pred             CCCCHHHHHhCCeEeCcccccchhh
Confidence            7655567789999999994 35444

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.77  E-value=8.9e-19  Score=179.35  Aligned_cols=87  Identities=31%  Similarity=0.563  Sum_probs=77.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++||+|.|++.               .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus        39 ~~~i~i~nl~k~y~~~---------------~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~  103 (340)
T PRK13536         39 TVAIDLAGVSKSYGDK---------------AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV  103 (340)
T ss_pred             ceeEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCE
Confidence            3469999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+  ...+.++.+|||||...+
T Consensus       104 ~~~~--~~~~~~~~ig~v~q~~~~  125 (340)
T PRK13536        104 PVPA--RARLARARIGVVPQFDNL  125 (340)
T ss_pred             ECCc--chHHHhccEEEEeCCccC
Confidence            9853  335678899999998765

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=4.2e-19  Score=167.86  Aligned_cols=85  Identities=29%  Similarity=0.464  Sum_probs=76.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++|+|+|++-               +||+|+||+|++||++||+|||||||||++|+|||.++||+|+|.++|.||
T Consensus         4 lL~v~~l~k~FGGl---------------~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~i   68 (250)
T COG0411           4 LLEVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI   68 (250)
T ss_pred             eeeeccceeecCCE---------------EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCccc
Confidence            47899999999763               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .....-+..|..|+--+|..
T Consensus        69 t~l~p~~iar~Gi~RTFQ~~   88 (250)
T COG0411          69 TGLPPHRIARLGIARTFQIT   88 (250)
T ss_pred             CCCCHHHHHhccceeecccc
Confidence            76444556677888889965

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.76  E-value=9e-19  Score=179.75  Aligned_cols=88  Identities=31%  Similarity=0.510  Sum_probs=80.7

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..+++++++|.|++               ++|.++|||+|++|||.+|||.||||||||++||.|+++||+|+|+++|+.
T Consensus         3 ~~l~~~~itK~f~~---------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~   67 (501)
T COG3845           3 PALEMRGITKRFPG---------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE   67 (501)
T ss_pred             ceEEEeccEEEcCC---------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEE
Confidence            47899999999974               279999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++-....+.+|..||+|.||-.|
T Consensus        68 v~~~sP~dA~~~GIGMVhQHF~L   90 (501)
T COG3845          68 VRIKSPRDAIRLGIGMVHQHFML   90 (501)
T ss_pred             eccCCHHHHHHcCCcEEeecccc
Confidence            86555677889999999999866

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.3e-18  Score=167.86  Aligned_cols=84  Identities=24%  Similarity=0.512  Sum_probs=73.5

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++               +||+|+||++++||+++|+||||||||||+|.|.|+++|++|+|.+.|.+
T Consensus         3 ~~i~v~nl~v~y~~~---------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~   67 (254)
T COG1121           3 PMIEVENLTVSYGNR---------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP   67 (254)
T ss_pred             cEEEEeeeEEEECCE---------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccc
Confidence            468999999999642               49999999999999999999999999999999999999999999999988


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++..    +-+.+|||+||..-+
T Consensus        68 ~~~~----~~~~~IgYVPQ~~~~   86 (254)
T COG1121          68 VRKR----RKRLRIGYVPQKSSV   86 (254)
T ss_pred             cccc----ccCCeEEEcCccccc
Confidence            7421    125789999996543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.6e-18  Score=162.85  Aligned_cols=88  Identities=28%  Similarity=0.581  Sum_probs=79.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|+|+++              +.|+++|||+|++||.++|+|++|||||||+++|.|+.+||+|+|.++|.++
T Consensus         3 ~i~~~nl~k~yp~~--------------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i   68 (258)
T COG3638           3 MIEVKNLSKTYPGG--------------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQI   68 (258)
T ss_pred             eEEEeeeeeecCCC--------------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccch
Confidence            68999999999754              2699999999999999999999999999999999999999999999999888


Q ss_pred             CC--cccHHHhhccEEEEccCCCc
Q 010435          486 RS--SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~--~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..  ..+++++|+++|+++|...|
T Consensus        69 ~~~~~k~lr~~r~~iGmIfQ~~nL   92 (258)
T COG3638          69 TKLKGKELRKLRRDIGMIFQQFNL   92 (258)
T ss_pred             hccchHHHHHHHHhceeEeccCCc
Confidence            53  34688899999999996544

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.75  E-value=4.2e-18  Score=172.09  Aligned_cols=84  Identities=27%  Similarity=0.518  Sum_probs=75.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         3 l~~~~l~~~~~~~---------------~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~   67 (301)
T TIGR03522         3 IRVSSLTKLYGTQ---------------NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVL   67 (301)
T ss_pred             EEEEEEEEEECCE---------------EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            7899999999532               5999999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  ...++|+.+|||||...+
T Consensus        68 ~--~~~~~~~~ig~~~q~~~l   86 (301)
T TIGR03522        68 Q--NPKEVQRNIGYLPEHNPL   86 (301)
T ss_pred             c--ChHHHHhceEEecCCCCC
Confidence            3  345678899999998754

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.74  E-value=6e-18  Score=160.92  Aligned_cols=93  Identities=25%  Similarity=0.472  Sum_probs=77.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|....           ....|++++||+|++||.++|+||+|||||||+++|.|+..||+|++.++|.|+.
T Consensus         2 i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~   70 (226)
T COG1136           2 IELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT   70 (226)
T ss_pred             cEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC
Confidence            56899999996532           1257999999999999999999999999999999999999999999999999986


Q ss_pred             Ccc--cHHHh-hccEEEEcc-CCCccCC
Q 010435          487 SSV--SMTNI-QKSIGVCPQ-VTLFSYL  510 (510)
Q Consensus       487 ~~~--~~~~~-r~~iG~cpQ-~~~L~~~  510 (510)
                      ...  +..+. |+++|+++| ++.|++|
T Consensus        71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~l   98 (226)
T COG1136          71 KLSEKELAKLRRKKIGFVFQNFNLLPDL   98 (226)
T ss_pred             cCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence            422  23344 567999999 5566664

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.74  E-value=8.1e-18  Score=170.18  Aligned_cols=86  Identities=33%  Similarity=0.521  Sum_probs=76.2

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|++.               .+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         3 ~~i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~   67 (303)
T TIGR01288         3 VAIDLVGVSKSYGDK---------------VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP   67 (303)
T ss_pred             cEEEEEeEEEEeCCe---------------EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence            368999999999642               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +..  ...+.|+.+||+||+..+
T Consensus        68 ~~~--~~~~~~~~i~~v~q~~~~   88 (303)
T TIGR01288        68 VPS--RARLARVAIGVVPQFDNL   88 (303)
T ss_pred             Ccc--cHHHHhhcEEEEeccccC
Confidence            842  335668899999998644

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.73  E-value=2.8e-18  Score=155.89  Aligned_cols=85  Identities=28%  Similarity=0.516  Sum_probs=76.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      |++++++|.|++.+              .|++|+||.|++||..-|.||+||||||++|+|.+...||+|+|.++|+|+.
T Consensus         2 I~f~~V~k~Y~~g~--------------~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~   67 (223)
T COG2884           2 IRFENVSKAYPGGR--------------EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS   67 (223)
T ss_pred             eeehhhhhhcCCCc--------------hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence            78899999997652              5999999999999999999999999999999999999999999999999985


Q ss_pred             C--cccHHHhhccEEEEccCC
Q 010435          487 S--SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~--~~~~~~~r~~iG~cpQ~~  505 (510)
                      .  ..++--.|++||+|+|+.
T Consensus        68 ~l~~~~iP~LRR~IGvVFQD~   88 (223)
T COG2884          68 RLKGREIPFLRRQIGVVFQDF   88 (223)
T ss_pred             cccccccchhhheeeeEeeec
Confidence            3  345667899999999965

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.73  E-value=1.1e-17  Score=171.05  Aligned_cols=90  Identities=21%  Similarity=0.438  Sum_probs=76.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++..           ..+.+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 I~~~~lsk~y~~~~-----------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~   70 (343)
T TIGR02314         2 IKLSNITKVFHQGT-----------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT   70 (343)
T ss_pred             EEEEEEEEEECCCC-----------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            78999999996321           1236999999999999999999999999999999999999999999999999985


Q ss_pred             Cc--ccHHHhhccEEEEccCCCc
Q 010435          487 SS--VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~--~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..  .+....|+.+||+||+..|
T Consensus        71 ~~~~~~l~~~r~~Ig~v~Q~~~l   93 (343)
T TIGR02314        71 TLSNSELTKARRQIGMIFQHFNL   93 (343)
T ss_pred             cCCHHHHHHHhcCEEEEECCccc
Confidence            32  2234568899999998654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.73  E-value=1.1e-17  Score=162.99  Aligned_cols=86  Identities=26%  Similarity=0.579  Sum_probs=73.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   65 (235)
T cd03261           1 IELRGLTKSFGGR---------------TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS   65 (235)
T ss_pred             CeEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            4688999999532               5999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc--cHHHhhccEEEEccCCCc
Q 010435          487 SSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...  +....|+.+||+||.+.+
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~   88 (235)
T cd03261          66 GLSEAELYRLRRRMGMLFQSGAL   88 (235)
T ss_pred             ccChhhHHHHhcceEEEccCccc
Confidence            311  134678899999998643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=9.3e-18  Score=159.97  Aligned_cols=81  Identities=26%  Similarity=0.527  Sum_probs=73.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+.+++++|.|++.               .|++|+||+|.+||+++|+||+||||||++++|+|+.+|++|+|.++|..+
T Consensus         3 ~l~i~~v~~~f~~~---------------~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v   67 (248)
T COG1116           3 LLEIEGVSKSFGGV---------------EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV   67 (248)
T ss_pred             eEEEEeeEEEeCce---------------EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence            58899999999652               699999999999999999999999999999999999999999999999887


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .      .....+||++|++.|
T Consensus        68 ~------~p~~~~~~vFQ~~~L   83 (248)
T COG1116          68 T------GPGPDIGYVFQEDAL   83 (248)
T ss_pred             C------CCCCCEEEEeccCcc
Confidence            3      336789999998865

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.72  E-value=1.9e-17  Score=159.73  Aligned_cols=84  Identities=33%  Similarity=0.559  Sum_probs=73.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   65 (220)
T cd03265           1 IEVENLVKKYGDF---------------EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV   65 (220)
T ss_pred             CEEEEEEEEECCE---------------EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecC
Confidence            4689999999542               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  ...+.++.+|||||...+
T Consensus        66 ~--~~~~~~~~i~~~~q~~~~   84 (220)
T cd03265          66 R--EPREVRRRIGIVFQDLSV   84 (220)
T ss_pred             c--ChHHHhhcEEEecCCccc
Confidence            2  234667889999998643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.71  E-value=2.4e-17  Score=171.80  Aligned_cols=86  Identities=28%  Similarity=0.486  Sum_probs=77.4

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++
T Consensus         3 ~L~~~nls~~y~~~---------------~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i   67 (402)
T PRK09536          3 MIDVSDLSVEFGDT---------------TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV   67 (402)
T ss_pred             eEEEeeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence            58899999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+ ...++.++++||+||...+
T Consensus        68 ~~-~~~~~~~~~ig~v~q~~~l   88 (402)
T PRK09536         68 EA-LSARAASRRVASVPQDTSL   88 (402)
T ss_pred             Cc-CCHHHHhcceEEEccCCCC
Confidence            53 3456778899999998765

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.71  E-value=2.3e-17  Score=158.61  Aligned_cols=88  Identities=25%  Similarity=0.422  Sum_probs=74.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++..             +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   68 (216)
T TIGR00960         2 IRFEQVSKAYPGGH-------------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT   68 (216)
T ss_pred             eEEEEEEEEecCCC-------------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence            67899999995421             15999999999999999999999999999999999999999999999999874


Q ss_pred             Cc--ccHHHhhccEEEEccCCCc
Q 010435          487 SS--VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~--~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..  .+....|+.+||+||+..+
T Consensus        69 ~~~~~~~~~~~~~i~~~~q~~~~   91 (216)
T TIGR00960        69 RLRGREIPFLRRHIGMVFQDHRL   91 (216)
T ss_pred             hcChhHHHHHHHhceEEecCccc
Confidence            21  1233467899999998643

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.71  E-value=2.5e-17  Score=159.02  Aligned_cols=86  Identities=23%  Similarity=0.420  Sum_probs=72.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++.               ++++++||++++||++||+|||||||||++++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (222)
T cd03224           1 LEVENLNAGYGKS---------------QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT   65 (222)
T ss_pred             CEEeeEEeecCCe---------------eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence            4688999999542               5999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .....+..++.+||+||...+
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~   86 (222)
T cd03224          66 GLPPHERARAGIGYVPEGRRI   86 (222)
T ss_pred             CCCHHHHHhcCeEEecccccc
Confidence            322222346789999998643

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.71  E-value=2.2e-17  Score=160.57  Aligned_cols=86  Identities=28%  Similarity=0.462  Sum_probs=72.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   65 (232)
T cd03218           1 LRAENLSKRYGKR---------------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT   65 (232)
T ss_pred             CeEEEEEEEeCCE---------------EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            4688999999542               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .....+..++.+||+||.+.+
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~   86 (232)
T cd03218          66 KLPMHKRARLGIGYLPQEASI   86 (232)
T ss_pred             cCCHhHHHhccEEEecCCccc
Confidence            321122245689999998643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.71  E-value=2.5e-17  Score=158.85  Aligned_cols=86  Identities=44%  Similarity=0.672  Sum_probs=74.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++.             ++++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         1 l~~~~l~~~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (220)
T cd03263           1 LQIRNLTKTYKKG-------------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR   67 (220)
T ss_pred             CEEEeeEEEeCCC-------------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            4688999999642             125999999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  ...+.++.+||+||...+
T Consensus        68 ~--~~~~~~~~i~~v~q~~~~   86 (220)
T cd03263          68 T--DRKAARQSLGYCPQFDAL   86 (220)
T ss_pred             c--chHHHhhhEEEecCcCCc
Confidence            2  235667889999997644

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.71  E-value=3.3e-17  Score=150.69  Aligned_cols=82  Identities=28%  Similarity=0.530  Sum_probs=71.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++.               ++++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~   65 (163)
T cd03216           1 LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS   65 (163)
T ss_pred             CEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence            4688999999642               5999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhccEEEEcc
Q 010435          487 SSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ  503 (510)
                      .....+..++.+||+||
T Consensus        66 ~~~~~~~~~~~i~~~~q   82 (163)
T cd03216          66 FASPRDARRAGIAMVYQ   82 (163)
T ss_pred             cCCHHHHHhcCeEEEEe
Confidence            32222445778999998

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.71  E-value=2.9e-17  Score=159.52  Aligned_cols=86  Identities=27%  Similarity=0.480  Sum_probs=73.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (230)
T TIGR03410         1 LEVSNLNVYYGQS---------------HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT   65 (230)
T ss_pred             CEEEeEEEEeCCe---------------EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            4689999999642               5999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .....+..++.+||+||+..+
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~   86 (230)
T TIGR03410        66 KLPPHERARAGIAYVPQGREI   86 (230)
T ss_pred             CCCHHHHHHhCeEEeccCCcc
Confidence            322223346789999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.71  E-value=3.4e-17  Score=157.66  Aligned_cols=88  Identities=28%  Similarity=0.486  Sum_probs=75.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++..           +..++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   70 (218)
T cd03266           2 ITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV   70 (218)
T ss_pred             eEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc
Confidence            67899999996431           1125999999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  ...+.|+.+|||||+..+
T Consensus        71 ~--~~~~~~~~i~~~~q~~~~   89 (218)
T cd03266          71 K--EPAEARRRLGFVSDSTGL   89 (218)
T ss_pred             c--CHHHHHhhEEEecCCccc
Confidence            2  345678899999998744

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.71  E-value=4.1e-17  Score=155.40  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=76.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEcC
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG  482 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~g  482 (510)
                      .+.++|++|.|+..+           +...+++++||++++||+++|+|+|||||||++++|+|+++   |++|+|.++|
T Consensus         3 ~~~~~~~~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g   71 (202)
T cd03233           3 TLSWRNISFTTGKGR-----------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG   71 (202)
T ss_pred             eEEEEccEEEeccCC-----------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC
Confidence            478999999997641           23369999999999999999999999999999999999999   8999999999


Q ss_pred             eecCCcccHHHhhccEEEEccCCCc
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++..  .....++.+|||||.+.+
T Consensus        72 ~~~~~--~~~~~~~~i~~~~q~~~~   94 (202)
T cd03233          72 IPYKE--FAEKYPGEIIYVSEEDVH   94 (202)
T ss_pred             EECcc--chhhhcceEEEEeccccc
Confidence            99843  224567889999997643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=3.7e-17  Score=159.89  Aligned_cols=86  Identities=29%  Similarity=0.492  Sum_probs=74.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (241)
T PRK10895          3 TLTAKNLAKAYKGR---------------RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI   67 (241)
T ss_pred             eEEEeCcEEEeCCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            47899999999532               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ......+..|+.+|||||.+.
T Consensus        68 ~~~~~~~~~~~~i~~~~q~~~   88 (241)
T PRK10895         68 SLLPLHARARRGIGYLPQEAS   88 (241)
T ss_pred             CCCCHHHHHHhCeEEeccCCc
Confidence            532222345788999999864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.71  E-value=3.8e-17  Score=155.31  Aligned_cols=84  Identities=21%  Similarity=0.313  Sum_probs=74.4

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++.               .+++++||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~   66 (200)
T PRK13540          2 LDVIELDFDYHDQ---------------PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK   66 (200)
T ss_pred             EEEEEEEEEeCCe---------------eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccc
Confidence            6889999999542               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  .....|+++||+||...+
T Consensus        67 ~--~~~~~~~~i~~~~q~~~~   85 (200)
T PRK13540         67 K--DLCTYQKQLCFVGHRSGI   85 (200)
T ss_pred             c--CHHHHHhheEEecccccc
Confidence            2  345668899999997544

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.70  E-value=4.5e-17  Score=157.75  Aligned_cols=88  Identities=16%  Similarity=0.311  Sum_probs=76.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..+++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus         5 ~~~i~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~   69 (225)
T PRK10247          5 SPLLQLQNVGYLAGDA---------------KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE   69 (225)
T ss_pred             CceEEEeccEEeeCCc---------------eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence            3469999999999542               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.. .+..+.++.+||+||...+
T Consensus        70 ~~~~-~~~~~~~~~i~~~~q~~~l   92 (225)
T PRK10247         70 DIST-LKPEIYRQQVSYCAQTPTL   92 (225)
T ss_pred             EcCc-CCHHHHHhccEEEeccccc
Confidence            8753 2345567899999998643

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.70  E-value=2.8e-17  Score=157.47  Aligned_cols=83  Identities=25%  Similarity=0.529  Sum_probs=72.4

Q ss_pred             EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (510)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~  488 (510)
                      +++++|.|++..             +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. 
T Consensus         2 ~~~l~~~~~~~~-------------~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-   67 (211)
T cd03225           2 LKNLSFSYPDGA-------------RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK-   67 (211)
T ss_pred             ceeEEEecCCCC-------------eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc-
Confidence            678999996421             259999999999999999999999999999999999999999999999998853 


Q ss_pred             ccHHHhhccEEEEccCC
Q 010435          489 VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       489 ~~~~~~r~~iG~cpQ~~  505 (510)
                      .+....++.+||+||..
T Consensus        68 ~~~~~~~~~i~~~~q~~   84 (211)
T cd03225          68 LSLKELRRKVGLVFQNP   84 (211)
T ss_pred             CCHHHHHhhceEEecCh
Confidence            33456788999999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.70  E-value=2.3e-17  Score=158.34  Aligned_cols=82  Identities=28%  Similarity=0.532  Sum_probs=71.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   65 (213)
T cd03259           1 LELKGLSKTYGSV---------------RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT   65 (213)
T ss_pred             CeeeeeEEEeCCe---------------eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcC
Confidence            3688999999542               5999999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCC
Q 010435          487 SSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .   ....++.+||+||...
T Consensus        66 ~---~~~~~~~i~~v~q~~~   82 (213)
T cd03259          66 G---VPPERRNIGMVFQDYA   82 (213)
T ss_pred             c---CchhhccEEEEcCchh
Confidence            2   2234678999999753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.70  E-value=4.9e-17  Score=151.68  Aligned_cols=86  Identities=23%  Similarity=0.505  Sum_probs=73.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|+++               .+++++||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (178)
T cd03229           1 LELKNVSKRYGQK---------------TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT   65 (178)
T ss_pred             CEEEEEEEEECCe---------------EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            4688999999542               5999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc-cHHHhhccEEEEccCCCc
Q 010435          487 SSV-SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~-~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.. .....++.++|+||.+.+
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~   87 (178)
T cd03229          66 DLEDELPPLRRRIGMVFQDFAL   87 (178)
T ss_pred             ccchhHHHHhhcEEEEecCCcc
Confidence            311 134668899999998643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=4e-17  Score=167.78  Aligned_cols=86  Identities=27%  Similarity=0.410  Sum_probs=76.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...+++++++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus         4 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~   68 (351)
T PRK11432          4 KNFVVLKNITKRFGSN---------------TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE   68 (351)
T ss_pred             CcEEEEEeEEEEECCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCE
Confidence            3469999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+   ....++++|||||+..|
T Consensus        69 ~i~~---~~~~~r~ig~vfQ~~~l   89 (351)
T PRK11432         69 DVTH---RSIQQRDICMVFQSYAL   89 (351)
T ss_pred             ECCC---CCHHHCCEEEEeCCccc
Confidence            9853   22446899999998765

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.70  E-value=4.5e-17  Score=155.32  Aligned_cols=84  Identities=24%  Similarity=0.330  Sum_probs=74.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~   66 (204)
T PRK13538          2 LEARNLACERDER---------------ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR   66 (204)
T ss_pred             eEEEEEEEEECCE---------------EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence            6889999999542               5999999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  .....++.+|+++|.+.+
T Consensus        67 ~--~~~~~~~~~~~~~~~~~~   85 (204)
T PRK13538         67 R--QRDEYHQDLLYLGHQPGI   85 (204)
T ss_pred             c--chHHhhhheEEeCCcccc
Confidence            2  234567889999997644

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.70  E-value=2.9e-17  Score=156.65  Aligned_cols=80  Identities=28%  Similarity=0.427  Sum_probs=70.4

Q ss_pred             EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (510)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~  487 (510)
                      +++|++|.|++.              +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus         1 ~~~~l~~~~~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   66 (205)
T cd03226           1 RIENISFSYKKG--------------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA   66 (205)
T ss_pred             CcccEEEEeCCc--------------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh
Confidence            367899999541              159999999999999999999999999999999999999999999999998731


Q ss_pred             cccHHHhhccEEEEccCC
Q 010435          488 SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       488 ~~~~~~~r~~iG~cpQ~~  505 (510)
                          ...++.+||+||+.
T Consensus        67 ----~~~~~~i~~~~q~~   80 (205)
T cd03226          67 ----KERRKSIGYVMQDV   80 (205)
T ss_pred             ----HHhhcceEEEecCh
Confidence                35677899999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.70  E-value=3.8e-17  Score=156.21  Aligned_cols=83  Identities=27%  Similarity=0.470  Sum_probs=73.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (208)
T cd03268           1 LKTNDLTKTYGKK---------------RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ   65 (208)
T ss_pred             CEEEEEEEEECCe---------------EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc
Confidence            4689999999532               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .   ..+.++.+|||||++.+
T Consensus        66 ~---~~~~~~~i~~~~q~~~~   83 (208)
T cd03268          66 K---NIEALRRIGALIEAPGF   83 (208)
T ss_pred             c---hHHHHhhEEEecCCCcc
Confidence            2   24567889999998643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.70  E-value=3.7e-17  Score=159.38  Aligned_cols=85  Identities=31%  Similarity=0.503  Sum_probs=72.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (236)
T cd03219           1 LEVRGLTKRFGGL---------------VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT   65 (236)
T ss_pred             CeeeeeEEEECCE---------------EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECC
Confidence            3578999999532               5999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHH-hhccEEEEccCCCc
Q 010435          487 SSVSMTN-IQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~-~r~~iG~cpQ~~~L  507 (510)
                      . .+..+ .++.+||+||+..+
T Consensus        66 ~-~~~~~~~~~~i~~v~q~~~l   86 (236)
T cd03219          66 G-LPPHEIARLGIGRTFQIPRL   86 (236)
T ss_pred             C-CCHHHHHhcCEEEEeccccc
Confidence            3 22223 35679999998643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.70  E-value=4.3e-17  Score=154.70  Aligned_cols=84  Identities=20%  Similarity=0.288  Sum_probs=73.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++++||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (198)
T TIGR01189         1 LAARNLACSRGER---------------MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA   65 (198)
T ss_pred             CEEEEEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence            4688999999542               5999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..  ..+.++.+||+||.+.+
T Consensus        66 ~~--~~~~~~~i~~~~q~~~~   84 (198)
T TIGR01189        66 EQ--RDEPHRNILYLGHLPGL   84 (198)
T ss_pred             cc--hHHhhhheEEeccCccc
Confidence            32  23557889999997644

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=6e-17  Score=161.11  Aligned_cols=88  Identities=24%  Similarity=0.391  Sum_probs=77.2

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .+.+++++++|.|++..             +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.
T Consensus         5 ~~~l~i~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~   71 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDA-------------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ   71 (269)
T ss_pred             CceEEEEEEEEEcCCCC-------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence            34689999999996431             15899999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++.. .+..++|+.+|||||.+
T Consensus        72 ~~~~-~~~~~~~~~i~~v~q~~   92 (269)
T PRK13648         72 AITD-DNFEKLRKHIGIVFQNP   92 (269)
T ss_pred             ECCc-CCHHHHHhheeEEEeCh
Confidence            9853 34567788999999985

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=6e-17  Score=161.90  Aligned_cols=87  Identities=17%  Similarity=0.360  Sum_probs=76.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..+++++|++.|++.             ++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         4 ~~l~~~~l~~~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~   70 (279)
T PRK13635          4 EIIRVEHISFRYPDA-------------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV   70 (279)
T ss_pred             ceEEEEEEEEEeCCC-------------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            368999999999642             1259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +.+ ....+.++.+||+||..
T Consensus        71 i~~-~~~~~~~~~i~~~~q~~   90 (279)
T PRK13635         71 LSE-ETVWDVRRQVGMVFQNP   90 (279)
T ss_pred             CCc-CcHHHHhhheEEEEeCH
Confidence            853 23455678899999975

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.70  E-value=3.8e-17  Score=157.32  Aligned_cols=90  Identities=27%  Similarity=0.495  Sum_probs=72.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++..           ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   69 (218)
T cd03255           1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIS   69 (218)
T ss_pred             CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehh
Confidence            36889999996421           0125999999999999999999999999999999999999999999999999874


Q ss_pred             Ccc--cHHH-hhccEEEEccCCCc
Q 010435          487 SSV--SMTN-IQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~-~r~~iG~cpQ~~~L  507 (510)
                      ...  +... .++.+||+||.+.+
T Consensus        70 ~~~~~~~~~~~~~~i~~~~q~~~~   93 (218)
T cd03255          70 KLSEKELAAFRRRHIGFVFQSFNL   93 (218)
T ss_pred             hcchhHHHHHHhhcEEEEeecccc
Confidence            211  1122 35789999998643

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.70  E-value=5.2e-17  Score=150.56  Aligned_cols=87  Identities=24%  Similarity=0.520  Sum_probs=74.4

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++.             ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus         1 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~   67 (171)
T cd03228           1 IEFKNVSFSYPGRP-------------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR   67 (171)
T ss_pred             CEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence            36889999996431             15899999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . ......++.+|||||+..+
T Consensus        68 ~-~~~~~~~~~i~~~~~~~~~   87 (171)
T cd03228          68 D-LDLESLRKNIAYVPQDPFL   87 (171)
T ss_pred             h-cCHHHHHhhEEEEcCCchh
Confidence            2 2345667889999998643

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.70  E-value=4.3e-17  Score=170.58  Aligned_cols=89  Identities=29%  Similarity=0.504  Sum_probs=78.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .+.+++++++|.|++-               +||+++||++++|||+||+|.||||||||+|+|+|.++||+|+|.++|.
T Consensus         6 ~~ll~~~~i~K~FggV---------------~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~   70 (500)
T COG1129           6 PPLLELRGISKSFGGV---------------KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK   70 (500)
T ss_pred             cceeeeecceEEcCCc---------------eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE
Confidence            3468999999999753               7999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+......+.....|+.++|+-.|
T Consensus        71 ~~~~~sp~~A~~~GI~~V~QEl~L   94 (500)
T COG1129          71 PVAFSSPRDALAAGIATVHQELSL   94 (500)
T ss_pred             EccCCCHHHHHhCCcEEEeechhc
Confidence            986434455556789999997654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.70  E-value=3.8e-17  Score=158.39  Aligned_cols=86  Identities=24%  Similarity=0.447  Sum_probs=73.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc-----cCCcceEEEc
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALIY  481 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~-----~pt~G~i~i~  481 (510)
                      ++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.     +|++|+|.++
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~   65 (227)
T cd03260           1 IELRDLNVYYGDK---------------HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLD   65 (227)
T ss_pred             CEEEEEEEEcCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEEC
Confidence            4689999999542               5999999999999999999999999999999999999     9999999999


Q ss_pred             CeecCCcc-cHHHhhccEEEEccCCCc
Q 010435          482 GFSIRSSV-SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       482 g~~i~~~~-~~~~~r~~iG~cpQ~~~L  507 (510)
                      |.++.... +....|+.+||+||+..+
T Consensus        66 g~~~~~~~~~~~~~~~~i~~~~q~~~~   92 (227)
T cd03260          66 GKDIYDLDVDVLELRRRVGMVFQKPNP   92 (227)
T ss_pred             CEEhhhcchHHHHHHhhEEEEecCchh
Confidence            99874311 145668899999998643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.70  E-value=5.5e-17  Score=158.60  Aligned_cols=86  Identities=23%  Similarity=0.536  Sum_probs=74.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (240)
T PRK09493          2 IEFKNVSKHFGPT---------------QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN   66 (240)
T ss_pred             EEEEeEEEEECCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            6789999999532               5999999999999999999999999999999999999999999999999985


Q ss_pred             Cc-ccHHHhhccEEEEccCCCc
Q 010435          487 SS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. .+....++.+||+||...+
T Consensus        67 ~~~~~~~~~~~~i~~~~q~~~~   88 (240)
T PRK09493         67 DPKVDERLIRQEAGMVFQQFYL   88 (240)
T ss_pred             cCChhHHHHhhceEEEeccccc
Confidence            31 1235668899999997643

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=6.5e-17  Score=162.31  Aligned_cols=90  Identities=24%  Similarity=0.440  Sum_probs=75.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++|+|.|++...          ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~   71 (287)
T PRK13637          2 SIKIENLTHIYMEGTP----------FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI   71 (287)
T ss_pred             EEEEEEEEEECCCCCc----------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC
Confidence            3789999999964210          012599999999999999999999999999999999999999999999999998


Q ss_pred             CCcc-cHHHhhccEEEEccCC
Q 010435          486 RSSV-SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~-~~~~~r~~iG~cpQ~~  505 (510)
                      .... ...+.++.+|||||..
T Consensus        72 ~~~~~~~~~~~~~ig~v~q~~   92 (287)
T PRK13637         72 TDKKVKLSDIRKKVGLVFQYP   92 (287)
T ss_pred             CCcCccHHHHhhceEEEecCc
Confidence            5311 2346788999999974

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.70  E-value=4.5e-17  Score=154.95  Aligned_cols=84  Identities=24%  Similarity=0.361  Sum_probs=73.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (201)
T cd03231           1 LEADELTCERDGR---------------ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD   65 (201)
T ss_pred             CEEEEEEEEeCCc---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            3689999999542               5899999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  .....|+.+||+||.+.+
T Consensus        66 ~--~~~~~~~~i~~~~q~~~~   84 (201)
T cd03231          66 F--QRDSIARGLLYLGHAPGI   84 (201)
T ss_pred             c--ccHHhhhheEEecccccc
Confidence            2  234678899999997654

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=6.3e-17  Score=161.36  Aligned_cols=85  Identities=22%  Similarity=0.415  Sum_probs=74.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|+++              +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (274)
T PRK13644          2 IRLENVSYSYPDG--------------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG   67 (274)
T ss_pred             EEEEEEEEEcCCC--------------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence            6789999999532              14999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhccEEEEccCC
Q 010435          487 SSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ........++.+|||||..
T Consensus        68 ~~~~~~~~~~~i~~v~q~~   86 (274)
T PRK13644         68 DFSKLQGIRKLVGIVFQNP   86 (274)
T ss_pred             ccccHHHHHhheEEEEECh
Confidence            3222456678999999974

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.70  E-value=4.7e-17  Score=159.07  Aligned_cols=87  Identities=31%  Similarity=0.583  Sum_probs=74.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|+++              ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         1 l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   66 (241)
T cd03256           1 IEVENLSKTYPNG--------------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN   66 (241)
T ss_pred             CEEeeEEEecCCc--------------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecc
Confidence            3688999999641              15999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc--cHHHhhccEEEEccCCCc
Q 010435          487 SSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...  +....++.+||+||...+
T Consensus        67 ~~~~~~~~~~~~~i~~~~q~~~~   89 (241)
T cd03256          67 KLKGKALRQLRRQIGMIFQQFNL   89 (241)
T ss_pred             ccCHhHHHHHHhccEEEcccCcc
Confidence            311  134567899999998643

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.70  E-value=5.2e-17  Score=167.18  Aligned_cols=84  Identities=27%  Similarity=0.475  Sum_probs=74.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~   68 (353)
T TIGR03265         4 YLSIDNIRKRFGAF---------------TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI   68 (353)
T ss_pred             EEEEEEEEEEeCCe---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC
Confidence            58999999999642               589999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+   ....++.+|||||+..|
T Consensus        69 ~~---~~~~~r~ig~v~Q~~~l   87 (353)
T TIGR03265        69 TR---LPPQKRDYGIVFQSYAL   87 (353)
T ss_pred             CC---CCHHHCCEEEEeCCccc
Confidence            53   22347889999998754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.69  E-value=6.3e-17  Score=155.36  Aligned_cols=87  Identities=28%  Similarity=0.452  Sum_probs=74.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++              ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   67 (214)
T TIGR02673         2 IEFHNVSKAYPGG--------------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN   67 (214)
T ss_pred             EEEEeeeEEeCCC--------------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            6789999999422              15999999999999999999999999999999999999999999999999985


Q ss_pred             Ccc--cHHHhhccEEEEccCCCc
Q 010435          487 SSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...  +....++.+||+||+..+
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~   90 (214)
T TIGR02673        68 RLRGRQLPLLRRRIGVVFQDFRL   90 (214)
T ss_pred             cCCHHHHHHHHhheEEEecChhh
Confidence            311  233567899999998643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=7.3e-17  Score=160.69  Aligned_cols=88  Identities=27%  Similarity=0.493  Sum_probs=76.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++|++|.|++..             +.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus         5 ~~~l~~~nl~~~~~~~~-------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~   71 (271)
T PRK13632          5 SVMIKVENVSFSYPNSE-------------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI   71 (271)
T ss_pred             ceEEEEEeEEEEcCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence            34689999999996321             15999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++.. .+..++|+.+|||||..
T Consensus        72 ~i~~-~~~~~~~~~i~~v~q~~   92 (271)
T PRK13632         72 TISK-ENLKEIRKKIGIIFQNP   92 (271)
T ss_pred             ecCc-CCHHHHhcceEEEEeCH
Confidence            9852 34456788999999985

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.69  E-value=3.2e-17  Score=180.88  Aligned_cols=90  Identities=16%  Similarity=0.355  Sum_probs=82.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++|++++|+...             ..+|+|+||+|++||.+||+|+|||||||++|+|+|+++|++|+|.+||+
T Consensus       469 ~g~I~~~nvsf~y~~~~-------------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~  535 (709)
T COG2274         469 QGEIEFENVSFRYGPDD-------------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV  535 (709)
T ss_pred             CceEEEEEEEEEeCCCC-------------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence            45799999999997652             16999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+.+ -+.+.+|+++||+||++.|
T Consensus       536 dl~~-i~~~~lR~~ig~V~Q~~~L  558 (709)
T COG2274         536 DLND-IDLASLRRQVGYVLQDPFL  558 (709)
T ss_pred             eHHh-cCHHHHHhheeEEcccchh
Confidence            9973 6789999999999999876

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=7.3e-17  Score=161.90  Aligned_cols=89  Identities=18%  Similarity=0.332  Sum_probs=75.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|++...          ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         3 l~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~   72 (286)
T PRK13646          3 IRFDNVSYTYQKGTP----------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT   72 (286)
T ss_pred             EEEEEEEEEECCCCc----------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            789999999964210          0125999999999999999999999999999999999999999999999999984


Q ss_pred             Cc---ccHHHhhccEEEEccCC
Q 010435          487 SS---VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~~---~~~~~~r~~iG~cpQ~~  505 (510)
                      ..   .+..++|+.+|||||..
T Consensus        73 ~~~~~~~~~~~~~~ig~v~q~~   94 (286)
T PRK13646         73 HKTKDKYIRPVRKRIGMVFQFP   94 (286)
T ss_pred             cccccchHHHHHhheEEEecCh
Confidence            21   23457789999999974

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=6.6e-17  Score=158.21  Aligned_cols=86  Identities=23%  Similarity=0.476  Sum_probs=75.4

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   67 (241)
T PRK14250          3 EIEFKEVSYSSFGK---------------EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI   67 (241)
T ss_pred             eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence            47899999999542               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. ....+.|+.+||+||...+
T Consensus        68 ~~-~~~~~~~~~i~~~~q~~~~   88 (241)
T PRK14250         68 KT-IDVIDLRRKIGMVFQQPHL   88 (241)
T ss_pred             hh-cChHHhhhcEEEEecCchh
Confidence            52 2345667899999998643

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.69  E-value=7.4e-17  Score=149.78  Aligned_cols=83  Identities=29%  Similarity=0.570  Sum_probs=72.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   65 (173)
T cd03230           1 IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK   65 (173)
T ss_pred             CEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence            3678999999532               5899999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCCC
Q 010435          487 SSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      . .. .+.|+.+|||||+..
T Consensus        66 ~-~~-~~~~~~i~~~~q~~~   83 (173)
T cd03230          66 K-EP-EEVKRRIGYLPEEPS   83 (173)
T ss_pred             c-ch-HhhhccEEEEecCCc
Confidence            3 22 466789999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.69  E-value=5.5e-17  Score=155.57  Aligned_cols=86  Identities=23%  Similarity=0.547  Sum_probs=74.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|+++               .+++++||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (213)
T cd03262           1 IEIKNLHKSFGDF---------------HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT   65 (213)
T ss_pred             CEEEEEEEEECCe---------------EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence            3688999999542               5999999999999999999999999999999999999999999999999884


Q ss_pred             C-cccHHHhhccEEEEccCCCc
Q 010435          487 S-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . ..+....++.+||+||...+
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~   87 (213)
T cd03262          66 DDKKNINELRQKVGMVFQQFNL   87 (213)
T ss_pred             ccchhHHHHHhcceEEeccccc
Confidence            2 12345678899999997643

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=9.2e-17  Score=156.73  Aligned_cols=86  Identities=21%  Similarity=0.368  Sum_probs=74.5

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|+++               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++
T Consensus         5 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   69 (237)
T PRK11614          5 MLSFDKVSAHYGKI---------------QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI   69 (237)
T ss_pred             EEEEEeEEEeeCCc---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEec
Confidence            58999999999532               599999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhccEEEEccCCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ......+..++.+||+||...
T Consensus        70 ~~~~~~~~~~~~i~~~~q~~~   90 (237)
T PRK11614         70 TDWQTAKIMREAVAIVPEGRR   90 (237)
T ss_pred             CCCCHHHHHHhCEEEeccCcc
Confidence            532222345778999999764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.69  E-value=6.2e-17  Score=158.45  Aligned_cols=86  Identities=29%  Similarity=0.510  Sum_probs=74.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++.              ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~--------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (242)
T cd03295           1 IEFENVTKRYGGG--------------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR   66 (242)
T ss_pred             CEEEEEEEEeCCc--------------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcC
Confidence            3678999999641              15999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+.++.++.+|||||.+.+
T Consensus        67 ~-~~~~~~~~~i~~~~q~~~~   86 (242)
T cd03295          67 E-QDPVELRRKIGYVIQQIGL   86 (242)
T ss_pred             c-CChHHhhcceEEEccCccc
Confidence            3 2345667899999998643

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.69  E-value=6e-17  Score=166.69  Aligned_cols=84  Identities=25%  Similarity=0.476  Sum_probs=74.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|++.               .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++
T Consensus         2 ~L~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i   66 (353)
T PRK10851          2 SIEIANIKKSFGRT---------------QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV   66 (353)
T ss_pred             EEEEEEEEEEeCCe---------------EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            37899999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ....++.+|||||+..|
T Consensus        67 ~~---~~~~~r~i~~v~Q~~~l   85 (353)
T PRK10851         67 SR---LHARDRKVGFVFQHYAL   85 (353)
T ss_pred             CC---CCHHHCCEEEEecCccc
Confidence            53   22346789999998754

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.69  E-value=8.7e-17  Score=149.32  Aligned_cols=87  Identities=20%  Similarity=0.406  Sum_probs=74.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++.+             ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++.
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (173)
T cd03246           1 LEVENVSFRYPGAE-------------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS   67 (173)
T ss_pred             CEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence            36889999996421             25999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      + ...++.++.+||++|...+
T Consensus        68 ~-~~~~~~~~~i~~~~q~~~~   87 (173)
T cd03246          68 Q-WDPNELGDHVGYLPQDDEL   87 (173)
T ss_pred             c-CCHHHHHhheEEECCCCcc
Confidence            3 3345678899999998643

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.69  E-value=2.3e-17  Score=160.33  Aligned_cols=90  Identities=22%  Similarity=0.401  Sum_probs=75.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|+..               .|++|++|+|+.||.++|+|||||||||++++|+|+..|++|+|.++|.-+
T Consensus         2 ~i~i~~~~~~~~~~---------------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l   66 (345)
T COG1118           2 SIRINNVKKRFGAF---------------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL   66 (345)
T ss_pred             ceeehhhhhhcccc---------------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEec
Confidence            37888999999653               699999999999999999999999999999999999999999999999933


Q ss_pred             CCcccHHHhhccEEEEccCCCc-cCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF-SYL  510 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L-~~~  510 (510)
                      .+.++...-.++||+++||-.| .+|
T Consensus        67 ~D~~~~~~~~R~VGfvFQ~YALF~Hm   92 (345)
T COG1118          67 FDVSNLAVRDRKVGFVFQHYALFPHM   92 (345)
T ss_pred             cchhccchhhcceeEEEechhhcccc
Confidence            3223334446789999998765 443

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.69  E-value=7.9e-17  Score=157.65  Aligned_cols=87  Identities=29%  Similarity=0.402  Sum_probs=73.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   66 (242)
T TIGR03411         2 ILYLEGLSVSFDGF---------------KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL   66 (242)
T ss_pred             eEEEEeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence            47899999999542               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ......+..++.+||+||.+.+
T Consensus        67 ~~~~~~~~~~~~i~~~~q~~~~   88 (242)
T TIGR03411        67 TGLPEHQIARAGIGRKFQKPTV   88 (242)
T ss_pred             CCCCHHHHHhcCeeEecccccc
Confidence            5322222345679999998643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.69  E-value=8.1e-17  Score=153.87  Aligned_cols=89  Identities=19%  Similarity=0.337  Sum_probs=77.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++++++.|++..             ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~~~~~~-------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~   71 (207)
T cd03369           5 GEIEVENLSVRYAPDL-------------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID   71 (207)
T ss_pred             CeEEEEEEEEEeCCCC-------------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence            4589999999996421             159999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.. ...++.|+.+|||||+..+
T Consensus        72 ~~~-~~~~~~~~~i~~v~q~~~~   93 (207)
T cd03369          72 IST-IPLEDLRSSLTIIPQDPTL   93 (207)
T ss_pred             hHH-CCHHHHHhhEEEEecCCcc
Confidence            742 3455678899999998644

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.69  E-value=7.9e-17  Score=155.63  Aligned_cols=87  Identities=22%  Similarity=0.389  Sum_probs=74.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++.              ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   67 (222)
T PRK10908          2 IRFEHVSKAYLGG--------------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT   67 (222)
T ss_pred             EEEEeeEEEecCC--------------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            6789999999422              15999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc--cHHHhhccEEEEccCCCc
Q 010435          487 SSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...  +....|+.+||+||+..+
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~   90 (222)
T PRK10908         68 RLKNREVPFLRRQIGMIFQDHHL   90 (222)
T ss_pred             cCChhHHHHHHhheEEEecCccc
Confidence            311  233467899999998643

>PLN03140 ABC transporter G family member; Provisional

Probab=99.69  E-value=9.4e-15  Score=173.50  Aligned_cols=97  Identities=21%  Similarity=0.280  Sum_probs=74.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcC
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYG  482 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g  482 (510)
                      ..+.++||+...+......  ....+++.+.+++|+|+.+++||+++|+||||||||||+++|+|..++  .+|++.++|
T Consensus       866 ~~~~~~~v~y~v~~~~~~~--~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG  943 (1470)
T PLN03140        866 LAMSFDDVNYFVDMPAEMK--EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG  943 (1470)
T ss_pred             ceEEEEEEEEEEccCcccc--ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence            4689999998875321100  000111234699999999999999999999999999999999999764  689999999


Q ss_pred             eecCCcccHHHhhccEEEEccCCCc
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++..    ....++.+|||+|.|.+
T Consensus       944 ~~~~----~~~~~~~igyv~Q~d~~  964 (1470)
T PLN03140        944 FPKK----QETFARISGYCEQNDIH  964 (1470)
T ss_pred             ccCC----hHHhhhheEEEcccccc
Confidence            8863    13457789999999865

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.69  E-value=5.9e-17  Score=153.29  Aligned_cols=90  Identities=19%  Similarity=0.384  Sum_probs=78.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||++.|+++..           ..+||++|||++.+||++||+|++||||||+.++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~v~nl~~~y~~~~~-----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~   71 (252)
T COG1124           3 LLSVRNLSIVYGGGKF-----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL   71 (252)
T ss_pred             eEEEeceEEEecCCcc-----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence            5899999999976532           12699999999999999999999999999999999999999999999999877


Q ss_pred             CCcccHHHhhccEEEEccCCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ......+..++.+.+++|+.-
T Consensus        72 ~~~~~~~~~~~~VQmVFQDp~   92 (252)
T COG1124          72 APKKRAKAFYRPVQMVFQDPY   92 (252)
T ss_pred             CccccchhhccceeEEecCCc
Confidence            543334467889999999874

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=8.5e-17  Score=160.42  Aligned_cols=85  Identities=27%  Similarity=0.412  Sum_probs=75.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|++.              ..+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         4 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   69 (274)
T PRK13647          4 IIEVEDLHFRYKDG--------------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV   69 (274)
T ss_pred             eEEEEEEEEEeCCC--------------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            58999999999532              1599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .. ....+.++.+||+||..
T Consensus        70 ~~-~~~~~~~~~i~~v~q~~   88 (274)
T PRK13647         70 NA-ENEKWVRSKVGLVFQDP   88 (274)
T ss_pred             CC-CCHHHHHhhEEEEecCh
Confidence            53 33456678899999975

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.69  E-value=5.4e-17  Score=158.61  Aligned_cols=83  Identities=25%  Similarity=0.436  Sum_probs=72.4

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         3 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (239)
T cd03296           3 IEVRNVSKRFGDF---------------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT   67 (239)
T ss_pred             EEEEeEEEEECCE---------------EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            7899999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ...++.+||+||...+
T Consensus        68 ~~---~~~~~~i~~v~q~~~~   85 (239)
T cd03296          68 DV---PVQERNVGFVFQHYAL   85 (239)
T ss_pred             cC---CccccceEEEecCCcc
Confidence            21   1235789999998643

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=9e-17  Score=159.49  Aligned_cols=87  Identities=22%  Similarity=0.361  Sum_probs=76.2

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..+++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus         9 ~~~l~i~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~   73 (265)
T PRK10575          9 DTTFALRNVSFRVPGR---------------TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ   73 (265)
T ss_pred             CceEEEeeEEEEECCE---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence            3469999999999532               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ++.. ...++.|+.+||+||...
T Consensus        74 ~~~~-~~~~~~~~~i~~v~q~~~   95 (265)
T PRK10575         74 PLES-WSSKAFARKVAYLPQQLP   95 (265)
T ss_pred             ehhh-CCHHHHhhheEEeccCCC
Confidence            8742 234566788999999753

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1e-16  Score=160.57  Aligned_cols=87  Identities=30%  Similarity=0.470  Sum_probs=75.8

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++              +.+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         4 ~~l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~   69 (283)
T PRK13636          4 YILKVEELNYNYSDG--------------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP   69 (283)
T ss_pred             ceEEEEeEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE
Confidence            368999999999532              159999999999999999999999999999999999999999999999999


Q ss_pred             cCC-cccHHHhhccEEEEccCC
Q 010435          485 IRS-SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~-~~~~~~~r~~iG~cpQ~~  505 (510)
                      +.. ..+..+.|+.+||+||..
T Consensus        70 ~~~~~~~~~~~~~~ig~v~q~~   91 (283)
T PRK13636         70 IDYSRKGLMKLRESVGMVFQDP   91 (283)
T ss_pred             CCCCcchHHHHHhhEEEEecCc
Confidence            841 123456788999999975

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=8.5e-17  Score=161.71  Aligned_cols=89  Identities=19%  Similarity=0.318  Sum_probs=75.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++...          ....+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         3 l~~~~l~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (290)
T PRK13634          3 ITFQKVEHRYQYKTP----------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT   72 (290)
T ss_pred             EEEEEEEEEECCCCc----------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            789999999964310          0125999999999999999999999999999999999999999999999999984


Q ss_pred             C---cccHHHhhccEEEEccCC
Q 010435          487 S---SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~---~~~~~~~r~~iG~cpQ~~  505 (510)
                      .   .....+.|+.+|||||..
T Consensus        73 ~~~~~~~~~~~~~~ig~v~q~~   94 (290)
T PRK13634         73 AGKKNKKLKPLRKKVGIVFQFP   94 (290)
T ss_pred             cccccchHHHHHhhEEEEeeCc
Confidence            2   123556788999999974

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.69  E-value=6.8e-17  Score=157.61  Aligned_cols=87  Identities=14%  Similarity=0.264  Sum_probs=74.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++..             ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (237)
T cd03252           1 ITFEHVRFRYKPDG-------------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA   67 (237)
T ss_pred             CEEEEEEEecCCCC-------------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence            46889999996421             15999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+..+.|+.+||+||+..+
T Consensus        68 ~-~~~~~~~~~i~~~~q~~~~   87 (237)
T cd03252          68 L-ADPAWLRRQVGVVLQENVL   87 (237)
T ss_pred             h-cCHHHHhhcEEEEcCCchh
Confidence            2 3345678899999998644

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.1e-16  Score=160.21  Aligned_cols=92  Identities=15%  Similarity=0.332  Sum_probs=76.8

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|++...         ...+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         3 ~~l~~~~l~~~~~~~~~---------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~   73 (280)
T PRK13633          3 EMIKCKNVSYKYESNEE---------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD   73 (280)
T ss_pred             ceEEEeeeEEEcCCCCC---------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence            35899999999964310         012359999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +.......+.|+.+|||||..
T Consensus        74 i~~~~~~~~~~~~i~~v~q~~   94 (280)
T PRK13633         74 TSDEENLWDIRNKAGMVFQNP   94 (280)
T ss_pred             ccccccHHHHhhheEEEecCh
Confidence            853222356688999999975

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=7.1e-17  Score=166.36  Aligned_cols=85  Identities=24%  Similarity=0.508  Sum_probs=74.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|++.              +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~i~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i   68 (356)
T PRK11650          3 GLKLQAVRKSYDGK--------------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV   68 (356)
T ss_pred             EEEEEeEEEEeCCC--------------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC
Confidence            48899999999422              1599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+   ....++.+|||||+..|
T Consensus        69 ~~---~~~~~r~ig~v~Q~~~l   87 (356)
T PRK11650         69 NE---LEPADRDIAMVFQNYAL   87 (356)
T ss_pred             CC---CCHHHCCEEEEeCCccc
Confidence            53   22345799999998765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.69  E-value=8.1e-17  Score=158.12  Aligned_cols=87  Identities=25%  Similarity=0.459  Sum_probs=75.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i  480 (510)
                      +++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|+     +|+|.+
T Consensus         1 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~   65 (247)
T TIGR00972         1 AIEIENLNLFYGEK---------------EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF   65 (247)
T ss_pred             CEEEEEEEEEECCe---------------eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence            36899999999642               5999999999999999999999999999999999999998     999999


Q ss_pred             cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++... .+....|+.+||+||+..+
T Consensus        66 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~   93 (247)
T TIGR00972        66 DGQDIYDKKIDVVELRRRVGMVFQKPNP   93 (247)
T ss_pred             CCEEccccccchHHHHhheEEEecCccc
Confidence            99998421 1345668899999998643

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.1e-16  Score=160.02  Aligned_cols=85  Identities=27%  Similarity=0.478  Sum_probs=74.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++.              ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         3 ~l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   68 (277)
T PRK13652          3 LIETRDLCYSYSGS--------------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI   68 (277)
T ss_pred             eEEEEEEEEEeCCC--------------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            47899999999532              1499999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .. ...++.++.+|||||++
T Consensus        69 ~~-~~~~~~~~~i~~v~q~~   87 (277)
T PRK13652         69 TK-ENIREVRKFVGLVFQNP   87 (277)
T ss_pred             Cc-CCHHHHHhheEEEecCc
Confidence            53 23456788999999985

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.69  E-value=8.2e-17  Score=150.17  Aligned_cols=86  Identities=22%  Similarity=0.388  Sum_probs=73.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++..             ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 i~~~~~~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (178)
T cd03247           1 LSINNVSFSYPEQE-------------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS   67 (178)
T ss_pred             CEEEEEEEEeCCCC-------------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence            36789999996421             14899999999999999999999999999999999999999999999999873


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . . ....|+.+|||||+..+
T Consensus        68 ~-~-~~~~~~~i~~~~q~~~~   86 (178)
T cd03247          68 D-L-EKALSSLISVLNQRPYL   86 (178)
T ss_pred             H-H-HHHHHhhEEEEccCCee
Confidence            2 1 34567889999998644

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.69  E-value=5.7e-17  Score=155.20  Aligned_cols=81  Identities=32%  Similarity=0.541  Sum_probs=71.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (210)
T cd03269           1 LEVENVTKRFGRV---------------TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD   65 (210)
T ss_pred             CEEEEEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence            3688999999532               5999999999999999999999999999999999999999999999998873


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .     ..++.+|||||...+
T Consensus        66 ~-----~~~~~i~~~~q~~~~   81 (210)
T cd03269          66 I-----AARNRIGYLPEERGL   81 (210)
T ss_pred             H-----HHHccEEEeccCCcC
Confidence            1     457789999998643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.69  E-value=8.2e-17  Score=155.97  Aligned_cols=88  Identities=22%  Similarity=0.330  Sum_probs=74.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++..           +...+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   70 (228)
T cd03257           2 LEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL   70 (228)
T ss_pred             eEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            67899999996421           0125899999999999999999999999999999999999999999999999985


Q ss_pred             Cccc--HHHhhccEEEEccCC
Q 010435          487 SSVS--MTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~~~~--~~~~r~~iG~cpQ~~  505 (510)
                      ....  ....|+.+||+||+.
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~   91 (228)
T cd03257          71 KLSRRLRKIRRKEIQMVFQDP   91 (228)
T ss_pred             ccchhhHHHhhccEEEEecCc
Confidence            3111  245678999999986

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=9e-17  Score=165.10  Aligned_cols=90  Identities=24%  Similarity=0.489  Sum_probs=75.4

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++..           +.+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 i~i~~l~~~y~~~~-----------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~   70 (343)
T PRK11153          2 IELKNISKVFPQGG-----------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT   70 (343)
T ss_pred             EEEEeEEEEeCCCC-----------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            68999999996311           0126999999999999999999999999999999999999999999999999985


Q ss_pred             Cc--ccHHHhhccEEEEccCCCc
Q 010435          487 SS--VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~--~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..  .+....|+.+||+||+..+
T Consensus        71 ~~~~~~~~~~~~~ig~v~q~~~l   93 (343)
T PRK11153         71 ALSEKELRKARRQIGMIFQHFNL   93 (343)
T ss_pred             cCCHHHHHHHhcCEEEEeCCCcc
Confidence            31  1233457899999998644

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.69  E-value=9.2e-17  Score=154.17  Aligned_cols=87  Identities=24%  Similarity=0.421  Sum_probs=73.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++.              +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~--------------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   66 (214)
T cd03292           1 IEFINVTKTYPNG--------------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS   66 (214)
T ss_pred             CEEEEEEEEeCCC--------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence            3688999999542              15999999999999999999999999999999999999999999999999885


Q ss_pred             Ccc--cHHHhhccEEEEccCCCc
Q 010435          487 SSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...  +....|+.++|+||...+
T Consensus        67 ~~~~~~~~~~~~~i~~v~q~~~~   89 (214)
T cd03292          67 DLRGRAIPYLRRKIGVVFQDFRL   89 (214)
T ss_pred             cCCHHHHHHHHHheEEEecCchh
Confidence            321  234567899999998643

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.3e-16  Score=162.16  Aligned_cols=92  Identities=14%  Similarity=0.369  Sum_probs=77.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|+++.|++...          ....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.
T Consensus        19 ~~~l~~~nl~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~   88 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQE----------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI   88 (320)
T ss_pred             CceEEEEeEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCE
Confidence            356999999999964210          1125999999999999999999999999999999999999999999999999


Q ss_pred             ecCCc---------------ccHHHhhccEEEEccCC
Q 010435          484 SIRSS---------------VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~---------------~~~~~~r~~iG~cpQ~~  505 (510)
                      ++.+.               .+....|+.+|||||..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~  125 (320)
T PRK13631         89 YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP  125 (320)
T ss_pred             EcccccccccccccccccccchHHHHHhcEEEEEECc
Confidence            87431               13456789999999975

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.69  E-value=8.3e-17  Score=156.60  Aligned_cols=90  Identities=26%  Similarity=0.494  Sum_probs=74.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|+++.           +..++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   70 (233)
T cd03258           2 IELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLT   70 (233)
T ss_pred             eEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            67899999996421           0125999999999999999999999999999999999999999999999999985


Q ss_pred             Ccc--cHHHhhccEEEEccCCCc
Q 010435          487 SSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...  +..+.++.+||+||...+
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~   93 (233)
T cd03258          71 LLSGKELRKARRRIGMIFQHFNL   93 (233)
T ss_pred             cCCHHHHHHHHhheEEEccCccc
Confidence            311  123457889999998654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.68  E-value=8.6e-17  Score=156.88  Aligned_cols=84  Identities=26%  Similarity=0.435  Sum_probs=72.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~   66 (236)
T TIGR03864         2 LEVAGLSFAYGAR---------------RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR   66 (236)
T ss_pred             EEEEeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence            6789999999532               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .. ...++.+||+||...+
T Consensus        67 ~-~~-~~~~~~i~~~~q~~~~   85 (236)
T TIGR03864        67 R-AP-RAALARLGVVFQQPTL   85 (236)
T ss_pred             c-CC-hhhhhhEEEeCCCCCC
Confidence            3 12 2345689999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.68  E-value=4.9e-17  Score=164.39  Aligned_cols=71  Identities=37%  Similarity=0.635  Sum_probs=64.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..  ...++|+.+|||||+..+
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~~~q~~~~   77 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR--EPRKVRRSIGIVPQYASV   77 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--CHHHHHhhcEEecCCCCC
Confidence            69999999999999999999999999999999999999999999999999843  345678899999998754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.68  E-value=6e-17  Score=155.39  Aligned_cols=83  Identities=29%  Similarity=0.467  Sum_probs=71.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~   65 (213)
T cd03301           1 VELENVTKRFGNV---------------TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT   65 (213)
T ss_pred             CEEEeeEEEECCe---------------eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            4688999999642               5999999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ...++.+||+||+..+
T Consensus        66 ~~---~~~~~~i~~~~q~~~~   83 (213)
T cd03301          66 DL---PPKDRDIAMVFQNYAL   83 (213)
T ss_pred             cC---CcccceEEEEecChhh
Confidence            21   1234689999998643

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=9.6e-17  Score=159.81  Aligned_cols=84  Identities=20%  Similarity=0.311  Sum_probs=73.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   66 (271)
T PRK13638          2 LATSDLWFRYQDE---------------PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD   66 (271)
T ss_pred             eEEEEEEEEcCCc---------------ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc
Confidence            6789999999542               5999999999999999999999999999999999999999999999999984


Q ss_pred             C-cccHHHhhccEEEEccCC
Q 010435          487 S-SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~-~~~~~~~r~~iG~cpQ~~  505 (510)
                      . ..+....|+.+||+||+.
T Consensus        67 ~~~~~~~~~~~~i~~v~q~~   86 (271)
T PRK13638         67 YSKRGLLALRQQVATVFQDP   86 (271)
T ss_pred             cccCCHHHHHhheEEEeeCh
Confidence            1 123446678999999975

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.2e-16  Score=160.53  Aligned_cols=90  Identities=13%  Similarity=0.329  Sum_probs=75.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++...          ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         2 ~i~~~~l~~~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~   71 (287)
T PRK13641          2 SIKFENVDYIYSPGTP----------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI   71 (287)
T ss_pred             EEEEEEEEEEcCCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            4789999999964210          012599999999999999999999999999999999999999999999999988


Q ss_pred             CCc---ccHHHhhccEEEEccCC
Q 010435          486 RSS---VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~---~~~~~~r~~iG~cpQ~~  505 (510)
                      ...   .+..+.++.+||+||..
T Consensus        72 ~~~~~~~~~~~~~~~ig~v~q~~   94 (287)
T PRK13641         72 TPETGNKNLKKLRKKVSLVFQFP   94 (287)
T ss_pred             ccccccchHHHHHhceEEEEeCh
Confidence            421   12456678999999974

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.68  E-value=1.2e-16  Score=157.89  Aligned_cols=86  Identities=23%  Similarity=0.422  Sum_probs=75.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~   66 (258)
T PRK13548          2 MLEARNLSVRLGGR---------------TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL   66 (258)
T ss_pred             eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence            47899999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. ....+.++.+||+||...+
T Consensus        67 ~~-~~~~~~~~~i~~~~q~~~~   87 (258)
T PRK13548         67 AD-WSPAELARRRAVLPQHSSL   87 (258)
T ss_pred             cc-CCHHHhhhheEEEccCCcC
Confidence            42 2344567789999998654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.68  E-value=6.4e-17  Score=154.33  Aligned_cols=84  Identities=18%  Similarity=0.317  Sum_probs=70.6

Q ss_pred             EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (510)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~  488 (510)
                      ++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus         1 i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~   65 (206)
T TIGR03608         1 LKNISKKFGDK---------------IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPL   65 (206)
T ss_pred             CcceEEEECCE---------------EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccc
Confidence            46888998532               599999999999999999999999999999999999999999999999986321


Q ss_pred             cc---HHHhhccEEEEccCCCc
Q 010435          489 VS---MTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       489 ~~---~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ....++.+|||+|...+
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~   87 (206)
T TIGR03608        66 NSKKASKFRREKLGYLFQNFAL   87 (206)
T ss_pred             chhhHHHHHHhCeeEEecchhh
Confidence            11   23457789999998643

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.68  E-value=1e-16  Score=159.12  Aligned_cols=88  Identities=20%  Similarity=0.328  Sum_probs=76.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...+++++++|.|++.               .+++++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus         5 ~~~l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~   69 (265)
T PRK10253          5 VARLRGEQLTLGYGKY---------------TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE   69 (265)
T ss_pred             ccEEEEEEEEEEECCE---------------EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence            3579999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.. ....+.++.+|||||...+
T Consensus        70 ~~~~-~~~~~~~~~i~~v~q~~~~   92 (265)
T PRK10253         70 HIQH-YASKEVARRIGLLAQNATT   92 (265)
T ss_pred             Ehhh-CCHHHHhhheEEeeccCcC
Confidence            8842 2345567789999998643

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.6e-16  Score=154.73  Aligned_cols=91  Identities=20%  Similarity=0.394  Sum_probs=74.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +.+++++++|.|+++.           +...+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus         4 ~~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~   72 (233)
T PRK11629          4 ILLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP   72 (233)
T ss_pred             ceEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence            3589999999996421           01259999999999999999999999999999999999999999999999999


Q ss_pred             cCCccc--HHHhh-ccEEEEccCCC
Q 010435          485 IRSSVS--MTNIQ-KSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~--~~~~r-~~iG~cpQ~~~  506 (510)
                      +.....  ..+.| +.+||+||+..
T Consensus        73 i~~~~~~~~~~~~~~~i~~v~q~~~   97 (233)
T PRK11629         73 MSKLSSAAKAELRNQKLGFIYQFHH   97 (233)
T ss_pred             cCcCCHHHHHHHHhccEEEEecCcc
Confidence            853111  12233 67999999853

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.68  E-value=8.7e-17  Score=155.11  Aligned_cols=84  Identities=23%  Similarity=0.459  Sum_probs=71.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++..           ..+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   69 (220)
T cd03293           1 LEVRNVSKTYGGGG-----------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT   69 (220)
T ss_pred             CeEEEEEEEcCCCC-----------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence            46899999996421           0126999999999999999999999999999999999999999999999999873


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                            ..++.+||+||...+
T Consensus        70 ------~~~~~i~~v~q~~~~   84 (220)
T cd03293          70 ------GPGPDRGYVFQQDAL   84 (220)
T ss_pred             ------cccCcEEEEeccccc
Confidence                  236789999997643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.68  E-value=1.1e-16  Score=158.19  Aligned_cols=83  Identities=23%  Similarity=0.361  Sum_probs=73.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   66 (256)
T TIGR03873         2 LRLSRVSWSAGGR---------------LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH   66 (256)
T ss_pred             ceEEeEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc
Confidence            6889999999542               5999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCC
Q 010435          487 SSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~  505 (510)
                      . ...+..++.+||+||..
T Consensus        67 ~-~~~~~~~~~i~~~~q~~   84 (256)
T TIGR03873        67 G-LSRRARARRVALVEQDS   84 (256)
T ss_pred             c-CCHHHHhhheEEecccC
Confidence            3 23456677899999986

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.3e-16  Score=159.43  Aligned_cols=87  Identities=18%  Similarity=0.392  Sum_probs=76.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|+++.|++..            ...+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         4 ~l~~~~l~~~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   71 (279)
T PRK13650          4 IIEVKNLTFKYKEDQ------------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL   71 (279)
T ss_pred             eEEEEeEEEEcCCCC------------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            589999999996421            12599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .. ....+.|+.+||+||..
T Consensus        72 ~~-~~~~~~~~~i~~v~q~~   90 (279)
T PRK13650         72 TE-ENVWDIRHKIGMVFQNP   90 (279)
T ss_pred             Cc-CcHHHHHhhceEEEcCh
Confidence            53 34556788999999975

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.4e-16  Score=157.15  Aligned_cols=87  Identities=30%  Similarity=0.485  Sum_probs=74.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         5 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   69 (255)
T PRK11300          5 LLSVSGLMMRFGGL---------------LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI   69 (255)
T ss_pred             eEEEeeEEEEECCE---------------EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEEC
Confidence            58999999999532               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ......+..+..++|+||.+.+
T Consensus        70 ~~~~~~~~~~~~i~~~~q~~~~   91 (255)
T PRK11300         70 EGLPGHQIARMGVVRTFQHVRL   91 (255)
T ss_pred             CCCCHHHHHhcCeEEeccCccc
Confidence            5322223345679999998644

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.68  E-value=1.5e-16  Score=148.88  Aligned_cols=80  Identities=20%  Similarity=0.375  Sum_probs=71.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|                   +++++||++++||+++|+|+|||||||++++|+|+++|++|++.++|.++
T Consensus         4 ~l~~~~l~~~~-------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (182)
T cd03215           4 VLEVRGLSVKG-------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV   64 (182)
T ss_pred             EEEEeccEEEe-------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence            58899998877                   69999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccC
Q 010435          486 RSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~  504 (510)
                      ......+..|+.+|||||.
T Consensus        65 ~~~~~~~~~~~~i~~~~q~   83 (182)
T cd03215          65 TRRSPRDAIRAGIAYVPED   83 (182)
T ss_pred             CccCHHHHHhCCeEEecCC
Confidence            5322234567899999997

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.68  E-value=1.2e-16  Score=154.25  Aligned_cols=87  Identities=17%  Similarity=0.394  Sum_probs=76.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++..             +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   69 (221)
T cd03244           3 IEFKNVSLRYRPNL-------------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS   69 (221)
T ss_pred             EEEEEEEEecCCCC-------------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH
Confidence            78999999996431             15999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+..+.++.+||+||...+
T Consensus        70 ~-~~~~~~~~~i~~~~q~~~l   89 (221)
T cd03244          70 K-IGLHDLRSRISIIPQDPVL   89 (221)
T ss_pred             h-CCHHHHhhhEEEECCCCcc
Confidence            2 3455678899999998643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.68  E-value=1e-16  Score=156.09  Aligned_cols=87  Identities=23%  Similarity=0.529  Sum_probs=74.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++..             +.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (234)
T cd03251           1 VEFKNVTFRYPGDG-------------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR   67 (234)
T ss_pred             CEEEEEEEEeCCCC-------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence            46899999996431             15899999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . ....+.++.+||+||+..+
T Consensus        68 ~-~~~~~~~~~i~~~~q~~~~   87 (234)
T cd03251          68 D-YTLASLRRQIGLVSQDVFL   87 (234)
T ss_pred             h-CCHHHHHhhEEEeCCCCee
Confidence            2 2345678889999998644

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.68  E-value=1.3e-16  Score=158.76  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=75.2

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus         6 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   70 (269)
T PRK11831          6 NLVDMRGVSFTRGNR---------------CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN   70 (269)
T ss_pred             ceEEEeCeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence            468999999999532               59999999999999999999999999999999999999999999999998


Q ss_pred             cCCcc--cHHHhhccEEEEccCCCc
Q 010435          485 IRSSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      +....  +....++.+||+||...+
T Consensus        71 i~~~~~~~~~~~~~~i~~v~q~~~~   95 (269)
T PRK11831         71 IPAMSRSRLYTVRKRMSMLFQSGAL   95 (269)
T ss_pred             ccccChhhHHHHhhcEEEEeccccc
Confidence            74211  223457789999998543

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.68  E-value=1.1e-16  Score=155.27  Aligned_cols=87  Identities=28%  Similarity=0.435  Sum_probs=75.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|+++.|++.              +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (229)
T cd03254           2 EIEFENVNFSYDEK--------------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI   67 (229)
T ss_pred             eEEEEEEEEecCCC--------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence            37899999999632              1499999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. .+..+.|+.+|||||...+
T Consensus        68 ~~-~~~~~~~~~i~~~~q~~~~   88 (229)
T cd03254          68 RD-ISRKSLRSMIGVVLQDTFL   88 (229)
T ss_pred             HH-cCHHHHhhhEEEecCCchh
Confidence            42 3445678889999998643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.68  E-value=1e-16  Score=156.92  Aligned_cols=86  Identities=26%  Similarity=0.525  Sum_probs=73.4

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|+++              ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (243)
T TIGR02315         2 LEVENLSKVYPNG--------------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT   67 (243)
T ss_pred             eEEEeeeeecCCC--------------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence            6789999999621              15999999999999999999999999999999999999999999999999874


Q ss_pred             Ccc--cHHHhhccEEEEccCCC
Q 010435          487 SSV--SMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~  506 (510)
                      ...  +....|+.+||+||...
T Consensus        68 ~~~~~~~~~~~~~i~~v~q~~~   89 (243)
T TIGR02315        68 KLRGKKLRKLRRRIGMIFQHYN   89 (243)
T ss_pred             hCCHHHHHHHHhheEEEcCCCc
Confidence            211  23346788999999864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.68  E-value=1.5e-16  Score=157.23  Aligned_cols=88  Identities=16%  Similarity=0.331  Sum_probs=76.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..+++++|++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|++.++|.+
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~   68 (257)
T PRK10619          4 NKLNVIDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT   68 (257)
T ss_pred             ccEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence            358999999999642               59999999999999999999999999999999999999999999999998


Q ss_pred             cCC------------cccHHHhhccEEEEccCCCc
Q 010435          485 IRS------------SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~------------~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +..            ..+....|+.+||+||++.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l  103 (257)
T PRK10619         69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  103 (257)
T ss_pred             cccccccccccccccchHHHHHhhceEEEecCccc
Confidence            731            01235668899999998754

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.68  E-value=1.3e-16  Score=154.61  Aligned_cols=91  Identities=18%  Similarity=0.360  Sum_probs=77.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++++++.|+++.            .+.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.
T Consensus         9 ~~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~   76 (226)
T cd03248           9 KGIVKFQNVTFAYPTRP------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK   76 (226)
T ss_pred             CceEEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC
Confidence            45799999999996531            125999999999999999999999999999999999999999999999998


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.. .+....++.+|||||...+
T Consensus        77 ~~~~-~~~~~~~~~i~~~~q~~~l   99 (226)
T cd03248          77 PISQ-YEHKYLHSKVSLVGQEPVL   99 (226)
T ss_pred             chHH-cCHHHHHhhEEEEecccHH
Confidence            8742 2344567889999998643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.68  E-value=1.5e-16  Score=153.42  Aligned_cols=90  Identities=23%  Similarity=0.429  Sum_probs=73.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++..           +...+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   70 (221)
T TIGR02211         2 LKCENLGKRYQEGK-----------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS   70 (221)
T ss_pred             EEEEeeeEEccCCC-----------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence            67899999996421           0125999999999999999999999999999999999999999999999999874


Q ss_pred             Ccc--cHHHhh-ccEEEEccCCCc
Q 010435          487 SSV--SMTNIQ-KSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r-~~iG~cpQ~~~L  507 (510)
                      ...  +....| +.+||+||...+
T Consensus        71 ~~~~~~~~~~~~~~i~~v~q~~~~   94 (221)
T TIGR02211        71 KLSSNERAKLRNKKLGFIYQFHHL   94 (221)
T ss_pred             hcCHhHHHHHHHhcEEEEeccccc
Confidence            311  112234 689999998643

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=1.6e-16  Score=157.98  Aligned_cols=89  Identities=21%  Similarity=0.437  Sum_probs=76.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      +..++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++     |++|+|
T Consensus        11 ~~~l~i~nl~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v   75 (269)
T PRK14259         11 NIIISLQNVTISYGTF---------------EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV   75 (269)
T ss_pred             CceEEEEeEEEEECCE---------------EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            3569999999999542               59999999999999999999999999999999999987     699999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.. ..+..+.|+.+||+||+..+
T Consensus        76 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l  105 (269)
T PRK14259         76 LFDGTDLYDPRVDPVEVRRRIGMVFQQPNP  105 (269)
T ss_pred             EECCEEcccccCCHHHHhhceEEEccCCcc
Confidence            999998742 12345678899999998643

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.3e-16  Score=156.86  Aligned_cols=89  Identities=22%  Similarity=0.436  Sum_probs=75.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      +..++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        19 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   83 (268)
T PRK14248         19 EHILEVKDLSIYYGEK---------------RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI   83 (268)
T ss_pred             CceEEEEEEEEEeCCc---------------eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence            4569999999999642               59999999999999999999999999999999999864     799999


Q ss_pred             EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++... .+....++.+||+||+..+
T Consensus        84 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  113 (268)
T PRK14248         84 LYEGLNILDSNINVVNLRREIGMVFQKPNP  113 (268)
T ss_pred             EECCEEcccccccHHHHhccEEEEecCCcc
Confidence            9999998421 2234567899999998643

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.68  E-value=9.6e-17  Score=153.77  Aligned_cols=83  Identities=31%  Similarity=0.534  Sum_probs=72.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++|+||++++| +++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~~~~~~~~~---------------~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   64 (211)
T cd03264           1 LQLENLTKRYGKK---------------RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL   64 (211)
T ss_pred             CEEEEEEEEECCE---------------EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc
Confidence            4688999999542               5999999999999 99999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .. .+.++.+||+||+..+
T Consensus        65 ~-~~-~~~~~~i~~~~q~~~~   83 (211)
T cd03264          65 K-QP-QKLRRRIGYLPQEFGV   83 (211)
T ss_pred             c-ch-HHHHhheEEecCCCcc
Confidence            3 22 5668899999998643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=1.8e-16  Score=158.64  Aligned_cols=90  Identities=20%  Similarity=0.324  Sum_probs=75.5

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|++...          ..+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i   71 (280)
T PRK13649          2 GINLQNVSYTYQAGTP----------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI   71 (280)
T ss_pred             eEEEEEEEEEcCCCCc----------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            3789999999964210          012599999999999999999999999999999999999999999999999988


Q ss_pred             CCc---ccHHHhhccEEEEccCC
Q 010435          486 RSS---VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~---~~~~~~r~~iG~cpQ~~  505 (510)
                      ...   .+..+.|+.+||+||..
T Consensus        72 ~~~~~~~~~~~~~~~i~~~~q~~   94 (280)
T PRK13649         72 TSTSKNKDIKQIRKKVGLVFQFP   94 (280)
T ss_pred             cccccccCHHHHHhheEEEeeCh
Confidence            431   23456788999999974

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=1.9e-16  Score=159.04  Aligned_cols=89  Identities=20%  Similarity=0.333  Sum_probs=75.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++...          ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 i~~~~v~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   71 (288)
T PRK13643          2 IKFEKVNYTYQPNSP----------FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS   71 (288)
T ss_pred             EEEEEEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            689999999964210          0125999999999999999999999999999999999999999999999999984


Q ss_pred             C---cccHHHhhccEEEEccCC
Q 010435          487 S---SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~---~~~~~~~r~~iG~cpQ~~  505 (510)
                      .   .....+.|+.+||++|++
T Consensus        72 ~~~~~~~~~~~~~~ig~v~q~~   93 (288)
T PRK13643         72 STSKQKEIKPVRKKVGVVFQFP   93 (288)
T ss_pred             cccccccHHHHHhhEEEEecCc
Confidence            2   123556788999999975

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.67  E-value=1.3e-16  Score=152.44  Aligned_cols=83  Identities=23%  Similarity=0.341  Sum_probs=73.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|+++               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (207)
T PRK13539          2 MLEGEDLACVRGGR---------------VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI   66 (207)
T ss_pred             EEEEEeEEEEECCe---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence            37899999999542               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   . ..++.+||++|.+.+
T Consensus        67 ~~---~-~~~~~~~~~~~~~~~   84 (207)
T PRK13539         67 DD---P-DVAEACHYLGHRNAM   84 (207)
T ss_pred             cc---h-hhHhhcEEecCCCcC
Confidence            31   1 278889999987644

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.67  E-value=5.9e-17  Score=155.48  Aligned_cols=78  Identities=24%  Similarity=0.531  Sum_probs=69.2

Q ss_pred             EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (510)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~  488 (510)
                      ++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.  
T Consensus         2 ~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--   64 (213)
T cd03235           2 VEDLTVSYGGH---------------PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE--   64 (213)
T ss_pred             cccceeEECCE---------------EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--
Confidence            57889999532               5999999999999999999999999999999999999999999999998762  


Q ss_pred             ccHHHhhccEEEEccCCCc
Q 010435          489 VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       489 ~~~~~~r~~iG~cpQ~~~L  507 (510)
                          ..|+.+||+||+..+
T Consensus        65 ----~~~~~i~~v~q~~~~   79 (213)
T cd03235          65 ----KERKRIGYVPQRRSI   79 (213)
T ss_pred             ----HHHhheEEecccccc
Confidence                457789999997643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.67  E-value=1.9e-16  Score=152.19  Aligned_cols=85  Identities=19%  Similarity=0.216  Sum_probs=74.3

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|++|.|+++               .+++++||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.
T Consensus         9 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~   73 (214)
T PRK13543          9 PPLLAAHALAFSRNEE---------------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK   73 (214)
T ss_pred             cceEEEeeEEEecCCc---------------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE
Confidence            3469999999999542               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++..    .+.++.+||++|.+.+
T Consensus        74 ~i~~----~~~~~~i~~~~q~~~~   93 (214)
T PRK13543         74 TATR----GDRSRFMAYLGHLPGL   93 (214)
T ss_pred             Eccc----hhhhhceEEeecCccc
Confidence            8842    1345679999997643

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.8e-17  Score=151.28  Aligned_cols=85  Identities=22%  Similarity=0.439  Sum_probs=77.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++.               .+++++|+++++|.+++++||||||||||++|++++.++++|+|+|+|+++.
T Consensus         2 I~i~nv~K~y~~~---------------~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~   66 (252)
T COG4604           2 ITIENVSKSYGTK---------------VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT   66 (252)
T ss_pred             eeehhhhHhhCCE---------------EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecc
Confidence            6789999999653               6999999999999999999999999999999999999999999999999997


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      + ++.+++.+.+.+.-|.|.+
T Consensus        67 ~-~~s~~LAk~lSILkQ~N~i   86 (252)
T COG4604          67 S-TPSKELAKKLSILKQENHI   86 (252)
T ss_pred             c-CChHHHHHHHHHHHhhchh
Confidence            4 6677888888888887754

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.67  E-value=1.9e-16  Score=156.37  Aligned_cols=83  Identities=17%  Similarity=0.307  Sum_probs=73.6

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus        10 ~~~l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~   74 (257)
T PRK11247         10 GTPLLLNAVSKRYGER---------------TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA   74 (257)
T ss_pred             CCcEEEEEEEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence            3569999999999642               5999999999999999999999999999999999999999999999987


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++      ...++.+||+||...+
T Consensus        75 ~~------~~~~~~i~~v~q~~~l   92 (257)
T PRK11247         75 PL------AEAREDTRLMFQDARL   92 (257)
T ss_pred             EH------HHhhCceEEEecCccC
Confidence            65      2457889999998643

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=1.8e-16  Score=156.22  Aligned_cols=87  Identities=25%  Similarity=0.487  Sum_probs=74.5

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i  480 (510)
                      .+++++++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|+     +|+|.+
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~   68 (253)
T PRK14267          4 AIETVNLRVYYGSN---------------HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL   68 (253)
T ss_pred             eEEEEeEEEEeCCe---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence            58999999999542               5999999999999999999999999999999999999874     999999


Q ss_pred             cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++.. ..+..+.|+.+||+||++.+
T Consensus        69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (253)
T PRK14267         69 FGRNIYSPDVDPIEVRREVGMVFQYPNP   96 (253)
T ss_pred             CCEEccccccChHHHhhceeEEecCCcc
Confidence            9999841 11234567899999998643

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.67  E-value=1.6e-16  Score=164.61  Aligned_cols=86  Identities=27%  Similarity=0.492  Sum_probs=75.6

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++|++|.|++.               .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus        12 ~~~L~l~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~   76 (375)
T PRK09452         12 SPLVELRGISKSFDGK---------------EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ   76 (375)
T ss_pred             CceEEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence            3468999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+   ....++.+||+||...|
T Consensus        77 ~i~~---~~~~~r~ig~vfQ~~~l   97 (375)
T PRK09452         77 DITH---VPAENRHVNTVFQSYAL   97 (375)
T ss_pred             ECCC---CCHHHCCEEEEecCccc
Confidence            9843   22346789999998754

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.67  E-value=1.9e-16  Score=156.00  Aligned_cols=88  Identities=24%  Similarity=0.461  Sum_probs=75.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ++.++++++++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus         4 ~~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   68 (253)
T PRK14242          4 PPKMEARGLSFFYGDF---------------QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI   68 (253)
T ss_pred             CcEEEEeeeEEEECCe---------------eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE
Confidence            4579999999999532               59999999999999999999999999999999999964     689999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCC
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .++|.++.. ..+....|+.+||+||...
T Consensus        69 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~   97 (253)
T PRK14242         69 LLDGENIYDPHVDVVELRRRVGMVFQKPN   97 (253)
T ss_pred             EECCEEccccccCHHHHhhcEEEEecCCC
Confidence            999998842 1234466889999999864

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.67  E-value=2.2e-16  Score=156.84  Aligned_cols=88  Identities=18%  Similarity=0.392  Sum_probs=75.9

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i  478 (510)
                      ...++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        17 ~~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I   81 (267)
T PRK14235         17 EIKMRARDVSVFYGEK---------------QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI   81 (267)
T ss_pred             CceEEEEeEEEEECCE---------------EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence            4579999999999642               599999999999999999999999999999999999975     89999


Q ss_pred             EEcCeecCCc-ccHHHhhccEEEEccCCC
Q 010435          479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~  506 (510)
                      +++|.++... .+....|+.+||+||+..
T Consensus        82 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  110 (267)
T PRK14235         82 TLDGEDIYDPRLDVVELRARVGMVFQKPN  110 (267)
T ss_pred             EECCEECcccccchHHHhhceEEEecCCC
Confidence            9999998421 234567889999999854

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=1.8e-16  Score=155.16  Aligned_cols=87  Identities=20%  Similarity=0.357  Sum_probs=74.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|+++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (242)
T PRK11124          2 SIQLNGINCFYGAH---------------QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             EEEEEeeEEEECCe---------------eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence            37899999999542               599999999999999999999999999999999999999999999999987


Q ss_pred             CC-----cccHHHhhccEEEEccCCCc
Q 010435          486 RS-----SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~-----~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..     ..+....|+.+||+||...+
T Consensus        67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~   93 (242)
T PRK11124         67 DFSKTPSDKAIRELRRNVGMVFQQYNL   93 (242)
T ss_pred             ccccccchhhHHHHHhheEEEecCccc
Confidence            21     11245668899999997643

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=1.7e-16  Score=155.76  Aligned_cols=86  Identities=19%  Similarity=0.353  Sum_probs=74.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEcC
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG  482 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~g  482 (510)
                      .++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+   |++|+|.++|
T Consensus         2 ~~~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g   66 (246)
T PRK14269          2 IAKTTNLNLFYGKK---------------QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG   66 (246)
T ss_pred             ceeeeeeEEEECCE---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC
Confidence            47899999999642               59999999999999999999999999999999999974   7999999999


Q ss_pred             eecCCcccHHHhhccEEEEccCCCc
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++.+ .+....|+.+||+||+..+
T Consensus        67 ~~i~~-~~~~~~~~~i~~~~q~~~l   90 (246)
T PRK14269         67 KDVKN-QDVVALRKNVGMVFQQPNV   90 (246)
T ss_pred             Eeccc-CCHHHHhhhEEEEecCCcc
Confidence            99853 3455678899999998643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.67  E-value=1.9e-16  Score=157.27  Aligned_cols=93  Identities=25%  Similarity=0.328  Sum_probs=75.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|+.+...      ++++.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~l~~~~l~~~~~~~~~~------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   77 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGW------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL   77 (267)
T ss_pred             eEEEeceEEEecCCCCc------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence            58999999999632100      011123699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .. ...+..++.+||+||..
T Consensus        78 ~~-~~~~~~~~~i~~v~q~~   96 (267)
T PRK15112         78 HF-GDYSYRSQRIRMIFQDP   96 (267)
T ss_pred             CC-CchhhHhccEEEEecCc
Confidence            42 23344567899999975

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.67  E-value=1.5e-16  Score=164.93  Aligned_cols=84  Identities=21%  Similarity=0.453  Sum_probs=73.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~i~~l~~~~~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i   67 (369)
T PRK11000          3 SVTLRNVTKAYGDV---------------VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM   67 (369)
T ss_pred             EEEEEEEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            48899999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ....++.+||+||...|
T Consensus        68 ~~---~~~~~~~i~~v~Q~~~l   86 (369)
T PRK11000         68 ND---VPPAERGVGMVFQSYAL   86 (369)
T ss_pred             CC---CCHhHCCEEEEeCCccc
Confidence            43   22345789999998654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.67  E-value=2e-16  Score=152.54  Aligned_cols=87  Identities=24%  Similarity=0.492  Sum_probs=74.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++.             +.+++|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.++.
T Consensus         3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   69 (220)
T cd03245           3 IEFRNVSFSYPNQE-------------IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR   69 (220)
T ss_pred             EEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence            78999999996421             25999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+..+.++.+|||||...+
T Consensus        70 ~-~~~~~~~~~i~~~~q~~~~   89 (220)
T cd03245          70 Q-LDPADLRRNIGYVPQDVTL   89 (220)
T ss_pred             H-CCHHHHHhhEEEeCCCCcc
Confidence            2 2334567889999998654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=2.6e-16  Score=158.18  Aligned_cols=91  Identities=19%  Similarity=0.400  Sum_probs=75.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|+++..          ....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~i~nl~~~~~~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   74 (289)
T PRK13645          5 KDIILDNVSYTYAKKTP----------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA   74 (289)
T ss_pred             ceEEEEEEEEEeCCCCc----------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            35899999999964310          01249999999999999999999999999999999999999999999999998


Q ss_pred             cCC----cccHHHhhccEEEEccCC
Q 010435          485 IRS----SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~----~~~~~~~r~~iG~cpQ~~  505 (510)
                      +..    ..+..+.|+.+||+||..
T Consensus        75 i~~~~~~~~~~~~~~~~i~~v~q~~   99 (289)
T PRK13645         75 IPANLKKIKEVKRLRKEIGLVFQFP   99 (289)
T ss_pred             ccccccccccHHHHhccEEEEEeCc
Confidence            731    113456788999999985

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=1.8e-16  Score=156.52  Aligned_cols=86  Identities=20%  Similarity=0.427  Sum_probs=74.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|+++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   66 (255)
T PRK11231          2 TLRTENLTVGYGTK---------------RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI   66 (255)
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh
Confidence            37899999999532               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. .+..+.++.+||+||...+
T Consensus        67 ~~-~~~~~~~~~i~~~~q~~~~   87 (255)
T PRK11231         67 SM-LSSRQLARRLALLPQHHLT   87 (255)
T ss_pred             HH-CCHHHHhhheEEecccCCC
Confidence            42 2344567789999997643

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=2.4e-16  Score=155.07  Aligned_cols=85  Identities=20%  Similarity=0.462  Sum_probs=74.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i  480 (510)
                      .+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|+|.+
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   67 (250)
T PRK14247          3 KIEIRDLKVSFGQV---------------EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL   67 (250)
T ss_pred             eEEEEeeEEEECCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence            48899999999542               599999999999999999999999999999999999974     7999999


Q ss_pred             cCeecCCcccHHHhhccEEEEccCCC
Q 010435          481 YGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       481 ~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +|.++.. .+..+.|+.+||+||...
T Consensus        68 ~g~~i~~-~~~~~~~~~i~~v~q~~~   92 (250)
T PRK14247         68 DGQDIFK-MDVIELRRRVQMVFQIPN   92 (250)
T ss_pred             CCEECCc-CCHHHHhccEEEEeccCc
Confidence            9999853 345567889999999864

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.67  E-value=3e-16  Score=155.07  Aligned_cols=90  Identities=16%  Similarity=0.281  Sum_probs=78.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++++++.|++..             ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.
T Consensus        17 ~~~i~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~   83 (257)
T cd03288          17 GGEIKIHDLCVRYENNL-------------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI   83 (257)
T ss_pred             CceEEEEEEEEEeCCCC-------------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence            45699999999996421             25999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.. .+..+.|+.+|||||.+.+
T Consensus        84 ~i~~-~~~~~~~~~i~~v~q~~~l  106 (257)
T cd03288          84 DISK-LPLHTLRSRLSIILQDPIL  106 (257)
T ss_pred             Ehhh-CCHHHHhhhEEEECCCCcc
Confidence            9853 3455678899999998654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.66  E-value=2e-16  Score=155.51  Aligned_cols=87  Identities=22%  Similarity=0.493  Sum_probs=74.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++++++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (250)
T PRK11264          3 AIEVKNLVKKFHGQ---------------TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI   67 (250)
T ss_pred             cEEEeceEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence            48899999999542               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcc-------cHHHhhccEEEEccCCCc
Q 010435          486 RSSV-------SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~-------~~~~~r~~iG~cpQ~~~L  507 (510)
                      ....       +....|+.+||+||...+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (250)
T PRK11264         68 DTARSLSQQKGLIRQLRQHVGFVFQNFNL   96 (250)
T ss_pred             cccccccchhhHHHHhhhhEEEEecCccc
Confidence            4211       134567899999997643

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.9e-16  Score=156.86  Aligned_cols=87  Identities=23%  Similarity=0.390  Sum_probs=76.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++++++.|++..            .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         4 ~l~~~~l~~~~~~~~------------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i   71 (277)
T PRK13642          4 ILEVENLVFKYEKES------------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL   71 (277)
T ss_pred             eEEEEEEEEEcCCCC------------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence            589999999996421            12599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .. ....+.++.+||+||..
T Consensus        72 ~~-~~~~~~~~~i~~v~q~~   90 (277)
T PRK13642         72 TA-ENVWNLRRKIGMVFQNP   90 (277)
T ss_pred             Cc-CCHHHHhcceEEEEECH
Confidence            53 34556788999999985

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.66  E-value=3.1e-16  Score=152.10  Aligned_cols=92  Identities=18%  Similarity=0.355  Sum_probs=74.8

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++++++.|++..           ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~   73 (228)
T PRK10584          5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP   73 (228)
T ss_pred             ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEE
Confidence            4689999999996421           01248999999999999999999999999999999999999999999999998


Q ss_pred             cCCccc--HHHh-hccEEEEccCCCc
Q 010435          485 IRSSVS--MTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~--~~~~-r~~iG~cpQ~~~L  507 (510)
                      +.....  ..+. ++.+||+||...+
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~~q~~~l   99 (228)
T PRK10584         74 LHQMDEEARAKLRAKHVGFVFQSFML   99 (228)
T ss_pred             cccCCHHHHHHHHhheEEEEEccccc
Confidence            853211  1123 3679999998643

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.66  E-value=2.2e-16  Score=155.57  Aligned_cols=86  Identities=23%  Similarity=0.415  Sum_probs=73.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (252)
T TIGR03005         1 VRFSDVTKRFGIL---------------TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY   65 (252)
T ss_pred             CEEEEEEEEeCCe---------------eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            4689999999542               5999999999999999999999999999999999999999999999999874


Q ss_pred             Cc------------ccHHHhhccEEEEccCCCc
Q 010435          487 SS------------VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~------------~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..            .+....|+.+||+||...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   98 (252)
T TIGR03005        66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL   98 (252)
T ss_pred             ccccccccccccchhHHHHHhhCeEEEecCccc
Confidence            21            1124568899999997643

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.66  E-value=1.8e-16  Score=154.71  Aligned_cols=88  Identities=25%  Similarity=0.486  Sum_probs=74.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|+++.            .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~i~~l~~~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   68 (238)
T cd03249           1 IEFKNVSFRYPSRP------------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR   68 (238)
T ss_pred             CeEEEEEEecCCCC------------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence            36899999996421            125999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+..+.++.+||+||.+.+
T Consensus        69 ~-~~~~~~~~~i~~~~q~~~~   88 (238)
T cd03249          69 D-LNLRWLRSQIGLVSQEPVL   88 (238)
T ss_pred             h-cCHHHHHhhEEEECCchhh
Confidence            2 2344567789999998643

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3e-16  Score=155.30  Aligned_cols=89  Identities=25%  Similarity=0.406  Sum_probs=76.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        11 ~~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i   75 (260)
T PRK10744         11 PSKIQVRNLNFYYGKF---------------HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI   75 (260)
T ss_pred             CceEEEEEEEEEeCCe---------------EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence            4569999999999542               59999999999999999999999999999999999986     589999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.. ..+....|+.+||+||...+
T Consensus        76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~  105 (260)
T PRK10744         76 LLDGENILTPKQDIALLRAKVGMVFQKPTP  105 (260)
T ss_pred             EECCEEccccccchHHHhcceEEEecCCcc
Confidence            999999842 12345678899999998643

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.1e-16  Score=163.86  Aligned_cols=86  Identities=30%  Similarity=0.539  Sum_probs=75.9

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...+++++++|.|++.               .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.
T Consensus        17 ~~~l~l~~v~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~   81 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV   81 (377)
T ss_pred             CceEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence            3469999999999542               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+   ....++.+|||||+..|
T Consensus        82 ~i~~---~~~~~r~ig~vfQ~~~l  102 (377)
T PRK11607         82 DLSH---VPPYQRPINMMFQSYAL  102 (377)
T ss_pred             ECCC---CCHHHCCEEEEeCCCcc
Confidence            9843   23457899999998754

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.8e-16  Score=158.84  Aligned_cols=89  Identities=21%  Similarity=0.361  Sum_probs=74.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++...          ....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         3 i~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~   72 (305)
T PRK13651          3 IKVKNIVKIFNKKLP----------TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEK   72 (305)
T ss_pred             EEEEEEEEEECCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecc
Confidence            789999999964310          1125999999999999999999999999999999999999999999999987752


Q ss_pred             Cc-----------------------ccHHHhhccEEEEccCC
Q 010435          487 SS-----------------------VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~~-----------------------~~~~~~r~~iG~cpQ~~  505 (510)
                      ..                       ....++|+.+|||||..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~  114 (305)
T PRK13651         73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA  114 (305)
T ss_pred             cccccccccccccccccccccccccchHHHHHhceEEEeeCc
Confidence            10                       13456788999999963

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.66  E-value=1.8e-16  Score=155.19  Aligned_cols=85  Identities=22%  Similarity=0.370  Sum_probs=70.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCee
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS  484 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~~  484 (510)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.  +|++|+|.++|.+
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~   65 (243)
T TIGR01978         1 LKIKDLHVSVEDK---------------EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD   65 (243)
T ss_pred             CeEeeEEEEECCE---------------EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEe
Confidence            4689999999532               5999999999999999999999999999999999995  7999999999998


Q ss_pred             cCCcccHHHhhccEEEEccCCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +.........+..+||+||.+.
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~   87 (243)
T TIGR01978        66 LLELEPDERARAGLFLAFQYPE   87 (243)
T ss_pred             cCCCCHHHhhccceEeeecccc
Confidence            8532111223456999999864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.66  E-value=7e-17  Score=164.34  Aligned_cols=89  Identities=26%  Similarity=0.432  Sum_probs=82.3

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..|+++|+++.|..+              +++++|+||++.+|+.++|+||+||||||+|++|-+++..++|.|.|||+
T Consensus       535 ~G~i~fsnvtF~Y~p~--------------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq  600 (790)
T KOG0056|consen  535 QGKIEFSNVTFAYDPG--------------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ  600 (790)
T ss_pred             CCeEEEEEeEEecCCC--------------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc
Confidence            4579999999999754              26999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ||+. ..+...|++||+|||+.+|
T Consensus       601 dIrn-vt~~SLRs~IGVVPQDtvL  623 (790)
T KOG0056|consen  601 DIRN-VTQSSLRSSIGVVPQDTVL  623 (790)
T ss_pred             hHHH-HHHHHHHHhcCcccCccee
Confidence            9974 5678999999999999877

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3.1e-16  Score=156.15  Aligned_cols=89  Identities=25%  Similarity=0.378  Sum_probs=76.3

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ...++++++++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++     |++|+|
T Consensus        22 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   86 (271)
T PRK14238         22 KVVFDTQNLNLWYGED---------------HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI   86 (271)
T ss_pred             ceEEEEeeeEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence            4479999999999642               58999999999999999999999999999999999987     699999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.. .......++.+||+||+..+
T Consensus        87 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  116 (271)
T PRK14238         87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNP  116 (271)
T ss_pred             EECCEEcccccccHHHHhhhEEEEecCCcc
Confidence            999998842 12345668899999998643

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.66  E-value=2.8e-16  Score=148.73  Aligned_cols=89  Identities=27%  Similarity=0.435  Sum_probs=75.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCe
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF  483 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~  483 (510)
                      .+++++++|.|++..         +...+.+++++||++++||+++|+|+|||||||++++|+|+.  +|++|+|.++|.
T Consensus         3 ~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~   73 (194)
T cd03213           3 TLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR   73 (194)
T ss_pred             EEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence            488999999996421         001136999999999999999999999999999999999999  999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++..    ...++.+|||||.+.+
T Consensus        74 ~~~~----~~~~~~i~~~~q~~~~   93 (194)
T cd03213          74 PLDK----RSFRKIIGYVPQDDIL   93 (194)
T ss_pred             eCch----HhhhheEEEccCcccC
Confidence            8842    2667899999998643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.66  E-value=3e-16  Score=151.77  Aligned_cols=86  Identities=29%  Similarity=0.527  Sum_probs=77.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+.++++++.|+++              ..+++++|+++++||+++|+|||||||||++++|+|+++|++|+|.++|.++
T Consensus         3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~   68 (235)
T COG1122           3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT   68 (235)
T ss_pred             eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeec
Confidence            57899999999754              2699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ....+..++|+++|+++|+.
T Consensus        69 ~~~~~~~~~~~~vG~VfQnp   88 (235)
T COG1122          69 SSEKSLLELRQKVGLVFQNP   88 (235)
T ss_pred             cchhhHHHhhcceEEEEECc
Confidence            53356788999999999975

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=3e-16  Score=156.56  Aligned_cols=85  Identities=34%  Similarity=0.568  Sum_probs=73.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|+++.|++.              +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   67 (275)
T PRK13639          2 LETRDLKYSYPDG--------------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK   67 (275)
T ss_pred             EEEEEEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence            6799999999632              15999999999999999999999999999999999999999999999999984


Q ss_pred             C-cccHHHhhccEEEEccCC
Q 010435          487 S-SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~-~~~~~~~r~~iG~cpQ~~  505 (510)
                      . ......+++.+||+||..
T Consensus        68 ~~~~~~~~~~~~i~~v~q~~   87 (275)
T PRK13639         68 YDKKSLLEVRKTVGIVFQNP   87 (275)
T ss_pred             cccchHHHHHhheEEEeeCh
Confidence            2 122345688999999974

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=3.7e-16  Score=159.39  Aligned_cols=96  Identities=22%  Similarity=0.329  Sum_probs=78.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|+.+.+.  .   ++++.+.||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         4 ~~l~v~nl~~~~~~~~~~--~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~   78 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGL--F---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD   78 (327)
T ss_pred             ceEEEeeeEEEEcCCCCc--c---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence            468999999999643110  0   01123479999999999999999999999999999999999999999999999999


Q ss_pred             cCCc--ccHHHhhccEEEEccCC
Q 010435          485 IRSS--VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~--~~~~~~r~~iG~cpQ~~  505 (510)
                      +.+.  .+.+..|+++||+||+.
T Consensus        79 l~~~~~~~~~~~r~~i~~v~Q~~  101 (327)
T PRK11308         79 LLKADPEAQKLLRQKIQIVFQNP  101 (327)
T ss_pred             cCcCCHHHHHHHhCCEEEEEcCc
Confidence            8532  23456788999999986

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3e-16  Score=155.20  Aligned_cols=89  Identities=26%  Similarity=0.387  Sum_probs=75.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i  478 (510)
                      +..++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+  |   ++|+|
T Consensus        10 ~~~l~i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i   74 (259)
T PRK14274         10 QEVYQINGMNLWYGQH---------------HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM   74 (259)
T ss_pred             CceEEEeeEEEEECCe---------------eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE
Confidence            4569999999999642               59999999999999999999999999999999999987  3   68999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++|.++.. ..+..+.|+.+||+||+..+
T Consensus        75 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  104 (259)
T PRK14274         75 NYNGSNILKGKVDLVELRKNIGMVFQKGNP  104 (259)
T ss_pred             EECCEEccccccCHHHHhhceEEEecCCcc
Confidence            999998842 12345668899999998643

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.2e-16  Score=163.75  Aligned_cols=88  Identities=28%  Similarity=0.498  Sum_probs=80.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..|+++|++..|++++              ++|+++||+|++||.+||+|+|||||||.+++|.+++. .+|+|+|||.
T Consensus       349 ~~~I~F~dV~f~y~~k~--------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~  413 (591)
T KOG0057|consen  349 GGSIEFDDVHFSYGPKR--------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQ  413 (591)
T ss_pred             CCcEEEEeeEEEeCCCC--------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCe
Confidence            44699999999997642              49999999999999999999999999999999999999 9999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |++. .+.+.+|+.|||+||+..|
T Consensus       414 dik~-~~~~SlR~~Ig~VPQd~~L  436 (591)
T KOG0057|consen  414 DIKE-VSLESLRQSIGVVPQDSVL  436 (591)
T ss_pred             eHhh-hChHHhhhheeEeCCcccc
Confidence            9974 5788999999999999876

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.66  E-value=2.2e-16  Score=150.10  Aligned_cols=86  Identities=28%  Similarity=0.386  Sum_probs=71.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcCee
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGFS  484 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g~~  484 (510)
                      ++++|++|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+  .+|++|++.++|.+
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~   65 (200)
T cd03217           1 LEIKDLHVSVGGK---------------EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED   65 (200)
T ss_pred             CeEEEEEEEeCCE---------------EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEE
Confidence            3688999999632               599999999999999999999999999999999999  58999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +......+..|+.+||+||...+
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~   88 (200)
T cd03217          66 ITDLPPEERARLGIFLAFQYPPE   88 (200)
T ss_pred             CCcCCHHHHhhCcEEEeecChhh
Confidence            85322222335679999997643

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.66  E-value=2.3e-16  Score=162.73  Aligned_cols=84  Identities=20%  Similarity=0.368  Sum_probs=74.5

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc--ceEEEcCe
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG--GDALIYGF  483 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~--G~i~i~g~  483 (510)
                      .+++++++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++  |+|.++|.
T Consensus         5 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~   69 (362)
T TIGR03258         5 GIRIDHLRVAYGAN---------------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR   69 (362)
T ss_pred             EEEEEEEEEEECCe---------------EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCE
Confidence            58999999999642               59999999999999999999999999999999999999999  99999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+   ....++.+||++|+..|
T Consensus        70 ~~~~---~~~~~r~ig~vfQ~~~l   90 (362)
T TIGR03258        70 DLTH---APPHKRGLALLFQNYAL   90 (362)
T ss_pred             ECCC---CCHHHCCEEEEECCccc
Confidence            9842   22346789999998754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3.4e-16  Score=154.32  Aligned_cols=88  Identities=22%  Similarity=0.400  Sum_probs=75.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~  479 (510)
                      ..++++++++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|     ++|+|+
T Consensus         6 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   70 (254)
T PRK14273          6 AIIETENLNLFYTDF---------------KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI   70 (254)
T ss_pred             ceEEEeeeEEEeCCc---------------eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence            469999999999542               589999999999999999999999999999999999997     589999


Q ss_pred             EcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          480 IYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++|.++.. ..+..+.|+.+||+||+..+
T Consensus        71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~   99 (254)
T PRK14273         71 YEGKNIYSNNFDILELRRKIGMVFQTPNP   99 (254)
T ss_pred             ECCEecccccccHHHHhhceEEEeecccc
Confidence            99998742 12345678899999998643

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.66  E-value=1.7e-16  Score=154.78  Aligned_cols=99  Identities=29%  Similarity=0.408  Sum_probs=73.6

Q ss_pred             EEEeeeEEEcCCCCCcccc------cccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          407 VQIRGLVKTFPGTRKIGCC------CKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~------~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      ++++|++|.|....+.+..      +..++...+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~   80 (236)
T cd03267           1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV   80 (236)
T ss_pred             CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            3567777777653211000      0011223446999999999999999999999999999999999999999999999


Q ss_pred             cCeecCCcccHHHhhccEEEEc-cCCCc
Q 010435          481 YGFSIRSSVSMTNIQKSIGVCP-QVTLF  507 (510)
Q Consensus       481 ~g~~i~~~~~~~~~r~~iG~cp-Q~~~L  507 (510)
                      +|.++..  .....++.+||+| |.+.+
T Consensus        81 ~g~~~~~--~~~~~~~~i~~~~~~~~~~  106 (236)
T cd03267          81 AGLVPWK--RRKKFLRRIGVVFGQKTQL  106 (236)
T ss_pred             CCEEccc--cchhhcccEEEEcCCcccc
Confidence            9988632  2345678899998 54433

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.9e-16  Score=154.98  Aligned_cols=80  Identities=26%  Similarity=0.449  Sum_probs=70.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   66 (255)
T PRK11248          2 LQISHLYADYGGK---------------PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE   66 (255)
T ss_pred             EEEEEEEEEeCCe---------------eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            6889999999542               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .      .++.+||+||...+
T Consensus        67 ~------~~~~~~~v~q~~~~   81 (255)
T PRK11248         67 G------PGAERGVVFQNEGL   81 (255)
T ss_pred             C------CCCcEEEEeCCCcc
Confidence            2      13468999998643

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.66  E-value=3.9e-17  Score=156.05  Aligned_cols=95  Identities=28%  Similarity=0.405  Sum_probs=70.9

Q ss_pred             eEEEeeeEEEcCCCCC-cccccc-----cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE
Q 010435          406 AVQIRGLVKTFPGTRK-IGCCCK-----CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~-~~~~~~-----~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~  479 (510)
                      .+.++||+|.|.-..+ +|..+.     .+|++...||+|+||+|++||++|++|+||||||||+|||||++.|++|.|.
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~   82 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR   82 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence            4677788887753211 110000     1233455799999999999999999999999999999999999999999999


Q ss_pred             EcCeecCCcccHHHhhccEEEEc
Q 010435          480 IYGFSIRSSVSMTNIQKSIGVCP  502 (510)
Q Consensus       480 i~g~~i~~~~~~~~~r~~iG~cp  502 (510)
                      ++|++-.+  +.++.-+++|++.
T Consensus        83 V~G~~Pf~--~~~~~~~~~~~v~  103 (325)
T COG4586          83 VNGKDPFR--RREEYLRSIGLVM  103 (325)
T ss_pred             ecCcCcch--hHHHHHHHHHHHh
Confidence            99998642  3445556666664

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.2e-16  Score=154.90  Aligned_cols=88  Identities=26%  Similarity=0.464  Sum_probs=75.3

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ...++++|++|.|+++               .+++|+||++++||++||+|+||||||||+++|+|+++     |++|+|
T Consensus        18 ~~~l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   82 (267)
T PRK14237         18 EIALSTKDLHVYYGKK---------------EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI   82 (267)
T ss_pred             CeEEEEeeEEEEECCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence            4479999999999532               59999999999999999999999999999999999986     589999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCC
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .++|.++.. ..+....|+.+||+||...
T Consensus        83 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~  111 (267)
T PRK14237         83 LYRGIDINRKEINVYEMRKHIGMVFQRPN  111 (267)
T ss_pred             EECCEEcccccCChHHHhcceEEEecCCc
Confidence            999999842 1234566889999999754

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.66  E-value=1.3e-16  Score=149.01  Aligned_cols=79  Identities=29%  Similarity=0.550  Sum_probs=69.9

Q ss_pred             EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (510)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~  488 (510)
                      +++++|.|+++               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.. 
T Consensus         2 ~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~-   65 (180)
T cd03214           2 VENLSVGYGGR---------------TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-   65 (180)
T ss_pred             eeEEEEEECCe---------------eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-
Confidence            67899999542               59999999999999999999999999999999999999999999999999853 


Q ss_pred             ccHHHhhccEEEEcc
Q 010435          489 VSMTNIQKSIGVCPQ  503 (510)
Q Consensus       489 ~~~~~~r~~iG~cpQ  503 (510)
                      .+..+.++.+||+||
T Consensus        66 ~~~~~~~~~i~~~~q   80 (180)
T cd03214          66 LSPKELARKIAYVPQ   80 (180)
T ss_pred             CCHHHHHHHHhHHHH
Confidence            334566778999998

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.66  E-value=3e-16  Score=152.97  Aligned_cols=86  Identities=28%  Similarity=0.527  Sum_probs=74.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++.+              .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~~--------------~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~   66 (236)
T cd03253           1 IEFENVTFAYDPGR--------------PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR   66 (236)
T ss_pred             CEEEEEEEEeCCCC--------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence            36789999995321              4899999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+..+.|+.+||+||...+
T Consensus        67 ~-~~~~~~~~~i~~~~q~~~~   86 (236)
T cd03253          67 E-VTLDSLRRAIGVVPQDTVL   86 (236)
T ss_pred             h-CCHHHHHhhEEEECCCChh
Confidence            3 3455678889999998643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.65  E-value=3.1e-16  Score=151.25  Aligned_cols=90  Identities=21%  Similarity=0.387  Sum_probs=75.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++..           +++.+++++||++++||+++|+|+|||||||++++|+|+++|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   70 (220)
T TIGR02982         2 ISIRNLNHYYGHGS-----------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY   70 (220)
T ss_pred             EEEEEEEEEccCCC-----------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence            67899999996421           1236999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc--cHHHhhccEEEEccCCCc
Q 010435          487 SSV--SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...  +....++.+||+||+..+
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~   93 (220)
T TIGR02982        71 GASEKELVQLRRNIGYIFQAHNL   93 (220)
T ss_pred             hcCHhHHHHHHhheEEEcCChhh
Confidence            211  123567899999998643

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.65  E-value=2.9e-16  Score=170.92  Aligned_cols=87  Identities=25%  Similarity=0.509  Sum_probs=79.5

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++++              .+++|+||++++||.++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus       333 ~~I~~~~vsf~Y~~~~--------------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~  398 (529)
T TIGR02868       333 PTLELRDLSFGYPGSP--------------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS  398 (529)
T ss_pred             ceEEEEEEEEecCCCC--------------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            3599999999996431              48999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ . .+++|+++|||||++.|
T Consensus       399 i~~-~-~~~lr~~i~~V~Q~~~l  419 (529)
T TIGR02868       399 VSS-L-QDELRRRISVFAQDAHL  419 (529)
T ss_pred             hhh-H-HHHHHhheEEEccCccc
Confidence            974 4 78899999999999865

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.65  E-value=5.6e-16  Score=158.25  Aligned_cols=100  Identities=17%  Similarity=0.248  Sum_probs=78.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++||+|.|+.+.... . +.+.++.+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~   83 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQ-W-FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK   83 (331)
T ss_pred             CceEEEeCeEEEECCCCccc-c-ccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCE
Confidence            45799999999996421100 0 000112347999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcc--cHHHhhccEEEEccCC
Q 010435          484 SIRSSV--SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~--~~~~~r~~iG~cpQ~~  505 (510)
                      ++....  +....|+++||+||..
T Consensus        84 ~i~~~~~~~~~~~r~~i~~v~Q~~  107 (331)
T PRK15079         84 DLLGMKDDEWRAVRSDIQMIFQDP  107 (331)
T ss_pred             ECCcCCHHHHHHHhCceEEEecCc
Confidence            985321  2345688999999985

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=4.7e-16  Score=155.71  Aligned_cols=87  Identities=20%  Similarity=0.382  Sum_probs=75.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---ceEEEc
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIY  481 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---G~i~i~  481 (510)
                      ..+++++++|.|++..             ..+++++||++++||++||+|+||||||||+++|+|+++|++   |+|+++
T Consensus         4 ~~l~i~~l~~~~~~~~-------------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~   70 (282)
T PRK13640          4 NIVEFKHVSFTYPDSK-------------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVD   70 (282)
T ss_pred             ceEEEEEEEEEcCCCC-------------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEEC
Confidence            3689999999996421             159999999999999999999999999999999999999998   899999


Q ss_pred             CeecCCcccHHHhhccEEEEccCC
Q 010435          482 GFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       482 g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      |.++.. ....+.++.+|||||..
T Consensus        71 g~~~~~-~~~~~~~~~ig~v~q~~   93 (282)
T PRK13640         71 GITLTA-KTVWDIREKVGIVFQNP   93 (282)
T ss_pred             CEECCc-CCHHHHHhheEEEEECH
Confidence            999853 33456678999999975

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=4.1e-16  Score=154.17  Aligned_cols=87  Identities=23%  Similarity=0.424  Sum_probs=74.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i  480 (510)
                      .++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         4 ~l~i~~v~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~   68 (258)
T PRK14241          4 RIDVKDLNIYYGSF---------------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL   68 (258)
T ss_pred             cEEEeeEEEEECCE---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence            58899999999642               599999999999999999999999999999999999974     7999999


Q ss_pred             cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++.. ..+....|+.+||+||+..+
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~   96 (258)
T PRK14241         69 DGEDLYGPGVDPVAVRRTIGMVFQRPNP   96 (258)
T ss_pred             CCEeccccccChHHHhcceEEEcccccc
Confidence            9998742 12234678899999997543

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.65  E-value=4e-16  Score=154.87  Aligned_cols=94  Identities=16%  Similarity=0.245  Sum_probs=74.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++|+|.|++....      ++++.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~~~~------~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   75 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLF------GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL   75 (265)
T ss_pred             eEEEEeEEEEeccCccc------cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence            47899999999632100      000123699999999999999999999999999999999999999999999999988


Q ss_pred             CCcc--cHHHhhccEEEEccCC
Q 010435          486 RSSV--SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~--~~~~~r~~iG~cpQ~~  505 (510)
                      ....  +....|+.+||+||..
T Consensus        76 ~~~~~~~~~~~~~~i~~v~q~~   97 (265)
T TIGR02769        76 YQLDRKQRRAFRRDVQLVFQDS   97 (265)
T ss_pred             cccCHHHHHHHhhceEEEecCh
Confidence            5311  1234678899999975

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=4.7e-16  Score=162.01  Aligned_cols=102  Identities=25%  Similarity=0.368  Sum_probs=77.1

Q ss_pred             eEEEeeeEEEcCCCCCcc------cccc---cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          406 AVQIRGLVKTFPGTRKIG------CCCK---CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~------~~~~---~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      .|+++||+|.|++.....      ...+   .++.+...+++++||++++||+++|+|+||||||||+++|+|+++|++|
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            589999999997642100      0000   0122334589999999999999999999999999999999999999999


Q ss_pred             eEEEcCeecCCcc--cHHHh-hccEEEEccCCCc
Q 010435          477 DALIYGFSIRSSV--SMTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       477 ~i~i~g~~i~~~~--~~~~~-r~~iG~cpQ~~~L  507 (510)
                      +|+++|.++....  +..+. ++++||+||+..+
T Consensus        84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l  117 (400)
T PRK10070         84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL  117 (400)
T ss_pred             EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence            9999999985311  11222 4689999998644

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=3.8e-16  Score=153.51  Aligned_cols=87  Identities=23%  Similarity=0.408  Sum_probs=74.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i  480 (510)
                      .++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|     ++|++++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~   67 (249)
T PRK14253          3 KFNIENLDLFYGEN---------------QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTM   67 (249)
T ss_pred             eEEEeccEEEECCe---------------eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence            47899999999642               599999999999999999999999999999999999986     5999999


Q ss_pred             cCeecCCcccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++....+....|+.+||+||.+.+
T Consensus        68 ~g~~~~~~~~~~~~~~~i~~~~q~~~~   94 (249)
T PRK14253         68 DGEDIYGNIDVADLRIKVGMVFQKPNP   94 (249)
T ss_pred             CCEEcccccchHHHHhheeEEecCCCc
Confidence            999874222345678899999998653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.65  E-value=5e-16  Score=153.55  Aligned_cols=86  Identities=16%  Similarity=0.281  Sum_probs=72.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++++++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   69 (258)
T PRK11701          5 PLLSVRGLTKLYGPR---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD   69 (258)
T ss_pred             ceEEEeeeEEEcCCc---------------eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence            358999999999642               59999999999999999999999999999999999999999999999988


Q ss_pred             -----cCCccc--HHH-hhccEEEEccCC
Q 010435          485 -----IRSSVS--MTN-IQKSIGVCPQVT  505 (510)
Q Consensus       485 -----i~~~~~--~~~-~r~~iG~cpQ~~  505 (510)
                           +.....  ..+ .++.+||+||..
T Consensus        70 ~~~~~i~~~~~~~~~~~~~~~i~~v~q~~   98 (258)
T PRK11701         70 GQLRDLYALSEAERRRLLRTEWGFVHQHP   98 (258)
T ss_pred             ccccccccCCHHHHHHHhhcceEEEeeCc
Confidence                 642111  112 356799999985

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.5e-16  Score=152.70  Aligned_cols=87  Identities=22%  Similarity=0.398  Sum_probs=74.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i~  479 (510)
                      ..++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++  |   ++|+|.
T Consensus         3 ~~l~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~   67 (252)
T PRK14256          3 NKVKLEQLNVHFGKN---------------HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL   67 (252)
T ss_pred             cEEEEEEEEEEeCCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE
Confidence            358999999999632               59999999999999999999999999999999999986  4   689999


Q ss_pred             EcCeecCCc-ccHHHhhccEEEEccCCC
Q 010435          480 IYGFSIRSS-VSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~  506 (510)
                      ++|.++... .+....|+.+||+||+..
T Consensus        68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~   95 (252)
T PRK14256         68 LDDTDIYDRGVDPVSIRRRVGMVFQKPN   95 (252)
T ss_pred             ECCEEcccccCChHHhhccEEEEecCCC
Confidence            999998421 123466889999999854

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.3e-16  Score=152.70  Aligned_cols=88  Identities=23%  Similarity=0.449  Sum_probs=75.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~  479 (510)
                      +.++++|+++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.
T Consensus         3 ~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~   67 (251)
T PRK14270          3 IKMESKNLNLWYGEK---------------QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL   67 (251)
T ss_pred             cEEEEEEeEEEECCe---------------eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence            468999999999532               599999999999999999999999999999999999875     799999


Q ss_pred             EcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          480 IYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++|.++... .+....++.+||+||+..+
T Consensus        68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (251)
T PRK14270         68 LDGKNIYDKDVDVVELRKRVGMVFQKPNP   96 (251)
T ss_pred             ECCEecccccccHHHHHhheEEEecCCCc
Confidence            999998421 1234568889999998654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.2e-16  Score=152.68  Aligned_cols=87  Identities=23%  Similarity=0.439  Sum_probs=73.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i  480 (510)
                      .++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   67 (250)
T PRK14240          3 KISVKDLDLFYGDF---------------QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL   67 (250)
T ss_pred             eEEEEEEEEEECCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence            47899999999642               599999999999999999999999999999999998763     6999999


Q ss_pred             cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++.. ..+....|+.+||+||...+
T Consensus        68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14240         68 DGQDIYKSDIDVNQLRKRVGMVFQQPNP   95 (250)
T ss_pred             CCEEccccccchHHHhccEEEEecCCcc
Confidence            9999842 12344668899999998643

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.65  E-value=4.6e-16  Score=174.38  Aligned_cols=89  Identities=17%  Similarity=0.359  Sum_probs=80.8

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++..             +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus       450 ~~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~  516 (686)
T TIGR03797       450 GAIEVDRVTFRYRPDG-------------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD  516 (686)
T ss_pred             ceEEEEEEEEEcCCCC-------------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence            4699999999996431             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++. .+.+++|+++|||||++.|
T Consensus       517 i~~-~~~~~lr~~i~~v~Q~~~l  538 (686)
T TIGR03797       517 LAG-LDVQAVRRQLGVVLQNGRL  538 (686)
T ss_pred             cCc-CCHHHHHhccEEEccCCcc
Confidence            974 5788999999999999865

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.6e-16  Score=153.21  Aligned_cols=89  Identities=26%  Similarity=0.443  Sum_probs=75.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i  478 (510)
                      .+.++++++++.|+++               .+++|+||++++||++||+|+||||||||+++|+|+.+|     ++|+|
T Consensus        10 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   74 (258)
T PRK14268         10 QPQIKVENLNLWYGEK---------------QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV   74 (258)
T ss_pred             ceeEEEeeeEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE
Confidence            3469999999999532               599999999999999999999999999999999999985     89999


Q ss_pred             EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++... .+....|+.+||+||...+
T Consensus        75 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  104 (258)
T PRK14268         75 SIEGEDIYEPDVDVVELRKNVGMVFQKPNP  104 (258)
T ss_pred             EECCEEcccccchHHHHhhhEEEEecCCcc
Confidence            9999987421 1234567889999998643

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.8e-16  Score=152.39  Aligned_cols=87  Identities=21%  Similarity=0.443  Sum_probs=74.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~i  480 (510)
                      .++++++++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++     |++|+|.+
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i   68 (251)
T PRK14251          4 IISAKDVHLSYGNY---------------EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF   68 (251)
T ss_pred             eEEEEeeEEEECCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence            58999999999532               59999999999999999999999999999999999987     48999999


Q ss_pred             cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++.. ..+....|+.+||++|++.+
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~   96 (251)
T PRK14251         69 EGQNIYGSKMDLVELRKEVGMVFQQPTP   96 (251)
T ss_pred             CCEEcccccchHHHhhccEEEEecCCcc
Confidence            9998742 12345668899999998643

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.2e-16  Score=152.65  Aligned_cols=87  Identities=23%  Similarity=0.404  Sum_probs=74.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i  480 (510)
                      .+++++++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i   67 (250)
T PRK14262          3 IIEIENFSAYYGEK---------------KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYF   67 (250)
T ss_pred             eEEEEeeEEEeCCc---------------eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence            58899999999532               599999999999999999999999999999999999874     8999999


Q ss_pred             cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++... .+..+.++.+||+||++.+
T Consensus        68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14262         68 KGQDIYDPQLDVTEYRKKVGMVFQKPTP   95 (250)
T ss_pred             CCEEcccchhhHHHhhhhEEEEecCCcc
Confidence            99987421 1234567899999998754

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=6.5e-16  Score=154.19  Aligned_cols=89  Identities=24%  Similarity=0.329  Sum_probs=76.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i  478 (510)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        19 ~~~l~i~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i   83 (276)
T PRK14271         19 APAMAAVNLTLGFAGK---------------TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV   83 (276)
T ss_pred             CcEEEEeeEEEEECCE---------------EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE
Confidence            3468999999999642               599999999999999999999999999999999999986     69999


Q ss_pred             EEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++....+...+++.+||+||...+
T Consensus        84 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~l  112 (276)
T PRK14271         84 LLGGRSIFNYRDVLEFRRRVGMLFQRPNP  112 (276)
T ss_pred             EECCEEccccchhHHHhhheEEeccCCcc
Confidence            99999884322334668899999997643

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.64  E-value=5.6e-16  Score=154.38  Aligned_cols=83  Identities=20%  Similarity=0.348  Sum_probs=71.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|+++              +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         6 ~l~~~~l~~~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   71 (272)
T PRK15056          6 GIVVNDVTVTWRNG--------------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT   71 (272)
T ss_pred             eEEEEeEEEEecCC--------------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence            58999999999532              1599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhccEEEEccCCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ..    ...++.+||+||+..
T Consensus        72 ~~----~~~~~~i~~v~q~~~   88 (272)
T PRK15056         72 RQ----ALQKNLVAYVPQSEE   88 (272)
T ss_pred             HH----hhccceEEEeccccc
Confidence            31    122346999999854

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.64  E-value=5.3e-16  Score=154.40  Aligned_cols=87  Identities=28%  Similarity=0.437  Sum_probs=76.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|+++.|++..             ..+++|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++
T Consensus         2 ~i~~~nls~~~~~~~-------------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i   67 (275)
T cd03289           2 QMTVKDLTAKYTEGG-------------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSW   67 (275)
T ss_pred             eEEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEh
Confidence            378999999996421             158999999999999999999999999999999999998 789999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. .+..++|+.+|||||+..|
T Consensus        68 ~~-~~~~~lr~~i~~v~q~~~l   88 (275)
T cd03289          68 NS-VPLQKWRKAFGVIPQKVFI   88 (275)
T ss_pred             hh-CCHHHHhhhEEEECCCccc
Confidence            53 3566789999999998754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.64  E-value=5.5e-16  Score=154.27  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=73.4

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC--------cceE
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--------GGDA  478 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt--------~G~i  478 (510)
                      ++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|+        +|+|
T Consensus         2 l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i   66 (272)
T PRK13547          2 LTADHLHVARRHR---------------AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV   66 (272)
T ss_pred             eEEEEEEEEECCE---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE
Confidence            6889999999542               5999999999999999999999999999999999999998        9999


Q ss_pred             EEcCeecCCcccHHHhhccEEEEccCCC
Q 010435          479 LIYGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       479 ~i~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .++|.++.. .+..+.++.+||+||...
T Consensus        67 ~~~g~~~~~-~~~~~~~~~~~~v~q~~~   93 (272)
T PRK13547         67 TLNGEPLAA-IDAPRLARLRAVLPQAAQ   93 (272)
T ss_pred             EECCEEccc-CCHHHHHhhcEEecccCC
Confidence            999998742 234556778999999763

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.64  E-value=4.4e-16  Score=152.02  Aligned_cols=82  Identities=23%  Similarity=0.424  Sum_probs=71.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|+++               .+++++||++++||++||+|+|||||||++++|+|+++|++|++.++|.++.
T Consensus         1 i~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~   65 (237)
T TIGR00968         1 IEIANISKRFGSF---------------QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT   65 (237)
T ss_pred             CEEEEEEEEECCe---------------eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            3688999999642               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhccEEEEccCCC
Q 010435          487 SSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .   ....++.+|||||...
T Consensus        66 ~---~~~~~~~i~~~~q~~~   82 (237)
T TIGR00968        66 R---VHARDRKIGFVFQHYA   82 (237)
T ss_pred             c---CChhhcCEEEEecChh
Confidence            2   2234778999999763

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=7.6e-16  Score=151.65  Aligned_cols=89  Identities=19%  Similarity=0.347  Sum_probs=74.9

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i  478 (510)
                      +..+++++++|.|+++               .+++++||++.+||+++|+|+||||||||+++|+|+.+  |   ++|+|
T Consensus         3 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   67 (252)
T PRK14255          3 KKIITSSDVHLFYGKF---------------EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV   67 (252)
T ss_pred             cceEEEEeEEEEECCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE
Confidence            3468999999999632               59999999999999999999999999999999999875  4   58999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.. ..+....++.+||+||+..+
T Consensus        68 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (252)
T PRK14255         68 SLRGQNIYAPNEDVVQLRKQVGMVFQQPNP   97 (252)
T ss_pred             EEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence            999998842 12345667899999998643

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.64  E-value=5.8e-16  Score=152.05  Aligned_cols=85  Identities=24%  Similarity=0.380  Sum_probs=71.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCee
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS  484 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~~  484 (510)
                      ++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.  +|++|+|.++|.+
T Consensus         2 i~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~   66 (248)
T PRK09580          2 LSIKDLHVSVEDK---------------AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD   66 (248)
T ss_pred             eEEEEEEEEeCCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCc
Confidence            6899999999642               5999999999999999999999999999999999995  6999999999998


Q ss_pred             cCCcccHHHhhccEEEEccCCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +.........|+.+||++|+..
T Consensus        67 ~~~~~~~~~~~~~i~~~~q~~~   88 (248)
T PRK09580         67 LLELSPEDRAGEGIFMAFQYPV   88 (248)
T ss_pred             cccCCHHHHhhcceEEEecCch
Confidence            7532112233467999999863

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.64  E-value=9.8e-16  Score=152.65  Aligned_cols=89  Identities=21%  Similarity=0.432  Sum_probs=75.9

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ...++++|+++.|+++               .+++++||++++||+++|+|+|||||||++++|+|+.+     |++|+|
T Consensus        23 ~~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i   87 (272)
T PRK14236         23 QTALEVRNLNLFYGDK---------------QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI   87 (272)
T ss_pred             CcEEEEEEEEEEECCe---------------eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE
Confidence            4579999999999542               58999999999999999999999999999999999987     489999


Q ss_pred             EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++... .+....|+.+||+||+..+
T Consensus        88 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l  117 (272)
T PRK14236         88 RLDGQNIYDKKVDVAELRRRVGMVFQRPNP  117 (272)
T ss_pred             EECCEECcccccCHHHHhccEEEEecCCcc
Confidence            9999998421 2344668899999998643

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.64  E-value=3e-16  Score=144.96  Aligned_cols=86  Identities=23%  Similarity=0.488  Sum_probs=75.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      |+.+|++..-.++               ..++++||++++||+.+|+||||||||||+|.|+|...|++|++.++|.+..
T Consensus         2 i~a~nls~~~~Gr---------------~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~   66 (259)
T COG4559           2 IRAENLSYSLAGR---------------RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLN   66 (259)
T ss_pred             eeeeeeEEEeecc---------------eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChh
Confidence            6788888777553               5899999999999999999999999999999999999999999999999986


Q ss_pred             CcccHHHhhccEEEEccCCCcc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLFS  508 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L~  508 (510)
                      + +...+.-++-++.||...|.
T Consensus        67 ~-~~~~~lA~~raVlpQ~s~la   87 (259)
T COG4559          67 S-WPPEELARHRAVLPQNSSLA   87 (259)
T ss_pred             h-CCHHHHHHHhhhcccCcccc
Confidence            3 55666667789999987653

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.64  E-value=5.4e-16  Score=170.22  Aligned_cols=89  Identities=27%  Similarity=0.409  Sum_probs=80.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.             ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       337 ~~i~~~~v~f~y~~~~-------------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~  403 (574)
T PRK11160        337 VSLTLNNVSFTYPDQP-------------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP  403 (574)
T ss_pred             CeEEEEEEEEECCCCC-------------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            4699999999996531             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+.+|||||++.|
T Consensus       404 i~~-~~~~~~r~~i~~v~Q~~~l  425 (574)
T PRK11160        404 IAD-YSEAALRQAISVVSQRVHL  425 (574)
T ss_pred             hhh-CCHHHHHhheeEEcccchh
Confidence            974 5678899999999998755

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3.7e-16  Score=167.26  Aligned_cols=91  Identities=23%  Similarity=0.416  Sum_probs=84.2

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..|+.+|+++.|+.+            |++.+++|+||+|++||++||+||||+||||..++|-.++.|++|+|.+||.
T Consensus       463 ~G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~  530 (716)
T KOG0058|consen  463 QGVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV  530 (716)
T ss_pred             cceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence            4579999999999875            3567999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ||++ -+...+|++||+|-|+++|
T Consensus       531 ~i~~-~~~~~lr~~Ig~V~QEPvL  553 (716)
T KOG0058|consen  531 PISD-INHKYLRRKIGLVGQEPVL  553 (716)
T ss_pred             ehhh-cCHHHHHHHeeeeecccee
Confidence            9974 6778899999999999987

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.63  E-value=4.8e-16  Score=151.22  Aligned_cols=83  Identities=27%  Similarity=0.512  Sum_probs=72.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~   65 (232)
T cd03300           1 IELENVSKFYGGF---------------VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT   65 (232)
T ss_pred             CEEEeEEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            3688999999542               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .   ....++.+|||||+..+
T Consensus        66 ~---~~~~~~~i~~~~q~~~~   83 (232)
T cd03300          66 N---LPPHKRPVNTVFQNYAL   83 (232)
T ss_pred             c---CChhhcceEEEeccccc
Confidence            3   12346789999998654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.63  E-value=8.2e-16  Score=152.36  Aligned_cols=88  Identities=24%  Similarity=0.422  Sum_probs=74.7

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEc
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIY  481 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~  481 (510)
                      ..++++||++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++|+   +|+|.++
T Consensus         3 ~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~   67 (262)
T PRK09984          3 TIIRVEKLAKTFNQH---------------QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELL   67 (262)
T ss_pred             cEEEEeeEEEEeCCe---------------EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEEC
Confidence            368999999999642               5999999999999999999999999999999999999986   4999999


Q ss_pred             CeecCCc----ccHHHhhccEEEEccCCCc
Q 010435          482 GFSIRSS----VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       482 g~~i~~~----~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |.++...    .+..+.++.+||+||...+
T Consensus        68 g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (262)
T PRK09984         68 GRTVQREGRLARDIRKSRANTGYIFQQFNL   97 (262)
T ss_pred             CEecccccccchhHHHHHhheEEEcccccc
Confidence            9987421    1235567889999998643

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.63  E-value=5.8e-16  Score=159.47  Aligned_cols=72  Identities=29%  Similarity=0.443  Sum_probs=64.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHh----hccEEEEccCCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI----QKSIGVCPQVTLF  507 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~----r~~iG~cpQ~~~L  507 (510)
                      .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .+..+.    |+.+|||||...|
T Consensus         7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~~~~~rr~~i~~v~Q~~~l   82 (363)
T TIGR01186         7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVELREVRRKKIGMVFQQFAL   82 (363)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHHhCcEEEEECCCcC
Confidence            69999999999999999999999999999999999999999999999999853 233344    6799999998765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.63  E-value=7.5e-16  Score=151.81  Aligned_cols=85  Identities=22%  Similarity=0.381  Sum_probs=72.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee-
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS-  484 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~-  484 (510)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+ 
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (253)
T TIGR02323         3 LLQVSGLSKSYGGG---------------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG   67 (253)
T ss_pred             eEEEeeeEEEeCCc---------------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccc
Confidence            58999999999542               58999999999999999999999999999999999999999999999976 


Q ss_pred             ----cCCcccHH----HhhccEEEEccCCC
Q 010435          485 ----IRSSVSMT----NIQKSIGVCPQVTL  506 (510)
Q Consensus       485 ----i~~~~~~~----~~r~~iG~cpQ~~~  506 (510)
                          +.. ....    ..++.+||+||.+.
T Consensus        68 ~~~~~~~-~~~~~~~~~~~~~i~~~~q~~~   96 (253)
T TIGR02323        68 AELELYQ-LSEAERRRLMRTEWGFVHQNPR   96 (253)
T ss_pred             ccccccc-CCHHHHHHhhhcceEEEEeCcc
Confidence                532 1111    23467999999863

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.63  E-value=4.8e-16  Score=174.95  Aligned_cols=89  Identities=18%  Similarity=0.294  Sum_probs=80.5

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++..             +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus       476 ~~I~~~~vsf~y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~  542 (710)
T TIGR03796       476 GYVELRNITFGYSPLE-------------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP  542 (710)
T ss_pred             CeEEEEEEEEecCCCC-------------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence            4699999999997531             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|||||++.|
T Consensus       543 i~~-~~~~~lr~~i~~v~Q~~~l  564 (710)
T TIGR03796       543 REE-IPREVLANSVAMVDQDIFL  564 (710)
T ss_pred             HHH-CCHHHHHhheeEEecCChh
Confidence            963 5678899999999998754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.63  E-value=5.3e-16  Score=148.61  Aligned_cols=81  Identities=17%  Similarity=0.374  Sum_probs=68.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++.               .  .++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   63 (211)
T cd03298           1 VRLDKIRFSYGEQ---------------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT   63 (211)
T ss_pred             CEEEeEEEEeCCE---------------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence            4688999999531               2  3999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ...++.+||+||...+
T Consensus        64 ~~---~~~~~~i~~~~q~~~~   81 (211)
T cd03298          64 AA---PPADRPVSMLFQENNL   81 (211)
T ss_pred             cC---CHhHccEEEEeccccc
Confidence            31   2346789999997643

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=9.8e-16  Score=150.81  Aligned_cols=87  Identities=23%  Similarity=0.438  Sum_probs=75.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i  480 (510)
                      .+++++++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|+     +|+|++
T Consensus         4 ~l~~~~l~~~~~~~---------------~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~   68 (251)
T PRK14249          4 KIKIRGVNFFYHKH---------------QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL   68 (251)
T ss_pred             eEEEEEEEEEECCe---------------eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence            58899999999532               5999999999999999999999999999999999999997     699999


Q ss_pred             cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++... .+....|+.+||+||...+
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (251)
T PRK14249         69 DNENIYSPNLDVVNLRKRVGMVFQQPNP   96 (251)
T ss_pred             CCEEccccccChHHhhceEEEEecCCcc
Confidence            99987421 2345668899999998643

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=8.1e-16  Score=151.45  Aligned_cols=87  Identities=21%  Similarity=0.371  Sum_probs=74.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i  480 (510)
                      .++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++|+     +|+|.+
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   68 (252)
T PRK14272          4 LLSAQDVNIYYGDK---------------QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL   68 (252)
T ss_pred             EEEEeeeEEEECCE---------------EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEE
Confidence            58899999999532               5999999999999999999999999999999999999875     799999


Q ss_pred             cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++... .+....|+.+||+||+..+
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~   96 (252)
T PRK14272         69 DGQDIYGPRVDPVAMRRRVGMVFQKPNP   96 (252)
T ss_pred             CCEEcccCccCHHHhhceeEEEeccCcc
Confidence            99988421 1234668889999998643

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.63  E-value=7.3e-16  Score=166.58  Aligned_cols=86  Identities=31%  Similarity=0.519  Sum_probs=73.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   68 (501)
T PRK10762          4 LLQLKGIDKAFPGV---------------KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV   68 (501)
T ss_pred             eEEEeeeEEEeCCe---------------EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            58999999999542               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ......+..++.+||+||+..
T Consensus        69 ~~~~~~~~~~~~i~~v~q~~~   89 (501)
T PRK10762         69 TFNGPKSSQEAGIGIIHQELN   89 (501)
T ss_pred             CCCCHHHHHhCCEEEEEcchh
Confidence            432222234678999999753

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=9.9e-16  Score=150.95  Aligned_cols=89  Identities=25%  Similarity=0.446  Sum_probs=75.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i  478 (510)
                      ...++++++++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+  |   ++|+|
T Consensus         4 ~~~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   68 (253)
T PRK14261          4 EIILSTKNLNLWYGEK---------------HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI   68 (253)
T ss_pred             cceEEEeeeEEEECCe---------------eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence            3468999999999542               59999999999999999999999999999999999975  3   48999


Q ss_pred             EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++... .+..+.++.+||+||...+
T Consensus        69 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   98 (253)
T PRK14261         69 LYNGENIMDSGADVVALRRKIGMVFQRPNP   98 (253)
T ss_pred             EECCEEccccccchhhhhceEEEEecCCcc
Confidence            9999998431 1345668889999998644

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1e-15  Score=153.45  Aligned_cols=88  Identities=20%  Similarity=0.432  Sum_probs=75.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ++.+++++++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++     |++|+|
T Consensus        37 ~~~l~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I  101 (285)
T PRK14254         37 ETVIEARDLNVFYGDE---------------QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL  101 (285)
T ss_pred             CceEEEEEEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence            4569999999999542               59999999999999999999999999999999999987     689999


Q ss_pred             EEcCeecCCc-ccHHHhhccEEEEccCCC
Q 010435          479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~  506 (510)
                      .++|.++... .+....++.+||+||+..
T Consensus       102 ~i~G~~i~~~~~~~~~~~~~i~~v~q~~~  130 (285)
T PRK14254        102 TFRGKNVYDADVDPVALRRRIGMVFQKPN  130 (285)
T ss_pred             EECCEEccccccchHhhhccEEEEecCCc
Confidence            9999987421 123456889999999864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.63  E-value=8.3e-16  Score=166.57  Aligned_cols=87  Identities=29%  Similarity=0.389  Sum_probs=74.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +.++++|++|.|+++               .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus         4 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~   68 (510)
T PRK09700          4 PYISMAGIGKSFGPV---------------HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN   68 (510)
T ss_pred             ceEEEeeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE
Confidence            358999999999542               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +......+..++.+||+||+..
T Consensus        69 i~~~~~~~~~~~~i~~v~q~~~   90 (510)
T PRK09700         69 YNKLDHKLAAQLGIGIIYQELS   90 (510)
T ss_pred             CCCCCHHHHHHCCeEEEeeccc
Confidence            8532222234567999999864

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.63  E-value=7.6e-16  Score=148.88  Aligned_cols=80  Identities=29%  Similarity=0.503  Sum_probs=69.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~l~~v~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~   65 (223)
T TIGR03740         1 LETKNLSKRFGKQ---------------TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT   65 (223)
T ss_pred             CEEEeEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence            3688999999532               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCC
Q 010435          487 SSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      . .   . ++.+||+||.+.
T Consensus        66 ~-~---~-~~~~~~~~q~~~   80 (223)
T TIGR03740        66 R-K---D-LHKIGSLIESPP   80 (223)
T ss_pred             c-c---c-cccEEEEcCCCC
Confidence            2 1   1 357999999764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.63  E-value=9.9e-16  Score=144.68  Aligned_cols=85  Identities=28%  Similarity=0.394  Sum_probs=72.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCe
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF  483 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~  483 (510)
                      .++++++++.|++..           +.+.+++++||++++||+++|+|+|||||||++++|+|+.  +|++|++.++|.
T Consensus         3 ~l~~~~l~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~   71 (192)
T cd03232           3 VLTWKNLNYTVPVKG-----------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR   71 (192)
T ss_pred             EEEEeeeEEEecCCC-----------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE
Confidence            478999999996421           0125999999999999999999999999999999999986  489999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ++.     .+.++.+||++|.+.
T Consensus        72 ~~~-----~~~~~~i~~~~q~~~   89 (192)
T cd03232          72 PLD-----KNFQRSTGYVEQQDV   89 (192)
T ss_pred             ehH-----HHhhhceEEecccCc
Confidence            872     456788999999753

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1e-15  Score=151.91  Aligned_cols=87  Identities=23%  Similarity=0.489  Sum_probs=74.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~  479 (510)
                      ..+++++++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|+
T Consensus         9 ~~l~i~~v~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   73 (264)
T PRK14243          9 TVLRTENLNVYYGSF---------------LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT   73 (264)
T ss_pred             eEEEEeeeEEEECCE---------------EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence            468999999999532               58999999999999999999999999999999999976     4899999


Q ss_pred             EcCeecCC-cccHHHhhccEEEEccCCC
Q 010435          480 IYGFSIRS-SVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ++|.++.. ..+..+.|+.+||+||+..
T Consensus        74 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~  101 (264)
T PRK14243         74 FHGKNLYAPDVDPVEVRRRIGMVFQKPN  101 (264)
T ss_pred             ECCEEccccccChHHHhhhEEEEccCCc
Confidence            99998742 1234566889999999864

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=7.6e-16  Score=152.15  Aligned_cols=88  Identities=19%  Similarity=0.343  Sum_probs=73.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC-
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-  482 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g-  482 (510)
                      .+.+.+++++|.|+++               .+++|+||++.+||+++|+|+||||||||+++|+|+.+|++|+|.++| 
T Consensus         8 ~~~i~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~   72 (257)
T PRK14246          8 EDVFNISRLYLYINDK---------------AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK   72 (257)
T ss_pred             hhheeeeeEEEecCCc---------------eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCE
Confidence            4569999999999643               599999999999999999999999999999999999999997777766 


Q ss_pred             -----eecCCcccHHHhhccEEEEccCCCc
Q 010435          483 -----FSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       483 -----~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                           .++.. .+..+.|+.+||+||.+.+
T Consensus        73 ~~~~g~~~~~-~~~~~~~~~i~~~~q~~~~  101 (257)
T PRK14246         73 VLYFGKDIFQ-IDAIKLRKEVGMVFQQPNP  101 (257)
T ss_pred             EEECCccccc-CCHHHHhcceEEEccCCcc
Confidence                 44421 2345678899999998654

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=151.48  Aligned_cols=89  Identities=19%  Similarity=0.341  Sum_probs=75.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i  478 (510)
                      ...+++++++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        14 ~~~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i   78 (265)
T PRK14252         14 QQKSEVNKLNFYYGGY---------------QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI   78 (265)
T ss_pred             CceEEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE
Confidence            4569999999999642               599999999999999999999999999999999999875     79999


Q ss_pred             EEcCeecC---CcccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIR---SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~---~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.   ...+..+.++.+||+||+..+
T Consensus        79 ~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~  110 (265)
T PRK14252         79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNP  110 (265)
T ss_pred             EEcCccccccccccCHHHHhccEEEEccCCcC
Confidence            99998763   112234668899999998643

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.63  E-value=6.4e-16  Score=145.64  Aligned_cols=71  Identities=28%  Similarity=0.449  Sum_probs=63.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC-cccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~-~~~~~~~r~~iG~cpQ~~  505 (510)
                      .+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ..+....++.+||+||..
T Consensus         6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   77 (190)
T TIGR01166         6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP   77 (190)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence            59999999999999999999999999999999999999999999999998741 123445678899999985

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=9.9e-16  Score=151.51  Aligned_cols=88  Identities=24%  Similarity=0.465  Sum_probs=75.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~  479 (510)
                      ..+++++++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.
T Consensus         6 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~   70 (259)
T PRK14260          6 PAIKVKDLSFYYNTS---------------KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD   70 (259)
T ss_pred             ceEEEEEEEEEECCe---------------EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE
Confidence            368999999999542               599999999999999999999999999999999999985     489999


Q ss_pred             EcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          480 IYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++|.++.. ..+.+..++.+||+||...+
T Consensus        71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~l   99 (259)
T PRK14260         71 FFGQNIYDPRININRLRRQIGMVFQRPNP   99 (259)
T ss_pred             ECCEeccccccchHhhhhheEEEeccccc
Confidence            99998742 12345667899999998654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=149.99  Aligned_cols=88  Identities=25%  Similarity=0.440  Sum_probs=73.7

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC---ccC--CcceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI---TPV--TGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~---~~p--t~G~i~  479 (510)
                      +.+++++++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+   .+|  ++|+|.
T Consensus         2 ~~l~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~   66 (250)
T PRK14245          2 VKIDARDVNFWYGDF---------------HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR   66 (250)
T ss_pred             cEEEEEEEEEEECCE---------------eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE
Confidence            358899999999542               599999999999999999999999999999999997   455  589999


Q ss_pred             EcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          480 IYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++|.++... .+....|+.+||+||...+
T Consensus        67 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   95 (250)
T PRK14245         67 IDGRNIYDKGVQVDELRKNVGMVFQRPNP   95 (250)
T ss_pred             ECCEecccccccHHHHhhheEEEecCCcc
Confidence            999998421 1245678899999998643

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.63  E-value=8.1e-16  Score=149.93  Aligned_cols=82  Identities=22%  Similarity=0.473  Sum_probs=71.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++                ++++++||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus         1 l~~~~l~~~~~~----------------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~   64 (235)
T cd03299           1 LKVENLSKDWKE----------------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT   64 (235)
T ss_pred             CeeEeEEEEeCC----------------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence            367899999953                3899999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ...++.+|||||.+.+
T Consensus        65 ~~---~~~~~~i~~~~q~~~~   82 (235)
T cd03299          65 NL---PPEKRDISYVPQNYAL   82 (235)
T ss_pred             cC---ChhHcCEEEEeecCcc
Confidence            31   2236789999998643

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.63  E-value=7.7e-16  Score=173.19  Aligned_cols=88  Identities=19%  Similarity=0.355  Sum_probs=80.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++              ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|+++|.|
T Consensus       472 ~~I~~~~vsf~y~~~--------------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~  537 (708)
T TIGR01193       472 GDIVINDVSYSYGYG--------------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS  537 (708)
T ss_pred             CcEEEEEEEEEcCCC--------------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence            469999999999632              158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|||||++.|
T Consensus       538 i~~-~~~~~lr~~i~~v~Q~~~l  559 (708)
T TIGR01193       538 LKD-IDRHTLRQFINYLPQEPYI  559 (708)
T ss_pred             HHH-cCHHHHHHheEEEecCcee
Confidence            963 5678899999999999765

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.1e-15  Score=165.31  Aligned_cols=87  Identities=28%  Similarity=0.433  Sum_probs=75.5

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +.++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus         3 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~   67 (501)
T PRK11288          3 PYLSFDGIGKTFPGV---------------KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE   67 (501)
T ss_pred             ceEEEeeeEEEECCE---------------EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence            368999999999542               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +......+..|+.+||+||+..
T Consensus        68 i~~~~~~~~~~~~i~~v~q~~~   89 (501)
T PRK11288         68 MRFASTTAALAAGVAIIYQELH   89 (501)
T ss_pred             CCCCCHHHHHhCCEEEEEechh
Confidence            8532223456788999999753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.2e-15  Score=153.06  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=74.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ++.++++++++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        37 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I  101 (286)
T PRK14275         37 KPHVVAKNFSIYYGEF---------------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL  101 (286)
T ss_pred             ceEEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE
Confidence            4568999999999542               59999999999999999999999999999999999864     499999


Q ss_pred             EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++... .+....|+.+||+||++.+
T Consensus       102 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l  131 (286)
T PRK14275        102 MFDGEDIYGKFTDEVLLRKKIGMVFQKPNP  131 (286)
T ss_pred             EECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence            9999987421 1233568899999998643

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.62  E-value=6.1e-16  Score=173.78  Aligned_cols=90  Identities=20%  Similarity=0.429  Sum_probs=80.8

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.            ++.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus       477 ~~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~  544 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRP------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP  544 (711)
T ss_pred             CeEEEEEEEEECCCCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence            4699999999997531            1258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+..|+++|||||++.|
T Consensus       545 i~~-~~~~~lr~~i~~v~Q~~~l  566 (711)
T TIGR00958       545 LVQ-YDHHYLHRQVALVGQEPVL  566 (711)
T ss_pred             HHh-cCHHHHHhhceEEecCccc
Confidence            963 5678899999999998865

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.62  E-value=9.7e-16  Score=147.60  Aligned_cols=86  Identities=14%  Similarity=0.185  Sum_probs=71.7

Q ss_pred             EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (510)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~  487 (510)
                      .+.++.+.|++.              ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++..
T Consensus         2 ~~~~~~~~~~~~--------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~   67 (218)
T cd03290           2 QVTNGYFSWGSG--------------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESE   67 (218)
T ss_pred             eeeeeEEecCCC--------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccc
Confidence            577888999643              159999999999999999999999999999999999999999999999988742


Q ss_pred             cc---cHHHhhccEEEEccCCCc
Q 010435          488 SV---SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       488 ~~---~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   .....|+.+||+||+..+
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~   90 (218)
T cd03290          68 PSFEATRSRNRYSVAYAAQKPWL   90 (218)
T ss_pred             ccccccchhhcceEEEEcCCCcc
Confidence            11   122356789999998643

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.5e-15  Score=150.31  Aligned_cols=89  Identities=19%  Similarity=0.293  Sum_probs=75.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i  478 (510)
                      +..+.++++++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++|     ++|+|
T Consensus         6 ~~~~~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i   70 (261)
T PRK14263          6 PIVMDCKLDKIFYGNF---------------MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV   70 (261)
T ss_pred             CceEEEEeEEEEeCCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE
Confidence            4578999999999532               599999999999999999999999999999999999986     79999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.. ......+|+.+||+||...+
T Consensus        71 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  100 (261)
T PRK14263         71 HFLGQDVYGKGVDPVVVRRYIGMVFQQPNP  100 (261)
T ss_pred             EECCEeccccccchHhhhhceEEEecCCcc
Confidence            999999842 11234567889999998654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.62  E-value=5.3e-16  Score=154.29  Aligned_cols=85  Identities=21%  Similarity=0.419  Sum_probs=70.3

Q ss_pred             EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (510)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~  487 (510)
                      .+++++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus        26 ~~~~~~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~   90 (269)
T cd03294          26 SKEEILKKTGQT---------------VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAA   90 (269)
T ss_pred             hhhhhhhhcCCc---------------eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc
Confidence            456788888542               58999999999999999999999999999999999999999999999998743


Q ss_pred             cc--cHHHh-hccEEEEccCCCc
Q 010435          488 SV--SMTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       488 ~~--~~~~~-r~~iG~cpQ~~~L  507 (510)
                      ..  +..+. ++.+||+||++.+
T Consensus        91 ~~~~~~~~~~~~~i~~v~q~~~~  113 (269)
T cd03294          91 MSRKELRELRRKKISMVFQSFAL  113 (269)
T ss_pred             cChhhhhhhhcCcEEEEecCccc
Confidence            11  11122 4689999998644

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.62  E-value=8.9e-16  Score=147.36  Aligned_cols=80  Identities=18%  Similarity=0.312  Sum_probs=69.6

Q ss_pred             EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (510)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~  487 (510)
                      +++|++|.|++                 .++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         2 ~~~~l~~~~~~-----------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   64 (213)
T TIGR01277         2 ALDKVRYEYEH-----------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG   64 (213)
T ss_pred             eEEeeeEEeCC-----------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence            67899999942                 3579999999999999999999999999999999999999999999999843


Q ss_pred             cccHHHhhccEEEEccCCCc
Q 010435          488 SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       488 ~~~~~~~r~~iG~cpQ~~~L  507 (510)
                         ....++.+||+||...+
T Consensus        65 ---~~~~~~~i~~v~q~~~~   81 (213)
T TIGR01277        65 ---LAPYQRPVSMLFQENNL   81 (213)
T ss_pred             ---CChhccceEEEeccCcc
Confidence               22457889999998643

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.62  E-value=1.4e-15  Score=164.72  Aligned_cols=86  Identities=29%  Similarity=0.431  Sum_probs=74.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        10 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   74 (510)
T PRK15439         10 PLLCARSISKQYSGV---------------EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP   74 (510)
T ss_pred             ceEEEEeEEEEeCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence            469999999999642               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHH-hhccEEEEccCCC
Q 010435          485 IRSSVSMTN-IQKSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~~~~-~r~~iG~cpQ~~~  506 (510)
                      +... ...+ .++.+||+||+..
T Consensus        75 ~~~~-~~~~~~~~~i~~v~q~~~   96 (510)
T PRK15439         75 CARL-TPAKAHQLGIYLVPQEPL   96 (510)
T ss_pred             CCCC-CHHHHHhCCEEEEeccCc
Confidence            8532 2233 3457999999864

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.6e-15  Score=151.20  Aligned_cols=89  Identities=18%  Similarity=0.412  Sum_probs=75.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i  478 (510)
                      ...++++++++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        18 ~~~l~~~nl~~~~~~~---------------~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   82 (274)
T PRK14265         18 HSVFEVEGVKVFYGGF---------------LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL   82 (274)
T ss_pred             CceEEEeeEEEEeCCe---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence            3479999999999642               599999999999999999999999999999999999863     68999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.. .......|+.+||+||+..+
T Consensus        83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l  112 (274)
T PRK14265         83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNP  112 (274)
T ss_pred             EECCEecccccchhHHHhhcEEEEccCCcc
Confidence            999998742 11234568899999998643

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.6e-15  Score=149.30  Aligned_cols=88  Identities=20%  Similarity=0.368  Sum_probs=73.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cC---CcceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PV---TGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~p---t~G~i~  479 (510)
                      ..+++++++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.  +|   ++|+|.
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~   68 (252)
T PRK14239          4 PILQVSDLSVYYNKK---------------KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV   68 (252)
T ss_pred             ceEEEEeeEEEECCe---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence            358999999999642               5999999999999999999999999999999999985  46   589999


Q ss_pred             EcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          480 IYGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++|.++... .+....|+.+||+||+..+
T Consensus        69 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   97 (252)
T PRK14239         69 YNGHNIYSPRTDTVDLRKEIGMVFQQPNP   97 (252)
T ss_pred             ECCEECcCcccchHhhhhcEEEEecCCcc
Confidence            999988421 1234567889999998643

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=1.1e-15  Score=165.41  Aligned_cols=87  Identities=24%  Similarity=0.431  Sum_probs=74.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcC
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYG  482 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g  482 (510)
                      ..++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|  ++|+|+++|
T Consensus         4 ~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g   68 (506)
T PRK13549          4 YLLEMKNITKTFGGV---------------KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG   68 (506)
T ss_pred             ceEEEeeeEEEeCCe---------------EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence            358999999999532               599999999999999999999999999999999999996  899999999


Q ss_pred             eecCCcccHHHhhccEEEEccCCC
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .++......+..|+.+||+||...
T Consensus        69 ~~~~~~~~~~~~~~~i~~v~q~~~   92 (506)
T PRK13549         69 EELQASNIRDTERAGIAIIHQELA   92 (506)
T ss_pred             EECCCCCHHHHHHCCeEEEEeccc
Confidence            998532212234678999999753

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.62  E-value=8e-16  Score=142.42  Aligned_cols=87  Identities=28%  Similarity=0.553  Sum_probs=78.2

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-----ceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-----GDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-----G~i  478 (510)
                      ...+++++|++.|+..               .||+|||++++++++++|+||+||||||+++++.++....+     |+|
T Consensus         5 ~~~~~~~~l~~yYg~~---------------~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v   69 (253)
T COG1117           5 IPAIEVRDLNLYYGDK---------------HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV   69 (253)
T ss_pred             cceeEecceeEEECch---------------hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE
Confidence            4578999999999643               69999999999999999999999999999999999988775     999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCC
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~  505 (510)
                      .++|.+|.+ ..+.-++|+++|+|+|.+
T Consensus        70 ~~~g~ni~~~~~d~~~lRr~vGMVFQkP   97 (253)
T COG1117          70 LLDGKNIYDPKVDVVELRRRVGMVFQKP   97 (253)
T ss_pred             EECCeeccCCCCCHHHHHHHheeeccCC
Confidence            999999964 346889999999999965

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=1.5e-15  Score=154.93  Aligned_cols=89  Identities=15%  Similarity=0.303  Sum_probs=73.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc----CCcceEEEc
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY  481 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~----pt~G~i~i~  481 (510)
                      .++++||++.|+.+.           +.+.||+|+||++++||++||+|+||||||||+++|+|+++    |++|+|.++
T Consensus         3 ~L~v~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~   71 (326)
T PRK11022          3 LLNVDKLSVHFGDES-----------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFN   71 (326)
T ss_pred             eEEEeCeEEEECCCC-----------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEEC
Confidence            478999999996531           12469999999999999999999999999999999999997    489999999


Q ss_pred             CeecCCcc--cHHHhh-ccEEEEccCC
Q 010435          482 GFSIRSSV--SMTNIQ-KSIGVCPQVT  505 (510)
Q Consensus       482 g~~i~~~~--~~~~~r-~~iG~cpQ~~  505 (510)
                      |.++....  +..+.| +.+||+||..
T Consensus        72 G~~i~~~~~~~~~~~r~~~i~~v~Q~~   98 (326)
T PRK11022         72 GQDLQRISEKERRNLVGAEVAMIFQDP   98 (326)
T ss_pred             CEECCcCCHHHHHHHhCCCEEEEecCc
Confidence            99985321  222333 4799999976

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=2e-15  Score=152.74  Aligned_cols=88  Identities=25%  Similarity=0.491  Sum_probs=76.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      +..++++|+++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++     |++|+|
T Consensus        43 ~~~l~i~nl~~~~~~~---------------~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I  107 (305)
T PRK14264         43 DAKLSVEDLDVYYGDD---------------HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV  107 (305)
T ss_pred             CceEEEEEEEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            4579999999999642               59999999999999999999999999999999999986     689999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCC
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +++|.++.. ..+...+|+.+|||||...
T Consensus       108 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~  136 (305)
T PRK14264        108 ELDGQDIYQDGVNLVELRKRVGMVFQSPN  136 (305)
T ss_pred             EECCEEcccccccHHHHhhceEEEccCCc
Confidence            999998742 1234567889999999864

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.62  E-value=1.1e-15  Score=166.44  Aligned_cols=89  Identities=25%  Similarity=0.477  Sum_probs=80.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++++             +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       319 ~~i~~~~v~f~y~~~~-------------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~  385 (529)
T TIGR02857       319 PSLEFSGLSVAYPGRR-------------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP  385 (529)
T ss_pred             CeEEEEEEEEECCCCC-------------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence            3699999999997531             258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|||||++.|
T Consensus       386 i~~-~~~~~lr~~i~~v~Q~~~l  407 (529)
T TIGR02857       386 LAD-ADADSWRDQIAWVPQHPFL  407 (529)
T ss_pred             hhh-CCHHHHHhheEEEcCCCcc
Confidence            964 5678899999999998754

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.62  E-value=1.3e-15  Score=151.54  Aligned_cols=94  Identities=17%  Similarity=0.266  Sum_probs=75.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++....      +++.++.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~nl~~~~~~~~~~------~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~   76 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLS------GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL   76 (268)
T ss_pred             eEEEeceEEEecCCccc------cccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence            47899999999631000      000012699999999999999999999999999999999999999999999999987


Q ss_pred             CCcc--cHHHhhccEEEEccCC
Q 010435          486 RSSV--SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~--~~~~~r~~iG~cpQ~~  505 (510)
                      ....  +....++.+||+||..
T Consensus        77 ~~~~~~~~~~~~~~i~~v~q~~   98 (268)
T PRK10419         77 AKLNRAQRKAFRRDIQMVFQDS   98 (268)
T ss_pred             cccChhHHHHHHhcEEEEEcCh
Confidence            4311  2245678999999985

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.6e-15  Score=149.11  Aligned_cols=87  Identities=25%  Similarity=0.452  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~i  480 (510)
                      .++++++++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|.+
T Consensus         3 ~l~~~~v~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~   67 (250)
T PRK14266          3 RIEVENLNTYFDDA---------------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL   67 (250)
T ss_pred             EEEEEeEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE
Confidence            47899999999532               59999999999999999999999999999999999864     48999999


Q ss_pred             cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|.++... .+..+.++.+|||||+..+
T Consensus        68 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14266         68 DGVDIYDPAVDVVELRKKVGMVFQKPNP   95 (250)
T ss_pred             CCEEcccccccHHHHhhheEEEecCCcc
Confidence            99988421 2355678899999998643

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.62  E-value=1.1e-15  Score=158.11  Aligned_cols=101  Identities=14%  Similarity=0.312  Sum_probs=76.1

Q ss_pred             EEEeeeEEEcCCCCCcc------cccc---cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          407 VQIRGLVKTFPGTRKIG------CCCK---CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~------~~~~---~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      ++++||+|.|+.+....      +..+   .++.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+
T Consensus         1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~   80 (382)
T TIGR03415         1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS   80 (382)
T ss_pred             CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            46788888887643200      0000   13445667999999999999999999999999999999999999999999


Q ss_pred             EEEcCe----ecCCc--ccHHHhh-ccEEEEccCCCc
Q 010435          478 ALIYGF----SIRSS--VSMTNIQ-KSIGVCPQVTLF  507 (510)
Q Consensus       478 i~i~g~----~i~~~--~~~~~~r-~~iG~cpQ~~~L  507 (510)
                      |+++|.    ++...  .+..+.| +.+||+||+..|
T Consensus        81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l  117 (382)
T TIGR03415        81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL  117 (382)
T ss_pred             EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence            999996    44211  1233344 589999998765

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.61  E-value=1.3e-15  Score=147.53  Aligned_cols=86  Identities=19%  Similarity=0.288  Sum_probs=73.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEcC
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG  482 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~g  482 (510)
                      .+.+++++++|++..           ..+.+++++||++++||+++|+|||||||||++++|+|+++   |++|++.++|
T Consensus         3 ~~~~~~~~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g   71 (226)
T cd03234           3 VLPWWDVGLKAKNWN-----------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG   71 (226)
T ss_pred             cceeecceeeeecCc-----------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC
Confidence            356889999996531           02369999999999999999999999999999999999999   9999999999


Q ss_pred             eecCCcccHHHhhccEEEEccCCC
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .++.    ....|+.+||+||.+.
T Consensus        72 ~~~~----~~~~~~~i~~~~q~~~   91 (226)
T cd03234          72 QPRK----PDQFQKCVAYVRQDDI   91 (226)
T ss_pred             EECC----hHHhcccEEEeCCCCc
Confidence            9873    2356889999999864

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.61  E-value=1.4e-15  Score=150.07  Aligned_cols=81  Identities=21%  Similarity=0.397  Sum_probs=71.4

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC----CcceEEEc
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIY  481 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p----t~G~i~i~  481 (510)
                      .++++|++|.| +.               .+++++||++++||+++|+|+||||||||+++|+|+.+|    ++|+|+++
T Consensus         4 ~l~~~~l~~~~-~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~   67 (254)
T PRK10418          4 QIELRNIALQA-AQ---------------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD   67 (254)
T ss_pred             EEEEeCeEEEe-cc---------------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEEC
Confidence            58999999999 22               489999999999999999999999999999999999999    99999999


Q ss_pred             CeecCCcccHHHhhccEEEEccCC
Q 010435          482 GFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       482 g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      |.++..   .+..++.+||+||..
T Consensus        68 g~~i~~---~~~~~~~i~~v~q~~   88 (254)
T PRK10418         68 GKPVAP---CALRGRKIATIMQNP   88 (254)
T ss_pred             Ceeccc---cccccceEEEEecCC
Confidence            998842   223346799999985

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.61  E-value=1.4e-15  Score=170.69  Aligned_cols=89  Identities=25%  Similarity=0.482  Sum_probs=80.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++..             ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.|
T Consensus       462 ~~I~~~~vsf~Y~~~~-------------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~  528 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQE-------------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD  528 (694)
T ss_pred             ceEEEEEEEEEeCCCC-------------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            4699999999996531             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|||||++.|
T Consensus       529 l~~-~~~~~lr~~i~~v~Q~~~l  550 (694)
T TIGR03375       529 IRQ-IDPADLRRNIGYVPQDPRL  550 (694)
T ss_pred             hhh-CCHHHHHhccEEECCChhh
Confidence            963 5678899999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.61  E-value=1.7e-15  Score=139.71  Aligned_cols=75  Identities=21%  Similarity=0.332  Sum_probs=66.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++.              +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.   
T Consensus         1 i~~~~~~~~~~~~--------------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---   63 (166)
T cd03223           1 IELENLSLATPDG--------------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---   63 (166)
T ss_pred             CEEEEEEEEcCCC--------------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---
Confidence            3678999999532              15999999999999999999999999999999999999999999999762   


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                               +.+||+||+..+
T Consensus        64 ---------~~i~~~~q~~~~   75 (166)
T cd03223          64 ---------EDLLFLPQRPYL   75 (166)
T ss_pred             ---------ceEEEECCCCcc
Confidence                     579999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.61  E-value=1.3e-15  Score=167.83  Aligned_cols=89  Identities=21%  Similarity=0.455  Sum_probs=79.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++..             ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       340 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~  406 (582)
T PRK11176        340 GDIEFRNVTFTYPGKE-------------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD  406 (582)
T ss_pred             CeEEEEEEEEecCCCC-------------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence            3599999999996531             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.+ .+.++.|+.+|||||++.|
T Consensus       407 i~~-~~~~~~~~~i~~v~Q~~~l  428 (582)
T PRK11176        407 LRD-YTLASLRNQVALVSQNVHL  428 (582)
T ss_pred             hhh-cCHHHHHhhceEEccCcee
Confidence            863 5677889999999998754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=2.6e-15  Score=153.58  Aligned_cols=90  Identities=17%  Similarity=0.258  Sum_probs=73.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc----CCcceEEEc
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY  481 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~----pt~G~i~i~  481 (510)
                      .++++||+|.|+.+.           +.+.|++|+||+|++||++||+|+||||||||+++|+|+.+    |++|+|.++
T Consensus         3 ~L~v~~l~~~y~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~   71 (330)
T PRK15093          3 LLDIRNLTIEFKTSD-----------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFD   71 (330)
T ss_pred             eEEEeeeEEEEeCCC-----------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEEC
Confidence            588999999996421           12369999999999999999999999999999999999997    589999999


Q ss_pred             CeecCCcc--cHHHh-hccEEEEccCCC
Q 010435          482 GFSIRSSV--SMTNI-QKSIGVCPQVTL  506 (510)
Q Consensus       482 g~~i~~~~--~~~~~-r~~iG~cpQ~~~  506 (510)
                      |.++....  +.... ++.+||+||+..
T Consensus        72 g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         72 DIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             CEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            99985311  12222 357999999763

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=2.6e-15  Score=148.72  Aligned_cols=88  Identities=17%  Similarity=0.435  Sum_probs=75.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEE
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~  479 (510)
                      ..++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|+     +|++.
T Consensus         6 ~~l~~~nl~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~   70 (261)
T PRK14258          6 PAIKVNNLSFYYDTQ---------------KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE   70 (261)
T ss_pred             ceEEEeeEEEEeCCe---------------eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEE
Confidence            368999999999542               5999999999999999999999999999999999999986     89999


Q ss_pred             EcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          480 IYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++|.++.. ..+...+|+.+||+||+..+
T Consensus        71 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~l   99 (261)
T PRK14258         71 FFNQNIYERRVNLNRLRRQVSMVHPKPNL   99 (261)
T ss_pred             ECCEEhhccccchHHhhccEEEEecCCcc
Confidence            99998731 12345678899999997643

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.61  E-value=3e-15  Score=152.87  Aligned_cols=91  Identities=21%  Similarity=0.358  Sum_probs=75.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALI  480 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i  480 (510)
                      ...++++||+|.|+.+.           +.+.||+|+||+|++||++||+|+||||||||+++|+|+++|+   +|+|.+
T Consensus        10 ~~~L~i~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~   78 (330)
T PRK09473         10 DALLDVKDLRVTFSTPD-----------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF   78 (330)
T ss_pred             CceEEEeCeEEEEecCC-----------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence            34689999999996421           1346999999999999999999999999999999999999996   999999


Q ss_pred             cCeecCCc--ccHHHhh-ccEEEEccCC
Q 010435          481 YGFSIRSS--VSMTNIQ-KSIGVCPQVT  505 (510)
Q Consensus       481 ~g~~i~~~--~~~~~~r-~~iG~cpQ~~  505 (510)
                      +|.++...  .+..+.| +.+||+||+.
T Consensus        79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~  106 (330)
T PRK09473         79 NGREILNLPEKELNKLRAEQISMIFQDP  106 (330)
T ss_pred             CCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence            99998532  1233344 4899999986

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.60  E-value=2.4e-15  Score=148.04  Aligned_cols=86  Identities=27%  Similarity=0.400  Sum_probs=72.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcC
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG  482 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g  482 (510)
                      ..++++++++.|++.               .+++++||++++||++||+|+||||||||+++|+|+  ++|++|+++++|
T Consensus         6 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g   70 (252)
T CHL00131          6 PILEIKNLHASVNEN---------------EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG   70 (252)
T ss_pred             ceEEEEeEEEEeCCE---------------EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECC
Confidence            469999999999532               599999999999999999999999999999999998  589999999999


Q ss_pred             eecCCcccHHHhhc-cEEEEccCCC
Q 010435          483 FSIRSSVSMTNIQK-SIGVCPQVTL  506 (510)
Q Consensus       483 ~~i~~~~~~~~~r~-~iG~cpQ~~~  506 (510)
                      .++... +.+..++ .++++||...
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~~q~~~   94 (252)
T CHL00131         71 ESILDL-EPEERAHLGIFLAFQYPI   94 (252)
T ss_pred             EEcccC-ChhhhheeeEEEEecccc
Confidence            988532 2223333 5889999753

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.60  E-value=2e-15  Score=143.94  Aligned_cols=77  Identities=22%  Similarity=0.392  Sum_probs=65.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|+++..          ..+.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|    
T Consensus         1 l~~~~l~~~~~~~~~----------~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----   66 (204)
T cd03250           1 ISVEDASFTWDSGEQ----------ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----   66 (204)
T ss_pred             CEEeEEEEecCCCCc----------cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----
Confidence            468999999964310          002599999999999999999999999999999999999999999999988    


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                ++|||||...+
T Consensus        67 ----------~i~~~~q~~~l   77 (204)
T cd03250          67 ----------SIAYVSQEPWI   77 (204)
T ss_pred             ----------EEEEEecCchh
Confidence                      58999998643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.60  E-value=2.3e-15  Score=135.48  Aligned_cols=70  Identities=27%  Similarity=0.370  Sum_probs=63.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++.               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.   
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---   62 (144)
T cd03221           1 IELENLSKTYGGK---------------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---   62 (144)
T ss_pred             CEEEEEEEEECCc---------------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---
Confidence            3678999999542               5999999999999999999999999999999999999999999999883   


Q ss_pred             CcccHHHhhccEEEEcc
Q 010435          487 SSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ  503 (510)
                               +.++|+||
T Consensus        63 ---------~~i~~~~~   70 (144)
T cd03221          63 ---------VKIGYFEQ   70 (144)
T ss_pred             ---------EEEEEEcc
Confidence                     36888888

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.60  E-value=2.3e-15  Score=166.14  Aligned_cols=88  Identities=19%  Similarity=0.362  Sum_probs=79.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++++++.|+++              ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.|
T Consensus       339 ~~i~~~~v~f~y~~~--------------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~  404 (592)
T PRK10790        339 GRIDIDNVSFAYRDD--------------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRP  404 (592)
T ss_pred             CeEEEEEEEEEeCCC--------------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence            359999999999642              148999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+..|+++|||||++.|
T Consensus       405 i~~-~~~~~l~~~i~~v~Q~~~l  426 (592)
T PRK10790        405 LSS-LSHSVLRQGVAMVQQDPVV  426 (592)
T ss_pred             hhh-CCHHHHHhheEEEccCCcc
Confidence            963 5788999999999998765

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.60  E-value=2.4e-15  Score=164.27  Aligned_cols=88  Identities=19%  Similarity=0.322  Sum_probs=79.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++              ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       321 ~~i~~~~v~f~y~~~--------------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  386 (547)
T PRK10522        321 QTLELRNVTFAYQDN--------------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP  386 (547)
T ss_pred             ceEEEEEEEEEeCCC--------------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence            369999999999642              148999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++||+||++.|
T Consensus       387 ~~~-~~~~~~~~~i~~v~q~~~l  408 (547)
T PRK10522        387 VTA-EQPEDYRKLFSAVFTDFHL  408 (547)
T ss_pred             CCC-CCHHHHhhheEEEecChhH
Confidence            863 5677899999999998754

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.60  E-value=6.9e-16  Score=139.27  Aligned_cols=93  Identities=25%  Similarity=0.343  Sum_probs=77.4

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      -++++||+|.|..+...      .++..+.||+.+||++++||..+++|.||+||||+.+||+|+++||+|++.+||+.+
T Consensus         4 LLeV~nLsKtF~~~~~l------f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L   77 (267)
T COG4167           4 LLEVRNLSKTFRYRTGL------FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL   77 (267)
T ss_pred             hhhhhhhhhhhhhhhhh------hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc
Confidence            46789999999765321      234466899999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .- .+-....++|-+++|++
T Consensus        78 ~~-~Dy~~R~k~IRMiFQDp   96 (267)
T COG4167          78 HF-GDYSFRSKRIRMIFQDP   96 (267)
T ss_pred             cc-cchHhhhhheeeeecCC
Confidence            42 34444457899999975

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=2.5e-15  Score=146.15  Aligned_cols=81  Identities=15%  Similarity=0.309  Sum_probs=69.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|++.               .  .++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   64 (232)
T PRK10771          2 LKLTDITWLYHHL---------------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT   64 (232)
T ss_pred             eEEEEEEEEECCc---------------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecC
Confidence            6799999999531               1  2899999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ...++.+||+||...+
T Consensus        65 ~~---~~~~~~i~~~~q~~~~   82 (232)
T PRK10771         65 TT---PPSRRPVSMLFQENNL   82 (232)
T ss_pred             cC---ChhhccEEEEeccccc
Confidence            21   1235789999998643

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=2.3e-15  Score=148.19  Aligned_cols=85  Identities=19%  Similarity=0.374  Sum_probs=71.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEEEc
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALIY  481 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~i~  481 (510)
                      -+++++++.|++.               .+++++||++.+||+++|+|+||||||||+++|+|+.+     |++|+|.++
T Consensus         6 ~~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~   70 (251)
T PRK14244          6 ASVKNLNLWYGSK---------------QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID   70 (251)
T ss_pred             EEeeeEEEEECCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEEC
Confidence            4688999999532               59999999999999999999999999999999999986     479999999


Q ss_pred             CeecCCc-ccHHHhhccEEEEccCCC
Q 010435          482 GFSIRSS-VSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       482 g~~i~~~-~~~~~~r~~iG~cpQ~~~  506 (510)
                      |.++... .+...+|+.+||+||+..
T Consensus        71 g~~i~~~~~~~~~~~~~i~~v~q~~~   96 (251)
T PRK14244         71 GIDVYSVDTNVVLLRAKVGMVFQKPN   96 (251)
T ss_pred             CEehHhcccchHHHhhhEEEEecCcc
Confidence            9987321 122356889999999864

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=4.3e-15  Score=151.65  Aligned_cols=91  Identities=22%  Similarity=0.379  Sum_probs=77.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i  478 (510)
                      ...++++|+++.|.+.             ...+++|+||+|++||++||+|+||||||||+++|.|+.+     |++|+|
T Consensus        78 ~~~i~~~nls~~y~~~-------------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I  144 (329)
T PRK14257         78 ANVFEIRNFNFWYMNR-------------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI  144 (329)
T ss_pred             CceEEEEeeEEEecCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            4579999999999642             1259999999999999999999999999999999999986     579999


Q ss_pred             EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435          479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|.++.. .....++|+.+|||||...+
T Consensus       145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~  174 (329)
T PRK14257        145 YFLGTNTRSKKISSLELRTRIGMVFQKPTP  174 (329)
T ss_pred             EECCEEccccccchHhhhccEEEEecCCcc
Confidence            999999852 12345678999999998654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.60  E-value=1.8e-15  Score=169.76  Aligned_cols=89  Identities=18%  Similarity=0.345  Sum_probs=80.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++..             +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       454 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~  520 (694)
T TIGR01846       454 GAITFENIRFRYAPDS-------------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD  520 (694)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence            4699999999996431             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+.+|||||++.|
T Consensus       521 i~~-~~~~~~r~~i~~v~q~~~l  542 (694)
T TIGR01846       521 LAI-ADPAWLRRQMGVVLQENVL  542 (694)
T ss_pred             hhh-CCHHHHHHhCeEEccCCee
Confidence            963 5678899999999998755

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.59  E-value=2.8e-15  Score=145.00  Aligned_cols=93  Identities=23%  Similarity=0.358  Sum_probs=71.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc--Ce-
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY--GF-  483 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~--g~-  483 (510)
                      ++++|++|.|++..+        .+..+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++  |. 
T Consensus         2 l~~~~l~~~~~~~~~--------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~   73 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQ--------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW   73 (224)
T ss_pred             EEEEeeEEEeecccC--------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCc
Confidence            678999999964210        0001369999999999999999999999999999999999999999999998  42 


Q ss_pred             -ecCCc--ccHHHh-hccEEEEccCCCc
Q 010435          484 -SIRSS--VSMTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       484 -~i~~~--~~~~~~-r~~iG~cpQ~~~L  507 (510)
                       ++...  .+..+. ++.+||+||...+
T Consensus        74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~  101 (224)
T TIGR02324        74 VDLAQASPREVLEVRRKTIGYVSQFLRV  101 (224)
T ss_pred             cchhhcCHHHHHHHHhcceEEEeccccc
Confidence             44211  111223 4579999998643

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.59  E-value=3.3e-15  Score=147.01  Aligned_cols=75  Identities=25%  Similarity=0.459  Sum_probs=67.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|   
T Consensus         4 ~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---   65 (251)
T PRK09544          4 LVSLENVSVSFGQR---------------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---   65 (251)
T ss_pred             EEEEeceEEEECCc---------------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---
Confidence            58999999999642               599999999999999999999999999999999999999999999976   


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                               ++.+||+||+..+
T Consensus        66 ---------~~~i~~v~q~~~~   78 (251)
T PRK09544         66 ---------KLRIGYVPQKLYL   78 (251)
T ss_pred             ---------ccCEEEecccccc
Confidence                     2369999998643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.59  E-value=3.2e-15  Score=161.61  Aligned_cols=85  Identities=28%  Similarity=0.451  Sum_probs=72.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCee
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFS  484 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~  484 (510)
                      ++++|++|.|++.               .+++++||++++||++||+|+||||||||+++|+|+.+|  ++|+|.++|.+
T Consensus         2 l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~   66 (500)
T TIGR02633         2 LEMKGIVKTFGGV---------------KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP   66 (500)
T ss_pred             EEEEeEEEEeCCe---------------EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence            6899999999532               599999999999999999999999999999999999987  79999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +......+..++.+||+||...
T Consensus        67 ~~~~~~~~~~~~~i~~v~q~~~   88 (500)
T TIGR02633        67 LKASNIRDTERAGIVIIHQELT   88 (500)
T ss_pred             CCCCCHHHHHhCCEEEEeeccc
Confidence            8532222234678999999753

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.59  E-value=3.8e-15  Score=162.67  Aligned_cols=89  Identities=22%  Similarity=0.431  Sum_probs=79.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++..             +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       315 ~~i~~~~v~~~y~~~~-------------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  381 (544)
T TIGR01842       315 GHLSVENVTIVPPGGK-------------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD  381 (544)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence            4699999999996431             258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+..|+.+|||||++.+
T Consensus       382 i~~-~~~~~~~~~i~~v~q~~~l  403 (544)
T TIGR01842       382 LKQ-WDRETFGKHIGYLPQDVEL  403 (544)
T ss_pred             hhh-CCHHHHhhheEEecCCccc
Confidence            863 4567889999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.59  E-value=4e-15  Score=140.85  Aligned_cols=78  Identities=14%  Similarity=0.251  Sum_probs=66.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++++|.|+++               .++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+++++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (195)
T PRK13541          2 LSLHQLQFNIEQK---------------NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN   65 (195)
T ss_pred             eEEEEeeEEECCc---------------EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence            6789999999531               345 499999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhccEEEEccCC
Q 010435          487 SSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .   ..  ++.++|+||..
T Consensus        66 ~---~~--~~~~~~~~~~~   79 (195)
T PRK13541         66 N---IA--KPYCTYIGHNL   79 (195)
T ss_pred             h---hh--hhhEEeccCCc
Confidence            2   11  45699999965

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.59  E-value=2.7e-15  Score=161.84  Aligned_cols=81  Identities=30%  Similarity=0.521  Sum_probs=70.4

Q ss_pred             eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc
Q 010435          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV  489 (510)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~  489 (510)
                      +|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus         2 ~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~   66 (491)
T PRK10982          2 SNISKSFPGV---------------KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS   66 (491)
T ss_pred             CceEEEeCCE---------------EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC
Confidence            6788999532               5999999999999999999999999999999999999999999999999985322


Q ss_pred             cHHHhhccEEEEccCC
Q 010435          490 SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       490 ~~~~~r~~iG~cpQ~~  505 (510)
                      ..+..|+.+||+||..
T Consensus        67 ~~~~~~~~i~~v~q~~   82 (491)
T PRK10982         67 SKEALENGISMVHQEL   82 (491)
T ss_pred             HHHHHhCCEEEEeccc
Confidence            3345578899999975

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.58  E-value=5.2e-15  Score=135.09  Aligned_cols=79  Identities=29%  Similarity=0.593  Sum_probs=69.8

Q ss_pred             EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (510)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~  488 (510)
                      ++++++.|++.               .++++++|++++||+++|+|+|||||||++++|+|+++|++|+++++|.++.. 
T Consensus         2 ~~~~~~~~~~~---------------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~-   65 (157)
T cd00267           2 IENLSFRYGGR---------------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK-   65 (157)
T ss_pred             eEEEEEEeCCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-
Confidence            57888888542               59999999999999999999999999999999999999999999999998742 


Q ss_pred             ccHHHhhccEEEEcc
Q 010435          489 VSMTNIQKSIGVCPQ  503 (510)
Q Consensus       489 ~~~~~~r~~iG~cpQ  503 (510)
                      ...++.++.++|+||
T Consensus        66 ~~~~~~~~~i~~~~q   80 (157)
T cd00267          66 LPLEELRRRIGYVPQ   80 (157)
T ss_pred             CCHHHHHhceEEEee
Confidence            235567889999998

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.58  E-value=4.5e-15  Score=163.62  Aligned_cols=87  Identities=24%  Similarity=0.331  Sum_probs=77.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|.++              +.+++|+||++++||.++|+|+|||||||++++|+|++ |++|+|.++|.|
T Consensus       348 ~~i~~~~vsf~~~~~--------------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~  412 (588)
T PRK11174        348 VTIEAEDLEILSPDG--------------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE  412 (588)
T ss_pred             ceEEEEeeEEeccCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEe
Confidence            359999999766432              15899999999999999999999999999999999999 999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|||||++.|
T Consensus       413 i~~-~~~~~lr~~i~~v~Q~~~L  434 (588)
T PRK11174        413 LRE-LDPESWRKHLSWVGQNPQL  434 (588)
T ss_pred             ccc-CCHHHHHhheEEecCCCcC
Confidence            974 5678899999999998765

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.58  E-value=2.6e-15  Score=133.49  Aligned_cols=70  Identities=30%  Similarity=0.634  Sum_probs=64.5

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+|+||++++||+++|+|+|||||||++++|+|..+|++|+|.++|.++.. .+....++.++++||.+.+
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~   70 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYVPQDPQL   70 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEEESSHCH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc-ccccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999999964 4567789999999998544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=3.9e-15  Score=156.46  Aligned_cols=87  Identities=28%  Similarity=0.444  Sum_probs=78.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++.+|+++.|++.+              ++++|+||++++||.++|+|+|||||||++++|.|+.+|++|++.+||.+.
T Consensus       320 ei~~~~l~~~y~~g~--------------~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l  385 (559)
T COG4988         320 EISLENLSFRYPDGK--------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL  385 (559)
T ss_pred             eeeecceEEecCCCC--------------cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence            455669999997641              699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++ .+.+.+|++++++||++.|
T Consensus       386 ~~-l~~~~~~k~i~~v~Q~p~l  406 (559)
T COG4988         386 RD-LSPEAWRKQISWVSQNPYL  406 (559)
T ss_pred             cc-cCHHHHHhHeeeeCCCCcc
Confidence            74 5678999999999999865

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.58  E-value=3.5e-15  Score=164.11  Aligned_cols=90  Identities=21%  Similarity=0.415  Sum_probs=80.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.            .+.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       336 ~~i~~~~v~f~y~~~~------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~  403 (576)
T TIGR02204       336 GEIEFEQVNFAYPARP------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD  403 (576)
T ss_pred             ceEEEEEEEEECCCCC------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence            4699999999997531            1258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+.+|||||++.+
T Consensus       404 i~~-~~~~~~~~~i~~~~Q~~~l  425 (576)
T TIGR02204       404 LRQ-LDPAELRARMALVPQDPVL  425 (576)
T ss_pred             HHh-cCHHHHHHhceEEccCCcc
Confidence            963 5677889999999998765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.58  E-value=2.6e-15  Score=142.35  Aligned_cols=84  Identities=26%  Similarity=0.479  Sum_probs=75.6

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|++..|+++               ++|+|+|++|.+||..+|+|+||||||||+++++|..+|++|.+.+.|+
T Consensus        29 ~~li~l~~v~v~r~gk---------------~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~   93 (257)
T COG1119          29 EPLIELKNVSVRRNGK---------------KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR   93 (257)
T ss_pred             cceEEecceEEEECCE---------------eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee
Confidence            4579999999999764               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEc
Q 010435          484 SIRSSVSMTNIQKSIGVCP  502 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cp  502 (510)
                      ...+..-..++|++||+|.
T Consensus        94 ~~G~~~~~~elrk~IG~vS  112 (257)
T COG1119          94 RFGKGETIFELRKRIGLVS  112 (257)
T ss_pred             eccCCcchHHHHHHhCccC
Confidence            8864222389999999985

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=2.3e-15  Score=169.78  Aligned_cols=91  Identities=27%  Similarity=0.507  Sum_probs=84.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++|++++|+.+            +++.+++|+||+|++||+++|+|||||||||++++|.|++.|++|+|+|+|.
T Consensus       348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~  415 (1228)
T KOG0055|consen  348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGE  415 (1228)
T ss_pred             ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCc
Confidence            4579999999999865            3568999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+++ .+.+.+|++||+|.|+++|
T Consensus       416 di~~-~~~~~lr~~iglV~QePvl  438 (1228)
T KOG0055|consen  416 DIRN-LNLKWLRSQIGLVSQEPVL  438 (1228)
T ss_pred             cchh-cchHHHHhhcCeeeechhh
Confidence            9984 6788999999999999887

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.58  E-value=4.7e-15  Score=162.74  Aligned_cols=89  Identities=19%  Similarity=0.332  Sum_probs=79.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++++++.|+...             ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       312 ~~I~~~~v~~~y~~~~-------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~  378 (569)
T PRK10789        312 GELDVNIRQFTYPQTD-------------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP  378 (569)
T ss_pred             CcEEEEEEEEECCCCC-------------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE
Confidence            3589999999996431             258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+.+|+.+|||||++.|
T Consensus       379 ~~~-~~~~~~~~~i~~v~q~~~l  400 (569)
T PRK10789        379 LTK-LQLDSWRSRLAVVSQTPFL  400 (569)
T ss_pred             Hhh-CCHHHHHhheEEEccCCee
Confidence            863 4677889999999998754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.58  E-value=4.8e-15  Score=142.37  Aligned_cols=80  Identities=23%  Similarity=0.446  Sum_probs=67.2

Q ss_pred             eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc
Q 010435          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV  489 (510)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~  489 (510)
                      -+|+|.|++.               . + |+||++++ |+++|+|+||||||||+++|+|+++|++|++.++|.++.+..
T Consensus         4 ~~l~~~~~~~---------------~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~   65 (214)
T cd03297           4 VDIEKRLPDF---------------T-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR   65 (214)
T ss_pred             eeeeEecCCe---------------e-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence            4899999642               2 3 99999999 999999999999999999999999999999999999874211


Q ss_pred             ---cHHHhhccEEEEccCCCc
Q 010435          490 ---SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       490 ---~~~~~r~~iG~cpQ~~~L  507 (510)
                         +....++.+||+||...+
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~   86 (214)
T cd03297          66 KKINLPPQQRKIGLVFQQYAL   86 (214)
T ss_pred             chhhhhhHhhcEEEEecCCcc
Confidence               234567899999998644

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.57  E-value=4.9e-15  Score=160.59  Aligned_cols=83  Identities=16%  Similarity=0.415  Sum_probs=72.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|+                 .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.+
T Consensus       264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~  326 (510)
T PRK09700        264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD  326 (510)
T ss_pred             cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence            4699999998651                 38999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhccEEEEccC
Q 010435          485 IRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      +......+..|+.+||+||.
T Consensus       327 ~~~~~~~~~~~~~i~~v~q~  346 (510)
T PRK09700        327 ISPRSPLDAVKKGMAYITES  346 (510)
T ss_pred             CCCCCHHHHHHCCcEEccCc
Confidence            84322234567789999996

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=4.8e-15  Score=140.61  Aligned_cols=79  Identities=25%  Similarity=0.387  Sum_probs=62.0

Q ss_pred             eEEEeeeEEEcCCCCC---------cccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          406 AVQIRGLVKTFPGTRK---------IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~---------~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      .|+++||+|.|+-...         .+.+...++...+.||+|+||++++||.+||+|+||||||||+++|+|.++||+|
T Consensus         3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134           3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            5777888888754310         0000001234567899999999999999999999999999999999999999999


Q ss_pred             eEEEcCee
Q 010435          477 DALIYGFS  484 (510)
Q Consensus       477 ~i~i~g~~  484 (510)
                      +|.++|.-
T Consensus        83 ~v~v~G~v   90 (249)
T COG1134          83 KVKVTGKV   90 (249)
T ss_pred             eEEEcceE
Confidence            99999963

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.57  E-value=6.8e-15  Score=162.17  Aligned_cols=88  Identities=26%  Similarity=0.408  Sum_probs=79.7

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.              .+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       333 ~~I~~~~vsf~y~~~~--------------~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~  398 (588)
T PRK13657        333 GAVEFDDVSFSYDNSR--------------QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD  398 (588)
T ss_pred             CeEEEEEEEEEeCCCC--------------ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence            3699999999996421              48999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|++++|+||.+.|
T Consensus       399 i~~-~~~~~~r~~i~~v~Q~~~l  420 (588)
T PRK13657        399 IRT-VTRASLRRNIAVVFQDAGL  420 (588)
T ss_pred             hhh-CCHHHHHhheEEEecCccc
Confidence            974 5678899999999998754

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.57  E-value=6.9e-15  Score=161.80  Aligned_cols=88  Identities=30%  Similarity=0.391  Sum_probs=78.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++++              .+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       333 ~~i~~~~v~~~y~~~~--------------~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  398 (585)
T TIGR01192       333 GAVEFRHITFEFANSS--------------QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID  398 (585)
T ss_pred             CeEEEEEEEEECCCCC--------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE
Confidence            3599999999996421              48999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+..|+.+|||||+..|
T Consensus       399 ~~~-~~~~~~~~~i~~v~q~~~l  420 (585)
T TIGR01192       399 INT-VTRESLRKSIATVFQDAGL  420 (585)
T ss_pred             hhh-CCHHHHHhheEEEccCCcc
Confidence            863 4567889999999998754

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.57  E-value=5.6e-15  Score=162.14  Aligned_cols=88  Identities=28%  Similarity=0.542  Sum_probs=80.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++              +++++|+||++++||.+||+|||||||||+++.|.|+++|++|+|.+||.|
T Consensus       327 ~~I~f~~vsf~y~~~--------------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d  392 (567)
T COG1132         327 GSIEFENVSFSYPGK--------------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID  392 (567)
T ss_pred             CeEEEEEEEEEcCCC--------------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence            459999999999742              159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+.+|+++|++||+..|
T Consensus       393 I~~-i~~~~lr~~I~~V~Qd~~L  414 (567)
T COG1132         393 IRD-ISLDSLRKRIGIVSQDPLL  414 (567)
T ss_pred             hhh-cCHHHHHHhccEEccccee
Confidence            974 6788999999999998865

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.57  E-value=4.3e-15  Score=160.24  Aligned_cols=84  Identities=20%  Similarity=0.248  Sum_probs=73.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~   67 (490)
T PRK10938          3 SLQISQGTFRLSDT---------------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI   67 (490)
T ss_pred             eEEEEeEEEEcCCe---------------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence            48899999999642               499999999999999999999999999999999999999999999999876


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .. .+..+.++.+|++||..
T Consensus        68 ~~-~~~~~~~~~i~~~~q~~   86 (490)
T PRK10938         68 TR-LSFEQLQKLVSDEWQRN   86 (490)
T ss_pred             cc-CCHHHHHHHhceeccCc
Confidence            42 23344567799999974

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.57  E-value=2.9e-15  Score=136.73  Aligned_cols=86  Identities=29%  Similarity=0.424  Sum_probs=77.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC-e
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-F  483 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g-~  483 (510)
                      ..+.+++++..|++-               +|++++||.+.+||.-+|+|||||||||+|..|+|-.+|+.|+++++| .
T Consensus         4 ~iL~~~~vsVsF~GF---------------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~   68 (249)
T COG4674           4 IILYLDGVSVSFGGF---------------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT   68 (249)
T ss_pred             ceEEEeceEEEEcce---------------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCch
Confidence            468999999999763               699999999999999999999999999999999999999999999999 8


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      |+....+.+..|..||--+|.+
T Consensus        69 dl~~~~e~~IAr~GIGRKFQ~P   90 (249)
T COG4674          69 DLTKLPEHRIARAGIGRKFQKP   90 (249)
T ss_pred             hhccCCHHHHHHhccCccccCC
Confidence            8876556666788888888965

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.56  E-value=9.2e-15  Score=150.80  Aligned_cols=83  Identities=17%  Similarity=0.341  Sum_probs=68.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++ ||+|.|++.                .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~-~l~k~~~~~----------------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~   63 (352)
T PRK11144          2 LEL-NFKQQLGDL----------------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF   63 (352)
T ss_pred             eEE-EEEEEeCCE----------------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            455 899999531                23 899999999999999999999999999999999999999999999874


Q ss_pred             Ccc---cHHHhhccEEEEccCCCc
Q 010435          487 SSV---SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~---~~~~~r~~iG~cpQ~~~L  507 (510)
                      +..   +....++.+|||||...+
T Consensus        64 ~~~~~~~~~~~~~~i~~v~q~~~l   87 (352)
T PRK11144         64 DAEKGICLPPEKRRIGYVFQDARL   87 (352)
T ss_pred             ccccccccchhhCCEEEEcCCccc
Confidence            211   133457899999998654

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.56  E-value=6.5e-15  Score=161.84  Aligned_cols=89  Identities=18%  Similarity=0.403  Sum_probs=80.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.             ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       329 ~~i~~~~v~f~y~~~~-------------~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~  395 (571)
T TIGR02203       329 GDVEFRNVTFRYPGRD-------------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD  395 (571)
T ss_pred             CeEEEEEEEEEcCCCC-------------CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence            3599999999996531             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.++.|++++||||++.|
T Consensus       396 i~~-~~~~~~~~~i~~v~Q~~~l  417 (571)
T TIGR02203       396 LAD-YTLASLRRQVALVSQDVVL  417 (571)
T ss_pred             HHh-cCHHHHHhhceEEccCccc
Confidence            863 5678889999999998865

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.56  E-value=7.8e-15  Score=176.37  Aligned_cols=89  Identities=22%  Similarity=0.438  Sum_probs=81.2

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..|+++|++++|++..             .++|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus      1236 g~I~f~nVsf~Y~~~~-------------~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~d 1302 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPEL-------------PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD 1302 (1622)
T ss_pred             CcEEEEEEEEEeCCCC-------------CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEe
Confidence            4699999999996431             159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|++||++.|
T Consensus      1303 I~~-i~l~~LR~~IsiVpQdp~L 1324 (1622)
T PLN03130       1303 ISK-FGLMDLRKVLGIIPQAPVL 1324 (1622)
T ss_pred             ccc-CCHHHHHhccEEECCCCcc
Confidence            974 5788999999999999876

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.56  E-value=7.8e-15  Score=151.47  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=67.3

Q ss_pred             eeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc-
Q 010435          411 GLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV-  489 (510)
Q Consensus       411 ~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~-  489 (510)
                      ||+|.|++.                .+ ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... 
T Consensus         4 ~l~~~~~~~----------------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~   66 (354)
T TIGR02142         4 RFSKRLGDF----------------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK   66 (354)
T ss_pred             EEEEEECCE----------------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc
Confidence            788999531                35 899999999999999999999999999999999999999999999884211 


Q ss_pred             --cHHHhhccEEEEccCCCc
Q 010435          490 --SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       490 --~~~~~r~~iG~cpQ~~~L  507 (510)
                        .....++.+||+||+..+
T Consensus        67 ~~~~~~~~~~i~~v~q~~~l   86 (354)
T TIGR02142        67 GIFLPPEKRRIGYVFQEARL   86 (354)
T ss_pred             ccccchhhCCeEEEecCCcc
Confidence              123457889999998654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.56  E-value=9.7e-15  Score=154.05  Aligned_cols=98  Identities=17%  Similarity=0.345  Sum_probs=80.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .+.++++||+|.|..+..   .+ .+++++++||+|+||++++||++||+|++||||||+.++|+|+.+|++|++.++|.
T Consensus       278 ~~ll~V~~l~k~y~~~~~---~~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~  353 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKG---LF-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ  353 (539)
T ss_pred             CceeEeeeeeeeeccccc---cc-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence            567999999999975421   11 12245678999999999999999999999999999999999999999999999998


Q ss_pred             ecCC-cccHHHhhccEEEEccCC
Q 010435          484 SIRS-SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~-~~~~~~~r~~iG~cpQ~~  505 (510)
                      +..- ..+..+.|+++-+++|+.
T Consensus       354 ~~~~~~~~~~~~r~~~QmvFQdp  376 (539)
T COG1123         354 DLDLTGGELRRLRRRIQMVFQDP  376 (539)
T ss_pred             ccccccchhhhhhhheEEEEeCc
Confidence            7311 234566788999999976

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.2e-14  Score=160.92  Aligned_cols=97  Identities=24%  Similarity=0.369  Sum_probs=76.5

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|+.+...  .  .++++.+.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus       312 ~~L~~~~l~~~y~~~~~~--~--~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~  387 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGL--L--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR  387 (623)
T ss_pred             ceEEEeeeEEEEcCCCcc--c--cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence            469999999999632100  0  000112369999999999999999999999999999999999999999999999998


Q ss_pred             cCCcc--cHHHhhccEEEEccCC
Q 010435          485 IRSSV--SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~--~~~~~r~~iG~cpQ~~  505 (510)
                      +....  +....|+.+||+||+.
T Consensus       388 i~~~~~~~~~~~~~~i~~v~Q~~  410 (623)
T PRK10261        388 IDTLSPGKLQALRRDIQFIFQDP  410 (623)
T ss_pred             CCcCCHHHHHHhcCCeEEEecCc
Confidence            85321  2334678899999975

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.56  E-value=6.9e-15  Score=159.06  Aligned_cols=89  Identities=19%  Similarity=0.274  Sum_probs=74.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEEEcCe
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGF  483 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~i~g~  483 (510)
                      ..++++|+++.|++..            ...+++++||++++||++||+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus       256 ~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~  323 (500)
T TIGR02633       256 VILEARNLTCWDVINP------------HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGK  323 (500)
T ss_pred             ceEEEeCCcccccccc------------cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCE
Confidence            3689999999984210            11589999999999999999999999999999999999985 8999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++......+..|+++||+||..
T Consensus       324 ~~~~~~~~~~~~~~i~~v~q~~  345 (500)
T TIGR02633       324 PVDIRNPAQAIRAGIAMVPEDR  345 (500)
T ss_pred             ECCCCCHHHHHhCCCEEcCcch
Confidence            8843223355678999999983

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.55  E-value=8e-15  Score=158.13  Aligned_cols=87  Identities=24%  Similarity=0.386  Sum_probs=73.9

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEEEcC
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYG  482 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~i~g  482 (510)
                      .+.++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|+++|
T Consensus       258 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g  322 (490)
T PRK10938        258 EPRIVLNNGVVSYNDR---------------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG  322 (490)
T ss_pred             CceEEEeceEEEECCe---------------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec
Confidence            4579999999999542               599999999999999999999999999999999999876 799999999


Q ss_pred             eecCCcccHHHhhccEEEEccCC
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .++.+.......|+.+||+||..
T Consensus       323 ~~~~~~~~~~~~~~~i~~v~q~~  345 (490)
T PRK10938        323 RRRGSGETIWDIKKHIGYVSSSL  345 (490)
T ss_pred             ccCCCCCCHHHHHhhceEECHHH
Confidence            87632223345678899999964

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=8.3e-15  Score=158.58  Aligned_cols=89  Identities=21%  Similarity=0.390  Sum_probs=74.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-CCcceEEEcCe
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIYGF  483 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-pt~G~i~i~g~  483 (510)
                      ..++++|++|.|+...            .+.+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.
T Consensus       258 ~~l~~~~l~~~~~~~~------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~  325 (506)
T PRK13549        258 VILEVRNLTAWDPVNP------------HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGK  325 (506)
T ss_pred             ceEEEecCcccccccc------------ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCE
Confidence            3689999999994310            1258999999999999999999999999999999999998 59999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++......+..++.+||+||..
T Consensus       326 ~~~~~~~~~~~~~~i~~v~q~~  347 (506)
T PRK13549        326 PVKIRNPQQAIAQGIAMVPEDR  347 (506)
T ss_pred             ECCCCCHHHHHHCCCEEeCcch
Confidence            8843222345677899999973

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.55  E-value=1.2e-14  Score=159.14  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++...          .+..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus       336 ~~i~~~~v~f~y~~~~~----------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~  405 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEG----------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA  405 (555)
T ss_pred             ceEEEEEEEEEeCCCCC----------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence            46999999999965310          01258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.++.|+.+|+++|++.|
T Consensus       406 i~~-~~~~~~~~~i~~v~q~~~l  427 (555)
T TIGR01194       406 VSA-DSRDDYRDLFSAIFADFHL  427 (555)
T ss_pred             CCC-CCHHHHHhhCcEEccChhh
Confidence            974 4567889999999998743

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.55  E-value=8.4e-15  Score=131.08  Aligned_cols=94  Identities=20%  Similarity=0.410  Sum_probs=77.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .|++++++|+-+...           .+.+++++++|.|++||.++|+||+|+||||++-+|+|+..|++|+|.+.|+++
T Consensus         6 ii~~~~l~ktvg~~~-----------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L   74 (228)
T COG4181           6 IIEVHHLSKTVGQGE-----------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPL   74 (228)
T ss_pred             eeehhhhhhhhcCCC-----------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcch
Confidence            688999999987643           256899999999999999999999999999999999999999999999999998


Q ss_pred             CCcc--cHHHh-hccEEEEccCC-CccCC
Q 010435          486 RSSV--SMTNI-QKSIGVCPQVT-LFSYL  510 (510)
Q Consensus       486 ~~~~--~~~~~-r~~iG~cpQ~~-~L~~~  510 (510)
                      ....  ..... .+++|+|+|.- .+++|
T Consensus        75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~l  103 (228)
T COG4181          75 HKLDEDARAALRARHVGFVFQSFHLIPNL  103 (228)
T ss_pred             hhcCHHHHHHhhccceeEEEEeeeccccc
Confidence            5422  23334 46899999954 34443

>PLN03232 ABC transporter C family member; Provisional

Probab=99.55  E-value=9.8e-15  Score=175.18  Aligned_cols=89  Identities=16%  Similarity=0.340  Sum_probs=80.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..|+++|++++|++..             ..+++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus      1233 g~I~f~nVsf~Y~~~~-------------~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~d 1299 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGL-------------PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD 1299 (1495)
T ss_pred             CcEEEEEEEEEECCCC-------------CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEE
Confidence            3599999999995431             159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|++||++.|
T Consensus      1300 i~~-i~~~~lR~~i~iVpQdp~L 1321 (1495)
T PLN03232       1300 VAK-FGLTDLRRVLSIIPQSPVL 1321 (1495)
T ss_pred             hhh-CCHHHHHhhcEEECCCCee
Confidence            974 5678999999999999865

>PTZ00243 ABC transporter; Provisional

Probab=99.54  E-value=1.6e-14  Score=173.48  Aligned_cols=89  Identities=18%  Similarity=0.362  Sum_probs=81.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..|+++||+++|++..             ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus      1307 G~I~f~nVsf~Y~~~~-------------~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~d 1373 (1560)
T PTZ00243       1307 GSLVFEGVQMRYREGL-------------PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGRE 1373 (1560)
T ss_pred             CeEEEEEEEEEeCCCC-------------CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence            3599999999996531             159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+++|+++|++||++.|
T Consensus      1374 i~~-i~l~~LR~~I~iVpQdp~L 1395 (1560)
T PTZ00243       1374 IGA-YGLRELRRQFSMIPQDPVL 1395 (1560)
T ss_pred             ccc-CCHHHHHhcceEECCCCcc
Confidence            974 5788999999999999866

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.54  E-value=1.3e-14  Score=134.80  Aligned_cols=68  Identities=25%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc
Q 010435          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV  489 (510)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~  489 (510)
                      .|++|.|++.               .+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+     
T Consensus         4 ~~l~~~~~~~---------------~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----   62 (177)
T cd03222           4 PDCVKRYGVF---------------FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----   62 (177)
T ss_pred             CCeEEEECCE---------------EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----
Confidence            4788888542               578885 9999999999999999999999999999999999999999853     


Q ss_pred             cHHHhhccEEEEccCCC
Q 010435          490 SMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       490 ~~~~~r~~iG~cpQ~~~  506 (510)
                              +||+||...
T Consensus        63 --------i~~~~q~~~   71 (177)
T cd03222          63 --------PVYKPQYID   71 (177)
T ss_pred             --------EEEEcccCC
Confidence                    688888653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.53  E-value=1.7e-14  Score=173.34  Aligned_cols=89  Identities=20%  Similarity=0.338  Sum_probs=81.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++.+|+++.             ..+++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus      1283 g~I~f~nVsf~Y~~~~-------------~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDL-------------DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred             CcEEEEEEEEEeCCCC-------------cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence            4699999999996531             159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+.+|+++|++||++.|
T Consensus      1350 I~~-i~~~~LR~~i~iVpQdp~L 1371 (1522)
T TIGR00957      1350 IAK-IGLHDLRFKITIIPQDPVL 1371 (1522)
T ss_pred             ccc-cCHHHHHhcCeEECCCCcc
Confidence            974 5788999999999999865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.53  E-value=2.7e-14  Score=158.04  Aligned_cols=91  Identities=16%  Similarity=0.293  Sum_probs=73.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ++.++++||++.|+...           +..++++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus        10 ~~~l~v~~l~~~y~~~~-----------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~   78 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQ-----------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM   78 (623)
T ss_pred             CceEEEeceEEEecCCC-----------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCE
Confidence            45799999999996421           1236999999999999999999999999999999999999999999999987


Q ss_pred             ecCC------------cccHHHhh-ccEEEEccCC
Q 010435          484 SIRS------------SVSMTNIQ-KSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~------------~~~~~~~r-~~iG~cpQ~~  505 (510)
                      ++.+            ..+..+.| +.+||++|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~  113 (623)
T PRK10261         79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEP  113 (623)
T ss_pred             EeccccccccccccCCHHHHHHHhCCCEEEEEeCc
Confidence            5411            01122343 5799999975

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.53  E-value=1.4e-14  Score=142.40  Aligned_cols=69  Identities=23%  Similarity=0.413  Sum_probs=60.9

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +++++||++++||+++|+|+||||||||+++|+|+.++ +|+|.++|.++.. .+..+.++.+||+||.+.
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~   79 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEA-WSAAELARHRAYLSQQQT   79 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCc-CCHHHHhhheEEecccCc
Confidence            79999999999999999999999999999999999865 8999999999853 334566778999999763

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.53  E-value=1.8e-14  Score=139.31  Aligned_cols=76  Identities=26%  Similarity=0.410  Sum_probs=65.7

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|+.+..   .   ++...++||+||||+|++||++||+|.|||||||+-++|+|+++||+|+|+++|.+
T Consensus         3 ~ll~v~~l~k~f~~~~~---~---~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~   76 (268)
T COG4608           3 PLLEVKNLKKYFPVGKG---F---GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD   76 (268)
T ss_pred             ceEEEeccEEEEecccc---c---CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence            35899999999976421   0   12224689999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 010435          485 IR  486 (510)
Q Consensus       485 i~  486 (510)
                      +.
T Consensus        77 i~   78 (268)
T COG4608          77 IT   78 (268)
T ss_pred             hh
Confidence            74

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.53  E-value=2.4e-14  Score=155.77  Aligned_cols=89  Identities=19%  Similarity=0.332  Sum_probs=73.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i  480 (510)
                      .+++++++|.|++..           +.+.+++++||++++||++||+|+||||||||+++|+|+++|     ++|+|.+
T Consensus         5 ~l~~~~l~~~~~~~~-----------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   73 (529)
T PRK15134          5 LLAIENLSVAFRQQQ-----------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF   73 (529)
T ss_pred             eEEEeceEEEecCCC-----------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE
Confidence            589999999996310           012699999999999999999999999999999999999987     7999999


Q ss_pred             cCeecCCcc--cHHHhh-ccEEEEccCC
Q 010435          481 YGFSIRSSV--SMTNIQ-KSIGVCPQVT  505 (510)
Q Consensus       481 ~g~~i~~~~--~~~~~r-~~iG~cpQ~~  505 (510)
                      +|.++....  +....| +.+||+||+.
T Consensus        74 ~g~~i~~~~~~~~~~~~~~~ig~v~Q~~  101 (529)
T PRK15134         74 HGESLLHASEQTLRGVRGNKIAMIFQEP  101 (529)
T ss_pred             CCEecccCCHHHHHHHhcCceEEEecCc
Confidence            999985311  122334 5899999975

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.52  E-value=1.6e-14  Score=140.42  Aligned_cols=67  Identities=22%  Similarity=0.428  Sum_probs=59.6

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC----CcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p----t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +++|+||++++||+++|+|+||||||||+++|+|+.+|    ++|+|+++|.++..   .+..++.+||+||+.
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~---~~~~~~~i~~~~q~~   71 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP---LSIRGRHIATIMQNP   71 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh---hhhhhheeEEEecCc
Confidence            57899999999999999999999999999999999999    89999999998842   223346899999986

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.52  E-value=7e-15  Score=131.18  Aligned_cols=72  Identities=17%  Similarity=0.430  Sum_probs=67.7

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.|+++||.+.+||..+|.||+||||||++|+++-+.+||+|++++.|.++.+ ...+..|+++.||-|.+.|
T Consensus        17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~-~~pea~Rq~VsY~~Q~paL   88 (223)
T COG4619          17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST-LKPEAYRQQVSYCAQTPAL   88 (223)
T ss_pred             eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc-cChHHHHHHHHHHHcCccc
Confidence            59999999999999999999999999999999999999999999999999974 5688999999999997755

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.52  E-value=1.7e-14  Score=171.87  Aligned_cols=89  Identities=19%  Similarity=0.387  Sum_probs=78.4

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE-cCee
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI-YGFS  484 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i-~g~~  484 (510)
                      .++++||++.|+++.            ++++++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.+ +|.+
T Consensus       382 ~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~  449 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK------------DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN  449 (1466)
T ss_pred             cEEEEEEEEEcCCCC------------CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc
Confidence            699999999997531            236999999999999999999999999999999999999999999999 5688


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+.+|+++|||||++.|
T Consensus       450 i~~-~~~~~lr~~Ig~V~Q~~~L  471 (1466)
T PTZ00265        450 LKD-INLKWWRSKIGVVSQDPLL  471 (1466)
T ss_pred             hhh-CCHHHHHHhccEecccccc
Confidence            853 4567789999999998765

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.52  E-value=1.9e-14  Score=162.44  Aligned_cols=91  Identities=25%  Similarity=0.450  Sum_probs=84.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..|+++||++.|+.+            |++.+++|+||+|++||.++|+||+||||||.+.+|-+++.|++|.|.|||+
T Consensus       985 ~G~I~~~~V~F~YPsR------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~ 1052 (1228)
T KOG0055|consen  985 KGDIEFRNVSFAYPTR------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV 1052 (1228)
T ss_pred             eeEEEEeeeEeeCCCC------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc
Confidence            3469999999999864            4568999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+++ .+.+.+|++||.|.|+++|
T Consensus      1053 dik~-lnl~~LR~~i~lVsQEP~L 1075 (1228)
T KOG0055|consen 1053 DIKD-LNLKWLRKQIGLVSQEPVL 1075 (1228)
T ss_pred             cccc-CCHHHHHHhcceeccCchh
Confidence            9984 7899999999999999987

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.51  E-value=2.7e-14  Score=170.23  Aligned_cols=90  Identities=17%  Similarity=0.287  Sum_probs=81.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----------
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----------  473 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----------  473 (510)
                      ..|+++||++.|+++.            ++++++|+||++++||++||+|++||||||++++|.|+++|           
T Consensus      1164 g~I~f~nVsF~Y~~~~------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265       1164 GKIEIMDVNFRYISRP------------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231 (1466)
T ss_pred             ceEEEEEEEEECCCCC------------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccc
Confidence            4699999999997531            22599999999999999999999999999999999999998           


Q ss_pred             -------------------------------------------CcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          474 -------------------------------------------TGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       474 -------------------------------------------t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                                                 ++|+|.++|.|+++ .+.+.+|+++|||||++.|
T Consensus      1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~-~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265       1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD-YNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh-CCHHHHHhhccEeCCCCcc
Confidence                                                       69999999999974 5788999999999999866

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.51  E-value=3.3e-14  Score=155.51  Aligned_cols=78  Identities=22%  Similarity=0.308  Sum_probs=68.3

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ++.++++||+|.|++.              +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++ 
T Consensus         4 ~~~l~i~~l~~~y~~~--------------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-   68 (556)
T PRK11819          4 QYIYTMNRVSKVVPPK--------------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-   68 (556)
T ss_pred             cEEEEEeeEEEEeCCC--------------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-
Confidence            3479999999999621              1599999999999999999999999999999999999999999999964 


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                 +..+|||||+..+
T Consensus        69 -----------~~~i~~v~Q~~~~   81 (556)
T PRK11819         69 -----------GIKVGYLPQEPQL   81 (556)
T ss_pred             -----------CCEEEEEecCCCC
Confidence                       1369999998644

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.51  E-value=4.5e-14  Score=153.44  Aligned_cols=93  Identities=19%  Similarity=0.344  Sum_probs=72.9

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc-C
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY-G  482 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~-g  482 (510)
                      ...++++|++|.|++..          .+.+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++ |
T Consensus       277 ~~~l~~~~l~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g  346 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVD----------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVG  346 (520)
T ss_pred             CceEEEeccEEEeccCC----------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecC
Confidence            34699999999995310          001259999999999999999999999999999999999999999999996 6


Q ss_pred             ee---cCCcc--cHHHhhccEEEEccCCC
Q 010435          483 FS---IRSSV--SMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       483 ~~---i~~~~--~~~~~r~~iG~cpQ~~~  506 (510)
                      .+   +....  +....|+++||+||+..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~  375 (520)
T TIGR03269       347 DEWVDMTKPGPDGRGRAKRYIGILHQEYD  375 (520)
T ss_pred             CccccccccchhhHHHHhhhEEEEccCcc
Confidence            42   22110  12345678999999854

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=4.4e-14  Score=132.54  Aligned_cols=87  Identities=24%  Similarity=0.378  Sum_probs=76.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCe
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF  483 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~  483 (510)
                      .++++||+..-.++              +.+|+++||+|++||+.+|+||||||||||.+.|+|..  .+|+|+|.++|.
T Consensus         3 ~L~I~dLhv~v~~~--------------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge   68 (251)
T COG0396           3 MLEIKDLHVEVEGK--------------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE   68 (251)
T ss_pred             eeEEeeeEEEecCc--------------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc
Confidence            47889998777542              25999999999999999999999999999999999975  889999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ||.+...-+++|..|.+-+|.+.
T Consensus        69 dI~~l~~~ERAr~GifLafQ~P~   91 (251)
T COG0396          69 DILELSPDERARAGIFLAFQYPV   91 (251)
T ss_pred             ccccCCHhHHHhcCCEEeecCCc
Confidence            99765556778999999999874

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=2.6e-14  Score=130.52  Aligned_cols=82  Identities=27%  Similarity=0.468  Sum_probs=71.0

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +.+++++-.|++.             +..|++|+|+++.+||.+++|||+||||||++|+++|+.+|+.|+|.++|..|.
T Consensus         4 l~~~~~sl~y~g~-------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~   70 (259)
T COG4525           4 LNVSHLSLSYEGK-------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE   70 (259)
T ss_pred             eehhheEEecCCc-------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence            5678899999764             236999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..      -..=|+|+|.+.|
T Consensus        71 gP------gaergvVFQ~~~L   85 (259)
T COG4525          71 GP------GAERGVVFQNEAL   85 (259)
T ss_pred             CC------CccceeEeccCcc
Confidence            31      1223999999875

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.50  E-value=3.6e-14  Score=153.05  Aligned_cols=83  Identities=19%  Similarity=0.327  Sum_probs=71.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.+  +               .+++++||++++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus       249 ~~i~~~~l~~~~--~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~  311 (491)
T PRK10982        249 VILEVRNLTSLR--Q---------------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK  311 (491)
T ss_pred             cEEEEeCccccc--C---------------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEE
Confidence            468999998864  1               48999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhccEEEEccC
Q 010435          485 IRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      +......+..++.+||+||.
T Consensus       312 i~~~~~~~~~~~~i~~~~q~  331 (491)
T PRK10982        312 INNHNANEAINHGFALVTEE  331 (491)
T ss_pred             CCCCCHHHHHHCCCEEcCCc
Confidence            85322234457789999996

>PLN03211 ABC transporter G-25; Provisional

Probab=99.49  E-value=3.2e-14  Score=157.72  Aligned_cols=69  Identities=23%  Similarity=0.366  Sum_probs=62.1

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC--cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt--~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.+++|+|+++++||++||+||||||||||+++|+|..+|+  +|+|.++|.++.     ++.++++|||+|++.+
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~-----~~~~~~i~yv~Q~~~l  151 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT-----KQILKRTGFVTQDDIL  151 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc-----hhhccceEEECccccc
Confidence            46999999999999999999999999999999999999886  899999999873     1346779999999865

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=5.3e-14  Score=153.19  Aligned_cols=73  Identities=19%  Similarity=0.306  Sum_probs=65.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|+++               ++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.   
T Consensus         2 l~i~~ls~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---   63 (530)
T PRK15064          2 LSTANITMQFGAK---------------PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---   63 (530)
T ss_pred             EEEEEEEEEeCCc---------------EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---
Confidence            6899999999542               5999999999999999999999999999999999999999999999862   


Q ss_pred             CcccHHHhhccEEEEccCCC
Q 010435          487 SSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~  506 (510)
                               +.+||+||+..
T Consensus        64 ---------~~i~~~~q~~~   74 (530)
T PRK15064         64 ---------ERLGKLRQDQF   74 (530)
T ss_pred             ---------CEEEEEeccCC
Confidence                     35899999753

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.49  E-value=5.4e-14  Score=153.08  Aligned_cols=96  Identities=19%  Similarity=0.258  Sum_probs=73.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++....    ..++.+.+.+++++||++++||++||+|+||||||||+++|+|+.+ ++|+|+++|.+
T Consensus       274 ~~l~~~~l~~~~~~~~~~----~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~  348 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGI----LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQP  348 (529)
T ss_pred             CcccccCcEEEeecCccc----cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEE
Confidence            468999999999531000    0000012369999999999999999999999999999999999985 89999999998


Q ss_pred             cCCcc--cHHHhhccEEEEccCC
Q 010435          485 IRSSV--SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~--~~~~~r~~iG~cpQ~~  505 (510)
                      +....  +....|+.+||+||+.
T Consensus       349 i~~~~~~~~~~~~~~i~~v~q~~  371 (529)
T PRK15134        349 LHNLNRRQLLPVRHRIQVVFQDP  371 (529)
T ss_pred             ccccchhhHHHhhhceEEEEeCc
Confidence            84211  2233477899999985

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.49  E-value=9.5e-14  Score=138.78  Aligned_cols=73  Identities=21%  Similarity=0.359  Sum_probs=64.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++++++.  +.               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++| 
T Consensus        37 ~~~l~i~nls~~--~~---------------~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-   98 (282)
T cd03291          37 DNNLFFSNLCLV--GA---------------PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-   98 (282)
T ss_pred             CCeEEEEEEEEe--cc---------------cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence            457999999984  11               499999999999999999999999999999999999999999999987 


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                   .+||+||...+
T Consensus        99 -------------~i~yv~q~~~l  109 (282)
T cd03291          99 -------------RISFSSQFSWI  109 (282)
T ss_pred             -------------EEEEEeCcccc
Confidence                         28889887643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.49  E-value=5.5e-14  Score=152.71  Aligned_cols=60  Identities=27%  Similarity=0.560  Sum_probs=55.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEc
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIY  481 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~  481 (510)
                      ++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.  +|++|+|.++
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~   62 (520)
T TIGR03269         1 IEVKNLTKKFDGK---------------EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH   62 (520)
T ss_pred             CEEEEEEEEECCe---------------EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence            4689999999532               5999999999999999999999999999999999997  7999999997

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.49  E-value=1.7e-14  Score=133.74  Aligned_cols=88  Identities=26%  Similarity=0.375  Sum_probs=70.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +.+.++.|.|.+...          .+++|++++||+|++||.+.++|+|||||||+++.|+|.++||+|+|.|+|.||.
T Consensus         2 i~~~~~~~~f~~g~~----------~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVt   71 (263)
T COG1101           2 ISLSNATKTFFKGTP----------LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT   71 (263)
T ss_pred             cccccceeeecCCCh----------hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecc
Confidence            356677788855421          2457999999999999999999999999999999999999999999999999996


Q ss_pred             CcccHHHhhccEEEEccCC
Q 010435          487 SSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~  505 (510)
                      . ....+--..++-|+|++
T Consensus        72 k-~~~~~RA~~larVfQdp   89 (263)
T COG1101          72 K-KSVAKRANLLARVFQDP   89 (263)
T ss_pred             c-CCHHHHhhHHHHHhcch
Confidence            4 33333334456667764

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=99.48  E-value=2.1e-14  Score=145.59  Aligned_cols=271  Identities=22%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             eeecCCHHHHHHHHHcCCCccceEEEEeCCCCC-------eeEEEEEEcccccCCCCCCCCCccchhhHHHHHHHHHHHH
Q 010435           14 VMSFRTAAEVDDWLYSNPMRCPGALHFVDRNAT-------TISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIAR   86 (510)
Q Consensus        14 ~~~f~s~~~l~~~~~~~~~~~~~av~F~~~~~~-------~~~Y~i~~n~~~~~~~~~~~~~~~~~~~~lQ~~id~ai~~   86 (510)
                      ...++|++++++.+.++  +..+++++++....       ..++++..|.....           ....+|..+++ +.+
T Consensus        60 ~~~~~~~~~~~~~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~-l~~  125 (344)
T PF12698_consen   60 VVEYDSEEEAKDALKNG--KIDAIIVIPKNFSQDLLSSGESPNITVYINSSNPH-----------SSQIIQNALSS-LLQ  125 (344)
T ss_dssp             EEECS-HHHHHHHHHHH--T-SEEEEE-TTCCCHCH-TT--ECCEEEESSSSHH-----------HHHHHHHHHHH-HHH
T ss_pred             eeeeCCHHHHHHHHHhC--CCcEEEEcCccccccccccCCcceEEEEeecccch-----------hhhhhhccccc-cch
Confidence            56899999999988654  34467777655432       23344444432211           12345555665 555


Q ss_pred             HHhCCC-------ccceeeeeeccCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCCChhHH
Q 010435           87 SLVGDP-------NFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAY  159 (510)
Q Consensus        87 ~~~~~~-------~~~~~v~~~~~p~p~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~iV~EKe~~lke~m~~mGl~~~~y  159 (510)
                      ......       ....++..+..|..... .+....+.+.+.++..++++......+++|||+|+++.|++||++...|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~  204 (344)
T PF12698_consen  126 QLNASSEGKSAIQSSNSPIPVESIPLSNPS-SSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSY  204 (344)
T ss_dssp             HHHHCCCGCCCCHHHT--EEEEEEEECCCH-HHCHTT-------------------------------------------
T ss_pred             hhhhhhhhhhhhcccccccccccccccccc-ccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHH
Confidence            433211       01122333333322111 2222223332332223333444456789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010435          160 WLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFL  239 (510)
Q Consensus       160 Wls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~~S~fF~~~~~a~~~~~~~~~~~~~  239 (510)
                      |+++++.+++..++.+++++++  +++...+...+...+++++++|+++.+++++++|.+|++++.+..++.++.+....
T Consensus       205 ~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~  282 (344)
T PF12698_consen  205 WLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSF  282 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999988887655543  34321233336667788899999999999999999999998876544333321111


Q ss_pred             HHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCccccccCCCcCCCCCCcccchHHHHHHHHHHHH
Q 010435          240 TQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATF  319 (510)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~  319 (510)
                      ....   .++ .+..+..++.+.+++|++.+..++..+....         |.              .....+.++++.+
T Consensus       283 ~~~~---~~~-~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~---------~~--------------~~~~~~~~l~~~~  335 (344)
T PF12698_consen  283 LSGG---FFP-LSSLPSFLQWISSFLPFYWFIQGLRNIIYGD---------WS--------------EIWISLIILLLFA  335 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH---HHh-HHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------HH--------------HHHHHHHHHHHHH
Confidence            1000   011 1123345667788999999888877664210         10              1112345677788


Q ss_pred             HHHHHHHHH
Q 010435          320 FVWFILAIY  328 (510)
Q Consensus       320 ~ly~lL~~y  328 (510)
                      ++|+++++|
T Consensus       336 ~v~~~l~~~  344 (344)
T PF12698_consen  336 VVYLLLAIL  344 (344)
T ss_dssp             ---------
T ss_pred             HHHHHHHhC
Confidence            889888876

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.48  E-value=6.7e-14  Score=153.07  Aligned_cols=77  Identities=22%  Similarity=0.311  Sum_probs=67.7

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|++.              +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.+++  
T Consensus         3 ~~i~~~nls~~~~~~--------------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--   66 (552)
T TIGR03719         3 YIYTMNRVSKVVPPK--------------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--   66 (552)
T ss_pred             EEEEEeeEEEecCCC--------------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--
Confidence            468999999999622              1599999999999999999999999999999999999999999999864  


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                ++.+||+||+..+
T Consensus        67 ----------~~~i~~v~Q~~~~   79 (552)
T TIGR03719        67 ----------GIKVGYLPQEPQL   79 (552)
T ss_pred             ----------CCEEEEEeccCCC
Confidence                      2469999998644

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.48  E-value=6.8e-14  Score=151.28  Aligned_cols=70  Identities=19%  Similarity=0.308  Sum_probs=62.0

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++......+..|+.+||+||..
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~  336 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR  336 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence            6999999999999999999999999999999999999999999999999853222234677899999983

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=8.7e-14  Score=151.49  Aligned_cols=74  Identities=26%  Similarity=0.335  Sum_probs=67.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|+++               .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. 
T Consensus       318 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-  381 (530)
T PRK15064        318 NALEVENLTKGFDNG---------------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-  381 (530)
T ss_pred             ceEEEEeeEEeeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-
Confidence            479999999999542               5899999999999999999999999999999999999999999999762 


Q ss_pred             cCCcccHHHhhccEEEEccCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                                 +.+||+||+.
T Consensus       382 -----------~~i~~~~q~~  391 (530)
T PRK15064        382 -----------ANIGYYAQDH  391 (530)
T ss_pred             -----------eEEEEEcccc
Confidence                       4699999974

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=3e-14  Score=147.82  Aligned_cols=86  Identities=27%  Similarity=0.471  Sum_probs=77.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++++|+++.             .+|++|+||++++||.++|+|++||||||++..|+|.++|++|+|..+|.++
T Consensus       336 ~l~~~~vsF~y~~~~-------------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~  402 (573)
T COG4987         336 ALELRNVSFTYPGQQ-------------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI  402 (573)
T ss_pred             eeeeccceeecCCCc-------------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence            799999999998753             2699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .. .+-+++|+.+++.+|..
T Consensus       403 ~~-l~~~~~~e~i~vl~Qr~  421 (573)
T COG4987         403 AS-LDEQALRETISVLTQRV  421 (573)
T ss_pred             hh-CChhhHHHHHhhhccch
Confidence            64 34456899999999965

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.47  E-value=1.9e-13  Score=151.96  Aligned_cols=90  Identities=17%  Similarity=0.395  Sum_probs=75.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++.+           +.+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++
T Consensus         4 ~l~~~nl~~~y~~~~-----------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i   72 (648)
T PRK10535          4 LLELKDIRRSYPSGE-----------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDV   72 (648)
T ss_pred             EEEEeeEEEEeCCCC-----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence            589999999996421           112599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHH---h-hccEEEEccCCCc
Q 010435          486 RSSVSMTN---I-QKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~---~-r~~iG~cpQ~~~L  507 (510)
                      .. ...++   . |+.+||+||...+
T Consensus        73 ~~-~~~~~~~~~~~~~i~~v~q~~~l   97 (648)
T PRK10535         73 AT-LDADALAQLRREHFGFIFQRYHL   97 (648)
T ss_pred             Cc-CCHHHHHHHHhccEEEEeCCccc
Confidence            53 22222   2 5789999997643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.47  E-value=1.4e-13  Score=165.13  Aligned_cols=88  Identities=28%  Similarity=0.451  Sum_probs=79.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..|+++||+++|++..             ..+|+|+||+|++||.+||+|++||||||++++|.|+++ ++|+|.|+|.|
T Consensus      1216 g~I~f~nVs~~Y~~~~-------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~d 1281 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAG-------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVS 1281 (1490)
T ss_pred             CeEEEEEEEEEeCCCC-------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEE
Confidence            4699999999996531             269999999999999999999999999999999999997 89999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+.+|++++++||++.|
T Consensus      1282 i~~-i~~~~lR~~is~IpQdp~L 1303 (1490)
T TIGR01271      1282 WNS-VTLQTWRKAFGVIPQKVFI 1303 (1490)
T ss_pred             ccc-CCHHHHHhceEEEeCCCcc
Confidence            973 5688999999999999865

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.47  E-value=9.5e-14  Score=150.19  Aligned_cols=71  Identities=23%  Similarity=0.348  Sum_probs=62.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|+++|.++......+..++.+||+||..
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~  337 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR  337 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence            38999999999999999999999999999999999999999999999998853223345678999999974

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.46  E-value=1e-13  Score=142.82  Aligned_cols=89  Identities=28%  Similarity=0.483  Sum_probs=79.9

Q ss_pred             CCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      .+..+.++++...=++.             +++.|+|+||++.+||.+|++||+|||||||.++|.|..+|++|.|.+||
T Consensus       331 P~g~L~Ve~l~~~PPg~-------------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDg  397 (580)
T COG4618         331 PQGALSVERLTAAPPGQ-------------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG  397 (580)
T ss_pred             CCceeeEeeeeecCCCC-------------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecc
Confidence            35679999998865543             23799999999999999999999999999999999999999999999999


Q ss_pred             eecCCcccHHHhhccEEEEccCC
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .|++ .++.++.-++|||.||+-
T Consensus       398 a~l~-qWd~e~lG~hiGYLPQdV  419 (580)
T COG4618         398 ADLR-QWDREQLGRHIGYLPQDV  419 (580)
T ss_pred             hhhh-cCCHHHhccccCcCcccc
Confidence            9997 588999999999999964

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.46  E-value=4.9e-14  Score=136.37  Aligned_cols=64  Identities=28%  Similarity=0.403  Sum_probs=58.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      +.++++++.|++.               ++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus        23 l~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   86 (224)
T cd03220          23 LGILGRKGEVGEF---------------WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS   86 (224)
T ss_pred             hhhhhhhhhcCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            5677888888542               699999999999999999999999999999999999999999999999876

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.46  E-value=1.5e-11  Score=139.43  Aligned_cols=315  Identities=20%  Similarity=0.229  Sum_probs=165.4

Q ss_pred             HHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccCChHHHHHHHHHHHHHHHHHHHH
Q 010435          137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMM-FQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (510)
Q Consensus       137 iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~-~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~  215 (510)
                      .|.+|++..      .=-.+|++=++..+.++..-++.+.+++++.+. .++. -....+...++++++...++..+-=+
T Consensus       519 pv~~Khr~~------~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~-~~A~rFF~~fL~lf~~~~~~s~lFr~  591 (1391)
T KOG0065|consen  519 PVFYKHRDL------SFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLK-RNAGRFFIQFLFLFLCQFCMSGLFRF  591 (1391)
T ss_pred             chHHHhhcc------cccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466665433      124569999999999999888876666554432 2211 11234556666667777777777677


Q ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHhhcCc-cCcccchhhhhhheecCh-HHHHHHHHHHHHhcCCCCCccccccC
Q 010435          216 FSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFP-YSDQFSNTYRTIWSLFPP-NLLAEALQLLSDATETPQDIGISWSR  293 (510)
Q Consensus       216 ~S~fF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~P~-~~~~~~~~~i~~~~~~~~~~g~~w~~  293 (510)
                      ++...++-..|...+.+..++.++   ..  ++. ...++....+|+..+.|. +++...+  +.+...      -+|..
T Consensus       592 ia~l~~t~~~An~~g~~~~L~i~m---~~--Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~--~NEF~~------~~~~c  658 (1391)
T KOG0065|consen  592 IASLSRTLSIANLIGGILLLVLFM---YG--GFVIPKKDMPPWFRWIAYINPLMYAFESLM--SNEFHG------RRWPC  658 (1391)
T ss_pred             HHHhcchHHHHhhHhHHHHHHHHH---Hc--ceeeeccccchHHHHHHHHCHHHHHHHHHH--Hhhhhc------ccCCC
Confidence            777777777777665443332111   00  111 224456677888777774 2232221  222211      11211


Q ss_pred             C---------C----cCC------C---------------CCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 010435          294 R---------A----ECA------P---------------NDTEC-VITINDIYIWLVATFFVWFILAIYLDNIIPNAAG  338 (510)
Q Consensus       294 ~---------~----~~~------~---------------~~~~~-~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g  338 (510)
                      .         .    .|.      .               ....+ =..++-++.+.++=.+++.+++-|++-...+   
T Consensus       659 ~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~---  735 (1391)
T KOG0065|consen  659 SPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKS---  735 (1391)
T ss_pred             CCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccc---
Confidence            1         0    010      0               00000 0234445566666667777777776522111   


Q ss_pred             CCcceeecccccCcCCCCCCCcccCccccccCCCCCCCCCCCCChhhHH--HHHHHHhhhhcCCCCCCceEEEeeeEEEc
Q 010435          339 VRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLE--EENMVKQQIRESIPDPNVAVQIRGLVKTF  416 (510)
Q Consensus       339 ~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~--e~~~~~~~~~~~~~~~~~~i~~~~l~k~y  416 (510)
                        +.-.- ++    +++.+.+.+..+      .....+    ..+|+.+  ++..+. ...+.....+....++|+.+.-
T Consensus       736 --~~~l~-~~----~~~~~~~~~~~~------~~~~~~----~~~~s~~~~~~~~~~-~~~~~~~~~~~V~~w~dl~~~~  797 (1391)
T KOG0065|consen  736 --GAILV-FK----KGKEKKKVKSAG------SSSEIE----KLDDSSHQEKNKMVL-PFTPLSLTFKDVFYWVDLPYEM  797 (1391)
T ss_pred             --cceee-ec----cchhhhcchhcc------cccccc----ccccccccccccccC-CCccccccccceEEEEeCCccc
Confidence              11000 00    000000000000      000000    0000000  000000 0000111123455666666555


Q ss_pred             CCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCeecCCcccHHHh
Q 010435          417 PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNI  494 (510)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~i~~~~~~~~~  494 (510)
                      +.+           .+.+..|+||+=-++||-.++|+|+|||||||||++|+|-..-  .+|+|.|+|++..    .+..
T Consensus       798 ~~q-----------G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~----q~tF  862 (1391)
T KOG0065|consen  798 PIQ-----------GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD----QETF  862 (1391)
T ss_pred             ccc-----------ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc----hhhh
Confidence            332           1233699999999999999999999999999999999996532  4699999999862    2577


Q ss_pred             hccEEEEccCCCc
Q 010435          495 QKSIGVCPQVTLF  507 (510)
Q Consensus       495 r~~iG~cpQ~~~L  507 (510)
                      +|.+|||-|.|+-
T Consensus       863 ~R~~GYvqQ~DiH  875 (1391)
T KOG0065|consen  863 ARVSGYVEQQDIH  875 (1391)
T ss_pred             ccccceeeccccc
Confidence            8999999999974

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.46  E-value=1.6e-13  Score=135.48  Aligned_cols=88  Identities=24%  Similarity=0.476  Sum_probs=73.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-C----CcceEEEc
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-V----TGGDALIY  481 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-p----t~G~i~i~  481 (510)
                      ++++||+..|....           +.++||+||||++++||++||+|.+|||||||.+.|.|+++ |    ++|+|.++
T Consensus         2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~   70 (316)
T COG0444           2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD   70 (316)
T ss_pred             ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEEC
Confidence            57899999996542           24579999999999999999999999999999999999998 4    57999999


Q ss_pred             CeecCCccc--HHHhh-ccEEEEccCC
Q 010435          482 GFSIRSSVS--MTNIQ-KSIGVCPQVT  505 (510)
Q Consensus       482 g~~i~~~~~--~~~~r-~~iG~cpQ~~  505 (510)
                      |.|+.+..+  ++++| +.|+++||..
T Consensus        71 g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          71 GKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             CcccccCCHHHHHhhcCceEEEEEcCc
Confidence            998854222  33444 5899999975

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.45  E-value=1.7e-13  Score=158.11  Aligned_cols=92  Identities=20%  Similarity=0.381  Sum_probs=84.3

Q ss_pred             CCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       402 ~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      +.+..|+++|++.+|+....             .+|+||||+|++||.+||+|.+||||||+++.|-++.+|++|+|.||
T Consensus      1134 P~~G~I~f~~~~~RYrp~lp-------------~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ID 1200 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLP-------------LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILID 1200 (1381)
T ss_pred             CCCCeEEEEEeEEEeCCCCc-------------chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEc
Confidence            34567999999999976422             69999999999999999999999999999999999999999999999


Q ss_pred             CeecCCcccHHHhhccEEEEccCCCc
Q 010435          482 GFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       482 g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |.||.+ -.+.+.|++++++||+++|
T Consensus      1201 gvdI~~-igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1201 GVDISK-IGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred             Ceeccc-ccHHHHHhcCeeeCCCCce
Confidence            999974 6799999999999999987

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.45  E-value=8.8e-14  Score=125.82  Aligned_cols=81  Identities=17%  Similarity=0.347  Sum_probs=69.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +.+++++..|+.                 .-=..+++|+.||+++|+||+||||||++|+++|+..|.+|+++|+|.|+.
T Consensus         2 l~L~~V~~~y~~-----------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t   64 (231)
T COG3840           2 LALDDVRFSYGH-----------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT   64 (231)
T ss_pred             ccccceEEeeCc-----------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC
Confidence            467788888964                 334578999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                         .....+|=+.+++|+|-|
T Consensus        65 ---~~~P~~RPVSmlFQEnNL   82 (231)
T COG3840          65 ---ASPPAERPVSMLFQENNL   82 (231)
T ss_pred             ---cCCcccCChhhhhhcccc
Confidence               334567889999997754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=1.5e-13  Score=152.46  Aligned_cols=62  Identities=23%  Similarity=0.238  Sum_probs=58.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ++++||+|.|+++               .+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus         2 i~i~nls~~~g~~---------------~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~   63 (638)
T PRK10636          2 IVFSSLQIRRGVR---------------VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN   63 (638)
T ss_pred             EEEEEEEEEeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence            6899999999643               5999999999999999999999999999999999999999999999874

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.44  E-value=1.6e-13  Score=133.40  Aligned_cols=65  Identities=25%  Similarity=0.430  Sum_probs=56.6

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++... .     ...||+||...+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~-----~~~~~v~q~~~l   65 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP-G-----PDRMVVFQNYSL   65 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-C-----hhheEEecCccc
Confidence            5789999999999999999999999999999999999999999999988421 1     124899998654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.44  E-value=2.2e-13  Score=135.05  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=63.2

Q ss_pred             ceEEEeeeEEEcCCCCC-cccccc----cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE
Q 010435          405 VAVQIRGLVKTFPGTRK-IGCCCK----CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~-~~~~~~----~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~  479 (510)
                      ..+.++||+|+|...+. .+.-..    .++...+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~   82 (264)
T PRK13546          3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD   82 (264)
T ss_pred             ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence            46899999999976321 000000    0122455799999999999999999999999999999999999999999999


Q ss_pred             EcCe
Q 010435          480 IYGF  483 (510)
Q Consensus       480 i~g~  483 (510)
                      ++|.
T Consensus        83 ~~g~   86 (264)
T PRK13546         83 RNGE   86 (264)
T ss_pred             ECCE
Confidence            9985

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.43  E-value=2.4e-13  Score=148.79  Aligned_cols=75  Identities=24%  Similarity=0.394  Sum_probs=66.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++++++.|+++               .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.+++ 
T Consensus       322 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-  385 (556)
T PRK11819        322 DKVIEAENLSKSFGDR---------------LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-  385 (556)
T ss_pred             CeEEEEEeEEEEECCe---------------eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence            3479999999999542               599999999999999999999999999999999999999999999843 


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++           .+||+||..
T Consensus       386 ~~-----------~i~~v~q~~  396 (556)
T PRK11819        386 TV-----------KLAYVDQSR  396 (556)
T ss_pred             ce-----------EEEEEeCch
Confidence            21           599999974

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.43  E-value=1.2e-13  Score=134.88  Aligned_cols=102  Identities=24%  Similarity=0.405  Sum_probs=80.1

Q ss_pred             ceEEEeeeEEEcCCCCC-------cccccc---cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435          405 VAVQIRGLVKTFPGTRK-------IGCCCK---CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~-------~~~~~~---~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      ..++++|++|.|+.+..       .| ..+   .++++-+..|+|+||+|++|||+.|.|-+|||||||++++.++++||
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G-~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept   81 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQG-KSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT   81 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcC-CcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC
Confidence            46899999999976421       00 000   03445567899999999999999999999999999999999999999


Q ss_pred             cceEEEcCeecCC--cccHHHh-hccEEEEccCCCc
Q 010435          475 GGDALIYGFSIRS--SVSMTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       475 ~G~i~i~g~~i~~--~~~~~~~-r~~iG~cpQ~~~L  507 (510)
                      +|+|.++|.|+..  ..++.+. |+++++|+|.-.|
T Consensus        82 ~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL  117 (386)
T COG4175          82 RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL  117 (386)
T ss_pred             CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence            9999999999853  2344455 4679999996544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.42  E-value=2.8e-13  Score=150.39  Aligned_cols=75  Identities=20%  Similarity=0.397  Sum_probs=66.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++||+|.|+++               .+++++||+|++||++||+|+||||||||+++|+|+.+|++|+|.+ |.
T Consensus       317 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~  380 (635)
T PRK11147        317 KIVFEMENVNYQIDGK---------------QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT  380 (635)
T ss_pred             CceEEEeeeEEEECCe---------------EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC
Confidence            3469999999999542               5999999999999999999999999999999999999999999998 53


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++           .+||++|+.
T Consensus       381 ~~-----------~i~y~~q~~  391 (635)
T PRK11147        381 KL-----------EVAYFDQHR  391 (635)
T ss_pred             Cc-----------EEEEEeCcc
Confidence            32           599999963

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.42  E-value=3e-13  Score=147.98  Aligned_cols=75  Identities=24%  Similarity=0.356  Sum_probs=66.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|+++.|+++               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|++++ 
T Consensus       320 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-  383 (552)
T TIGR03719       320 DKVIEAENLSKGFGDK---------------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-  383 (552)
T ss_pred             CeEEEEeeEEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence            3479999999999542               599999999999999999999999999999999999999999999843 


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +           ..+||+||+.
T Consensus       384 ~-----------~~i~~v~q~~  394 (552)
T TIGR03719       384 T-----------VKLAYVDQSR  394 (552)
T ss_pred             c-----------eEEEEEeCCc
Confidence            2           1599999974

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.42  E-value=5.6e-14  Score=126.71  Aligned_cols=89  Identities=19%  Similarity=0.394  Sum_probs=77.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .++++++||.|+|+.-               .+++++||+.++|+++.|+|.+|+||||.+++|.=+..|+.|.|.++|.
T Consensus         4 ~~~l~v~dlHK~~G~~---------------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~ge   68 (256)
T COG4598           4 ENALEVEDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGE   68 (256)
T ss_pred             ccceehhHHHhhcccc---------------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCe
Confidence            3578999999999653               5999999999999999999999999999999999999999999999998


Q ss_pred             ecCC------------cccHHHhhccEEEEccCCCc
Q 010435          484 SIRS------------SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~------------~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .|+-            ..+++++|.++|+++|+--|
T Consensus        69 ei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNL  104 (256)
T COG4598          69 EIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNL  104 (256)
T ss_pred             EEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcch
Confidence            7631            23467789999999996543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=3.2e-13  Score=149.72  Aligned_cols=75  Identities=23%  Similarity=0.296  Sum_probs=66.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++||+|.|+++               .+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++.
T Consensus       310 ~~~l~~~~l~~~y~~~---------------~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~  374 (638)
T PRK10636        310 NPLLKMEKVSAGYGDR---------------IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG  374 (638)
T ss_pred             CceEEEEeeEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC
Confidence            3479999999999642               5999999999999999999999999999999999999999999999631


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                                  ..+||+||+.
T Consensus       375 ------------~~igy~~Q~~  384 (638)
T PRK10636        375 ------------IKLGYFAQHQ  384 (638)
T ss_pred             ------------EEEEEecCcc
Confidence                        2589999963

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.41  E-value=3e-13  Score=146.52  Aligned_cols=69  Identities=20%  Similarity=0.427  Sum_probs=60.6

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      +++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++......+..|+.+||+||.
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~  346 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPED  346 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence            599999999999999999999999999999999999999999999999885322222346789999996

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.40  E-value=6.4e-13  Score=147.89  Aligned_cols=77  Identities=21%  Similarity=0.319  Sum_probs=68.2

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++              ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++.+++  
T Consensus       450 ~~i~~~nv~~~~~~~--------------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--  513 (659)
T TIGR00954       450 NGIKFENIPLVTPNG--------------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--  513 (659)
T ss_pred             CeEEEEeeEEECCCC--------------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence            469999999999632              1599999999999999999999999999999999999999999998753  


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                |+++|||||++.+
T Consensus       514 ----------~~~i~~v~Q~~~l  526 (659)
T TIGR00954       514 ----------KGKLFYVPQRPYM  526 (659)
T ss_pred             ----------CCcEEEECCCCCC
Confidence                      5679999998755

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.40  E-value=3.8e-13  Score=148.82  Aligned_cols=71  Identities=27%  Similarity=0.403  Sum_probs=64.0

Q ss_pred             CcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       433 ~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+++|+|+++++||+++|+||||||||||+++|+|..+|+   +|+|.++|.++.    ..+.|+.+|||||+|.+
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~----~~~~~~~i~yv~Q~~~~  110 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID----AKEMRAISAYVQQDDLF  110 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----HHHHhhhceeecccccc
Confidence            457999999999999999999999999999999999999885   799999999873    24678899999999865

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.40  E-value=2.5e-13  Score=133.86  Aligned_cols=80  Identities=25%  Similarity=0.299  Sum_probs=62.4

Q ss_pred             eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE----------
Q 010435          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL----------  479 (510)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~----------  479 (510)
                      .+|+|.|++.              +.+++|+|+ +++||+++|+|+||||||||+++|+|+++|++|+|.          
T Consensus         4 ~~~~~~y~~~--------------~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~   68 (255)
T cd03236           4 DEPVHRYGPN--------------SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILD   68 (255)
T ss_pred             cCcceeecCc--------------chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhh
Confidence            3677888532              149999994 999999999999999999999999999999999996          


Q ss_pred             -EcCeecCCcccHHHhh---ccEEEEccCCC
Q 010435          480 -IYGFSIRSSVSMTNIQ---KSIGVCPQVTL  506 (510)
Q Consensus       480 -i~g~~i~~~~~~~~~r---~~iG~cpQ~~~  506 (510)
                       ++|.++.+.  ..+.+   ..+++++|+..
T Consensus        69 ~~~g~~~~~~--~~~~~~~~~~i~~~~~~~~   97 (255)
T cd03236          69 EFRGSELQNY--FTKLLEGDVKVIVKPQYVD   97 (255)
T ss_pred             hccCchhhhh--hHHhhhcccceeeecchhc
Confidence             778877421  12222   24788888643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03073 ABC transporter F family; Provisional

Probab=99.40  E-value=6.5e-13  Score=148.25  Aligned_cols=75  Identities=23%  Similarity=0.352  Sum_probs=66.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++++++.|++.              ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.+++  
T Consensus       507 ~~L~~~~ls~~y~~~--------------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~--  570 (718)
T PLN03073        507 PIISFSDASFGYPGG--------------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--  570 (718)
T ss_pred             ceEEEEeeEEEeCCC--------------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--
Confidence            569999999999542              1489999999999999999999999999999999999999999999864  


Q ss_pred             cCCcccHHHhhccEEEEccCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                                +..+||+||+.
T Consensus       571 ----------~~~igyv~Q~~  581 (718)
T PLN03073        571 ----------KVRMAVFSQHH  581 (718)
T ss_pred             ----------ceeEEEEeccc
Confidence                      23699999974

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.38  E-value=1.1e-12  Score=138.74  Aligned_cols=89  Identities=19%  Similarity=0.369  Sum_probs=76.0

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC----cceEEEc
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALIY  481 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt----~G~i~i~  481 (510)
                      .++++||++.|....           ..+.||+|+||++.+||++||+|.+||||||+...|.|+.++.    +|+|.++
T Consensus         5 lL~V~nL~v~~~~~~-----------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~   73 (539)
T COG1123           5 LLEVENLTVEFATDG-----------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILD   73 (539)
T ss_pred             eEEEeceEEEEecCC-----------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEEC
Confidence            689999999997642           2357999999999999999999999999999999999999988    7999999


Q ss_pred             CeecCCc--ccHHHhh-ccEEEEccCC
Q 010435          482 GFSIRSS--VSMTNIQ-KSIGVCPQVT  505 (510)
Q Consensus       482 g~~i~~~--~~~~~~r-~~iG~cpQ~~  505 (510)
                      |.|+...  .+++++| +.|+++||.+
T Consensus        74 g~dl~~l~~~~~r~~rg~~Ia~i~Q~p  100 (539)
T COG1123          74 GRDLLGLSEREMRKLRGKRIAMIFQDP  100 (539)
T ss_pred             CcchhcCCHHHHHHhccccEEEEecCc
Confidence            9987532  2344444 6899999976

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.37  E-value=9.9e-13  Score=146.02  Aligned_cols=62  Identities=26%  Similarity=0.452  Sum_probs=58.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      .+++++++|.|++.               .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|
T Consensus         3 ~l~i~~ls~~~~~~---------------~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~   64 (635)
T PRK11147          3 LISIHGAWLSFSDA---------------PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ   64 (635)
T ss_pred             EEEEeeEEEEeCCc---------------eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence            48899999999642               599999999999999999999999999999999999999999999987

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.35  E-value=1.5e-12  Score=130.26  Aligned_cols=82  Identities=21%  Similarity=0.391  Sum_probs=72.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|....              --|..||+++++||++-|+|.|||||||+++.|+|++.|++|+|++||.+
T Consensus       321 ~~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p  386 (546)
T COG4615         321 KTLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP  386 (546)
T ss_pred             cceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc
Confidence            4799999999997642              25899999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEE
Q 010435          485 IRSSVSMTNIQKSIGVC  501 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~c  501 (510)
                      +.+ .+.++.|+...-+
T Consensus       387 V~~-e~ledYR~LfSav  402 (546)
T COG4615         387 VSA-EQLEDYRKLFSAV  402 (546)
T ss_pred             CCC-CCHHHHHHHHHHH
Confidence            974 5688888765443

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.35  E-value=2.2e-12  Score=136.79  Aligned_cols=68  Identities=19%  Similarity=0.272  Sum_probs=60.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||++.|++..            .+.+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus        20 ~mL~lknL~~~~~~~~------------~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~   87 (549)
T PRK13545         20 PFDKLKDLFFRSKDGE------------YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA   87 (549)
T ss_pred             ceeEEEEEEEecCCCc------------cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence            4678888888885431            2359999999999999999999999999999999999999999999999975

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.34  E-value=1.1e-12  Score=126.88  Aligned_cols=60  Identities=38%  Similarity=0.578  Sum_probs=53.5

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.      +.++.+||+||++.+
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~------~~~~~i~~v~q~~~~   60 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG------KGWRHIGYVPQRHEF   60 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch------HhhCcEEEecccccc
Confidence            568899999999999999999999999999999999999998762      346789999998643

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.32  E-value=1.6e-12  Score=124.84  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=46.9

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE-EcCeec
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFSI  485 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~-i~g~~i  485 (510)
                      +++|+||++++||+++|+|||||||||++++|+|+.+|++|++. ++|..+
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~   52 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL   52 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee
Confidence            79999999999999999999999999999999999999999997 777543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=1.3e-12  Score=119.00  Aligned_cols=63  Identities=24%  Similarity=0.367  Sum_probs=55.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEE
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG  499 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG  499 (510)
                      ..+.++||++.+||.+-+.||||||||||+++|+|+.+|++|+|+++|..++  ...++.++.+-
T Consensus        16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~--~~~~~~~~~l~   78 (209)
T COG4133          16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ--NVRESYHQALL   78 (209)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCc--cchhhHHHHHH
Confidence            6899999999999999999999999999999999999999999999999984  34444444433

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.30  E-value=2.9e-12  Score=125.71  Aligned_cols=59  Identities=29%  Similarity=0.422  Sum_probs=51.4

Q ss_pred             ceeeeeeEEEe-----CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435          435 HAIKGLWVNIA-----KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       435 ~av~~lsl~v~-----~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +.+++++|++.     +||+++|+|+||||||||+++|+|+.+|++|+|.++|.             .++|+||+..
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~   71 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIK   71 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEeccccc
Confidence            36777777776     79999999999999999999999999999999999873             4788888653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.5e-12  Score=131.50  Aligned_cols=90  Identities=27%  Similarity=0.412  Sum_probs=81.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...+...++++.|.+++              +.++++||+++.|+.++++|++|+||||++++|-+++.+++|.|.++|+
T Consensus       260 ~g~v~F~~V~F~y~~~r--------------~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~q  325 (497)
T COG5265         260 LGAVAFINVSFAYDPRR--------------PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ  325 (497)
T ss_pred             cceEEEEEEEeeccccc--------------hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcch
Confidence            34689999999997642              6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCcc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLFS  508 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L~  508 (510)
                      |++. ...+.+|+.||++||+.+|-
T Consensus       326 dir~-vtq~slR~aIg~VPQDtvLF  349 (497)
T COG5265         326 DIRD-VTQQSLRRAIGIVPQDTVLF  349 (497)
T ss_pred             hHHH-hHHHHHHHHhCcCcccceeh
Confidence            9974 45678999999999999884

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.30  E-value=6.6e-12  Score=110.28  Aligned_cols=83  Identities=24%  Similarity=0.447  Sum_probs=70.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCe
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGF  483 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~  483 (510)
                      +.++|++..-+++               ..+.++|++|.+|||+.|.||+||||||+++-+.|.+.+.   +|++++++.
T Consensus         3 l~l~nvsl~l~g~---------------cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~   67 (213)
T COG4136           3 LCLKNVSLRLPGS---------------CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ   67 (213)
T ss_pred             eeeeeeeecCCCc---------------eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCe
Confidence            4567777655443               3899999999999999999999999999999999999875   699999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.   ..-..||++|+.+|++.|
T Consensus        68 ~l~---~lPa~qRq~GiLFQD~lL   88 (213)
T COG4136          68 RLD---MLPAAQRQIGILFQDALL   88 (213)
T ss_pred             ecc---ccchhhhheeeeeccccc
Confidence            884   234568899999999865

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=1.7e-12  Score=116.29  Aligned_cols=91  Identities=18%  Similarity=0.304  Sum_probs=69.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee-
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS-  484 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~-  484 (510)
                      .+.+++++|+|---..        ..-..++++++||+|+.|||++|=||+||||||++++|-|-+.|++|+|.+.-.+ 
T Consensus         4 ~l~v~~~~KtFtlH~q--------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~   75 (235)
T COG4778           4 PLNVSNVSKTFTLHQQ--------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE   75 (235)
T ss_pred             eeeeecchhheEeeec--------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc
Confidence            5788999998832110        0112368999999999999999999999999999999999999999999996322 


Q ss_pred             ---cC--CcccHHHh-hccEEEEccC
Q 010435          485 ---IR--SSVSMTNI-QKSIGVCPQV  504 (510)
Q Consensus       485 ---i~--~~~~~~~~-r~~iG~cpQ~  504 (510)
                         +-  ...+.-++ |+.+||+.|+
T Consensus        76 ~vdl~~a~pr~vl~vRr~TiGyVSQF  101 (235)
T COG4778          76 WVDLVTAEPREVLEVRRTTIGYVSQF  101 (235)
T ss_pred             hhhhhccChHHHHHHHHhhhHHHHHH
Confidence               11  11223333 5679999997

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.29  E-value=5.4e-12  Score=135.38  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++++++.|+++               +.++++||++.+|+++||+|+|||||||++++|+|...|++|+|...+.  
T Consensus         3 ~i~~~~ls~~~g~~---------------~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--   65 (530)
T COG0488           3 MITLENLSLAYGDR---------------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--   65 (530)
T ss_pred             eEEEeeeEEeeCCc---------------eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--
Confidence            58899999999653               6999999999999999999999999999999999999999999998652  


Q ss_pred             CCcccHHHhhccEEEEccCCCcc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLFS  508 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L~  508 (510)
                                -++||.+|+..+.
T Consensus        66 ----------~~v~~l~Q~~~~~   78 (530)
T COG0488          66 ----------LRVGYLSQEPPLD   78 (530)
T ss_pred             ----------ceEEEeCCCCCcC
Confidence                      2589999977553

>PRK13409 putative ATPase RIL; Provisional

Probab=99.29  E-value=6.1e-12  Score=137.94  Aligned_cols=73  Identities=25%  Similarity=0.311  Sum_probs=64.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...+++++++|.|++                ..++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++  
T Consensus       338 ~~~l~~~~ls~~~~~----------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--  399 (590)
T PRK13409        338 ETLVEYPDLTKKLGD----------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--  399 (590)
T ss_pred             ceEEEEcceEEEECC----------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--
Confidence            346999999999953                25899999999999999999999999999999999999999999884  


Q ss_pred             ecCCcccHHHhhccEEEEccCCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                       +           .+||+||+..
T Consensus       400 -~-----------~i~y~~Q~~~  410 (590)
T PRK13409        400 -L-----------KISYKPQYIK  410 (590)
T ss_pred             -e-----------eEEEeccccc
Confidence             1           4899999754

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.29  E-value=2.9e-12  Score=113.76  Aligned_cols=84  Identities=21%  Similarity=0.405  Sum_probs=73.5

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      +|+++++++.|+..               .|+-|++|+.++||.+.||||+||||||+++.|.=+.-|.+|+..|.|..-
T Consensus         2 sirv~~in~~yg~~---------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f   66 (242)
T COG4161           2 SIQLNGINCFYGAH---------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             ceEEcccccccccc---------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence            48899999999653               699999999999999999999999999999999999999999999988543


Q ss_pred             C-----CcccHHHhhccEEEEccC
Q 010435          486 R-----SSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       486 ~-----~~~~~~~~r~~iG~cpQ~  504 (510)
                      .     ..+...+.|+.+|+++|.
T Consensus        67 d~s~~~~~k~i~~lr~~vgmvfqq   90 (242)
T COG4161          67 DFSKTPSDKAIRDLRRNVGMVFQQ   90 (242)
T ss_pred             ccccCccHHHHHHHHHhhhhhhhh
Confidence            1     123567789999999984

>PLN03140 ABC transporter G family member; Provisional

Probab=99.28  E-value=3.7e-12  Score=151.59  Aligned_cols=73  Identities=22%  Similarity=0.304  Sum_probs=64.5

Q ss_pred             CCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          431 TSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       431 ~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +..+.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+   +|+|.++|+++.+   . ..|+.+|||+|+|.+
T Consensus       175 ~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~-~~~~~i~yv~Q~d~~  250 (1470)
T PLN03140        175 KTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---F-VPRKTSAYISQNDVH  250 (1470)
T ss_pred             CccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---h-cccceeEEecccccC
Confidence            34567999999999999999999999999999999999999998   9999999998742   2 237889999999864

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.28  E-value=3.5e-12  Score=114.56  Aligned_cols=87  Identities=17%  Similarity=0.300  Sum_probs=69.6

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ++-+++++|+|.|++.               ..-+++||++++||+.||+|.+|+||||++++|+|-+.|++|+|.+.-.
T Consensus         4 ~PLL~V~~lsk~Yg~~---------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r   68 (258)
T COG4107           4 KPLLSVSGLSKLYGPG---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR   68 (258)
T ss_pred             CcceeehhhhhhhCCC---------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence            3468999999999764               3678999999999999999999999999999999999999999988653


Q ss_pred             ecC--CcccH------HHhhccEEEEccCC
Q 010435          484 SIR--SSVSM------TNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~--~~~~~------~~~r~~iG~cpQ~~  505 (510)
                      +-.  +...+      .-.|..=|++.|++
T Consensus        69 ~~~~~dl~~msEaeRR~L~RTeWG~VhQnP   98 (258)
T COG4107          69 DGQPRDLYTMSEAERRRLLRTEWGFVHQNP   98 (258)
T ss_pred             CCCchhHhhhchHHHHHHhhhccceeecCc
Confidence            311  01111      12356679999975

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.28  E-value=4.3e-12  Score=151.29  Aligned_cols=73  Identities=15%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             CcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc----cCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       433 ~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~----~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+++|+|+.+++||+++|+||||||||||+|+|+|+.    +|++|+|.++|.++.+  ...+.|+.+||++|+|.+
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~--~~~~~r~~i~yv~Q~d~~  149 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE--IKKHYRGDVVYNAETDVH  149 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHH--HHhhcCceeEEecccccc
Confidence            457999999999999999999999999999999999986    5789999999998732  123457789999998854

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.28  E-value=5.4e-12  Score=106.51  Aligned_cols=63  Identities=19%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      .|+++++|++++||+++|+||||||||||++++.      +|++.++|.|+.. .+.++.++..+++||.
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~-~~~~~~~~~~~~~~q~   65 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE-IREDSKDELIGRNPEL   65 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH-hhhhhcCCEEEEechh
Confidence            6999999999999999999999999999999986      8999999999852 3344556778888886

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.27  E-value=1.1e-11  Score=124.75  Aligned_cols=98  Identities=21%  Similarity=0.310  Sum_probs=82.9

Q ss_pred             CCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      .+..++.++++..|+-+..   + .++.-...+|||++||++++||.+||+|.+||||||+-..|.++++++ |+|..+|
T Consensus       273 ~~~ll~~~~v~v~f~i~~g---~-~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G  347 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGG---F-LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDG  347 (534)
T ss_pred             CCceEEecceEEEEecCCc---c-ccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECC
Confidence            3567899999999976532   2 122334568999999999999999999999999999999999999987 9999999


Q ss_pred             eecCC--cccHHHhhccEEEEccCC
Q 010435          483 FSIRS--SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       483 ~~i~~--~~~~~~~r~~iG~cpQ~~  505 (510)
                      .++..  ..++..+|+++.+|+|++
T Consensus       348 ~~i~~~~~~~mrplR~~mQvVFQDP  372 (534)
T COG4172         348 QDIDGLSRKEMRPLRRRMQVVFQDP  372 (534)
T ss_pred             ccccccChhhhhhhhhhceEEEeCC
Confidence            99953  356888999999999976

>PRK13409 putative ATPase RIL; Provisional

Probab=99.25  E-value=4.1e-12  Score=139.32  Aligned_cols=69  Identities=28%  Similarity=0.320  Sum_probs=55.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE-----------EcCeecCCcc-cHHHhhccEEEEc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-----------IYGFSIRSSV-SMTNIQKSIGVCP  502 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~-----------i~g~~i~~~~-~~~~~r~~iG~cp  502 (510)
                      .+|++++ .+++||++||+|||||||||++++|+|+++|++|++.           ++|.++.+.. ...+.+..+++.|
T Consensus        88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~  166 (590)
T PRK13409         88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP  166 (590)
T ss_pred             eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence            4899999 9999999999999999999999999999999999997           8998873210 1111233467777


Q ss_pred             cC
Q 010435          503 QV  504 (510)
Q Consensus       503 Q~  504 (510)
                      |.
T Consensus       167 q~  168 (590)
T PRK13409        167 QY  168 (590)
T ss_pred             cc
Confidence            74

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.23  E-value=2e-11  Score=147.07  Aligned_cols=75  Identities=20%  Similarity=0.353  Sum_probs=67.5

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|+++.|++..             ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|   
T Consensus       636 ~i~~~~~~~~~~~~~-------------~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---  699 (1522)
T TIGR00957       636 SITVHNATFTWARDL-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---  699 (1522)
T ss_pred             cEEEEEeEEEcCCCC-------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence            699999999996431             2589999999999999999999999999999999999999999999976   


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                 ++|||||.+.+
T Consensus       700 -----------~i~yv~Q~~~l  710 (1522)
T TIGR00957       700 -----------SVAYVPQQAWI  710 (1522)
T ss_pred             -----------EEEEEcCCccc
Confidence                       48999998654

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.22  E-value=3.3e-11  Score=132.54  Aligned_cols=90  Identities=23%  Similarity=0.356  Sum_probs=75.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC---CcceEEE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALI  480 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i  480 (510)
                      ...+.+++++..-+++.          ++.++.++|||..+++||++|++||+|||||||+++|+|-.+.   .+|+|.+
T Consensus        23 ~~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilv   92 (613)
T KOG0061|consen   23 PVKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL   92 (613)
T ss_pred             cceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEE
Confidence            34577888887775431          1245799999999999999999999999999999999999975   7899999


Q ss_pred             cCeecCCcccHHHhhccEEEEccCCCc
Q 010435          481 YGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       481 ~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ||+..    +.+..++..||++|+|++
T Consensus        93 NG~~~----~~~~~~~~s~yV~QdD~l  115 (613)
T KOG0061|consen   93 NGRPR----DSRSFRKISGYVQQDDVL  115 (613)
T ss_pred             CCccC----chhhhhheeEEEcccccc
Confidence            99654    456889999999999985

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.17  E-value=4.6e-11  Score=128.29  Aligned_cols=76  Identities=25%  Similarity=0.378  Sum_probs=67.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|++|.|++.              +..++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.-.
T Consensus       319 ~~vl~~~~~~~~y~~~--------------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~  384 (530)
T COG0488         319 KLVLEFENVSKGYDGG--------------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET  384 (530)
T ss_pred             CeeEEEeccccccCCC--------------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc
Confidence            5679999999999653              16899999999999999999999999999999999999999999998531


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                                  -++||.+|+.
T Consensus       385 ------------v~igyf~Q~~  394 (530)
T COG0488         385 ------------VKIGYFDQHR  394 (530)
T ss_pred             ------------eEEEEEEehh
Confidence                        2589999975

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.16  E-value=3.5e-11  Score=111.78  Aligned_cols=62  Identities=23%  Similarity=0.294  Sum_probs=50.9

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +.|++|+||++++||+++|+||||||||||++++.    +++|++.++|..-.      ..++.++|++|..
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~------~~~~~~~~~~q~~   69 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK------FSRNKLIFIDQLQ   69 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc------cccccEEEEhHHH
Confidence            47999999999999999999999999999999985    37999999876321      1144688888843

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03073 ABC transporter F family; Provisional

Probab=99.11  E-value=1.3e-10  Score=129.91  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=56.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc---cCCcceEEEc
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALIY  481 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~---~pt~G~i~i~  481 (510)
                      ..|+++|++|.|+++               .+++|+||+|.+||++||+|+||||||||+++|+|..   .|++|+|...
T Consensus       176 ~~I~i~nls~~y~~~---------------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~  240 (718)
T PLN03073        176 KDIHMENFSISVGGR---------------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHV  240 (718)
T ss_pred             eeEEEceEEEEeCCC---------------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEE
Confidence            459999999999642               5999999999999999999999999999999999964   5889999765


Q ss_pred             Cee
Q 010435          482 GFS  484 (510)
Q Consensus       482 g~~  484 (510)
                      +++
T Consensus       241 ~Q~  243 (718)
T PLN03073        241 EQE  243 (718)
T ss_pred             ecc
Confidence            443

>PLN03232 ABC transporter C family member; Provisional

Probab=99.09  E-value=1.5e-10  Score=139.46  Aligned_cols=78  Identities=22%  Similarity=0.343  Sum_probs=67.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.            ++.+++|+||++++||.++|+|++||||||+++.|.|+++|++|.+.     
T Consensus       613 ~~I~~~~vsF~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----  675 (1495)
T PLN03232        613 PAISIKNGYFSWDSKT------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----  675 (1495)
T ss_pred             CcEEEEeeEEEcCCCC------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----
Confidence            3699999999997531            12589999999999999999999999999999999999999998763     


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                              .+|+++|||||++.|
T Consensus       676 --------~~~~~Iayv~Q~p~L  690 (1495)
T PLN03232        676 --------VIRGSVAYVPQVSWI  690 (1495)
T ss_pred             --------EecCcEEEEcCcccc
Confidence                    246789999998755

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.09  E-value=1.1e-10  Score=112.61  Aligned_cols=69  Identities=22%  Similarity=0.358  Sum_probs=57.8

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc---ccHHHhhccEEEEccCCCc
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS---VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~---~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++|+.+...+++|-|++||||||++|||+|+.+|+.|.|.++|.-+.+.   -....-++++|||+|+--|
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL   87 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL   87 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc
Confidence            57888888899999999999999999999999999999999999866321   1233457899999997643

>PLN03130 ABC transporter C family member; Provisional

Probab=99.08  E-value=1.8e-10  Score=139.22  Aligned_cols=77  Identities=21%  Similarity=0.398  Sum_probs=67.5

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcCe
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGF  483 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g~  483 (510)
                      ..++++|+++.|+.+.            ++.+++|+||++++||.++|+|++||||||+++.|.|+++|++ |+|.+   
T Consensus       613 ~~I~~~nvsf~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---  677 (1622)
T PLN03130        613 PAISIKNGYFSWDSKA------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---  677 (1622)
T ss_pred             CceEEEeeEEEccCCC------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---
Confidence            3699999999996431            1258999999999999999999999999999999999999999 89874   


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                 |++++||||.+.|
T Consensus       678 -----------~~~Iayv~Q~p~L  690 (1622)
T PLN03130        678 -----------RGTVAYVPQVSWI  690 (1622)
T ss_pred             -----------cCeEEEEcCcccc
Confidence                       4579999998755

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.04  E-value=2.6e-10  Score=137.20  Aligned_cols=59  Identities=24%  Similarity=0.427  Sum_probs=55.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|              ++|||||+..|
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l  498 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWI  498 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCcc
Confidence            589999999999999999999999999999999999999999999987              38999998654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=98.99  E-value=5.7e-10  Score=134.57  Aligned_cols=60  Identities=23%  Similarity=0.399  Sum_probs=54.8

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++              +++|||||++.+
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l  732 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWI  732 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCcc
Confidence            369999999999999999999999999999999999999999999762              469999998654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.97  E-value=1.2e-09  Score=110.19  Aligned_cols=92  Identities=24%  Similarity=0.409  Sum_probs=76.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i  478 (510)
                      .+.+.++||+..|....           ..+.||+++||++++||.++|+|.+|||||-|...+.|+++-     -+|+|
T Consensus         4 ~~lL~v~nLsV~f~~~~-----------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i   72 (534)
T COG4172           4 MPLLSIRNLSVAFHQEG-----------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI   72 (534)
T ss_pred             CcceeeeccEEEEecCC-----------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee
Confidence            35689999999996532           245799999999999999999999999999999999999876     25899


Q ss_pred             EEcCeecCC--cccHHHhhc-cEEEEccCCC
Q 010435          479 LIYGFSIRS--SVSMTNIQK-SIGVCPQVTL  506 (510)
Q Consensus       479 ~i~g~~i~~--~~~~~~~r~-~iG~cpQ~~~  506 (510)
                      .++|.|+-.  ..++..+|. +||+++|.+.
T Consensus        73 ~f~G~dll~~se~~lr~iRG~~I~MIFQEPM  103 (534)
T COG4172          73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPM  103 (534)
T ss_pred             EEcChhhhcCCHHHHhhhcccceEEEecccc
Confidence            999999842  234566664 7999999874

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.95  E-value=4.6e-10  Score=117.07  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeecCC--cccHHHhhccEEEEcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSIRS--SVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i~~--~~~~~~~r~~iG~cpQ  503 (510)
                      .||+++|+++++||+++|+|||||||||+++  .|+..|++| +|.++|.++..  ...++.+|    +++|
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR----~VFQ   85 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD----EIFD   85 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH----HHHH
Confidence            5899999999999999999999999999999  788888888 79999999853  23344555    6666

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.86  E-value=9.8e-10  Score=104.20  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=52.2

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---------ceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---------GDALIYGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---------G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +++++++++| +++|+|||||||||++++|+|+.+|..         |++.++|.++..    ...++++|++||+.-
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~vfq~~~   86 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK----PANFAEVTLTFDNSD   86 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC----CCceEEEEEEEEcCC
Confidence            6789999999 999999999999999999999987663         467777776532    123578999999764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.82  E-value=1.1e-08  Score=118.93  Aligned_cols=78  Identities=26%  Similarity=0.447  Sum_probs=68.2

Q ss_pred             CCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      .+.++++++.+....+..            +...++|+||+|++||.+|++|+.|||||+|++.|.|..+..+|++.++|
T Consensus       515 ~~~~i~i~~~sfsW~~~~------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g  582 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSES------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG  582 (1381)
T ss_pred             CCceEEEeeeeEecCCCC------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence            356799999998886521            22499999999999999999999999999999999999999999999987


Q ss_pred             eecCCcccHHHhhccEEEEccCCC
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .              ++||||..-
T Consensus       583 s--------------iaYv~Q~pW  592 (1381)
T KOG0054|consen  583 S--------------VAYVPQQPW  592 (1381)
T ss_pred             e--------------EEEeccccH
Confidence            3              899999763

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.78  E-value=1.4e-08  Score=93.97  Aligned_cols=69  Identities=28%  Similarity=0.394  Sum_probs=62.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +.+|+++++++.|+...              +.+-|+|++++.|...-|+|.|||||||++++|+|-.-...|.|.+.|.
T Consensus        11 ~~aievsgl~f~y~~~d--------------P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgr   76 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSD--------------PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGR   76 (291)
T ss_pred             cceEEEeccEEecccCC--------------ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCc
Confidence            45899999999997652              6899999999999999999999999999999999988888899999998


Q ss_pred             ecC
Q 010435          484 SIR  486 (510)
Q Consensus       484 ~i~  486 (510)
                      +-.
T Consensus        77 saF   79 (291)
T KOG2355|consen   77 SAF   79 (291)
T ss_pred             Ccc
Confidence            753

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.77  E-value=3.9e-09  Score=95.32  Aligned_cols=66  Identities=26%  Similarity=0.431  Sum_probs=54.4

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      -+-.+|.++..||+.-++|||||||||++--++|+++ .+|+|.++|.++.. ....+..++-.|..|
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~-~~~~eLArhRAYLsQ   79 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEA-WSATELARHRAYLSQ   79 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhH-HhHhHHHHHHHHHhh
Confidence            4778999999999999999999999999999999976 68999999999853 344454444455555

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.73  E-value=2.9e-08  Score=104.01  Aligned_cols=88  Identities=14%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC-
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-  482 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g-  482 (510)
                      ...++.+++++.|...              ..+++.++ .+.+||+++|+|++|+||||++++|+|+.+|+.|.+.+.| 
T Consensus       137 p~~~~r~~v~~~l~TG--------------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe  201 (450)
T PRK06002        137 PPAMTRARVETGLRTG--------------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE  201 (450)
T ss_pred             CCCeEeecceEEcCCC--------------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence            4568999999999643              25899996 9999999999999999999999999999999999998864 


Q ss_pred             --eecCC--cccHHHh-hccEEEEccCCC
Q 010435          483 --FSIRS--SVSMTNI-QKSIGVCPQVTL  506 (510)
Q Consensus       483 --~~i~~--~~~~~~~-r~~iG~cpQ~~~  506 (510)
                        .++..  ...+... ++.+++++|.|-
T Consensus       202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        202 RGREVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence              55421  0122223 468999999773

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.69  E-value=6.2e-09  Score=101.86  Aligned_cols=67  Identities=15%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc----------------CCccCCcc--------eEEEcCeecCC--c
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT----------------GITPVTGG--------DALIYGFSIRS--S  488 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~----------------G~~~pt~G--------~i~i~g~~i~~--~  488 (510)
                      .++++++     |++++|+|||||||||++++|+                +++.+++|        ++.+++.+-..  .
T Consensus        16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~   90 (243)
T cd03272          16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID   90 (243)
T ss_pred             cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence            5788876     8999999999999999999997                55666666        55555532110  0


Q ss_pred             ccHHHhhccEEEEccCCC
Q 010435          489 VSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       489 ~~~~~~r~~iG~cpQ~~~  506 (510)
                      .+...+++.+|++||.-.
T Consensus        91 ~~~~~i~r~ig~~~~~~~  108 (243)
T cd03272          91 KEEVRLRRTIGLKKDEYF  108 (243)
T ss_pred             CCEEEEEEEEECCCCEEE
Confidence            122245778999988643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.68  E-value=2e-08  Score=99.53  Aligned_cols=60  Identities=18%  Similarity=0.131  Sum_probs=51.9

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.++++|+|||||||++++|+|+++|++|++.++|.++....+..++.+.++++||+++-
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~  171 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG  171 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccc
Confidence            678999999999999999999999999999999999985322356777788999998753

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.65  E-value=1.5e-08  Score=105.85  Aligned_cols=68  Identities=25%  Similarity=0.280  Sum_probs=60.6

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .+.+.+.|+++.|.+..              ...++++|.+..++.++++|||||||||++|+++|++.|+.|.+.-.-+
T Consensus       387 ~pvi~~~nv~F~y~~~~--------------~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H  452 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNP--------------MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH  452 (614)
T ss_pred             CCeEEEeccccCCCCcc--------------hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence            56789999999997642              4899999999999999999999999999999999999999999987665


Q ss_pred             ec
Q 010435          484 SI  485 (510)
Q Consensus       484 ~i  485 (510)
                      .+
T Consensus       453 ~~  454 (614)
T KOG0927|consen  453 NK  454 (614)
T ss_pred             cc
Confidence            43

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.60  E-value=1e-08  Score=98.37  Aligned_cols=52  Identities=21%  Similarity=0.468  Sum_probs=39.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhh-ccEEEEccCCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ-KSIGVCPQVTLF  507 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r-~~iG~cpQ~~~L  507 (510)
                      .+++++++     +++||+|||||||||++++|+          ++.|.+.      ...| +++|+++|...+
T Consensus        18 ~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~------~~~~~~~i~~~~~~~~~   70 (212)
T cd03274          18 QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA------SKMRQKKLSDLIHNSAG   70 (212)
T ss_pred             eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH------HHhhhhhHHHHhcCCCC
Confidence            58999987     899999999999999999997          4455443      1222 467888876543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.55  E-value=1.9e-07  Score=98.32  Aligned_cols=80  Identities=25%  Similarity=0.334  Sum_probs=67.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..+++++++..-+.+.             ...++++||+|++|+.+-|.||||+|||+|+++|.|+-|.++|++.--..
T Consensus       431 Dn~i~~e~v~l~tPt~g-------------~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~  497 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTNG-------------DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD  497 (659)
T ss_pred             cceEEeeeeeecCCCCC-------------ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc
Confidence            47899999999887641             16899999999999999999999999999999999999999999976542


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .-         -+.+=|+||.+
T Consensus       498 ~~---------~~~lfflPQrP  510 (659)
T KOG0060|consen  498 GG---------PKDLFFLPQRP  510 (659)
T ss_pred             CC---------CCceEEecCCC
Confidence            21         14588899976

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.53  E-value=5.5e-08  Score=94.29  Aligned_cols=34  Identities=26%  Similarity=0.538  Sum_probs=30.9

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHH-HHH
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI-SCL  467 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~-~~l  467 (510)
                      ++||+++||++++||++||+|+||||||||+ ..+
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            4799999999999999999999999999995 444

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.52  E-value=1.1e-07  Score=99.73  Aligned_cols=71  Identities=21%  Similarity=0.213  Sum_probs=53.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce---EEEcCeecCCc-----ccHHHhhccEEEEccCCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD---ALIYGFSIRSS-----VSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~---i~i~g~~i~~~-----~~~~~~r~~iG~cpQ~~~  506 (510)
                      .|++++ +.+.+||+++|+|+||+|||||+++|+|..+++.+.   +-.+|.+++.-     .+....|..++++||++.
T Consensus       144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s  222 (434)
T PRK07196        144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES  222 (434)
T ss_pred             eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence            699999 999999999999999999999999999999988643   33334333210     001123567999999863

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.48  E-value=5.9e-07  Score=93.43  Aligned_cols=87  Identities=14%  Similarity=0.276  Sum_probs=72.3

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...+++++|+..=+.              ...+|+++||+|++|||+||.|..|-|-+-|+..|+|+.+|.+|+|.++|.
T Consensus       255 ~~vL~V~~L~v~~~~--------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~  320 (501)
T COG3845         255 EVVLEVEDLSVKDRR--------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK  320 (501)
T ss_pred             CeEEEEeeeEeecCC--------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCE
Confidence            567899999865432              236999999999999999999999999999999999999998999999999


Q ss_pred             ec-CCcccHHHhhccEEEEccC
Q 010435          484 SI-RSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       484 ~i-~~~~~~~~~r~~iG~cpQ~  504 (510)
                      ++ ......+..+..+||+|.+
T Consensus       321 ~v~~~~~~~~~r~~G~~~VPed  342 (501)
T COG3845         321 DVLGRLSPRERRRLGLAYVPED  342 (501)
T ss_pred             eccccCCHHHHHhcCCccCChh
Confidence            97 3223344456689999864

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.44  E-value=2.7e-07  Score=97.30  Aligned_cols=70  Identities=21%  Similarity=0.268  Sum_probs=58.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc-------ccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-------VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~-------~~~~~~r~~iG~cpQ~~  505 (510)
                      +++|++ +.+.+||+++|+|+||+||||++++|+|..+|+.|.+.+.|.+-++.       .+.+.+++.++++.+.|
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~  223 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD  223 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence            589999 99999999999999999999999999999999999999965443211       12234678899998755

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.42  E-value=1.3e-07  Score=90.71  Aligned_cols=66  Identities=20%  Similarity=0.145  Sum_probs=44.3

Q ss_pred             eeeeEEEe-CCcEEEEecCCCCchhHHHHHHcC-CccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          438 KGLWVNIA-KDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       438 ~~lsl~v~-~gei~~llG~nGaGKsTl~~~l~G-~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++++|... +|++++|+|+|||||||++++|++ ++.+..+....+. .. +.....+.+..+++.+|.+
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~-~~~~~~~~~~~v~~~f~~~   85 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LR-SVFAPGEDTAEVSFTFQLG   85 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HH-HHhcCCCccEEEEEEEEEC
Confidence            56667654 599999999999999999999996 4445555554431 10 0111223466789888865

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.41  E-value=6.6e-07  Score=94.56  Aligned_cols=69  Identities=22%  Similarity=0.415  Sum_probs=63.2

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      .++|+||++++|||+||-|--|||+|-+++.|-|..++++|+|.++|.+++-....+.++..+||||-+
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ED  342 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPED  342 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcc
Confidence            589999999999999999999999999999999999999999999999886545677888999999963

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.39  E-value=1.7e-07  Score=88.01  Aligned_cols=65  Identities=17%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      ..+=+.+.+++|+.++++|+||||||||++.|+|+++|+.|.+.+.+..-.   .. ..+..++++.|.
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~---~~-~~~~~~~~~~~~   78 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAEL---QL-PHPNWVRLVTRP   78 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCcccc---CC-CCCCEEEEEEec
Confidence            445566778999999999999999999999999999999999999764321   11 123446666554

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.35  E-value=9e-07  Score=92.32  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=62.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .+|.++|+-..-+...              ..|..++|+|++|-..-|+||||||||+++++|.|+-|.-.|..++-   
T Consensus       480 ~gI~lenIpvItP~~~--------------vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P---  542 (728)
T KOG0064|consen  480 NGIILENIPVITPAGD--------------VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP---  542 (728)
T ss_pred             cceEEecCceeccCcc--------------eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC---
Confidence            3577888777765431              58999999999999999999999999999999999999866666552   


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                          .     +.+|-|.||.+-.
T Consensus       543 ----~-----~~~mFYIPQRPYm  556 (728)
T KOG0064|consen  543 ----R-----PNNIFYIPQRPYM  556 (728)
T ss_pred             ----C-----CcceEeccCCCcc
Confidence                1     3459999997643

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.35  E-value=2.6e-07  Score=88.09  Aligned_cols=59  Identities=27%  Similarity=0.333  Sum_probs=44.3

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHH----cCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCL----TGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l----~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +++.+| +++|+|||||||||+++.|    .|..+|++|.+.-+...+.    ....+..+++++|++
T Consensus        18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~----~~~~~~~v~~~f~~~   80 (204)
T cd03240          18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR----EGEVRAQVKLAFENA   80 (204)
T ss_pred             EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh----CCCCcEEEEEEEEeC
Confidence            445566 9999999999999999999    5999999887762222221    123466899999976

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=4.9e-07  Score=92.14  Aligned_cols=63  Identities=25%  Similarity=0.421  Sum_probs=56.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      ++.+-++++++.|++..              +..+.++|.|.=...++|+||||.||||++++|+|-+.|+.|+..-
T Consensus       584 PPvLGlH~VtFgy~gqk--------------pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK  646 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQK--------------PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK  646 (807)
T ss_pred             CCeeecccccccCCCCC--------------chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc
Confidence            56789999999997652              5889999999999999999999999999999999999999987643

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.32  E-value=1.5e-06  Score=93.68  Aligned_cols=78  Identities=19%  Similarity=0.338  Sum_probs=65.3

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|++..-++..              .-|+++++++++||-+-|.|+|||||||+++.|+|+-|--+|++..-. 
T Consensus       390 ~~~i~~~nl~l~~p~~~--------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-  454 (604)
T COG4178         390 DHGITLENLSLRTPDGQ--------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-  454 (604)
T ss_pred             cceeEEeeeeEECCCCC--------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-
Confidence            46799999999887641              589999999999999999999999999999999999999999887751 


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                 ...+=|.||.+-+
T Consensus       455 -----------~~~~lflpQ~PY~  467 (604)
T COG4178         455 -----------DSALLFLPQRPYL  467 (604)
T ss_pred             -----------CCceEEecCCCCC
Confidence                       1235677776644

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.27  E-value=9.6e-07  Score=90.79  Aligned_cols=57  Identities=30%  Similarity=0.411  Sum_probs=44.5

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      ..+...+++|.|++-                .|.-=.=+++.||++|++||||-||||..++|+|.++|++|.
T Consensus       341 ~lv~y~~~~k~~g~F----------------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         341 TLVEYPDLKKTYGDF----------------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             eeeecchheeecCce----------------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            346777777877542                222222356788999999999999999999999999999996

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.24  E-value=1.6e-06  Score=91.00  Aligned_cols=62  Identities=26%  Similarity=0.448  Sum_probs=55.2

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      ...+++.++++.|.+.               ..++|.+|++.+||..||+|+|||||||++++|+|-..|..-++-+
T Consensus        73 s~dvk~~sls~s~~g~---------------~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~  134 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHGV---------------ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF  134 (614)
T ss_pred             cccceeeeeeeccCCc---------------eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence            4579999999999654               6899999999999999999999999999999999999887765544

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.23  E-value=6.7e-07  Score=88.06  Aligned_cols=59  Identities=14%  Similarity=0.155  Sum_probs=43.4

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCe-ecCCcccH-HHhhccEEEEccCC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGF-SIRSSVSM-TNIQKSIGVCPQVT  505 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~-~i~~~~~~-~~~r~~iG~cpQ~~  505 (510)
                      ..+++|+|+|||||||++++|.+++.++ .|++...|. ++...... ...+..+++.+|.+
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~   86 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNS   86 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcC
Confidence            5799999999999999999999999887 468888776 43111111 12245899999974

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK08149 ATP synthase SpaL; Validated

Probab=98.21  E-value=1.9e-06  Score=90.29  Aligned_cols=68  Identities=19%  Similarity=0.192  Sum_probs=54.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---ceEEEcCeecCCccc--HH-HhhccEEEEcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSVS--MT-NIQKSIGVCPQ  503 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---G~i~i~g~~i~~~~~--~~-~~r~~iG~cpQ  503 (510)
                      +|++++ +.+.+||+++|+|+||+||||++++|++...++.   |.|..+|.++..-.+  .+ ..+++++++..
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~  213 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYA  213 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEE
Confidence            699999 9999999999999999999999999999999887   889999988742111  11 12356777754

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.16  E-value=1.2e-06  Score=88.97  Aligned_cols=49  Identities=22%  Similarity=0.362  Sum_probs=44.1

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--------ccCCcceEEEcC
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYG  482 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--------~~pt~G~i~i~g  482 (510)
                      ..+++|+||++++|++.++.|++||||||+++||.|.        +.|++|.+.+--
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~  452 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK  452 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence            3699999999999999999999999999999999985        478999988743

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.15  E-value=1.6e-06  Score=80.62  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=39.9

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      +||+++++|+|||||||+++.|+|++.+    +.++|.++....+.++.  ..|+.+|+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~--~~g~~~~~   54 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKM--SQGIPLTD   54 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHH--hcCCCCCc
Confidence            5899999999999999999999999877    58999887432222222  34555554

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.14  E-value=2.4e-06  Score=79.58  Aligned_cols=88  Identities=15%  Similarity=0.233  Sum_probs=64.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC----CcceEEEcC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIYG  482 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p----t~G~i~i~g  482 (510)
                      +.++||+..+..+.           +.++|||++|+++.+|||-||+|.+|+|||-..+.|+|..+-    |..+...+.
T Consensus         4 LDIrnL~IE~~Tsq-----------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~   72 (330)
T COG4170           4 LDIRNLTIEFKTSQ-----------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD   72 (330)
T ss_pred             ccccceEEEEecCC-----------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc
Confidence            45778887776543           246799999999999999999999999999999999998753    445555665


Q ss_pred             eecCCcc---cHHHhhccEEEEccCC
Q 010435          483 FSIRSSV---SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       483 ~~i~~~~---~~~~~r~~iG~cpQ~~  505 (510)
                      .|+-..+   ..+-+-+.+.+.+|.+
T Consensus        73 idLL~L~Pr~RRk~ig~~isMIFQeP   98 (330)
T COG4170          73 IDLLRLSPRERRKLVGHNVSMIFQEP   98 (330)
T ss_pred             chhhcCChHHhhhhhccchhhhhcCc
Confidence            5542211   1222345677888865

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.12  E-value=3.3e-06  Score=85.62  Aligned_cols=49  Identities=24%  Similarity=0.350  Sum_probs=45.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ++++++ +.+.+||+++|+|+||+||||++++|+|...|+.|.+..-|.+
T Consensus        58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            599999 9999999999999999999999999999999998888776644

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.08  E-value=2.1e-06  Score=83.38  Aligned_cols=55  Identities=24%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCCcce----EEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD----ALIYGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~----i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ..++||.|+|||||||+++.|++.+++++|.    +..++....     ...++..|++++.+.
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~-----~~~~~~~g~~~~~~~   91 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD-----NAVLDAHGLRPRKGA   91 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC-----HHHHHhcccccccCC
Confidence            4699999999999999999999999999998    444544321     123345677776443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.08  E-value=4.4e-06  Score=78.39  Aligned_cols=54  Identities=22%  Similarity=0.370  Sum_probs=41.8

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      |++++|+|||||||||++++|++...+   .+.+.+..+... .....++.+++.+|.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~   55 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRP-ASAGSENHIALSEQE   55 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCc-cchhHHhheeEcHHH
Confidence            789999999999999999999998876   577777766432 223345678888774

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.07  E-value=2.3e-06  Score=81.23  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=30.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .+.+|++++.  |++++|+|||||||||++++|+|..
T Consensus        15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            4778888776  7999999999999999999998855

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.07  E-value=4.4e-06  Score=87.66  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +.++.+.+++.+...              ++|++++ +.+.+||.++|+|+||+||||++++|+|...++.|.+...|..
T Consensus       128 ~~~~r~~v~~~l~tG--------------i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        128 PAMVRQPITQPLMTG--------------IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             CceeccCHhheeCCC--------------ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            456777777777432              2699999 9999999999999999999999999999999999888776654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.06  E-value=3.8e-06  Score=79.77  Aligned_cols=44  Identities=23%  Similarity=0.449  Sum_probs=37.5

Q ss_pred             eeeeeeEEEeCCc-EEEEecCCCCchhHHHHHHc--------CCccCCcceEE
Q 010435          436 AIKGLWVNIAKDQ-LFCLLGPNGAGKTTTISCLT--------GITPVTGGDAL  479 (510)
Q Consensus       436 av~~lsl~v~~ge-i~~llG~nGaGKsTl~~~l~--------G~~~pt~G~i~  479 (510)
                      .+.++|+++.+|+ +++|.||||+||||++++|.        |.+.|....+.
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~   68 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS   68 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc
Confidence            5678999999995 89999999999999999999        87777654443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.02  E-value=6.2e-06  Score=94.73  Aligned_cols=70  Identities=21%  Similarity=0.371  Sum_probs=61.0

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...++|+|.-+++||.+-+|||.||||||+++.|+|-.+-.   .|+|..+|++.+   +... ++.++||+|+|+.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~---e~~~-~~~~aY~~e~DvH  200 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLK---EFVP-KKTVAYNSEQDVH  200 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccc---cccc-CceEEeccccccc
Confidence            46999999999999999999999999999999999977543   579999999974   2333 8899999999975

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.01  E-value=4.3e-06  Score=87.72  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---ceEEEcCeecCCcc--cHHHhhccEEEEccC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSV--SMTNIQKSIGVCPQV  504 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---G~i~i~g~~i~~~~--~~~~~r~~iG~cpQ~  504 (510)
                      +|+|.+ +.+.+||+++|+|+||+||||++++|+|+.+|+.   |.|..+|.++....  ....-.+..+++.|.
T Consensus       164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~  237 (455)
T PRK07960        164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAA  237 (455)
T ss_pred             eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEE
Confidence            478777 9999999999999999999999999999999986   89999998873210  011112356666664

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.99  E-value=5.6e-06  Score=84.14  Aligned_cols=60  Identities=25%  Similarity=0.243  Sum_probs=48.0

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cH--HHhhccEEEEccC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SM--TNIQKSIGVCPQV  504 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~--~~~r~~iG~cpQ~  504 (510)
                      ++|++++++||||+|||||+..|++.+.+..|+|.+-+.|.....   +.  ...+..+++++|.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~  176 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK  176 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence            568999999999999999999999999998899999888863211   11  1235678999884

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.98  E-value=5.8e-06  Score=88.63  Aligned_cols=61  Identities=25%  Similarity=0.391  Sum_probs=54.5

Q ss_pred             eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++.++..               .+++++++.+..|+.++++|+||+||||+++.|.|+++|.+|+..+++..|
T Consensus       188 ~d~~~v~Gq~---------------~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        188 HDLSDVIGQE---------------QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             cCeEEEECcH---------------HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            4777777542               589999999999999999999999999999999999999999999987665

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.96  E-value=6.4e-06  Score=78.47  Aligned_cols=34  Identities=18%  Similarity=0.398  Sum_probs=32.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .+.+|+++++++|++++|.||||+||||++++++
T Consensus        17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   50 (204)
T cd03282          17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA   50 (204)
T ss_pred             EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence            5899999999999999999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.95  E-value=9.1e-06  Score=85.61  Aligned_cols=49  Identities=20%  Similarity=0.347  Sum_probs=46.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ++++++ +.+.+||+++|+|+||+||||++++++|...++.|.+...|..
T Consensus       152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer  200 (441)
T PRK09099        152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER  200 (441)
T ss_pred             eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence            699999 9999999999999999999999999999999999998888854

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.95  E-value=1.1e-05  Score=84.63  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=55.0

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccH-------HHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM-------TNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~-------~~~r~~iG~cpQ~~  505 (510)
                      +++|++ +.+.+||+++|+|+||+||||++++|++..+++.|.+...|...+...+.       +..++.+-+|.|.|
T Consensus       126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd  202 (413)
T TIGR03497       126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSD  202 (413)
T ss_pred             eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCC
Confidence            599999 99999999999999999999999999999999999888888654211110       11235566777655

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=9.2e-06  Score=84.87  Aligned_cols=51  Identities=18%  Similarity=0.402  Sum_probs=46.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ..-|.+.+++..|+++               ..+++-+|++..|...||+|+||+||||||++|+.
T Consensus        78 ~~Di~~~~fdLa~G~k---------------~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGGK---------------ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ccceeeeeeeeeecch---------------hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            3458888999999754               58999999999999999999999999999999987

>PRK01889 GTPase RsgA; Reviewed

Probab=97.92  E-value=1.1e-05  Score=83.50  Aligned_cols=66  Identities=21%  Similarity=0.239  Sum_probs=53.6

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      -++.+.-.+++|++++++|+||+||||+++.|+|...++.|++.+++...+.    ...++.++++||..
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~----tt~~~~l~~l~~~~  249 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH----TTTHRELHPLPSGG  249 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc----hhhhccEEEecCCC
Confidence            3555666678999999999999999999999999999999999998754321    12356899999864

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.91  E-value=1.5e-05  Score=83.67  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=54.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++.+.+++.|...              .+++|++ +.+.+||..+|+|+||+||||++++|+|..+|+.|.+.+.|..-
T Consensus       130 ~~~r~~i~~~l~TG--------------iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg  194 (432)
T PRK06793        130 AFEREEITDVFETG--------------IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG  194 (432)
T ss_pred             chheechhhccCCC--------------CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence            45666777777532              2588885 99999999999999999999999999999999999998877654

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.90  E-value=7.8e-06  Score=86.06  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=37.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      +|+|++ +.+.+||+++|+|+||+||||++++|+|...|+
T Consensus       157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d  195 (451)
T PRK05688        157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD  195 (451)
T ss_pred             eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            699999 999999999999999999999999999998776

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.88  E-value=1.1e-05  Score=85.00  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=45.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ++++++ +.+.+||.++|+|+||+||||++++|+|...|+.|.+...|.+
T Consensus       134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~  182 (422)
T TIGR02546       134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER  182 (422)
T ss_pred             eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence            599999 9999999999999999999999999999999999988876554

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.87  E-value=1.5e-05  Score=83.60  Aligned_cols=50  Identities=20%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .|++ .++.+.+||+++|+|+||+||||++++|+|..+|+.|.+...|..-
T Consensus       129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~  178 (418)
T TIGR03498       129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG  178 (418)
T ss_pred             EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence            4776 6999999999999999999999999999999999999998888754

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.87  E-value=4.5e-06  Score=88.78  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=36.8

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      ++++.+..+.+|++++|+||||+|||||+..|++.+....|.
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            566677777889999999999999999999999998877764

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.86  E-value=1.4e-05  Score=84.50  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=44.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +++|++ +.+.+||.++|+|+||+||||++++|+|..+++.|.+...|..
T Consensus       152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r  200 (440)
T TIGR01026       152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER  200 (440)
T ss_pred             eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence            699999 9999999999999999999999999999999998877766654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.85  E-value=1.3e-05  Score=82.59  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=32.3

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      .++|+++||||+||-||||.+++|+|.+.|.-|+-
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~  131 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY  131 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence            47899999999999999999999999999987763

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.84  E-value=1.8e-05  Score=59.99  Aligned_cols=39  Identities=21%  Similarity=0.397  Sum_probs=30.3

Q ss_pred             eeeeeEEEeC-CcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435          437 IKGLWVNIAK-DQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (510)
Q Consensus       437 v~~lsl~v~~-gei~~llG~nGaGKsTl~~~l~G~~~pt~  475 (510)
                      .++-++++.+ |.++.|.|+|||||||++..+.=.+-+..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4445667764 56999999999999999998877665543

>PRK06315 type III secretion system ATPase; Provisional

Probab=97.84  E-value=1.1e-05  Score=85.01  Aligned_cols=47  Identities=17%  Similarity=0.368  Sum_probs=40.7

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYG  482 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g  482 (510)
                      +|+|++ +.+.+||.++|+|+||+||||++++|+|..+++. |.+...|
T Consensus       153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            699998 9999999999999999999999999999985544 5565534

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.83  E-value=1.2e-05  Score=76.50  Aligned_cols=39  Identities=33%  Similarity=0.577  Sum_probs=34.3

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCcc------------CCcceEEEcCeec
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI  485 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~------------pt~G~i~i~g~~i  485 (510)
                      ++|++++|+|++||||||+++.|.+.++            |..|+  ++|.+.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~   53 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY   53 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence            5899999999999999999999999985            77788  577665

>TIGR00235 udk uridine kinase

Probab=97.82  E-value=8.1e-06  Score=77.93  Aligned_cols=29  Identities=24%  Similarity=0.233  Sum_probs=27.3

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      ++|+++||.|+|||||||+++.|+|++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57899999999999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.82  E-value=2.1e-05  Score=74.73  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=28.2

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      +-..++++.+|++++|+|||||||||++++|.+
T Consensus        19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence            445566666899999999999999999999993

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.81  E-value=1.1e-05  Score=80.79  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCcc--CCcceEEEcCee
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYGFS  484 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~--pt~G~i~i~g~~  484 (510)
                      .++||.|+|||||||++++|.+++.  |++|++.+-+.|
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D  101 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD  101 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence            5999999999999999999999998  788998775544

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK05922 type III secretion system ATPase; Validated

Probab=97.81  E-value=2.5e-05  Score=82.00  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=44.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +++|.+ +.+.+||.++|.|+||+||||++++|+|..+++.|.+...|..
T Consensus       146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer  194 (434)
T PRK05922        146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER  194 (434)
T ss_pred             eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence            588887 9999999999999999999999999999999999988766653

>PLN02796 D-glycerate 3-kinase

Probab=97.78  E-value=8.1e-06  Score=82.94  Aligned_cols=51  Identities=22%  Similarity=0.221  Sum_probs=42.8

Q ss_pred             eeeeeeEEE---eCCcE-----EEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecC
Q 010435          436 AIKGLWVNI---AKDQL-----FCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR  486 (510)
Q Consensus       436 av~~lsl~v---~~gei-----~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~  486 (510)
                      +++++++.+   ++|+.     +||.|++||||||+++.|.+++.+.   .|.+.++|..+.
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            666777766   55665     9999999999999999999999875   588999998874

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=97.77  E-value=2.9e-05  Score=81.36  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=44.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .+++.+ +.+.+||+++|+|+||+||||++++|+|...|+.+.+...|..
T Consensus       126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer  174 (411)
T TIGR03496       126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER  174 (411)
T ss_pred             Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence            589999 9999999999999999999999999999999988776655554

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.77  E-value=1.5e-05  Score=80.13  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHhhc-cEEEEccCCCc
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQK-SIGVCPQVTLF  507 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~r~-~iG~cpQ~~~L  507 (510)
                      ++.+...++ +++++++|+||+|||||+|.|.|...++.|++..   .|....  ++...++. ..|++.+.+.+
T Consensus       152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT--~~~~~~~~~~~~~liDtPG~  223 (287)
T cd01854         152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTT--THRELFPLPGGGLLIDTPGF  223 (287)
T ss_pred             HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCccc--ceEEEEEcCCCCEEEECCCC
Confidence            344444444 5899999999999999999999999999999876   344332  12222222 26778777665

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.74  E-value=2.6e-05  Score=75.26  Aligned_cols=45  Identities=16%  Similarity=0.148  Sum_probs=39.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC-CccCCcceEE
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDAL  479 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G-~~~pt~G~i~  479 (510)
                      .+.+|+++++.+|++++|.||||+||||+++++++ .+.+..|...
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v   64 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV   64 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            47899999999999999999999999999999999 6666667543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.73  E-value=2.5e-05  Score=82.08  Aligned_cols=51  Identities=22%  Similarity=0.250  Sum_probs=46.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      .+++++ +.+.+||+++|+|+||+||||++++|++...++.+.+...|..-+
T Consensus       146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr  196 (434)
T PRK08472        146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR  196 (434)
T ss_pred             HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence            589999 999999999999999999999999999999888898888887653

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.70  E-value=2.4e-05  Score=74.20  Aligned_cols=56  Identities=20%  Similarity=0.267  Sum_probs=43.3

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++|+++++.|.+||||||+.+.|.+.+.+. .|.+.++|.+++.     .....+||.+|..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~-----~~~~~~~~~~~~~   78 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH-----GLCSDLGFSDADR   78 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh-----hhhhcCCcCcccH
Confidence            467899999999999999999999977654 4689999977632     2233577777753

>cd00879 Sar1 Sar1 subfamily

Probab=97.67  E-value=2.9e-05  Score=72.56  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=42.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC--------CccCCcceEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--------ITPVTGGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G--------~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++..+++++ +++|++|+||||+++.+++        ...|+.+++.++|.++
T Consensus         8 ~~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~   65 (190)
T cd00879           8 NVLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF   65 (190)
T ss_pred             HHHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence            378889999888888 9999999999999999998        4566678888887653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.66  E-value=2.5e-05  Score=79.32  Aligned_cols=42  Identities=29%  Similarity=0.306  Sum_probs=39.6

Q ss_pred             eeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       440 lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      +++.++.|+.+++.|++||||||+++.|+|++++..|.+.|.
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie  178 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE  178 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence            678899999999999999999999999999999999988885

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR00767 rho transcription termination factor Rho

Probab=97.66  E-value=0.0001  Score=76.23  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=49.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceee-----------eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK-----------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~-----------~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ...+.+++|+..|++.+              .+|+           |+.+.+.+||..+|+|+.|+||||+++.|...+.
T Consensus       128 ~~ri~Fe~LTf~YP~er--------------~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       128 KNRVLFENLTPLYPNER--------------LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCCeEEEEeeecCCCcc--------------ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            34699999999997642              3564           9999999999999999999999999999999876


Q ss_pred             CC
Q 010435          473 VT  474 (510)
Q Consensus       473 pt  474 (510)
                      ..
T Consensus       194 ~n  195 (415)
T TIGR00767       194 RN  195 (415)
T ss_pred             cc
Confidence            54

Members of this family differ in the specificity of RNA binding.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=2.2e-05  Score=87.35  Aligned_cols=49  Identities=24%  Similarity=0.353  Sum_probs=41.1

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCee
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFS  484 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~  484 (510)
                      ++++.++.+++|++++++||||+|||||+..|++.+....|  +|.+-..|
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D  224 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD  224 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence            56777777888999999999999999999999999877776  56665544

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.65  E-value=4.4e-05  Score=80.00  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=36.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      .|+|.+ +.+.+||..+|+|+||+||||++++|+|...++
T Consensus       151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            588888 999999999999999999999999999988774

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.64  E-value=8.3e-05  Score=69.07  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=27.6

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      |++++|+|+|||||||+++.|++.+.+. |.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence            6789999999999999999999987654 54444

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.64  E-value=4.3e-05  Score=72.57  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=40.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|+|++||||||+++.+.+.+++..| +.+-..|... ..-.++.+..|++||.+++
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~   59 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYT-QEDAEFLVKNSALPPERIL   59 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCC-hhHHHHHHHcCCCCcCcee
Confidence            5789999999999999999999888655 4444455532 2223344566887887653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.61  E-value=4.1e-05  Score=79.12  Aligned_cols=60  Identities=17%  Similarity=0.279  Sum_probs=42.9

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCC--c-ceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT--G-GDALIYGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt--~-G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ++|..+.+.||||||||||++.|.+.+.++  . +.+.....++  ....+..++..+.|+|..+
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi--E~~~~~~~~~~~~v~Q~~v  194 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI--EFVYDEIETISASVCQSEI  194 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc--eEeccccccccceeeeeec
Confidence            578999999999999999999999988543  3 3555544444  2333444555688888643

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=4.8e-05  Score=79.62  Aligned_cols=78  Identities=21%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .+.+++..+.+.|..+.            . ....++++++.-....+.+|+||+||||+++++.|...|++|.+.+.+ 
T Consensus       360 ~p~l~i~~V~f~y~p~~------------y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-  425 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSE------------Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-  425 (582)
T ss_pred             CCeeEEEeeeccCCCcc------------h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-
Confidence            56799999999996542            1 578899999999999999999999999999999999999999998864 


Q ss_pred             ecCCcccHHHhhccEEEEccCCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                                 |+++||-.||.+
T Consensus       426 -----------r~ri~~f~Qhhv  437 (582)
T KOG0062|consen  426 -----------RLRIKYFAQHHV  437 (582)
T ss_pred             -----------cceecchhHhhh
Confidence                       556788777653

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.56  E-value=8.9e-05  Score=73.29  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l  467 (510)
                      +.|+|++++++.|+.+++.|++|||||||++.+
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            689999999999999999999999999999855

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.56  E-value=7.9e-05  Score=89.10  Aligned_cols=48  Identities=19%  Similarity=0.084  Sum_probs=41.9

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      +.+-.|++.+| +++|+|+|||||||++++|++++.|+.|.+.+++.+.
T Consensus        18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~   65 (1486)
T PRK04863         18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (1486)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCccc
Confidence            45557888775 9999999999999999999999999999999987653

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.55  E-value=3.6e-05  Score=74.22  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccC--CcceEEE---cCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPV--TGGDALI---YGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i---~g~~  484 (510)
                      ++||.|+|||||||+++.|.+.+.+  .+|++.+   +|+-
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            5799999999999999999999975  5566665   6653

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00606 rad50 rad50

Probab=97.54  E-value=9.7e-05  Score=88.93  Aligned_cols=54  Identities=37%  Similarity=0.575  Sum_probs=41.9

Q ss_pred             CcEEEEecCCCCchhHHHHHH----cCCccCC-cceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          447 DQLFCLLGPNGAGKTTTISCL----TGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l----~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      ..+++|+|||||||||++.+|    +|..+|+ +|.+++.|.++..   ....+..+.+.++
T Consensus        28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~---~~~~~a~V~l~F~   86 (1311)
T TIGR00606        28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQ---ETDVRAQIRLQFR   86 (1311)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCc---cHhhhheeEEEEE
Confidence            359999999999999999999    6999996 7999998876632   1244555666653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=4.1e-05  Score=80.33  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCc----cC-CcceEEEcCeec
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT----PV-TGGDALIYGFSI  485 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~----~p-t~G~i~i~g~~i  485 (510)
                      +.+|++++|+|+||+|||||++.|+|..    .+ .-|-+..+++.+
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri  234 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI  234 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence            4689999999999999999999999853    22 335566666655

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.51  E-value=6.9e-05  Score=72.10  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+.+|++++..+ ++++|.||||+||||+++++++
T Consensus        19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence            488999999987 9999999999999999999965

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK06820 type III secretion system ATPase; Validated

Probab=97.51  E-value=0.00012  Score=77.16  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=41.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      +|+|.+ +.+.+||..+|+|+||+|||||+++|++...|+.+-+-.-|
T Consensus       152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iG  198 (440)
T PRK06820        152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIG  198 (440)
T ss_pred             ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEc
Confidence            699999 99999999999999999999999999999988875443333

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.49  E-value=0.00011  Score=77.33  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=37.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~  475 (510)
                      ++++++ +.+.+||.++|+|+||+||||++++|++...++-
T Consensus       151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv  190 (439)
T PRK06936        151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190 (439)
T ss_pred             ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence            589999 9999999999999999999999999999998864

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.48  E-value=6.3e-05  Score=73.86  Aligned_cols=35  Identities=20%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      .+++|+|||||||||++.+|++...+..|+....+
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~   57 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKN   57 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccc
Confidence            48999999999999999999999988777775543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd04155 Arl3 Arl3 subfamily

Probab=97.45  E-value=0.00015  Score=66.42  Aligned_cols=37  Identities=32%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCC----ccCCcc----eEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI----TPVTGG----DALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~----~~pt~G----~i~i~g~~i  485 (510)
                      .++++|++||||||+++.++|.    ..||.|    .+..+|.++
T Consensus        16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~   60 (173)
T cd04155          16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL   60 (173)
T ss_pred             EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence            4789999999999999999997    668889    788877654

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=97.42  E-value=0.059  Score=52.18  Aligned_cols=144  Identities=13%  Similarity=0.113  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHH
Q 010435          129 GFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELN  208 (510)
Q Consensus       129 ~~~~~~~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s  208 (510)
                      +.......+++|||++.-+.++.+.++...|-++..+...+..++.+.+..+.+.+++.+.  ..+....++..+++...
T Consensus        51 ~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~  128 (232)
T TIGR00025        51 AFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRF--AGGALTALTLGAVIIAL  128 (232)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CCchHHHHHHHHHHHHH
Confidence            3334445689999999999999999999999999987776666555444444444444332  12233333333344444


Q ss_pred             HHHHHHHHHHhcCchhHH---HHHHHHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHH
Q 010435          209 MTGFAFMFSAFISKSSSS---TTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS  278 (510)
Q Consensus       209 ~i~~s~~~S~fF~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~  278 (510)
                      ...++.+++.+....+.+   .....++.+   ...++.-..+|. +..+...+.+..+.|......++....
T Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~---p~~~lSG~~~P~-~~mP~~lq~i~~~~P~t~~~~~~r~~~  197 (232)
T TIGR00025       129 GTALFAALGLVAGGTLQAEIVLAVANLVWF---IFALLSAGLVPL-NLIPTWIKWFVRVQPSSYATEALRQAA  197 (232)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHhheeeec-ccccHHHHHHHHhCcHHHHHHHHHHHH
Confidence            455666677776544333   222111111   000111111222 234566788888999888877776654

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.41  E-value=0.00017  Score=69.70  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l  467 (510)
                      .+.+|++++..++++++|.||||+||||+++++
T Consensus        18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i   50 (222)
T cd03285          18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQI   50 (222)
T ss_pred             eEEeeEEEeecCCeEEEEECCCCCChHHHHHHH
Confidence            479999999999999999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00368 Mg chelatase-related protein

Probab=97.41  E-value=8.9e-05  Score=79.84  Aligned_cols=52  Identities=35%  Similarity=0.428  Sum_probs=48.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      .+++++++.+..|+.+.|+|+||+||||+++.|.|+++|.+|++.+++..+.
T Consensus       199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~  250 (499)
T TIGR00368       199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW  250 (499)
T ss_pred             HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence            5889999999999999999999999999999999999999999999877663

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.37  E-value=0.00016  Score=87.31  Aligned_cols=43  Identities=19%  Similarity=0.413  Sum_probs=36.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      +.++|++|++++||+++|.|+||||||||+..+  +++  .|++.+.
T Consensus       949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~  991 (1809)
T PRK00635        949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYA  991 (1809)
T ss_pred             ccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeee
Confidence            469999999999999999999999999977766  443  8888764

>PRK00098 GTPase RsgA; Reviewed

Probab=97.37  E-value=0.00016  Score=72.98  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=33.3

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      +|++++++|+||+|||||+|.|.|...+..|++..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            58999999999999999999999999999999987

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=97.34  E-value=0.078  Score=51.35  Aligned_cols=137  Identities=9%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHH
Q 010435          134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFA  213 (510)
Q Consensus       134 ~~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s  213 (510)
                      ...++.|||++.-+-+.....+...|+++..+...+..++..+++.++...+. . .........+++.++++++...++
T Consensus        67 ~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~lg  144 (236)
T TIGR01247        67 GISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVA-I-LKPSGVIPTLVLAFIVGVALSGLG  144 (236)
T ss_pred             hhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34567899988777777889999999999999988887776554444333221 1 111233344445566788889999


Q ss_pred             HHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHH
Q 010435          214 FMFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL  277 (510)
Q Consensus       214 ~~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i  277 (510)
                      ++++.++++.+.+..+. .+.....++...    .+|. +..+..++.+..+.|......++...
T Consensus       145 ~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~----~~P~-~~~P~~~~~i~~~~P~~~~~~~~r~~  204 (236)
T TIGR01247       145 VAIAARMDSMEGFQIIMSMLMLPMFFLSGA----FYPI-TTMPAWMQGLAKINPLTYAVDGARYY  204 (236)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHh----hcCH-HhCHHHHHHHHHHCcHHHHHHHHHHH
Confidence            99999888876544332 221111111111    0221 12344567777788877666666543

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.33  E-value=0.00019  Score=68.12  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++++++.+| +.+|+|+|||||||++..|...
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~   44 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIG   44 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence            567788888776 8899999999999999998743

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.32  E-value=0.00016  Score=83.10  Aligned_cols=31  Identities=32%  Similarity=0.594  Sum_probs=29.7

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS  465 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~  465 (510)
                      ..++++|++|++||+++|.|+||||||||++
T Consensus       621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            3699999999999999999999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.31  E-value=0.0002  Score=82.47  Aligned_cols=33  Identities=30%  Similarity=0.509  Sum_probs=31.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l  467 (510)
                      ..++++|++|++||++||.|+||||||||++.+
T Consensus       623 ~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~  655 (943)
T PRK00349        623 NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET  655 (943)
T ss_pred             CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence            369999999999999999999999999999876

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.29  E-value=0.00013  Score=68.93  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ++||.|++||||||+.+.|.+++  ..|.+.+-+.|
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D   34 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD   34 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            47999999999999999999988  34555444433

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.27  E-value=0.00023  Score=85.89  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=34.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHH---------HHcCCccC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS---------CLTGITPV  473 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~---------~l~G~~~p  473 (510)
                      ..++++|+++++||++||.|+||||||||++         .|.|..++
T Consensus       609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~  656 (1809)
T PRK00635        609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCS  656 (1809)
T ss_pred             CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3799999999999999999999999999999         77776443

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.25  E-value=0.00023  Score=63.48  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=28.8

Q ss_pred             EEEecCCCCchhHHHHHHcCC--------------ccCCcceEEEcCeecC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI--------------TPVTGGDALIYGFSIR  486 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~--------------~~pt~G~i~i~g~~i~  486 (510)
                      ++|+|++||||||+++.|+|.              ..++.|.+.+...|+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~   52 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLG   52 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECC
Confidence            579999999999999999998              3344455666666663

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.23  E-value=0.00025  Score=73.61  Aligned_cols=39  Identities=28%  Similarity=0.356  Sum_probs=35.1

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR  486 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~  486 (510)
                      =++||.|++||||||+.+.|.+++.++   .|.+.++|..+.
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt  254 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT  254 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence            378999999999999999999999877   689999998874

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.21  E-value=0.00024  Score=65.88  Aligned_cols=26  Identities=35%  Similarity=0.629  Sum_probs=24.1

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      |++++|+|||||||||+++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.21  E-value=0.00016  Score=74.76  Aligned_cols=40  Identities=28%  Similarity=0.421  Sum_probs=35.0

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      .++++.++.+.+|++++|+||||+|||||+..|++.....
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~  164 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMR  164 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4677888889999999999999999999999999875433

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.18  E-value=0.00026  Score=70.57  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      ++||.|+|||||||+.++|++++++..|.+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~   32 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC   32 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence            47999999999999999999999988775444

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.17  E-value=0.00051  Score=65.75  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             EEEEecCCCCchhHHH-HHHcCCccC-----------------CcceEEEcCeecC
Q 010435          449 LFCLLGPNGAGKTTTI-SCLTGITPV-----------------TGGDALIYGFSIR  486 (510)
Q Consensus       449 i~~llG~nGaGKsTl~-~~l~G~~~p-----------------t~G~i~i~g~~i~  486 (510)
                      .++++|+||+||||++ +.++|..++                 +.|.+.+++.|+.
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~   66 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA   66 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence            3689999999999999 689998765                 4678888888874

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.17  E-value=0.00028  Score=66.75  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      ++++|++|+||||+++.|+|...+++|.+..+.
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~   36 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGV   36 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence            689999999999999999998888777766653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.16  E-value=0.00038  Score=69.37  Aligned_cols=41  Identities=24%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      -+.+.+++|+|++|||||||++.+.+.+....+.+.|.|.-
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~  141 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ  141 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence            34578999999999999999999999988888888888753

>PLN02165 adenylate isopentenyltransferase

Probab=97.15  E-value=0.00034  Score=70.98  Aligned_cols=42  Identities=24%  Similarity=0.465  Sum_probs=35.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCcc---CCcceE-EEcCeecCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDA-LIYGFSIRS  487 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i-~i~g~~i~~  487 (510)
                      +|++++|+|||||||||+...|++.+.   .+.+++ .+.|.||.+
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgT   87 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITT   87 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCccccc
Confidence            467999999999999999999999976   567777 448899854

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.12  E-value=0.0004  Score=63.31  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=24.6

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      ++++.+|+|++|+|||||+|.|.+......|+|.-
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~   68 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISE   68 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence            45899999999999999999999986655566543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.10  E-value=0.00035  Score=65.41  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=27.7

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ..+++++++.+| +++|.|+||+||||++..|.-.+
T Consensus         9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L   43 (202)
T PF13476_consen    9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL   43 (202)
T ss_dssp             TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            467888888775 99999999999999999876544

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.09  E-value=0.0003  Score=68.39  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=36.0

Q ss_pred             EeCCcEEEEecCCCCchhHH-HHHHcCCccCCcceEEEcCee
Q 010435          444 IAKDQLFCLLGPNGAGKTTT-ISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl-~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +++|+++.+.|+||+||||+ ++++.+..++....+++....
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~   62 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL   62 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            68899999999999999999 799999888877888887543

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.08  E-value=0.00055  Score=65.90  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=33.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .+-+|++|+.++|++++|.||||+||||+++++++.
T Consensus        18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~   53 (218)
T cd03286          18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA   53 (218)
T ss_pred             eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence            478999999999999999999999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=97.04  E-value=0.23  Score=48.86  Aligned_cols=136  Identities=13%  Similarity=0.165  Sum_probs=87.9

Q ss_pred             HHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHH
Q 010435          136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (510)
Q Consensus       136 ~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~  215 (510)
                      .+.+|||+|.-+.+..+-++...+-++..+...+..++..+++.++...++..  ...+...++.++++++++...++++
T Consensus        81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~--~~~~~l~~~~~~ll~~l~~~~lg~~  158 (253)
T TIGR01291        81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYI--EWWSLIYILPVIALTGLAFASLSML  158 (253)
T ss_pred             HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999988777766655444433333321  2233444455667788888899999


Q ss_pred             HHHhcCchhHHHHHH-HHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHH
Q 010435          216 FSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS  278 (510)
Q Consensus       216 ~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~  278 (510)
                      +|...++.+.+..+. ++....-++...+    +|. +..+..++.+..+.|......++....
T Consensus       159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~----~P~-~~mP~~lq~i~~~nPlt~~v~~~R~~~  217 (253)
T TIGR01291       159 VAALAPSYAYFAFYQSLVITPMLFLSGVV----FPV-FQLNDVIQGMTHFLPLAHSIDDIRPVM  217 (253)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHh----cCH-HhChHHHHHHHHHCcHHHHHHHHHHHH
Confidence            999887776554332 2221111111111    121 123455677778899888888877664

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR00017 cmk cytidylate kinase

Probab=97.02  E-value=0.00033  Score=67.44  Aligned_cols=55  Identities=18%  Similarity=0.347  Sum_probs=39.5

Q ss_pred             EEEEecCCCCchhHHHHHHc---CCccCCcceEE--------EcCeecCCcccHHHhhccEEEEcc
Q 010435          449 LFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~--------i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      +++|.||+||||||+.+.|+   |+..+++|.++        .+|.+..+.....+.++..|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   69 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFI   69 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEe
Confidence            68999999999999999999   66668899875        445555332334445566666554

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.00  E-value=0.00063  Score=73.56  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      -++||.|+|||||||+.+.|.|.+ |..|.|..+|+.
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence            489999999999999999999997 578999999975

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.99  E-value=0.00044  Score=63.98  Aligned_cols=41  Identities=24%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE-EcCeec
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFSI  485 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~-i~g~~i  485 (510)
                      ++|+++++.|.+|+||||+.+.|.+.+.+..+++. +++.++
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            57999999999999999999999999987666665 676443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.99  E-value=0.00028  Score=71.37  Aligned_cols=50  Identities=16%  Similarity=0.189  Sum_probs=42.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .++++++....++++++++|++||||||+++.+.+.......++.+-+.|
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D   71 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD   71 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            58999999999999999999999999999999999876655566554443

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.95  E-value=0.00036  Score=65.05  Aligned_cols=35  Identities=29%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CcEEEEecCCCCchhHHHHHHc---CCccCCcceEEEc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIY  481 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~i~  481 (510)
                      ..+++++|++||||||+.+.|+   |+..++.|++...
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~   40 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRA   40 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence            4689999999999999999999   9998988876543

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.95  E-value=0.00035  Score=69.30  Aligned_cols=49  Identities=24%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             eeeeeeEEEe-------CCcEEEEecCCCCchhHHHHHHcCCccC---CcceEEEcCee
Q 010435          436 AIKGLWVNIA-------KDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFS  484 (510)
Q Consensus       436 av~~lsl~v~-------~gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i~g~~  484 (510)
                      +++++++.+.       +|+.++++|+||+||||++++|++.+..   ..|-+..+++.
T Consensus        57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            4666666665       5599999999999999999999998643   34555555543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.93  E-value=0.0005  Score=61.87  Aligned_cols=28  Identities=25%  Similarity=0.340  Sum_probs=24.6

Q ss_pred             EEEecCCCCchhHHHHHHc--CCccCCcce
Q 010435          450 FCLLGPNGAGKTTTISCLT--GITPVTGGD  477 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~--G~~~pt~G~  477 (510)
                      ++++|++|||||||++.|+  +..++.+|+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~   31 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKT   31 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence            5799999999999999999  777777766

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=96.92  E-value=0.0011  Score=68.24  Aligned_cols=42  Identities=31%  Similarity=0.494  Sum_probs=38.5

Q ss_pred             ceeeeeeEEEeCC-----cEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       435 ~av~~lsl~v~~g-----ei~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      .-+.+..|.|+.|     |++..||.||-||||+++|++|.++|+.|
T Consensus       350 k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~  396 (592)
T KOG0063|consen  350 KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG  396 (592)
T ss_pred             eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence            4688888999988     68999999999999999999999999987

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.90  E-value=0.00064  Score=64.87  Aligned_cols=28  Identities=29%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .++.+++|.|++||||||+.+.|.+.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678999999999999999999999883

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=96.90  E-value=0.0009  Score=63.62  Aligned_cols=31  Identities=19%  Similarity=0.208  Sum_probs=25.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc-cCCcceEE
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT-PVTGGDAL  479 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~-~pt~G~i~  479 (510)
                      .+|++||+|+|||||+++|+|.. ....+++.
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~   33 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELE   33 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEE
Confidence            47999999999999999999984 34445544

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=96.87  E-value=0.001  Score=71.52  Aligned_cols=45  Identities=22%  Similarity=0.456  Sum_probs=40.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc---CCccCCcceEEE
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALI  480 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~i  480 (510)
                      +.+||+.+.. +|.+++|.|++||||||+.+.|+   |....+.|..|-
T Consensus       273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR  320 (512)
T PRK13477        273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR  320 (512)
T ss_pred             EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence            6899999987 88999999999999999999999   777777887764

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=96.87  E-value=0.001  Score=70.17  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~  475 (510)
                      .+=|.-+.+.+||.++|+|+||+||||++++|++...|+.
T Consensus       147 r~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~  186 (442)
T PRK08927        147 RALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV  186 (442)
T ss_pred             EEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence            3446678999999999999999999999999999998864

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.84  E-value=0.0012  Score=64.93  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=35.3

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      |+|.+ +.+.+||..+|+|++|+||||+++.+.+......+++
T Consensus         6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv   47 (249)
T cd01128           6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEV   47 (249)
T ss_pred             heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCe
Confidence            55544 5889999999999999999999999999988764433

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PTZ00035 Rad51 protein; Provisional

Probab=96.83  E-value=0.00057  Score=70.15  Aligned_cols=43  Identities=21%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCcc-C-----CcceE-EEcCeec
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP-V-----TGGDA-LIYGFSI  485 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~-p-----t~G~i-~i~g~~i  485 (510)
                      .+++|+++.|.|++|+||||+...++.... |     ..|.+ +|++...
T Consensus       114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~  163 (337)
T PTZ00035        114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT  163 (337)
T ss_pred             CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence            699999999999999999999998886554 3     45766 8888764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.77  E-value=0.0019  Score=55.84  Aligned_cols=40  Identities=33%  Similarity=0.462  Sum_probs=33.4

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcCeec
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSI  485 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g~~i  485 (510)
                      +++.+.|.||+|+||||+++.|++...... +-++++....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            367899999999999999999999988765 6777776543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01069 mutS2 MutS2 family protein

Probab=96.77  E-value=0.00062  Score=77.20  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=32.4

Q ss_pred             eeeEEEeCC-cEEEEecCCCCchhHHHHHHcCC-ccCCcc
Q 010435          439 GLWVNIAKD-QLFCLLGPNGAGKTTTISCLTGI-TPVTGG  476 (510)
Q Consensus       439 ~lsl~v~~g-ei~~llG~nGaGKsTl~~~l~G~-~~pt~G  476 (510)
                      .+|+.+.++ ++++|.||||+||||++++++|. +.+..|
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G  352 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG  352 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence            578888877 99999999999999999999998 444454

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK07429 phosphoribulokinase; Provisional

Probab=96.75  E-value=0.0013  Score=67.30  Aligned_cols=52  Identities=21%  Similarity=0.262  Sum_probs=37.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCeecCCcccHHHhhccEEEEccC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      ++||.|++||||||+.+.|++++.++.+.+ ..++.  .. .+ .+.|+..|+.+++
T Consensus        10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~--~~-~~-~~~r~~~g~~~l~   62 (327)
T PRK07429         10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY--HS-YD-RKQRKELGITALD   62 (327)
T ss_pred             EEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc--cc-CC-HHHHHhcCCcccC
Confidence            889999999999999999999999887654 33333  11 12 2335667776654

>TIGR01248 drrC daunorubicin resistance protein C

Probab=96.75  E-value=0.14  Score=46.34  Aligned_cols=136  Identities=15%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHH
Q 010435          135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAF  214 (510)
Q Consensus       135 ~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~  214 (510)
                      ..++.|||++.-+.++.+-++.+.+.++..+.+.+..++.+.++++++..++.+.-  .++...+..+.+..+..++++.
T Consensus        10 ~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~g~~~~--~~~~~~~~~~~~~~l~~~~f~~   87 (152)
T TIGR01248        10 IDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALALGFRFR--NGVAAALLFLLIPSIFGIAFAA   87 (152)
T ss_pred             HHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999998888887766666655554432  2333233333333333334444


Q ss_pred             HHHHh--cCchhHHHHHH-HHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHH
Q 010435          215 MFSAF--ISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL  277 (510)
Q Consensus       215 ~~S~f--F~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i  277 (510)
                      +.+.+  ..+...+.... .+.+...++..    ..+|. +..+..++.+..+.|-.....++..+
T Consensus        88 l~~~~a~~~~~~~~~~~~~~v~~pl~flsg----~~~P~-~~mP~wlq~ia~~~Plt~~~~~~R~~  148 (152)
T TIGR01248        88 LVMAMALRKEGRFAMEALELAQAAAAFLNP----GATPI-KLFPDWAQPLIAHQPISPAIEACADL  148 (152)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhh----hhcCH-HhCcHHHHHHHhhCCccHHHHHHHHH
Confidence            33332  23333332221 11111111111    11221 23455667777788877777666554

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.74  E-value=0.0011  Score=63.59  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=25.6

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      +=+|++++=..+.+..|.||||+||||+++.+.
T Consensus        18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             EcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence            345555543223789999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK15494 era GTPase Era; Provisional

Probab=96.71  E-value=0.0012  Score=67.97  Aligned_cols=52  Identities=13%  Similarity=0.229  Sum_probs=43.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCc-------EEEEecCCCCchhHHHHHHcCCc
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQ-------LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~ge-------i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++.++++.+|+...              .+++.++++++.|+       .++++|..|+|||||++.|.|--
T Consensus        18 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k   76 (339)
T PRK15494         18 DTEALAAAVREDAST--------------GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK   76 (339)
T ss_pred             ccccccccccCCCCc--------------ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence            456677777887431              48999999999999       99999999999999999998864

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.70  E-value=0.0015  Score=67.14  Aligned_cols=41  Identities=27%  Similarity=0.293  Sum_probs=36.4

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      ..++.+..+.+.|++||||||+++.|.+.++++.+-+.|..
T Consensus       157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd  197 (344)
T PRK13851        157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED  197 (344)
T ss_pred             HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence            34677888999999999999999999999999888888764

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=96.65  E-value=0.09  Score=51.40  Aligned_cols=100  Identities=15%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccccccCCh---HHHHHHHHHHH
Q 010435          133 QISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG---MMFQFDFFLNNSF---AVLFLLFFLFE  206 (510)
Q Consensus       133 ~~~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~---~~~~~~~f~~~~~---~~l~ll~~l~~  206 (510)
                      .+..+++|||+|.-|.+....++.+.+.++-++...+..++..+..++..   ..+.... .+.+.   ....+..++++
T Consensus        69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  147 (240)
T TIGR03518        69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPV-GNLDIGSTFGSYIGLLLLG  147 (240)
T ss_pred             HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccccHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999987766554432111111   1121111 11122   22344456788


Q ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010435          207 LNMTGFAFMFSAFISKSSSSTTIGFSV  233 (510)
Q Consensus       207 ~s~i~~s~~~S~fF~~~~~a~~~~~~~  233 (510)
                      .+.++.+.++|++-++...|...++.+
T Consensus       148 ~~~~aig~~iSsl~~~q~~a~~~~~~~  174 (240)
T TIGR03518       148 SVYTAIGLFASSLTENQIVAFIIAVFL  174 (240)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            889999999999866666565444433

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.58  E-value=0.0017  Score=61.49  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i  485 (510)
                      ++.+.||+||||||+++.|.+..++. .|.+..-+.++
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~   40 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI   40 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence            57899999999999999988888754 57776655554

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	510
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		9e-06
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		4e-04
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		4e-04
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		6e-04
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		7e-04
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		8e-04

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
           HAIKG+ + + + Q+  L+G NGAGKTTT+S + G+     G  +  G  I +  +    
Sbjct: 20  HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 495 QKSIGVCPQ 503
           +  I + P+
Sbjct: 80  RXGIALVPE 88

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K +  +I   Q   L+GP G+GKTT ++ L     V  G  L+ G  IR  +  ++++
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLR 428
Query: 496 KSIGVCPQVT-LFS 508
            SIG+  Q T LFS
Sbjct: 429 SSIGIVLQDTILFS 442

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VSMTNIQ 495
           +KG+ V+I + ++  ++GP+G+GK+T + CL  +     G+ +I G ++++   ++  ++
Sbjct: 19  LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 78
Query: 496 KSIG-VCPQVTLFSYL 510
           + +G V  +  LF ++
Sbjct: 79  EEVGMVFQRFNLFPHM 94

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VSMTNIQ 495
           +KG+ V+I + ++  ++GP+G+GK+T + CL  +     G+ +I G ++++   ++  ++
Sbjct: 40  LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 496 KSIG-VCPQVTLFSYL 510
           + +G V  +  LF ++
Sbjct: 100 EEVGMVFQRFNLFPHM 115

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
           ++      +KG+   I + ++F L+GPNGAGKTTT+  ++ +   + G   ++G ++
Sbjct: 23  KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV 79

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR-SSVSMTN 493
           HA+KG+ +NI + ++  +LG NG GK+T      GI   + G  L     I  S   +  
Sbjct: 22  HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81
Query: 494 IQKSIGVC---PQVTLFS 508
           +++SIG+    P   LFS
Sbjct: 82  LRESIGIVFQDPDNQLFS 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-18
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-17
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	7e-14
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-09
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-08
1ji0_A	240	ABC transporter; ATP binding protein, structural g	2e-08
1g6h_A	257	High-affinity branched-chain amino acid transport	8e-08
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	5e-07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	7e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	4e-06
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	7e-06
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-05
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	6e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	7e-05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	8e-05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	9e-05
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-04
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	3e-04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	4e-04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	6e-04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	7e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 18/106 (16%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           AV ++ L K                      +KG+   I + ++F L+GPNGAGKTTT+ 
Sbjct: 15  AVVVKDLRKRIGKKE---------------ILKGISFEIEEGEIFGLIGPNGAGKTTTLR 59

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-VTLFSYL 510
            ++ +   + G   ++G ++        ++K I   P+    +  +
Sbjct: 60  IISTLIKPSSGIVTVFGKNVVE--EPHEVRKLISYLPEEAGAYRNM 103

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 22/98 (22%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++IR L   +                    ++ + + I K  +    GPNG GKTT + 
Sbjct: 10  KLEIRDLSVGYDKP----------------VLERITMTIEKGNVVNFHGPNGIGKTTLLK 53

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
            ++       G+ +  G  I        ++  I   P+
Sbjct: 54  TISTYLKPLKGEIIYNGVPIT------KVKGKIFFLPE 85

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 401 PDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGK 460
              ++ +Q+  + +   G                  +K +   IAK   + L G NGAGK
Sbjct: 16  RGSHMLIQLDQIGRMKQGKT---------------ILKKISWQIAKGDKWILYGLNGAGK 60

Query: 461 TTTISCLTGITPVTGGDALIYGFSI-RSSVSMTNIQKSIGVCPQ 503
           TT ++ L    P T G   ++G    +   S   +++ IG    
Sbjct: 61  TTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH 104

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 19/98 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +Q++ +  T  G           K     +++ + + +   +   +LGPNG+GKTT +  
Sbjct: 2   IQLKNVGITLSG-----------KGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRA 49

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504
           ++G+ P   G+  I G      + +  I+  I     +
Sbjct: 50  ISGLLP-YSGNIFING------MEVRKIRNYIRYSTNL 80

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 14/86 (16%)

Query: 397 RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPN 456
                  ++ ++  G+ K +PG                 +++G+   I + ++  LLGP+
Sbjct: 5   HHHHHHGSMTIEFVGVEKIYPGG--------------ARSVRGVSFQIREGEMVGLLGPS 50

Query: 457 GAGKTTTISCLTGITPVTGGDALIYG 482
           G+GKTT +  + G+   T GD  I G
Sbjct: 51  GSGKTTILRLIAGLERPTKGDVWIGG 76

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 15/77 (19%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           A+ I  L K+F  T                 +  + +++   ++  ++G +G GKTT + 
Sbjct: 4   ALHIGHLSKSFQNTP---------------VLNDISLSLDPGEILFIIGASGCGKTTLLR 48

Query: 466 CLTGITPVTGGDALIYG 482
           CL G      G+  + G
Sbjct: 49  CLAGFEQPDSGEISLSG 65

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
           HAIKG+ + + + Q+  L+G NGAGKTTT+S + G+     G  +  G  I
Sbjct: 20  HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           +   +VK F   +               A+ G+ +++ K  +  ++GPNG+GK+T I+ +
Sbjct: 9   RTENIVKYFGEFK---------------ALDGVSISVNKGDVTLIIGPNGSGKSTLINVI 53

Query: 468 TGITPVTGGDALIYGFSI 485
           TG      G        I
Sbjct: 54  TGFLKADEGRVYFENKDI 71

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 28/100 (28%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           N A+ +  L   +     +               + L  ++ K  +  +LG NG GK+T 
Sbjct: 2   NKALSVENLGFYYQAENFL--------------FQQLNFDLNKGDILAVLGQNGCGKSTL 47

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           +  L GI     G        I        + +SIG  PQ
Sbjct: 48  LDLLLGIHRPIQG-------KIE-------VYQSIGFVPQ 73

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I  L + +                   ++  L + +   + F +LGP GAGKT  +  
Sbjct: 2   IEIESLSRKWKNF----------------SLDNLSLKVESGEYFVILGPTGAGKTLFLEL 45

Query: 467 LTGITPVTGGDALIYGFSI 485
           + G      G  L+ G  +
Sbjct: 46  IAGFHVPDSGRILLDGKDV 64

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  L   +   ++  L+GPNGAGK+T ++ + G+T    G     G  +  + S T +  
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPL-EAWSATKLAL 73

Query: 497 SIGVCPQ 503
                 Q
Sbjct: 74  HRAYLSQ 80

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V + ++ + K F                   A+  + +NI   + F +LGP+GAGKTT +
Sbjct: 2   VRIIVKNVSKVFKK-------------GKVVALDNVNINIENGERFGILGPSGAGKTTFM 48

Query: 465 SCLTGITPVTGGDALI 480
             + G+   + G+   
Sbjct: 49  RIIAGLDVPSTGELYF 64

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VSMTN 493
           HA+KG+ +NI + ++  +LG NG GK+T      GI   + G  L     I  S   +  
Sbjct: 22  HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81

Query: 494 IQKSIGV 500
           +++SIG+
Sbjct: 82  LRESIGI 88

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 17/90 (18%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + +  L K+F                    +KG+ V+I + ++  ++GP+G+GK+T + C
Sbjct: 25  IDVHQLKKSF---------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRC 69

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           L  +     G+ +I G ++++    TN+ K
Sbjct: 70  LNLLEDFDEGEIIIDGINLKA--KDTNLNK 97

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + K F            Q T    A+  + +++   Q++ ++G +GAGK+T I C
Sbjct: 25  IKLSNITKVFH-----------QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 73

Query: 467 LTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIG 499
           +  +   T G  L+ G  +   S   +T  ++ IG
Sbjct: 74  VNLLERPTEGSVLVDGQELTTLSESELTKARRQIG 108

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-----FSIRSSV 489
            A++ + + I + +   + G  G+GK+T +  + G+   T GD L  G     + IR ++
Sbjct: 21  KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80

Query: 490 SM 491
            +
Sbjct: 81  GI 82

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  +VK F                   A+  + + I   +   LLGP+G+GK+T +  
Sbjct: 4   IKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYT 48

Query: 467 LTGITPVTGGDALI 480
           + GI   T G    
Sbjct: 49  IAGIYKPTSGKIYF 62

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 8/120 (6%)

Query: 357 GNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTF 416
           G     G +          E I    +  +  EN+  +   E++              + 
Sbjct: 296 GVPSVYGVV---TLPASVREGINIFLDGHIPAENL--RFRTEALQFRIADATEDLQNDSA 350

Query: 417 PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
                     K Q       +       +  ++  ++G NG GKTT I  L G      G
Sbjct: 351 SRAFSYPSLKKTQGD---FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 24/79 (30%)

Query: 422 IGCCCKCQKTSPYHA--IKGLWVNIAKD---------------------QLFCLLGPNGA 458
           IGC   C K  P+ A  I  L  N+                        Q+  L+G NG 
Sbjct: 56  IGCGI-CVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGI 114

Query: 459 GKTTTISCLTGITPVTGGD 477
           GK+T +  L G      G 
Sbjct: 115 GKSTALKILAGKQKPNLGR 133

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
           L++EN+   + R          +   + +            +  K      ++     I 
Sbjct: 329 LKDENV---RFRPYEIRFTKLSERVDVERETLVEYP-----RLVKDYGSFKLEVEPGEIR 380

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           K ++  ++GPNG GKTT +  L G+   T G 
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  L K F                   A+  L + I   +   LLGP+G GKTTT+  
Sbjct: 12  VKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRM 56

Query: 467 LTGITPVTGGDALI 480
           + G+   T G    
Sbjct: 57  IAGLEEPTEGRIYF 70

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 43.2 bits (103), Expect = 9e-05
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            ++ +      + +    GP+G GK+T  S L      T G+  I G  I  ++S+ N +
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID-NISLENWR 75

Query: 496 KSIGVCPQ-VTLFS 508
             IG   Q   + +
Sbjct: 76  SQIGFVSQDSAIMA 89

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  + K F                   A++ + + +   +   LLGP+G GKTTT+  
Sbjct: 4   VRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRM 48

Query: 467 LTGITPVTGGDALI 480
           + G+   + G   I
Sbjct: 49  IAGLEEPSRGQIYI 62

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 10/131 (7%)

Query: 357 GNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIR-ESIPDPNVAVQIRGLVKT 415
           G     G + S   +     +        L  ENM   +IR + I      V    L K 
Sbjct: 212 GESSVYGRV-SKSYAARVGINNFLKGY--LPAENM---KIRPDEIKFMLKEVSDLDLSKD 265

Query: 416 FPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475
                K     K  K      +        + ++  +LGPNG GKTT    L G      
Sbjct: 266 LKTKMKWT---KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE 322

Query: 476 GDALIYGFSIR 486
           G        + 
Sbjct: 323 GSVTPEKQILS 333

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 15/83 (18%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
              + +  L K +                 +  +KG+ +      +  ++G +G+GK+T 
Sbjct: 4   ENKLHVIDLHKRY---------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTF 48

Query: 464 ISCLTGITPVTGGDALIYGFSIR 486
           + C+  +   + G  ++ G +I 
Sbjct: 49  LRCINFLEKPSEGAIIVNGQNIN 71

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  + ++I + ++  ++G +G+GK+T    +        G  LI G  +        +++
Sbjct: 25  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA-LADPNWLRR 83

Query: 497 SIGVCPQ-VTLFS 508
            +GV  Q   L +
Sbjct: 84  QVGVVLQDNVLLN 96

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  L K F                   A+ G+   +   +   LLGP+G GKTTT+  
Sbjct: 4   IRVVNLKKYFGKV---------------KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLM 48

Query: 467 LTGITPVTGGDALI 480
           L GI   T G+   
Sbjct: 49  LAGIYKPTSGEIYF 62

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 442 VNIAKDQ-LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           V+    +    LLGP GAGK+  +  + GI     G+  + G
Sbjct: 18  VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            ++ +   +   Q   L+GP+GAGK+T +  L     ++ G   I G  I   V+  +++
Sbjct: 69  TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS-QVTQASLR 127

Query: 496 KSIGVCPQ-VTLFS 508
             IGV PQ   LF+
Sbjct: 128 SHIGVVPQDTVLFN 141

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A++ + + I   +   L+G +G+GK+T  S +T    +  G  L+ G  +R   ++ +++
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR-EYTLASLR 416

Query: 496 KSIGVCPQ-VTLFS 508
             + +  Q V LF+
Sbjct: 417 NQVALVSQNVHLFN 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 72/561 (12%), Positives = 141/561 (25%), Gaps = 219/561 (39%)

Query: 10  PSSKVMSF-RTAAEVD-DWLYSNPMRCPGALHFVDRNAT--TISYGIQTNSTPIEMRGR- 64
               V  F      ++  +L S        +    R  +  T  Y        IE R R 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMS-------PIKTEQRQPSMMTRMY--------IEQRDRL 119

Query: 65  YED-PTF-KFQIP------------LQLAAEREIARSLVGDPNF--SWVVG--LKEFA-- 104
           Y D   F K+ +             L+L   + +   + G      +WV       +   
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQ 177

Query: 105 -HPPGEIF------------------SAVARIGPTFFLAVAMFGFVFQISSLVTEKELKL 145
                +IF                    + +I P +    +       I   +   + +L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAEL 234

Query: 146 RQVMTMMGLYDSAY------WLSWLTWEG------TLVL---------LSSLFIVIFGMM 184
           R+++     Y++          +   W         L+          LS+       + 
Sbjct: 235 RRLLKSK-PYENCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 185 FQFDFFLNNSFAVLFLLFFLFELNM----------TGFAF---MFSAFISKSSS------ 225
                   +    L L +    L+           T       + +  I    +      
Sbjct: 293 HHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 226 -STTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLL--AEALQLL--SDA 280
                  +  I   L  L          ++   +  + S+FPP+       L L+     
Sbjct: 349 HVNCDKLTTIIESSLNVL-------EPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVI 400

Query: 281 TETPQDIGISWSRRAECAPNDTECVITINDIYIWLVAT---------------------- 318
                 +     + +       E  I+I  IY+ L                         
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 319 -----------FFVWFI---LA-------------IYLDNIIPNAAGVRKSTFYFLKPGY 351
                      +F   I   L              ++LD             F FL+   
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-------------FRFLE--- 504

Query: 352 WTGKGGNKIE-EGSICSCVGSVPPM--------EHITPDD-------EDVLE-----EEN 390
                  KI  + +  +  GS+            +I  +D         +L+     EEN
Sbjct: 505 ------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 391 MVKQQ----IRESIPDPNVAV 407
           ++  +    +R ++   + A+
Sbjct: 559 LICSKYTDLLRIALMAEDEAI 579

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
              E +    +    P+P     ++   K      K+         +    I  +    +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAI---VKVTNMEFQYPGTSKPQITDINFQCS 697

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
                 ++GPNGAGK+T I+ LTG    T G
Sbjct: 698 LSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+  +  +I + +   L+G +G+GK+T  +  T    V  G   + G  +R    +TN++
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR-DYKLTNLR 416

Query: 496 KSIGVCPQ-VTLFS 508
           +   +  Q V LF+
Sbjct: 417 RHFALVSQNVHLFN 430

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.79
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.78
1g6h_A	257	High-affinity branched-chain amino acid transport	99.78
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.78
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.78
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.77
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.77
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.77
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.77
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.77
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.77
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.76
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.76
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.75
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.75
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.75
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.74
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.74
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.73
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.73
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.73
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.73
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.73
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.73
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.72
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.72
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.72
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.72
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.7
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.69
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.68
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.68
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.68
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.68
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.67
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.67
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.67
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.66
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.66
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.66
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.62
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.59
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.57
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.56
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.55
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.4
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.39
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.27
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.22
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.22
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.21
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.18
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.15
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.14
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.1
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.07
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.05
2og2_A	359	Putative signal recognition particle receptor; nuc	99.05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.02
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.0
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.99
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.99
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.99
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.98
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.95
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.94
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.92
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.92
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.91
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.9
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.9
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.88
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.86
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.84
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.84
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.84
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.82
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.82
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.77
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.74
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.74
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.73
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.72
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.72
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.69
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.69
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.64
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.58
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.58
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.57
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.55
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.54
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.52
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.51
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.5
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.49
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.45
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.43
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.41
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.39
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.38
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.36
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.35
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.31
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.3
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.28
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.27
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.25
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.23
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.2
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.19
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.15
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.15
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.14
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.07
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.06
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.06
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.06
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.04
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.03
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.02
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.02
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.02
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.01
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.99
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.97
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.97
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.96
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.96
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.96
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.95
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.95
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.95
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.93
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.93
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.91
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.89
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.89
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.87
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.86
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.85
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.85
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.84
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.83
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.81
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.81
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.81
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.74
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.72
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.71
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.7
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.7
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.66
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.66
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.66
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.63
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.55
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.51
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.49
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.48
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.34
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.33
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.3
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.21
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.19
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.15
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.14
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.12
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.02
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.01
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.01
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.0
3ice_A	422	Transcription termination factor RHO; transcriptio	96.99
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.97
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.94
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.91
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.9
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.82
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.78
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.7
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.65
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.62
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.56
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.55
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.53
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.51
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.41
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.33
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.32
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.24
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.19
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.14
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.07
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.98
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.96
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.88
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.77
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.76
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.64
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.59
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.55
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.51
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.47
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.46
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.42
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.39
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.39
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.09
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.98
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.97
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.92
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	94.88
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.86
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.85
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.83
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	94.79
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	94.79
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.77
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.75
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.7
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.58
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	94.54
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.47
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.46
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	94.44
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.4
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.4
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.35
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.32
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.3
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.28
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.28
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.24
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.14
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.13
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.1
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.07
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.06
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.06
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.06
1via_A	175	Shikimate kinase; structural genomics, transferase	94.04
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.02
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.01
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.99
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.98
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.96
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.95
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	93.83
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.81
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.8
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.79
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.74
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.7
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.66
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.64
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.55
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.53
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.48
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.48
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.43
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.42
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.4
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.39
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.37
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.37
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.32
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.32
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.31
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.28
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.28
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.26
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.24
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.23
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.22
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.2
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	93.2
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.15
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.14
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	93.12
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	93.11
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.11
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.01
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	92.99
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.94
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	92.88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.86
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	92.86
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	92.85
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	92.84
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	92.81
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	92.74
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.74
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.73
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	92.7
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.69
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.67
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	92.65
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.62
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.6
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	92.58
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	92.56
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	92.56
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.55
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	92.5
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.5
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	92.46
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	92.42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	92.37
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.36
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.34
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.34
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	92.33
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	92.23
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.23
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.22
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	92.21
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.21
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.2
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.18
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.15
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.13
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.02
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.98
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.98
3llu_A	196	RAS-related GTP-binding protein C; structural geno	91.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.96
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	91.95
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	91.91
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	91.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.91
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	91.91
3bos_A	242	Putative DNA replication factor; P-loop containing	91.88
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.85
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	91.78
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	91.72
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.72
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.69
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.68
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.66
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	91.64
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.63
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.59
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	91.57
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	91.56
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.54
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	91.49
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.46
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.45
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	91.44
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.44
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.43
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.42
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.37
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	91.37
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.35
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.31
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.31
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.31
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.17
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.17
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	91.16
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	91.11
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	91.09
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	91.07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.06
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	91.03
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	91.02
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.01
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	90.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	90.94
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	90.9
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	90.87
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	90.87
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	90.82
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.79
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	90.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	90.7
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	90.7
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	90.66
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	90.33
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	90.31
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.28
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	90.27
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	90.18
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.17
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.16
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	90.05
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	90.0
2hf9_A	226	Probable hydrogenase nickel incorporation protein	89.96
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	89.86
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.84
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.8
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	89.68
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	89.67
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	89.63
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	89.61
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	89.6
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	89.56
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.54
1u94_A	356	RECA protein, recombinase A; homologous recombinat	89.53
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.53
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	89.5
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	89.43
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	89.32
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	89.18
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	89.13
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	89.08
1wxq_A	397	GTP-binding protein; structural genomics, riken st	89.03
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	88.97
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	88.93
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	88.79
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	88.79
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	88.78
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	88.67
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	88.27
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	87.97
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	87.77
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	87.75
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	87.73
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.58
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	87.65
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	87.54
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	87.51
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	87.38
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	87.28
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	87.26
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	87.26
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	87.24
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	87.2
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	87.07
3l0o_A	427	Transcription termination factor RHO; helicase, RH	86.68
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	86.65
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	86.6
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	86.4
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	86.23
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	86.13
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	85.95
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	85.8
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	85.64
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	85.56
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	85.55
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	85.25
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	85.01
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	84.94
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	84.76
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	84.7
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	84.65
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	84.64
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	84.45
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	84.34
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	84.3
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	84.05
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	83.81
2xxa_A	433	Signal recognition particle protein; protein trans	83.81
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	83.7
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	83.7
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	83.66
2qgz_A	308	Helicase loader, putative primosome component; str	83.4
3pvs_A	447	Replication-associated recombination protein A; ma	83.29
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	83.23
2chg_A	226	Replication factor C small subunit; DNA-binding pr	83.22
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	83.09
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	83.06

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.79  E-value=1.7e-19  Score=183.98  Aligned_cols=93  Identities=22%  Similarity=0.415  Sum_probs=79.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++||+|.|+++.           +.+.||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.
T Consensus        22 ~~mi~v~~ls~~y~~~~-----------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~   90 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGT-----------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ   90 (366)
T ss_dssp             -CCEEEEEEEEEEECSS-----------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred             CceEEEEeEEEEeCCCC-----------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence            45799999999996431           1346999999999999999999999999999999999999999999999999


Q ss_pred             ecCCc--ccHHHhhccEEEEccCCCc
Q 010435          484 SIRSS--VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~--~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++...  .+..+.|+.+||+||+..|
T Consensus        91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l  116 (366)
T 3tui_C           91 ELTTLSESELTKARRQIGMIFQHFNL  116 (366)
T ss_dssp             ECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred             ECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence            98532  2344568899999998654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.79  E-value=2.7e-19  Score=176.71  Aligned_cols=87  Identities=26%  Similarity=0.430  Sum_probs=76.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|++.              ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         6 ~~l~i~~ls~~y~~~--------------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~   71 (275)
T 3gfo_A            6 YILKVEELNYNYSDG--------------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP   71 (275)
T ss_dssp             EEEEEEEEEEECTTS--------------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             cEEEEEEEEEEECCC--------------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence            469999999999643              149999999999999999999999999999999999999999999999999


Q ss_pred             cCC-cccHHHhhccEEEEccCC
Q 010435          485 IRS-SVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~-~~~~~~~r~~iG~cpQ~~  505 (510)
                      +.. ..+..+.|+.+||+||+.
T Consensus        72 i~~~~~~~~~~~~~ig~v~Q~~   93 (275)
T 3gfo_A           72 IDYSRKGIMKLRESIGIVFQDP   93 (275)
T ss_dssp             CCCSHHHHHHHHHSEEEECSSG
T ss_pred             CCcccccHHHHhCcEEEEEcCc
Confidence            841 233556789999999974

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.78  E-value=4.4e-19  Score=172.03  Aligned_cols=88  Identities=27%  Similarity=0.490  Sum_probs=75.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +.++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   69 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD   69 (240)
T ss_dssp             EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             ceEEEEeEEEEECCe---------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence            468999999999542               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +......+..|+.+||+||+..+
T Consensus        70 ~~~~~~~~~~~~~i~~v~q~~~l   92 (240)
T 1ji0_A           70 ITNKPAHVINRMGIALVPEGRRI   92 (240)
T ss_dssp             CTTCCHHHHHHTTEEEECSSCCC
T ss_pred             CCCCCHHHHHhCCEEEEecCCcc
Confidence            85322222345679999998644

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.78  E-value=3e-19  Score=174.97  Aligned_cols=88  Identities=23%  Similarity=0.314  Sum_probs=76.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         6 ~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~   70 (257)
T 1g6h_A            6 EILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD   70 (257)
T ss_dssp             EEEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             cEEEEeeeEEEECCE---------------eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence            469999999999542               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +......+..|+.+||+||+..+
T Consensus        71 ~~~~~~~~~~~~~i~~v~q~~~l   93 (257)
T 1g6h_A           71 ITNKEPAELYHYGIVRTFQTPQP   93 (257)
T ss_dssp             CTTCCHHHHHHHTEEECCCCCGG
T ss_pred             CCCCCHHHHHhCCEEEEccCCcc
Confidence            85322234467789999998643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.78  E-value=4.4e-19  Score=173.57  Aligned_cols=87  Identities=28%  Similarity=0.444  Sum_probs=77.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      -..++++||+|.|++.               .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus        13 ~~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~   77 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK   77 (256)
T ss_dssp             -CCEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             CCeEEEEEEEEEECCE---------------EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence            3579999999999532               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++..  ...+.|+.+||+||...+
T Consensus        78 ~~~~--~~~~~~~~i~~v~q~~~l   99 (256)
T 1vpl_A           78 NVVE--EPHEVRKLISYLPEEAGA   99 (256)
T ss_dssp             ETTT--CHHHHHTTEEEECTTCCC
T ss_pred             ECCc--cHHHHhhcEEEEcCCCCC
Confidence            9853  345678899999998654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.78  E-value=4.3e-19  Score=174.20  Aligned_cols=87  Identities=23%  Similarity=0.538  Sum_probs=76.3

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus        24 ~l~i~~l~~~y~~~---------------~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i   88 (263)
T 2olj_A           24 MIDVHQLKKSFGSL---------------EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL   88 (263)
T ss_dssp             SEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEES
T ss_pred             eEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence            59999999999532               599999999999999999999999999999999999999999999999998


Q ss_pred             C-CcccHHHhhccEEEEccCCCc
Q 010435          486 R-SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~-~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . +..+..+.|+.+||+||+..+
T Consensus        89 ~~~~~~~~~~~~~i~~v~Q~~~l  111 (263)
T 2olj_A           89 KAKDTNLNKVREEVGMVFQRFNL  111 (263)
T ss_dssp             SSTTCCHHHHHHHEEEECSSCCC
T ss_pred             CCccccHHHHhCcEEEEeCCCcC
Confidence            4 112345668889999998644

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.77  E-value=9.2e-19  Score=172.27  Aligned_cols=87  Identities=23%  Similarity=0.366  Sum_probs=78.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|++.               .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        10 ~~l~~~~l~~~~~~~---------------~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~   74 (266)
T 4g1u_C           10 ALLEASHLHYHVQQQ---------------ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN   74 (266)
T ss_dssp             CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred             ceEEEEeEEEEeCCe---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            479999999999642               69999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.. ...++.++.+||+||+..+
T Consensus        75 ~~~-~~~~~~~~~i~~v~q~~~~   96 (266)
T 4g1u_C           75 LNS-WQPKALARTRAVMRQYSEL   96 (266)
T ss_dssp             TTT-SCHHHHHHHEEEECSCCCC
T ss_pred             CCc-CCHHHHhheEEEEecCCcc
Confidence            864 3456677889999997654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.77  E-value=9.4e-19  Score=170.42  Aligned_cols=89  Identities=16%  Similarity=0.294  Sum_probs=77.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|++.             ...+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         6 ~~~~~~~l~~~y~~~-------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~   72 (247)
T 2ff7_A            6 HDITFRNIRFRYKPD-------------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD   72 (247)
T ss_dssp             EEEEEEEEEEESSTT-------------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             CceeEEEEEEEeCCC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            358999999999421             1159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.. .+..++|+.+||+||...+
T Consensus        73 ~~~-~~~~~~~~~i~~v~Q~~~l   94 (247)
T 2ff7_A           73 LAL-ADPNWLRRQVGVVLQDNVL   94 (247)
T ss_dssp             TTT-SCHHHHHHHEEEECSSCCC
T ss_pred             hhh-CCHHHHHhcEEEEeCCCcc
Confidence            853 3455678899999998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.77  E-value=1.1e-18  Score=174.72  Aligned_cols=88  Identities=24%  Similarity=0.415  Sum_probs=79.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||++.|++.              ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        52 ~~i~~~~vs~~y~~~--------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~  117 (306)
T 3nh6_A           52 GRIEFENVHFSYADG--------------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD  117 (306)
T ss_dssp             CCEEEEEEEEESSTT--------------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             CeEEEEEEEEEcCCC--------------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEE
Confidence            469999999999642              159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.. .+.+++|+.+||+||+..|
T Consensus       118 i~~-~~~~~~r~~i~~v~Q~~~l  139 (306)
T 3nh6_A          118 ISQ-VTQASLRSHIGVVPQDTVL  139 (306)
T ss_dssp             TTS-BCHHHHHHTEEEECSSCCC
T ss_pred             ccc-CCHHHHhcceEEEecCCcc
Confidence            974 5677889999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.77  E-value=8.9e-19  Score=168.12  Aligned_cols=87  Identities=18%  Similarity=0.394  Sum_probs=74.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~l~~~~l~~~y~~~---------------~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   68 (224)
T 2pcj_A            4 ILRAENIKKVIRGY---------------EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV   68 (224)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEEEeEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            58999999999542               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcc--cHHHhh-ccEEEEccCCCc
Q 010435          486 RSSV--SMTNIQ-KSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~--~~~~~r-~~iG~cpQ~~~L  507 (510)
                      ....  +..+.| +.+||+||+..+
T Consensus        69 ~~~~~~~~~~~~~~~i~~v~q~~~l   93 (224)
T 2pcj_A           69 DYTNEKELSLLRNRKLGFVFQFHYL   93 (224)
T ss_dssp             CSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred             CCCCHHHHHHHHhCcEEEEecCccc
Confidence            5321  122344 789999998644

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.77  E-value=7.2e-19  Score=169.98  Aligned_cols=90  Identities=23%  Similarity=0.392  Sum_probs=74.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|++..           +...+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   70 (235)
T 3tif_A            2 VKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN   70 (235)
T ss_dssp             EEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence            78999999996431           1236999999999999999999999999999999999999999999999999985


Q ss_pred             Cccc--HHHh-hccEEEEccCCCc
Q 010435          487 SSVS--MTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~--~~~~-r~~iG~cpQ~~~L  507 (510)
                      ....  ..+. |+.+||+||++.+
T Consensus        71 ~~~~~~~~~~~~~~i~~v~Q~~~l   94 (235)
T 3tif_A           71 DLDDDELTKIRRDKIGFVFQQFNL   94 (235)
T ss_dssp             TCCHHHHHHHHHHHEEEECTTCCC
T ss_pred             cCCHHHHHHHhhccEEEEecCCcc
Confidence            3221  2222 4579999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.77  E-value=8.1e-19  Score=172.38  Aligned_cols=87  Identities=17%  Similarity=0.371  Sum_probs=75.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         6 ~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~   70 (262)
T 1b0u_A            6 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI   70 (262)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             eEEEeeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence            59999999999532               599999999999999999999999999999999999999999999999998


Q ss_pred             CC------------cccHHHhhccEEEEccCCCc
Q 010435          486 RS------------SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~------------~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..            ..+..+.|+.+||+||+..+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l  104 (262)
T 1b0u_A           71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  104 (262)
T ss_dssp             CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred             cccccccccccccChhhHHHHhcceEEEecCccc
Confidence            41            01224567889999998644

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.76  E-value=2e-18  Score=170.41  Aligned_cols=90  Identities=22%  Similarity=0.399  Sum_probs=77.6

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||++.|++..            ...+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        15 ~~l~~~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~   82 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHP------------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP   82 (271)
T ss_dssp             CCEEEEEEEECCTTCT------------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             ceEEEEEEEEEeCCCC------------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            4699999999996410            1259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.. .+....|+.+||+||...+
T Consensus        83 i~~-~~~~~~~~~i~~v~Q~~~l  104 (271)
T 2ixe_A           83 LVQ-YDHHYLHTQVAAVGQEPLL  104 (271)
T ss_dssp             GGG-BCHHHHHHHEEEECSSCCC
T ss_pred             ccc-CCHHHHhccEEEEecCCcc
Confidence            852 3345678889999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.76  E-value=8.5e-19  Score=178.69  Aligned_cols=87  Identities=24%  Similarity=0.474  Sum_probs=75.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         4 ~l~i~~ls~~y~~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i   68 (359)
T 3fvq_A            4 ALHIGHLSKSFQNT---------------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI   68 (359)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            58999999999542               699999999999999999999999999999999999999999999999998


Q ss_pred             CC-cccHHHhhccEEEEccCCCc
Q 010435          486 RS-SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~-~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+ ..+....++.+||+||+..|
T Consensus        69 ~~~~~~~~~~~r~ig~vfQ~~~l   91 (359)
T 3fvq_A           69 FSKNTNLPVRERRLGYLVQEGVL   91 (359)
T ss_dssp             ESSSCBCCGGGSCCEEECTTCCC
T ss_pred             cccccccchhhCCEEEEeCCCcC
Confidence            31 12233457889999998755

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=1.9e-18  Score=171.12  Aligned_cols=85  Identities=27%  Similarity=0.409  Sum_probs=75.3

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        20 ~~l~~~~l~~~y~~~---------------~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~   84 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGK---------------TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKM   84 (279)
T ss_dssp             EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBC
T ss_pred             ceEEEEeEEEEECCE---------------EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEE
Confidence            469999999999542               59999999999999999999999999999999999999999999999998


Q ss_pred             cC--CcccHHHhhccEEEEccCC
Q 010435          485 IR--SSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~--~~~~~~~~r~~iG~cpQ~~  505 (510)
                      +.  . .+..+.|+.+||+||+.
T Consensus        85 ~~~~~-~~~~~~~~~i~~v~Q~~  106 (279)
T 2ihy_A           85 PGKVG-YSAETVRQHIGFVSHSL  106 (279)
T ss_dssp             CC----CCHHHHHTTEEEECHHH
T ss_pred             ccccc-CCHHHHcCcEEEEEcCc
Confidence            84  2 23456788999999974

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.75  E-value=1.4e-18  Score=178.21  Aligned_cols=84  Identities=21%  Similarity=0.440  Sum_probs=74.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .||+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~yg~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~   67 (381)
T 3rlf_A            3 SVQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM   67 (381)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence            48999999999542               699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..   ....++.+||+||+..|
T Consensus        68 ~~---~~~~~r~ig~VfQ~~~l   86 (381)
T 3rlf_A           68 ND---TPPAERGVGMVFQSYAL   86 (381)
T ss_dssp             TT---CCGGGSCEEEECTTCCC
T ss_pred             CC---CCHHHCCEEEEecCCcC
Confidence            53   22345789999998765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.75  E-value=1.2e-18  Score=169.23  Aligned_cols=86  Identities=22%  Similarity=0.381  Sum_probs=74.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++.              ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~~--------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (243)
T 1mv5_A            2 LSARHVDFAYDDS--------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID   67 (243)
T ss_dssp             EEEEEEEECSSSS--------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred             EEEEEEEEEeCCC--------------CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence            6899999999422              15999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+..+.|+.+||+||+..+
T Consensus        68 ~-~~~~~~~~~i~~v~q~~~l   87 (243)
T 1mv5_A           68 N-ISLENWRSQIGFVSQDSAI   87 (243)
T ss_dssp             T-TSCSCCTTTCCEECCSSCC
T ss_pred             h-CCHHHHHhhEEEEcCCCcc
Confidence            3 2234567889999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.74  E-value=4.5e-18  Score=161.88  Aligned_cols=82  Identities=22%  Similarity=0.384  Sum_probs=73.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++|++|.|++                .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus         8 ~~~l~~~~ls~~y~~----------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~   71 (214)
T 1sgw_A            8 GSKLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV   71 (214)
T ss_dssp             -CEEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             CceEEEEEEEEEeCC----------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence            457999999999942                4999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.      ..|+.+||+||...+
T Consensus        72 ~~~------~~~~~i~~v~q~~~~   89 (214)
T 1sgw_A           72 PIT------KVKGKIFFLPEEIIV   89 (214)
T ss_dssp             EGG------GGGGGEEEECSSCCC
T ss_pred             Ehh------hhcCcEEEEeCCCcC
Confidence            872      357889999997644

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.74  E-value=3e-18  Score=174.61  Aligned_cols=86  Identities=26%  Similarity=0.522  Sum_probs=75.8

Q ss_pred             CceEEEeeeEEEc-CCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          404 NVAVQIRGLVKTF-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       404 ~~~i~~~~l~k~y-~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      ...++++||+|.| ++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus        12 ~~~l~~~~l~~~y~g~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g   76 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGA---------------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG   76 (355)
T ss_dssp             CEEEEEEEEEECCTTST---------------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred             CceEEEEEEEEEEcCCC---------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence            4579999999999 432               599999999999999999999999999999999999999999999999


Q ss_pred             eecCCcccHHHhhccEEEEccCCCc
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++..   ....++.+||+||+..|
T Consensus        77 ~~i~~---~~~~~r~ig~v~Q~~~l   98 (355)
T 1z47_A           77 KRVTD---LPPQKRNVGLVFQNYAL   98 (355)
T ss_dssp             EECTT---CCGGGSSEEEECGGGCC
T ss_pred             EECCc---CChhhCcEEEEecCccc
Confidence            99853   22447889999997654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.74  E-value=3.1e-18  Score=174.91  Aligned_cols=84  Identities=26%  Similarity=0.432  Sum_probs=74.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i   67 (359)
T 2yyz_A            3 SIRVVNLKKYFGKV---------------KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV   67 (359)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence            48999999999532               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...   ...++.+||+||+..|
T Consensus        68 ~~~---~~~~r~ig~v~Q~~~l   86 (359)
T 2yyz_A           68 NDI---PPKYREVGMVFQNYAL   86 (359)
T ss_dssp             TTS---CGGGTTEEEECSSCCC
T ss_pred             CCC---ChhhCcEEEEecCccc
Confidence            531   2336789999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.73  E-value=4.8e-18  Score=173.69  Aligned_cols=84  Identities=23%  Similarity=0.416  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i   67 (362)
T 2it1_A            3 EIKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV   67 (362)
T ss_dssp             CEEEEEEEEESSSS---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEEEeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            48999999999532               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+.   ...++.+||+||+..|
T Consensus        68 ~~~---~~~~r~ig~v~Q~~~l   86 (362)
T 2it1_A           68 TEL---PPKDRNVGLVFQNWAL   86 (362)
T ss_dssp             TTS---CGGGTTEEEECTTCCC
T ss_pred             CcC---CHhHCcEEEEecCccc
Confidence            531   2335789999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.73  E-value=7e-18  Score=166.08  Aligned_cols=86  Identities=21%  Similarity=0.368  Sum_probs=73.4

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|+...          ...+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   71 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK   71 (266)
T ss_dssp             CEEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            378999999996210          0002699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ..   . +.|+.+||+||+.
T Consensus        72 ~~---~-~~~~~i~~v~q~~   87 (266)
T 2yz2_A           72 KG---Y-EIRRNIGIAFQYP   87 (266)
T ss_dssp             CH---H-HHGGGEEEECSSG
T ss_pred             ch---H-HhhhhEEEEeccc
Confidence            42   2 6688999999974

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.73  E-value=5.2e-18  Score=167.04  Aligned_cols=88  Identities=23%  Similarity=0.344  Sum_probs=73.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcC
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG  482 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g  482 (510)
                      ..++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+  .+|++|+|.++|
T Consensus        19 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g   83 (267)
T 2zu0_C           19 HMLSIKDLHVSVEDK---------------AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG   83 (267)
T ss_dssp             -CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred             ceEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence            469999999999532               599999999999999999999999999999999999  579999999999


Q ss_pred             eecCCcccHHHhhccEEEEccCCCc
Q 010435          483 FSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       483 ~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++.........++.+||+||+..+
T Consensus        84 ~~i~~~~~~~~~~~~i~~v~Q~~~l  108 (267)
T 2zu0_C           84 KDLLALSPEDRAGEGIFMAFQYPVE  108 (267)
T ss_dssp             EEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred             EECCcCCHHHHhhCCEEEEccCccc
Confidence            9984211122235569999998643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.73  E-value=5.9e-18  Score=173.88  Aligned_cols=87  Identities=22%  Similarity=0.369  Sum_probs=74.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~   67 (372)
T 1g29_1            3 GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV   67 (372)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEEC
Confidence            48999999999532               599999999999999999999999999999999999999999999999997


Q ss_pred             CCcc---cHHHhhccEEEEccCCCc
Q 010435          486 RSSV---SMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~---~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+..   .....++++||+||+..|
T Consensus        68 ~~~~~~~~~~~~~r~ig~v~Q~~~l   92 (372)
T 1g29_1           68 ADPEKGIFVPPKDRDIAMVFQSYAL   92 (372)
T ss_dssp             EEGGGTEECCGGGSSEEEECSCCCC
T ss_pred             ccccccccCCHhHCCEEEEeCCCcc
Confidence            3200   022346789999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.73  E-value=5.4e-18  Score=173.94  Aligned_cols=84  Identities=26%  Similarity=0.414  Sum_probs=71.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus        11 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i   75 (372)
T 1v43_A           11 EVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV   75 (372)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCE---------------EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence            48999999999532               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+   ....++.+||+||+..|
T Consensus        76 ~~---~~~~~r~ig~v~Q~~~l   94 (372)
T 1v43_A           76 TY---LPPKDRNISMVFQSYAV   94 (372)
T ss_dssp             TT---SCGGGGTEEEEEC----
T ss_pred             CC---CChhhCcEEEEecCccc
Confidence            53   12336789999998654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.73  E-value=4.9e-18  Score=165.70  Aligned_cols=87  Identities=29%  Similarity=0.394  Sum_probs=73.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcCe
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGF  483 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g~  483 (510)
                      .++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+  ++|++|+|.++|.
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~   67 (250)
T 2d2e_A            3 QLEIRDLWASIDGE---------------TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE   67 (250)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTE
T ss_pred             eEEEEeEEEEECCE---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence            48999999999532               599999999999999999999999999999999998  8999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++......+..|+.+||+||...+
T Consensus        68 ~~~~~~~~~~~~~~i~~v~q~~~~   91 (250)
T 2d2e_A           68 NILELSPDERARKGLFLAFQYPVE   91 (250)
T ss_dssp             ECTTSCHHHHHHTTBCCCCCCCC-
T ss_pred             ECCCCCHHHHHhCcEEEeccCCcc
Confidence            985322222335679999998654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.72  E-value=3.7e-18  Score=174.26  Aligned_cols=87  Identities=24%  Similarity=0.413  Sum_probs=74.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcc--eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYH--AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~--av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .++++||+|.|++.               .  +++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus         3 ~l~i~~l~~~y~~~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~   67 (353)
T 1oxx_K            3 RIIVKNVSKVFKKG---------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR   67 (353)
T ss_dssp             CEEEEEEEEEEGGG---------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred             EEEEEeEEEEECCE---------------eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence            48899999999532               5  999999999999999999999999999999999999999999999999


Q ss_pred             ecCCc--ccHHHhhccEEEEccCCCc
Q 010435          484 SIRSS--VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~--~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.+.  .+....++++||+||+..|
T Consensus        68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l   93 (353)
T 1oxx_K           68 LVASNGKLIVPPEDRKIGMVFQTWAL   93 (353)
T ss_dssp             EEEETTEESSCGGGSCEEEEETTSCC
T ss_pred             ECcccccccCChhhCCEEEEeCCCcc
Confidence            98320  0133457889999998754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.72  E-value=1.5e-17  Score=163.22  Aligned_cols=88  Identities=23%  Similarity=0.362  Sum_probs=76.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||++.|++..            .+.+++|+||++++||+++|+||||||||||+++|+|+++| +|+|.++|.++
T Consensus        17 ~l~i~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i   83 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQT------------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV   83 (260)
T ss_dssp             CEEEEEEEECCTTCC------------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG
T ss_pred             eEEEEEEEEEeCCCC------------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh
Confidence            599999999996421            12599999999999999999999999999999999999987 89999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. .+..++|+.+||+||...+
T Consensus        84 ~~-~~~~~~~~~i~~v~Q~~~l  104 (260)
T 2ghi_A           84 NK-YNRNSIRSIIGIVPQDTIL  104 (260)
T ss_dssp             GG-BCHHHHHTTEEEECSSCCC
T ss_pred             hh-cCHHHHhccEEEEcCCCcc
Confidence            52 3455678899999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.72  E-value=1.4e-17  Score=171.95  Aligned_cols=89  Identities=25%  Similarity=0.403  Sum_probs=78.1

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++||+|.|++.             ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus        17 ~~~i~~~~l~~~y~~~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~   82 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEG-------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGV   82 (390)
T ss_dssp             SCCEEEEEEEEESSSS-------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSC
T ss_pred             CCeEEEEEEEEEecCC-------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCE
Confidence            3469999999999532             1269999999999999999999999999999999999998 9999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.. ...++.|+.+||+||+..|
T Consensus        83 ~i~~-~~~~~~rr~ig~v~Q~~~l  105 (390)
T 3gd7_A           83 SWDS-ITLEQWRKAFGVIPQKVFI  105 (390)
T ss_dssp             BTTS-SCHHHHHHTEEEESCCCCC
T ss_pred             ECCc-CChHHHhCCEEEEcCCccc
Confidence            9863 4556778999999998765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.72  E-value=8.5e-18  Score=171.11  Aligned_cols=82  Identities=22%  Similarity=0.457  Sum_probs=73.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|++               + +++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~---------------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~   65 (348)
T 3d31_A            2 IEIESLSRKWKN---------------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT   65 (348)
T ss_dssp             EEEEEEEEECSS---------------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEECC---------------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            689999999942               2 899999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +   ....++.+||+||+..|
T Consensus        66 ~---~~~~~r~ig~v~Q~~~l   83 (348)
T 3d31_A           66 D---LSPEKHDIAFVYQNYSL   83 (348)
T ss_dssp             T---SCHHHHTCEEECTTCCC
T ss_pred             C---CchhhCcEEEEecCccc
Confidence            3   23457789999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.70  E-value=1.4e-17  Score=161.45  Aligned_cols=80  Identities=23%  Similarity=0.345  Sum_probs=70.6

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|++                 +++|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~-----------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   63 (240)
T 2onk_A            2 FLKVRAEKRLGN-----------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT   63 (240)
T ss_dssp             CEEEEEEEEETT-----------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCC-----------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            578999999931                 59999999999 999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .   ....|+.+||+||+..+
T Consensus        64 ~---~~~~~~~i~~v~q~~~l   81 (240)
T 2onk_A           64 P---LPPERRGIGFVPQDYAL   81 (240)
T ss_dssp             T---SCTTTSCCBCCCSSCCC
T ss_pred             c---CchhhCcEEEEcCCCcc
Confidence            3   22457789999998644

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.69  E-value=4.7e-17  Score=177.32  Aligned_cols=90  Identities=22%  Similarity=0.382  Sum_probs=80.4

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...++++|+++.|++..             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.
T Consensus       337 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~  403 (578)
T 4a82_A          337 QGRIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH  403 (578)
T ss_dssp             SCCEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred             CCeEEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence            34699999999996531             25999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+++ .+.++.|+++|||||++.|
T Consensus       404 ~~~~-~~~~~~r~~i~~v~Q~~~l  426 (578)
T 4a82_A          404 NIKD-FLTGSLRNQIGLVQQDNIL  426 (578)
T ss_dssp             EGGG-SCHHHHHHTEEEECSSCCC
T ss_pred             Ehhh-CCHHHHhhheEEEeCCCcc
Confidence            9963 4677889999999998765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.68  E-value=7.9e-17  Score=155.05  Aligned_cols=76  Identities=22%  Similarity=0.370  Sum_probs=67.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|++|.|++.             .+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|  
T Consensus         5 ~~l~~~~l~~~y~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--   69 (229)
T 2pze_A            5 TEVVMENVTAFWEEG-------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--   69 (229)
T ss_dssp             EEEEEEEEEECSSTT-------------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--
T ss_pred             ceEEEEEEEEEeCCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--
Confidence            469999999999632             12599999999999999999999999999999999999999999999987  


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                  .+||+||...+
T Consensus        70 ------------~i~~v~q~~~~   80 (229)
T 2pze_A           70 ------------RISFCSQFSWI   80 (229)
T ss_dssp             ------------CEEEECSSCCC
T ss_pred             ------------EEEEEecCCcc
Confidence                        38999998654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.68  E-value=6.3e-17  Score=157.54  Aligned_cols=81  Identities=22%  Similarity=0.348  Sum_probs=71.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.                   .+++|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++
T Consensus         4 ~l~~~~l~~~-------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~   63 (249)
T 2qi9_C            4 VMQLQDVAES-------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPL   63 (249)
T ss_dssp             EEEEEEEEET-------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEG
T ss_pred             EEEEEceEEE-------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEEC
Confidence            5788898865                   1899999999999999999999999999999999999999 9999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .. .+..+.|+.+||+||+..+
T Consensus        64 ~~-~~~~~~~~~i~~v~q~~~~   84 (249)
T 2qi9_C           64 EA-WSATKLALHRAYLSQQQTP   84 (249)
T ss_dssp             GG-SCHHHHHHHEEEECSCCCC
T ss_pred             Cc-CCHHHHhceEEEECCCCcc
Confidence            42 3455678889999998654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.68  E-value=7.1e-17  Score=176.08  Aligned_cols=90  Identities=18%  Similarity=0.349  Sum_probs=80.6

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|+++.|++..             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.
T Consensus       339 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~  405 (587)
T 3qf4_A          339 EGSVSFENVEFRYFENT-------------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL  405 (587)
T ss_dssp             CCCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred             CCcEEEEEEEEEcCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence            34699999999996431             25999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+++ .+.++.|+++||+||++.|
T Consensus       406 ~i~~-~~~~~~r~~i~~v~Q~~~l  428 (587)
T 3qf4_A          406 DVRT-VKLKDLRGHISAVPQETVL  428 (587)
T ss_dssp             BGGG-BCHHHHHHHEEEECSSCCC
T ss_pred             Eccc-CCHHHHHhheEEECCCCcC
Confidence            9963 5677889999999998765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.68  E-value=2.8e-17  Score=179.74  Aligned_cols=88  Identities=26%  Similarity=0.453  Sum_probs=79.7

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++              ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus       353 ~~i~~~~v~~~y~~~--------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~  418 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKK--------------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID  418 (598)
T ss_dssp             CCEEEEEEECCSSSS--------------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             CeEEEEEEEEECCCC--------------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence            469999999999642              159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.++.|+++||+||++.|
T Consensus       419 i~~-~~~~~~r~~i~~v~Q~~~l  440 (598)
T 3qf4_B          419 IRK-IKRSSLRSSIGIVLQDTIL  440 (598)
T ss_dssp             GGG-SCHHHHHHHEEEECTTCCC
T ss_pred             hhh-CCHHHHHhceEEEeCCCcc
Confidence            963 4677889999999998765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.67  E-value=7.5e-17  Score=156.00  Aligned_cols=75  Identities=23%  Similarity=0.396  Sum_probs=67.2

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++|++|.|++..             ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|   
T Consensus         3 ~l~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---   66 (237)
T 2cbz_A            3 SITVRNATFTWARSD-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---   66 (237)
T ss_dssp             CEEEEEEEEESCTTS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---
T ss_pred             eEEEEEEEEEeCCCC-------------CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---
Confidence            489999999996321             1599999999999999999999999999999999999999999999988   


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                 .+||+||...+
T Consensus        67 -----------~i~~v~Q~~~~   77 (237)
T 2cbz_A           67 -----------SVAYVPQQAWI   77 (237)
T ss_dssp             -----------CEEEECSSCCC
T ss_pred             -----------EEEEEcCCCcC
Confidence                       38999998754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.67  E-value=4.4e-17  Score=159.87  Aligned_cols=84  Identities=23%  Similarity=0.437  Sum_probs=71.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++|++|.|++..           .++.+++++||+++ ||+++|+||||||||||+++|+|+. |++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~~~-----------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~   68 (263)
T 2pjz_A            2 IQLKNVGITLSGKG-----------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR   68 (263)
T ss_dssp             EEEEEEEEEEEEET-----------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGG
T ss_pred             EEEEEEEEEeCCCC-----------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECc
Confidence            68999999995310           01269999999999 9999999999999999999999999 99999999999984


Q ss_pred             CcccHHHhhccEE-EEccCCCc
Q 010435          487 SSVSMTNIQKSIG-VCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG-~cpQ~~~L  507 (510)
                      .  . .. |+.+| |+||+..+
T Consensus        69 ~--~-~~-~~~i~~~v~Q~~~l   86 (263)
T 2pjz_A           69 K--I-RN-YIRYSTNLPEAYEI   86 (263)
T ss_dssp             G--C-SC-CTTEEECCGGGSCT
T ss_pred             c--h-HH-hhheEEEeCCCCcc
Confidence            2  2 23 77899 99998755

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.67  E-value=1.4e-16  Score=173.69  Aligned_cols=89  Identities=21%  Similarity=0.444  Sum_probs=79.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.             +.+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus       340 ~~i~~~~v~~~y~~~~-------------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~  406 (582)
T 3b60_A          340 GDLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD  406 (582)
T ss_dssp             CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred             CcEEEEEEEEEcCCCC-------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence            4699999999996421             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.++.|+++||+||++.|
T Consensus       407 ~~~-~~~~~~~~~i~~v~Q~~~l  428 (582)
T 3b60_A          407 LRE-YTLASLRNQVALVSQNVHL  428 (582)
T ss_dssp             TTT-BCHHHHHHTEEEECSSCCC
T ss_pred             ccc-cCHHHHHhhCeEEccCCcC
Confidence            964 4567789999999998755

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.66  E-value=1.4e-16  Score=173.73  Aligned_cols=89  Identities=21%  Similarity=0.390  Sum_probs=79.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus       340 ~~i~~~~v~~~y~~~~-------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~  406 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKE-------------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD  406 (582)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            4699999999996421             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.++.|+++||+||++.|
T Consensus       407 ~~~-~~~~~~~~~i~~v~Q~~~l  428 (582)
T 3b5x_A          407 VRD-YKLTNLRRHFALVSQNVHL  428 (582)
T ss_pred             hhh-CCHHHHhcCeEEEcCCCcc
Confidence            863 4567789999999998754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.66  E-value=1.9e-16  Score=154.55  Aligned_cols=73  Identities=27%  Similarity=0.421  Sum_probs=65.9

Q ss_pred             eEEEeeeEEEcC-CCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          406 AVQIRGLVKTFP-GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       406 ~i~~~~l~k~y~-~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .++++||+|.|+ +.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.     
T Consensus         4 ~l~i~~l~~~y~~~~---------------~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----   63 (253)
T 2nq2_C            4 ALSVENLGFYYQAEN---------------FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----   63 (253)
T ss_dssp             EEEEEEEEEEETTTT---------------EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----
T ss_pred             eEEEeeEEEEeCCCC---------------eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----
Confidence            589999999996 32               599999999999999999999999999999999999999999998     


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                               .++.+||+||+..+
T Consensus        64 ---------~~~~i~~v~q~~~~   77 (253)
T 2nq2_C           64 ---------VYQSIGFVPQFFSS   77 (253)
T ss_dssp             ---------ECSCEEEECSCCCC
T ss_pred             ---------EeccEEEEcCCCcc
Confidence                     24579999998654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.62  E-value=7.4e-16  Score=181.99  Aligned_cols=91  Identities=23%  Similarity=0.422  Sum_probs=82.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ...|+++||++.|+++.            +.++|+|+||+|++||.+||+|+|||||||++++|.|+++|++|+|.|||.
T Consensus      1074 ~g~I~f~nVsf~Y~~~~------------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~ 1141 (1321)
T 4f4c_A         1074 YGKVIFKNVRFAYPERP------------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS 1141 (1321)
T ss_dssp             CCCEEEEEEEECCTTSC------------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE
T ss_pred             CCeEEEEEEEEeCCCCC------------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE
Confidence            34699999999997542            336999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+++ .+.+.+|+++|+|||++.|
T Consensus      1142 di~~-i~~~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A         1142 EIKT-LNPEHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp             ETTT-BCHHHHHTTEEEECSSCCC
T ss_pred             Ehhh-CCHHHHHhheEEECCCCEe
Confidence            9974 6789999999999999876

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.59  E-value=1.9e-15  Score=177.98  Aligned_cols=91  Identities=23%  Similarity=0.439  Sum_probs=81.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++|+++.|+++.            +.++++|+||++++||++||+|||||||||++++|.|+++|++|+|.++|.
T Consensus       385 ~g~i~~~~v~~~y~~~~------------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~  452 (1284)
T 3g5u_A          385 QGNLEFKNIHFSYPSRK------------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ  452 (1284)
T ss_dssp             CCCEEEEEEEECCSSTT------------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTE
T ss_pred             CCeEEEEEEEEEcCCCC------------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence            34699999999997531            236999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+++ .+.+.+|+++|||||++.|
T Consensus       453 ~i~~-~~~~~~r~~i~~v~Q~~~l  475 (1284)
T 3g5u_A          453 DIRT-INVRYLREIIGVVSQEPVL  475 (1284)
T ss_dssp             EGGG-SCHHHHHHHEEEECSSCCC
T ss_pred             EHHh-CCHHHHHhheEEEcCCCcc
Confidence            9963 5678899999999999865

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.57  E-value=4.6e-15  Score=175.23  Aligned_cols=91  Identities=23%  Similarity=0.405  Sum_probs=82.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..|+++|+++.|+++.            ++.+++|+||++++||.++|+||+||||||++++|.|+++|++|+|.++|.
T Consensus       413 ~g~I~~~nvsF~Y~~~~------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~  480 (1321)
T 4f4c_A          413 KGDITVENVHFTYPSRP------------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV  480 (1321)
T ss_dssp             CCCEEEEEEEECCSSST------------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             CCcEEEEEeeeeCCCCC------------CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence            34699999999997542            336999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+++ .+.+.+|+++|||||++.|
T Consensus       481 ~i~~-~~~~~lr~~i~~v~Q~~~L  503 (1321)
T 4f4c_A          481 DVRD-INLEFLRKNVAVVSQEPAL  503 (1321)
T ss_dssp             ETTT-SCHHHHHHHEEEECSSCCC
T ss_pred             cchh-ccHHHHhhcccccCCccee
Confidence            9984 6788999999999999876

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.56  E-value=2.3e-15  Score=149.61  Aligned_cols=72  Identities=24%  Similarity=0.353  Sum_probs=55.9

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.+  .               .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|  
T Consensus        39 ~~l~~~~l~~~~--~---------------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--   99 (290)
T 2bbs_A           39 DSLSFSNFSLLG--T---------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--   99 (290)
T ss_dssp             -----------C--C---------------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--
T ss_pred             ceEEEEEEEEcC--c---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--
Confidence            458999998753  1               489999999999999999999999999999999999999999999987  


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                                  ++||+||...+
T Consensus       100 ------------~i~~v~Q~~~l  110 (290)
T 2bbs_A          100 ------------RISFCSQNSWI  110 (290)
T ss_dssp             ------------CEEEECSSCCC
T ss_pred             ------------EEEEEeCCCcc
Confidence                        38999998654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.55  E-value=4.2e-15  Score=175.11  Aligned_cols=90  Identities=23%  Similarity=0.462  Sum_probs=80.8

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|+++.            +.++++|+||++++||++||+|+|||||||++++|.|+++|++|+|.++|.|
T Consensus      1029 g~i~~~~v~~~y~~~~------------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRP------------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096 (1284)
T ss_dssp             CCEEEEEEEBCCSCGG------------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSC
T ss_pred             CcEEEEEEEEECCCCC------------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence            4699999999996531            2258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +++ .+.+.+|+++||+||+..|
T Consensus      1097 i~~-~~~~~~r~~i~~v~Q~~~l 1118 (1284)
T 3g5u_A         1097 IKQ-LNVQWLRAQLGIVSQEPIL 1118 (1284)
T ss_dssp             TTS-SCHHHHTTSCEEEESSCCC
T ss_pred             ccc-CCHHHHHhceEEECCCCcc
Confidence            974 5678899999999998865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.40  E-value=2.7e-13  Score=153.27  Aligned_cols=76  Identities=28%  Similarity=0.374  Sum_probs=66.0

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++++|+++.|++..             +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|. 
T Consensus       670 ~mL~v~nLs~~Y~g~~-------------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-  735 (986)
T 2iw3_A          670 AIVKVTNMEFQYPGTS-------------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-  735 (986)
T ss_dssp             EEEEEEEEEECCTTCS-------------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-
T ss_pred             ceEEEEeeEEEeCCCC-------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-
Confidence            4699999999996421             15899999999999999999999999999999999999999999999752 


Q ss_pred             cCCcccHHHhhccEEEEccCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                                 .++||++|+.
T Consensus       736 -----------~~I~yv~Q~~  745 (986)
T 2iw3_A          736 -----------CRIAYIKQHA  745 (986)
T ss_dssp             -----------CCEEEECHHH
T ss_pred             -----------cceEeeccch
Confidence                       1478888863

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.39  E-value=2.1e-15  Score=136.56  Aligned_cols=65  Identities=23%  Similarity=0.103  Sum_probs=55.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      .|++++||++++||+++|+|||||||||++++|+|++ |++|+|.++|.++..  . .+.+   ++++||..
T Consensus        21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~-~~~~---~~~~q~~~   85 (158)
T 1htw_A           21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--E-YNIA---GKMIYHFD   85 (158)
T ss_dssp             HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--E-EEET---TEEEEEEE
T ss_pred             HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--e-ccCC---Ccceeccc
Confidence            6999999999999999999999999999999999999 999999999988731  1 1112   27888753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.31  E-value=2e-12  Score=140.85  Aligned_cols=73  Identities=27%  Similarity=0.375  Sum_probs=64.6

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..+++++++|.|++                ..+++++|++++||++||+||||||||||+++|+|+.+|++|+|.+   
T Consensus       355 ~~~l~~~~l~~~~~~----------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---  415 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGS----------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---  415 (607)
T ss_dssp             CEEEEECCEEEECSS----------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---
T ss_pred             ceEEEEeceEEEecc----------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---
Confidence            357999999999953                3689999999999999999999999999999999999999999876   


Q ss_pred             ecCCcccHHHhhccEEEEccCCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                                 ++.+||+||+..
T Consensus       416 -----------~~~i~~v~Q~~~  427 (607)
T 3bk7_A          416 -----------DLTVAYKPQYIK  427 (607)
T ss_dssp             -----------CCCEEEECSSCC
T ss_pred             -----------eeEEEEEecCcc
Confidence                       136999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.29  E-value=2.7e-12  Score=138.32  Aligned_cols=73  Identities=27%  Similarity=0.363  Sum_probs=64.5

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++++++.|++                ..+++++|++++||++||+|+||||||||+++|+|+.+|++|+|.+   
T Consensus       285 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---  345 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGS----------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---  345 (538)
T ss_dssp             CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---
T ss_pred             CeEEEEeeEEEEECC----------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---
Confidence            457999999999943                3689999999999999999999999999999999999999999875   


Q ss_pred             ecCCcccHHHhhccEEEEccCCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                                 +..+||+||+..
T Consensus       346 -----------~~~i~~v~Q~~~  357 (538)
T 1yqt_A          346 -----------DLTVAYKPQYIK  357 (538)
T ss_dssp             -----------CCCEEEECSSCC
T ss_pred             -----------CceEEEEecCCc
Confidence                       135999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.27  E-value=5.2e-12  Score=135.82  Aligned_cols=73  Identities=21%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..+++++++|.|++                ..++..||++++||++||+||||||||||+++|+|+.+|++|+|.++| 
T Consensus       267 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-  329 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGD----------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-  329 (538)
T ss_dssp             CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-
T ss_pred             cceEEEcceEEEECC----------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence            457899999999953                367888999999999999999999999999999999999999998754 


Q ss_pred             ecCCcccHHHhhccEEEEccCC
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                                  +.+|++||..
T Consensus       330 ------------~~i~~~~q~~  339 (538)
T 3ozx_A          330 ------------QILSYKPQRI  339 (538)
T ss_dssp             ------------CCEEEECSSC
T ss_pred             ------------eeeEeechhc
Confidence                        2478888864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.25  E-value=6.8e-13  Score=126.43  Aligned_cols=67  Identities=13%  Similarity=0.015  Sum_probs=45.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ..++|+||++++|++++|+||||||||||+++|+|++ |  |++.+ |.++.+.......++.+||++|..
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~   77 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDK   77 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCH
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCH
Confidence            4799999999999999999999999999999999999 5  99999 877632111123467899999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.22  E-value=1.8e-12  Score=139.70  Aligned_cols=84  Identities=20%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             EEE-eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-------
Q 010435          407 VQI-RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-------  478 (510)
Q Consensus       407 i~~-~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-------  478 (510)
                      .++ +||+|.|++.              ..+++++| ++++||++||+|+||||||||+++|+|+++|++|++       
T Consensus        21 ~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~   85 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN--------------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV   85 (538)
T ss_dssp             ---CCCEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHH
T ss_pred             hhHhcCcEEEECCc--------------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhh
Confidence            454 5899999542              14899999 999999999999999999999999999999999995       


Q ss_pred             --EEcCeecCCc-ccHHHhhccEEEEccCC
Q 010435          479 --LIYGFSIRSS-VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       479 --~i~g~~i~~~-~~~~~~r~~iG~cpQ~~  505 (510)
                        .++|.++... ......+..+|+++|..
T Consensus        86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~  115 (538)
T 1yqt_A           86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYV  115 (538)
T ss_dssp             HHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred             HHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence              3456544210 00111234688999863

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.22  E-value=2e-12  Score=140.86  Aligned_cols=84  Identities=23%  Similarity=0.259  Sum_probs=64.2

Q ss_pred             eEEE--------eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          406 AVQI--------RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       406 ~i~~--------~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      ++++        +||+|.|++.              ..+++++| .+++||++||+||||||||||+++|+|+++|++|+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVN--------------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             eEEEecCCccccCCeEEEECCC--------------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            4778        8889999542              13899999 99999999999999999999999999999999999


Q ss_pred             E---------EEcCeecCCc-ccHHHhhccEEEEccC
Q 010435          478 A---------LIYGFSIRSS-VSMTNIQKSIGVCPQV  504 (510)
Q Consensus       478 i---------~i~g~~i~~~-~~~~~~r~~iG~cpQ~  504 (510)
                      +         .++|.++... ......+..+++++|.
T Consensus       148 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~  184 (607)
T 3bk7_A          148 DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY  184 (607)
T ss_dssp             TCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred             cccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence            5         3456554210 0011123568899986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.21  E-value=1.3e-12  Score=136.98  Aligned_cols=86  Identities=14%  Similarity=0.183  Sum_probs=71.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe-
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF-  483 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~-  483 (510)
                      ..++++++++.|+..              .+|++++ |.+.+||+++|+|+||||||||+++|+|+.+|+.|.+.++|. 
T Consensus       130 ~~l~~~~v~~~~~tg--------------~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r  194 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG--------------VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGER  194 (438)
T ss_dssp             CTTTSCCCCSBCCCS--------------CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CceEEeccceecCCC--------------ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEecee
Confidence            457888999999532              2599999 999999999999999999999999999999999999999998 


Q ss_pred             --ecCCc----ccHHHhhccEEEEccCC
Q 010435          484 --SIRSS----VSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       484 --~i~~~----~~~~~~r~~iG~cpQ~~  505 (510)
                        ++...    .+....++.+++++|.+
T Consensus       195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~  222 (438)
T 2dpy_A          195 GREVKDFIENILGPDGRARSVVIAAPAD  222 (438)
T ss_dssp             HHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred             cHHHHHHHHhhccccccCceEEEEECCC
Confidence              44210    01234678899999964

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.18  E-value=5.9e-13  Score=125.95  Aligned_cols=62  Identities=16%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .+++++    ++||+++|+||||||||||+++|+|+ +|++|+|.  +.++.  ....+.++.+||+||..
T Consensus        14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~--~~~~~~~~~ig~v~q~~   75 (208)
T 3b85_A           14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT--RPAVEAGEKLGFLPGTL   75 (208)
T ss_dssp             HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE--ECSCCTTCCCCSSCC--
T ss_pred             HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec--CCchhhhcceEEecCCH
Confidence            689996    89999999999999999999999999 99999994  33331  11124578899999964

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.15  E-value=7.8e-12  Score=124.96  Aligned_cols=71  Identities=17%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh--hccEEEEccCCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQVTL  506 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~--r~~iG~cpQ~~~  506 (510)
                      ++++++|++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+....   +...+  |+.+++++|...
T Consensus        89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~  164 (302)
T 3b9q_A           89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD  164 (302)
T ss_dssp             CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred             cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence            457889999999999999999999999999999999999999999999874311   12233  457999999764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.14  E-value=7.8e-12  Score=127.32  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=69.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..++.++++|.|+..              ++|++++ |.+.+||++||+|+||||||||+++|+|+.+|+.|.+.+.|.+
T Consensus        44 ~~i~~~~l~~~~~tg--------------~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           44 DPLLRQVIDQPFILG--------------VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             CSTTCCCCCSEECCS--------------CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CCeeecccceecCCC--------------CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            457889999999632              2599999 9999999999999999999999999999999999999999865


Q ss_pred             cCCcc------cHHHhhccEEEEccCC
Q 010435          485 IRSSV------SMTNIQKSIGVCPQVT  505 (510)
Q Consensus       485 i~~~~------~~~~~r~~iG~cpQ~~  505 (510)
                      .+...      .....++.+++++|.+
T Consensus       109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~  135 (347)
T 2obl_A          109 GREVNEFLALLPQSTLSKCVLVVTTSD  135 (347)
T ss_dssp             HHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred             HHHHHHHHHhhhhhhhhceEEEEECCC
Confidence            21000      1123456789999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.10  E-value=5.7e-12  Score=135.65  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=61.4

Q ss_pred             ceeeeeeE-EEeCCcEEEEecCCCCchhHHHHH--HcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC--LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl-~v~~gei~~llG~nGaGKsTl~~~--l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .+|+++++ ++++||+++|+|+||||||||+++  ++|+.+|++|.++++|.+.  ..+..+.++.+|+++|+.
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~--~~~~~~~~~~~g~~~q~~   97 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--PQDIIKNARSFGWDLAKL   97 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHGGGTCCHHHH
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCChHHh
Confidence            69999999 999999999999999999999999  7899999999999999874  334556677899999963

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.07  E-value=8.9e-13  Score=133.96  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++++++.|++               ..+++++++++++|++++|+|+||||||||+++|+|+++|++|++.+.|.++.
T Consensus        30 ie~~~~~~~~~~---------------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~   94 (337)
T 2qm8_A           30 AESRRADHRAAV---------------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS   94 (337)
T ss_dssp             HTCSSHHHHHHH---------------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             HeeCCcccccCh---------------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence            566778888842               15899999999999999999999999999999999999999999999999873


Q ss_pred             Ccc---cHHHhhccEEEEccCCC
Q 010435          487 SSV---SMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       487 ~~~---~~~~~r~~iG~cpQ~~~  506 (510)
                      ...   .....|+++|+++|...
T Consensus        95 ~~~~~~~~~~~~~~i~~v~q~~~  117 (337)
T 2qm8_A           95 STRTGGSILGDKTRMARLAIDRN  117 (337)
T ss_dssp             GGSSCCCSSCCGGGSTTGGGCTT
T ss_pred             ccccccchHHHhhhheeeccCcc
Confidence            211   12345778999999754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.05  E-value=1.3e-11  Score=128.19  Aligned_cols=62  Identities=16%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             ceeeeeeEEEeCCc--------------------EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHh
Q 010435          435 HAIKGLWVNIAKDQ--------------------LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI  494 (510)
Q Consensus       435 ~av~~lsl~v~~ge--------------------i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~  494 (510)
                      .+++++||++++||                    ++||+|+||||||||+|+|+|+.+|++|+|.++|.++.        
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t--------  108 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------  108 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------------
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--------
Confidence            69999999999999                    99999999999999999999999999999999987641        


Q ss_pred             hccEEEEccCCC
Q 010435          495 QKSIGVCPQVTL  506 (510)
Q Consensus       495 r~~iG~cpQ~~~  506 (510)
                      |+  |+++|++.
T Consensus       109 ~~--~~v~q~~~  118 (413)
T 1tq4_A          109 ME--RHPYKHPN  118 (413)
T ss_dssp             CC--CEEEECSS
T ss_pred             ee--EEeccccc
Confidence            22  78888754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.05  E-value=4.4e-11  Score=121.98  Aligned_cols=69  Identities=17%  Similarity=0.180  Sum_probs=58.2

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh--hccEEEEccCCC
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQVTL  506 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~--r~~iG~cpQ~~~  506 (510)
                      ++++|++++|++++|+|+||||||||++.|+|+++|++|+|.+.|.|+....   +...+  |+.+++++|...
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~  221 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD  221 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc
Confidence            5788999999999999999999999999999999999999999999984311   12222  567999999764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.02  E-value=5.1e-11  Score=125.67  Aligned_cols=51  Identities=18%  Similarity=0.066  Sum_probs=49.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      .+++++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            589999999999 999999999999999999999999999999999998874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.00  E-value=6.2e-11  Score=114.70  Aligned_cols=59  Identities=15%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.+++|+||++++|+++||+|+|||||||++++|+|++    |.+.++           ..++.+++++|.+..
T Consensus        12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~~~~~i~~v~~d~~~   70 (245)
T 2jeo_A           12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------QRQRKVVILSQDRFY   70 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------GGGCSEEEEEGGGGB
T ss_pred             ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------ccCCceEEEeCCcCc
Confidence            36999999999999999999999999999999999976    433332           346678888887543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.99  E-value=9e-11  Score=123.53  Aligned_cols=70  Identities=24%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHH--hhccEEEEccCCC
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTN--IQKSIGVCPQVTL  506 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~--~r~~iG~cpQ~~~  506 (510)
                      .+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+....   ++..  .|+.+|+++|...
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~  357 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG  357 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence            46889999999999999999999999999999999999999999988874211   1222  3678999999764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.99  E-value=5.6e-11  Score=121.78  Aligned_cols=69  Identities=14%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEc-cCCCc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP-QVTLF  507 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cp-Q~~~L  507 (510)
                      ++++++|.+++|++++|+|+||||||||+++|+|+++|++|.|.++|..-   ......++.+++++ |.+.+
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e---~~~~~~~~~v~~v~~q~~~~  233 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE---LFLPDHPNHVHLFYPSEAKE  233 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---CCCTTCSSEEEEECC-----
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---cCccccCCEEEEeecCcccc
Confidence            34999999999999999999999999999999999999999999998531   12223577899999 76543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.99  E-value=2.1e-11  Score=128.64  Aligned_cols=57  Identities=16%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-e-EEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-D-ALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~-i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++||++++||+++|+||||||||||+++|+|+.+|++| + |+++| +         .|+.+|++||..
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~---------~~~~i~~vpq~~  188 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D---------PQQPIFTVPGCI  188 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C---------TTSCSSSCSSCC
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C---------ccCCeeeeccch
Confidence            68999999999999999999999999999999999999 9 99998 2         267799999975

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.98  E-value=1.1e-10  Score=129.08  Aligned_cols=51  Identities=24%  Similarity=0.313  Sum_probs=37.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHH---------------------HHHcCCccCC-------cceEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------------------SCLTGITPVT-------GGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~---------------------~~l~G~~~pt-------~G~i~i~g~~i  485 (510)
                      +||+|+||+|++||++||+||||||||||+                     +++.|+..|+       .|.+.++|.++
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            699999999999999999999999999998                     8999999998       45566666554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.98  E-value=8.5e-11  Score=110.72  Aligned_cols=64  Identities=17%  Similarity=0.202  Sum_probs=39.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ..++|  .++++||+++|+||||||||||+++|+|+++.    +.+++.... .......++.+||+||..
T Consensus        10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~-~~~~~~~~~~i~~~~q~~   73 (207)
T 1znw_A           10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATT-RAPRPGEVDGVDYHFIDP   73 (207)
T ss_dssp             -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEES-SCCCTTCCBTTTBEECCH
T ss_pred             cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccc-cCCcccccCCCeeEecCH
Confidence            57888  79999999999999999999999999999863    444432211 011112367899999964

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.95  E-value=6.7e-10  Score=125.74  Aligned_cols=70  Identities=14%  Similarity=0.270  Sum_probs=55.4

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..+...+++|.|+++               .+++|+||++++||++||+|+||||||||+++|+|      |++  +|.+
T Consensus       434 ~~L~~~~ls~~yg~~---------------~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~  490 (986)
T 2iw3_A          434 EDLCNCEFSLAYGAK---------------ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFP  490 (986)
T ss_dssp             CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCC
T ss_pred             ceeEEeeEEEEECCE---------------EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCc
Confidence            357777999999542               59999999999999999999999999999999995      443  4544


Q ss_pred             cCCcccHHHhhccEEEEccC
Q 010435          485 IRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      ...       +.+++|++|.
T Consensus       491 ~~~-------~~~~~~v~q~  503 (986)
T 2iw3_A          491 TQE-------ECRTVYVEHD  503 (986)
T ss_dssp             CTT-------TSCEEETTCC
T ss_pred             ccc-------ceeEEEEccc
Confidence            311       1247888885

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.94  E-value=8.2e-11  Score=119.06  Aligned_cols=65  Identities=20%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      +++++++.+++|++++|+|+||||||||+++|+|+++|++|.|.++|.+..   .....++.+++++|
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---~~~~~~~~i~~~~g  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---VFKHHKNYTQLFFG  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---CCSSCSSEEEEECB
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---ccccchhEEEEEeC
Confidence            789999999999999999999999999999999999999999999997531   12234667888753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.93  E-value=1.2e-11  Score=124.11  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=64.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEE-------------------eCCcEEEEecCCCCchhHHHHH
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI-------------------AKDQLFCLLGPNGAGKTTTISC  466 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v-------------------~~gei~~llG~nGaGKsTl~~~  466 (510)
                      .+++++|+|.|.                 ++++++++.+                   ++|+++||+|+|||||||++++
T Consensus        37 ~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~   99 (308)
T 1sq5_A           37 DLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARV   99 (308)
T ss_dssp             TCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHH
T ss_pred             ccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHH
Confidence            488899999992                 4889999988                   9999999999999999999999


Q ss_pred             HcCCcc--CCcceEEE---cCeecCCcccHHHhhccEEEEccC
Q 010435          467 LTGITP--VTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       467 l~G~~~--pt~G~i~i---~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      |+|++.  |++|+|.+   +|....     ...++.+|++ |.
T Consensus       100 L~~~l~~~~~~G~i~vi~~d~~~~~-----~~~~~~~~~v-q~  136 (308)
T 1sq5_A          100 LQALLSRWPEHRRVELITTDGFLHP-----NQVLKERGLM-KK  136 (308)
T ss_dssp             HHHHHTTSTTCCCEEEEEGGGGBCC-----HHHHHHHTCT-TC
T ss_pred             HHHHHhhCCCCCeEEEEecCCccCc-----HHHHHhCCEe-ec
Confidence            999998  99999999   887752     1235567887 63

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.92  E-value=4e-10  Score=122.64  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=39.5

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      .+++++ .+++||++||+||||||||||+++|+|+++|++|++
T Consensus        93 ~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           93 KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            677777 689999999999999999999999999999999998

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.92  E-value=1.6e-10  Score=113.67  Aligned_cols=55  Identities=20%  Similarity=0.123  Sum_probs=33.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .++|+||||||||||+++|+|+..|++|++.++|.++..    ...++.+|++||.+.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~   58 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK----TVEIKAIGHVIEEGGV   58 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCC----CCSCCEEEESCC----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc----ceeeeeeEEEeecCCC
Confidence            579999999999999999999999999999999998742    1346789999997654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.91  E-value=2.7e-11  Score=120.75  Aligned_cols=77  Identities=16%  Similarity=0.250  Sum_probs=59.9

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +++++|++.|+ .               .+++++||++++||+++|+|||||||||++++|+|++   +|+|...+....
T Consensus       102 i~~~~vs~~y~-~---------------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~  162 (305)
T 2v9p_A          102 FNYQNIELITF-I---------------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKS  162 (305)
T ss_dssp             HHHTTCCHHHH-H---------------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTS
T ss_pred             EEEEEEEEEcC-h---------------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcc
Confidence            67788888884 1               5999999999999999999999999999999999999   899987653321


Q ss_pred             CcccHHHhhc-cEEEEcc
Q 010435          487 SSVSMTNIQK-SIGVCPQ  503 (510)
Q Consensus       487 ~~~~~~~~r~-~iG~cpQ  503 (510)
                       ..-...++. ++++.++
T Consensus       163 -~lf~~ti~~~ni~~~~~  179 (305)
T 2v9p_A          163 -HFWLASLADTRAALVDD  179 (305)
T ss_dssp             -GGGGGGGTTCSCEEEEE
T ss_pred             -ccccccHHHHhhccCcc
Confidence             111224554 7777653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.90  E-value=6.2e-10  Score=121.14  Aligned_cols=57  Identities=26%  Similarity=0.468  Sum_probs=49.5

Q ss_pred             ceeeeeeEEEeCC-----cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~g-----ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .++++++|++++|     |++||+||||||||||+++|+|+.+|++|+.      +.        +..++|+||..
T Consensus       361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i~~~~q~~  422 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNVSMKPQKI  422 (608)
T ss_dssp             EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCEEEECSSC
T ss_pred             cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcEEEecccc
Confidence            4789999999999     8899999999999999999999999999962      21        34689999974

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.90  E-value=5e-10  Score=116.55  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=59.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--------------------------------------CCcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--------------------------------------VTGG  476 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--------------------------------------pt~G  476 (510)
                      .++++++|++.+| +++|+|+|||||||++++|.++..                                      +++|
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~  127 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence            4799999999999 999999999999999999966654                                      5578


Q ss_pred             eEEEcCeecCCcccHHHhhcc-EEEEccCCCc
Q 010435          477 DALIYGFSIRSSVSMTNIQKS-IGVCPQVTLF  507 (510)
Q Consensus       477 ~i~i~g~~i~~~~~~~~~r~~-iG~cpQ~~~L  507 (510)
                      +++++|.++. ..+..++.+. +++++|++.+
T Consensus       128 ~i~ing~~~~-~~~~~~~~~~~i~~~~q~~~l  158 (415)
T 4aby_A          128 AARLSGEVVS-VRELQEWAQGRLTIHWQHSAV  158 (415)
T ss_dssp             EEEETTEEEC-HHHHHHHHTTTEEEETTTCTT
T ss_pred             EEEECCEECC-HHHHHHHHhhceEEecCcccc
Confidence            9999999985 2345666555 8999998754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.90  E-value=4e-11  Score=120.32  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=47.0

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEE-----------------------EeCCcEEEEecCCCCch
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVN-----------------------IAKDQLFCLLGPNGAGK  460 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~-----------------------v~~gei~~llG~nGaGK  460 (510)
                      ...|++++|+|.|.                 ++++++++.                       +++|+++||+|+|||||
T Consensus        41 ~~~i~~~~v~~~y~-----------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGK  103 (312)
T 3aez_A           41 GEQIDLLEVEEVYL-----------------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGK  103 (312)
T ss_dssp             TCCCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCH
T ss_pred             CCeEEeeehhhhhh-----------------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchH
Confidence            34688999999993                 245555543                       89999999999999999


Q ss_pred             hHHHHHHcCCccCCcc
Q 010435          461 TTTISCLTGITPVTGG  476 (510)
Q Consensus       461 sTl~~~l~G~~~pt~G  476 (510)
                      |||+++|+|+++|+.|
T Consensus       104 STL~~~L~gll~~~~G  119 (312)
T 3aez_A          104 STTARVLQALLARWDH  119 (312)
T ss_dssp             HHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhhccccCC
Confidence            9999999999999866

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.88  E-value=7.6e-10  Score=110.59  Aligned_cols=62  Identities=24%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh--hccEEEEccCCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQVTLF  507 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~--r~~iG~cpQ~~~L  507 (510)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.|+....   +...+  |+.+|+++|...+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~  167 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGT  167 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCC
Confidence            68999999999999999999999999999999999999974321   22333  4679999997643

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.86  E-value=8.6e-11  Score=112.37  Aligned_cols=63  Identities=14%  Similarity=0.070  Sum_probs=44.0

Q ss_pred             eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc-------cHHHhhccEEEEccC
Q 010435          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV-------SMTNIQKSIGVCPQV  504 (510)
Q Consensus       441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~-------~~~~~r~~iG~cpQ~  504 (510)
                      ++++.+ ++++|+|||||||||++++|+|++.|++|+|.++|.++....       ....+++.+|+++|.
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            456666 899999999999999999999999999999999998873211       112246789999984

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.84  E-value=4.3e-10  Score=107.08  Aligned_cols=60  Identities=20%  Similarity=0.178  Sum_probs=47.0

Q ss_pred             eEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .-.+++|++++|+||||||||||+++|+|+.+|  ..|.+.+.+.+.+.     ..++.++|+||..
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~   71 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNH   71 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-----TCCBTTTBEECCH
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-----ccccCceEEECCH
Confidence            346789999999999999999999999999986  68999998876532     2356799999964

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.84  E-value=6.5e-10  Score=111.01  Aligned_cols=64  Identities=13%  Similarity=0.129  Sum_probs=43.1

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHh-hccEEEEccCCCc
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~-r~~iG~cpQ~~~L  507 (510)
                      |++.+|++++|+||||||||||+++|+|+.+|++|+|.+   +|.++.....  .. .+.+|+++|.+.+
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~~~g~v~q~p~~  231 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFDFGGYVVDTPGF  231 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEECTTSCEEESSCSS
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEcCCCCEEEECcCC
Confidence            456689999999999999999999999999999999999   8988743221  12 2368999998754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.84  E-value=6.6e-10  Score=103.75  Aligned_cols=60  Identities=20%  Similarity=0.164  Sum_probs=44.4

Q ss_pred             eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      |+++.+|++++|+|||||||||++++|+|+.+    .+.+.|.++.. ......++.+||++|..
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   60 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTR-PKRPGDQEGVDYFFIDE   60 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECS-CCCTTCCBTTTBEECCH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccC-CCchhHhcCceEEeccH
Confidence            56788999999999999999999999999964    58888877642 12223366788998864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.82  E-value=2.9e-10  Score=118.05  Aligned_cols=62  Identities=15%  Similarity=0.036  Sum_probs=43.6

Q ss_pred             eeeeeEEEeCCcE--EEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          437 IKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       437 v~~lsl~v~~gei--~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++++||++++|++  ++|+|+||||||||+++|+|+.        ++|.++... .....++.+|+++|.+.+
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~-~~~~~~~~i~~v~Q~~~l   93 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHT-QPGVQLQSNTYDLQESNV   93 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------C-CSSCEEEEEEEEEEC--C
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCC-CccceEeeEEEEeecCcc
Confidence            9999999999999  9999999999999999999984        344443210 111235689999997643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.82  E-value=4.3e-10  Score=109.97  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      .++++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.-.     .+...++++|
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-----~~~~~~~v~q   77 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-----FKHKKSIVNQ   77 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-----CCCSSSEEEE
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-----cCCcceeeeH
Confidence            3899999  9999999999999999999999999999998 99999999877321     1333456666

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.80  E-value=7.2e-10  Score=101.20  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=40.2

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHH------------HHcCCccCCcceEEEcCe
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTIS------------CLTGITPVTGGDALIYGF  483 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~------------~l~G~~~pt~G~i~i~g~  483 (510)
                      |+||++++||+++|+|||||||||+++            .+.|+..++.|+..+.|.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~   57 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGA   57 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHH
Confidence            689999999999999999999999999            788888888887766653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.77  E-value=1.8e-09  Score=116.07  Aligned_cols=44  Identities=32%  Similarity=0.452  Sum_probs=38.9

Q ss_pred             EEE-eCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-----------EEcCeec
Q 010435          442 VNI-AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-----------LIYGFSI  485 (510)
Q Consensus       442 l~v-~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-----------~i~g~~i  485 (510)
                      |.+ ++||++||+||||||||||+|+|+|+++|++|++           .++|.++
T Consensus        19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i   74 (538)
T 3ozx_A           19 LPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEI   74 (538)
T ss_dssp             CCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeH
Confidence            444 5999999999999999999999999999999998           5667655

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.74  E-value=4.1e-09  Score=106.33  Aligned_cols=65  Identities=23%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCccc---HHHhhcc--EEEEccCCCc
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVS---MTNIQKS--IGVCPQVTLF  507 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~---~~~~r~~--iG~cpQ~~~L  507 (510)
                      ..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.....   ...++++  +.+++|...+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~  194 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA  194 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC
Confidence            347899999999999999999999999999999999999999853222   2333444  4488886544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.74  E-value=2.5e-10  Score=124.71  Aligned_cols=86  Identities=12%  Similarity=0.172  Sum_probs=47.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeee----------eEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-C
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGL----------WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-T  474 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~l----------sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t  474 (510)
                      .+.+++|++.|++..             ...++.+          +++++.   +||+|+|||||||++++|+|+..| +
T Consensus        10 ~i~~~~l~~~~~~~~-------------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~   73 (608)
T 3szr_A           10 SVAENNLCSQYEEKV-------------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG   73 (608)
T ss_dssp             ----------CHHHH-------------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----
T ss_pred             hhhhhhhhHHHHHHH-------------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC
Confidence            578889999996421             0123222          355554   999999999999999999999988 7


Q ss_pred             cceEEEcCeecCC--cccHHHhhccEEEEccCCCc
Q 010435          475 GGDALIYGFSIRS--SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       475 ~G~i~i~g~~i~~--~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +|+|.++|.++..  ..+..++|+.+||+||...+
T Consensus        74 sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l  108 (608)
T 3szr_A           74 SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEI  108 (608)
T ss_dssp             ---CCCSCEEEEEEECSSSSCCEEEESCC---CCC
T ss_pred             CCeEEEcCEEEEEecCCccccceeEEeeecccccC
Confidence            9999999998621  11234678899999997644

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.73  E-value=3.4e-09  Score=105.80  Aligned_cols=71  Identities=17%  Similarity=0.070  Sum_probs=28.0

Q ss_pred             eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC-ccCCcceEEEcCeecCCc
Q 010435          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTGGDALIYGFSIRSS  488 (510)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~-~~pt~G~i~i~g~~i~~~  488 (510)
                      ++|+|.|++.               .++++++|+|      +|+|+||||||||+++|.|. ..|++| +.++|.++.. 
T Consensus         2 ~~l~~~~~~~---------------~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-   58 (301)
T 2qnr_A            2 SNLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-   58 (301)
T ss_dssp             -------------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------
T ss_pred             CCCcceECCE---------------EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-
Confidence            4677888532               5999999998      99999999999999999998 899999 8888887632 


Q ss_pred             ccHHHhhccEEEEccCCC
Q 010435          489 VSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       489 ~~~~~~r~~iG~cpQ~~~  506 (510)
                       .. . ++.+++++|.+.
T Consensus        59 -t~-~-~~~~~~~~q~~~   73 (301)
T 2qnr_A           59 -TV-Q-IEASTVEIEERG   73 (301)
T ss_dssp             ---------CEEEEC---
T ss_pred             -cc-e-EeeEEEEecCCC
Confidence             11 1 456899998654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.72  E-value=3e-09  Score=101.71  Aligned_cols=37  Identities=22%  Similarity=0.169  Sum_probs=22.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc-CCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT-GIT  471 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~-G~~  471 (510)
                      .-.+++||++++|++++|+|||||||||++++|+ |++
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4678999999999999999999999999999999 998

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.72  E-value=2e-09  Score=99.41  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=37.3

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++|++++|+|+|||||||++++|+|.  ++.|.+.++|.++
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~   45 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL   45 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence            4789999999999999999999999998  7899999998765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.69  E-value=5.4e-09  Score=104.34  Aligned_cols=62  Identities=21%  Similarity=0.227  Sum_probs=45.3

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHhh-ccEEEEccCCCc
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQ-KSIGVCPQVTLF  507 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~r-~~iG~cpQ~~~L  507 (510)
                      ++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|.++....  ...+ +.+|+++|.+.+
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~  226 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGF  226 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCc
Confidence            45679999999999999999999999 99999999999   998874321  1222 368999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.69  E-value=1.8e-09  Score=107.81  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=37.7

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHhhccEEEEccCCCcc
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQVTLFS  508 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~r~~iG~cpQ~~~L~  508 (510)
                      +++.+|++++|+|+||+|||||+|+|+|+.+|+.|+|.+   +|.++....  ...+..+|+++|.+.+.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~  235 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFS  235 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCS
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCcc
Confidence            556789999999999999999999999999999999999   887764211  12222379999987553

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.64  E-value=1.4e-08  Score=103.38  Aligned_cols=65  Identities=17%  Similarity=0.241  Sum_probs=46.0

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-CCcceEEEc-CeecCCcccHHHhhccEEEEccCCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIY-GFSIRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-pt~G~i~i~-g~~i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      -++++++. .+|++++|+|+||||||||+++|+|+.+ |+.|+|.++ |.+..  +   ..++.++++||...
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~--t---t~~~~i~~v~q~~~  271 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH--T---TTAARLYHFPHGGD  271 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCE
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc--c---eEEEEEEEECCCCE
Confidence            46677764 4899999999999999999999999999 999999997 76642  1   34568999999753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.63  E-value=7e-09  Score=98.28  Aligned_cols=60  Identities=20%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccC-------CcceEEEcCeecCCcccHHHhhccEEEEc
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGFSIRSSVSMTNIQKSIGVCP  502 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-------t~G~i~i~g~~i~~~~~~~~~r~~iG~cp  502 (510)
                      .+++||+++|+|||||||||++++|+|...+       ..|.+++++.+......+..+.+..|+.|
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~   87 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP   87 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCH
Confidence            7999999999999999999999999996554       44588998876422223333444444433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.58  E-value=5.4e-09  Score=97.68  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=36.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc-----cCCcceEEE
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALI  480 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~-----~pt~G~i~i  480 (510)
                      .+++++++|.|+.                .++++  |.+++|+.++|+|+||||||||++.|+|..     .|+.|++..
T Consensus         3 ~l~~~~~~~~~~~----------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A            3 NLNYQQTHFVMSA----------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             --------CEEEE----------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             chhhhhhhheeec----------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            3678999999942                36777  889999999999999999999999999998     888898765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.58  E-value=6.3e-09  Score=111.11  Aligned_cols=50  Identities=22%  Similarity=0.305  Sum_probs=48.0

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .+++++++.+++|++++|+||||||||||+++|+|+++|++|.+.+.|.+
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            58999999999999999999999999999999999999999999999865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.58  E-value=1.2e-08  Score=106.10  Aligned_cols=76  Identities=20%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..+.+++|++.|++.               .+++|++|+|      +|+|+||||||||+++|+|...++.|.   +|.+
T Consensus        10 ~~l~~~~l~~~y~~~---------------~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~   65 (418)
T 2qag_C           10 GYVGFANLPNQVYRK---------------SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPS   65 (418)
T ss_dssp             -----CCCCCCTTTT---------------TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC
T ss_pred             CcEEEEecceeECCE---------------EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcc
Confidence            358899999999542               5999999998      999999999999999999998866652   3332


Q ss_pred             cCCcccHHHhhccEEEEccCCC
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      +....  ...++.+|+++|.+.
T Consensus        66 ~~~~~--t~~~~~i~~v~q~~~   85 (418)
T 2qag_C           66 HRIKK--TVQVEQSKVLIKEGG   85 (418)
T ss_dssp             -------CCEEEEEECC-----
T ss_pred             cCCcc--ceeeeeEEEEEecCC
Confidence            21100  011356888888654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.57  E-value=7.9e-09  Score=100.35  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHc---CCccCCcceEE--------EcCeecCCcccHHHhhccEEEEccCC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~--------i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ++|++++|+|+|||||||++++|+   |+..+++|.++        .+|.++.+.....++++.+|+++|.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            789999999999999999999999   99999999999        99998854456778899999999753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.55  E-value=7.6e-09  Score=96.68  Aligned_cols=40  Identities=30%  Similarity=0.355  Sum_probs=32.0

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCcc-------------CCcceEEEcCeec
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI  485 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~-------------pt~G~i~i~g~~i  485 (510)
                      +++|++++|+||||||||||+++|+|+++             |..|+  ++|.++
T Consensus         1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~   53 (198)
T 1lvg_A            1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDY   53 (198)
T ss_dssp             ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTB
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceE
Confidence            35799999999999999999999999876             77887  577765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.54  E-value=6.8e-09  Score=106.68  Aligned_cols=62  Identities=23%  Similarity=0.251  Sum_probs=51.5

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      ++++++  +++|++++|+||||||||||++.|+|+++|+ +|+|.+.|.++.  .   ..++.+++++|.
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~---~~~~~~~~v~Q~  189 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--Y---VFKHKKSIVNQR  189 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--S---CCCCSSSEEEEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--h---hhccCceEEEee
Confidence            455554  7899999999999999999999999999998 899988776652  1   346788999993

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.52  E-value=6.9e-09  Score=102.98  Aligned_cols=51  Identities=12%  Similarity=0.036  Sum_probs=45.5

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i  485 (510)
                      .+|+++++++++||+++|+|+|||||||+++.|+|...|++| .+.+.+.+.
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            589999999999999999999999999999999999999988 776554443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.51  E-value=4.4e-08  Score=108.36  Aligned_cols=51  Identities=24%  Similarity=0.333  Sum_probs=43.7

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH----------------------cCCccCCcceEEEcCeecC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL----------------------TGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l----------------------~G~~~pt~G~i~i~g~~i~  486 (510)
                      .+|+|+||+|++||+++|+||||||||||+++|                      .|+.++ +|.+.++|.++.
T Consensus       336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~  408 (670)
T 3ux8_A          336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIG  408 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSC
T ss_pred             cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCC
Confidence            589999999999999999999999999999875                      355554 468899988774

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.50  E-value=2.3e-09  Score=109.90  Aligned_cols=46  Identities=17%  Similarity=0.287  Sum_probs=42.8

Q ss_pred             eeeeeeEEEeC--CcEEEEecCCCCchhHHHHHHcCCccCCc----ceEEEc
Q 010435          436 AIKGLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPVTG----GDALIY  481 (510)
Q Consensus       436 av~~lsl~v~~--gei~~llG~nGaGKsTl~~~l~G~~~pt~----G~i~i~  481 (510)
                      ..+.|+++|++  |+.++|+|+||||||||+++|+|+++|++    |+++++
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~  208 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF  208 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            35679999999  99999999999999999999999999999    999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.49  E-value=9.1e-09  Score=94.00  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=42.2

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcc--cHHHhh-ccEE----EEccCCC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSV--SMTNIQ-KSIG----VCPQVTL  506 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~--~~~~~r-~~iG----~cpQ~~~  506 (510)
                      ++++|+|+|||||||+++.|.|+++|+   .|+|.++|.++.+..  ..+.+| +.+|    +++|...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~   71 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL   71 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE
Confidence            589999999999999999999999998   899999999864211  144666 4678    8888653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.45  E-value=2.2e-08  Score=92.96  Aligned_cols=37  Identities=32%  Similarity=0.489  Sum_probs=34.7

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      ||+++|+|+||||||||+++|+|+++ ++| +.++|.++
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~   37 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT   37 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence            78999999999999999999999999 999 99988765

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.43  E-value=5.6e-08  Score=111.57  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=41.7

Q ss_pred             ceEEEee-----eEEEcCCCCCcccccccCCCCCcceeeeeeEEEeC-------CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          405 VAVQIRG-----LVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK-------DQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       405 ~~i~~~~-----l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~-------gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ..+++++     |.+.|.+.              ..+++|++|++++       |++++|+|||||||||+++++ |+..
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~--------------~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGD--------------DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEEECCCC------CC--------------CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEEEEeccccEEEEEecCC--------------ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4589999     88888432              1589999999987       999999999999999999999 9876


Q ss_pred             C
Q 010435          473 V  473 (510)
Q Consensus       473 p  473 (510)
                      +
T Consensus       814 ~  814 (1022)
T 2o8b_B          814 V  814 (1022)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.43  E-value=8.1e-09  Score=107.47  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=44.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++ + .++|++++|+||||||||||+++|.|+++|++|+|.+.|.++
T Consensus       157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            367777 4 389999999999999999999999999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.41  E-value=4.9e-08  Score=91.07  Aligned_cols=63  Identities=16%  Similarity=0.076  Sum_probs=42.3

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      .+-+..+..++|++++|+|+|||||||++++|+|.+    |.+.++|.++..  .....+...|+.+|.
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~   80 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTD   80 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCH
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCC
Confidence            444444667889999999999999999999999987    999999988742  212223346777774

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.39  E-value=6.8e-08  Score=90.71  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccC---CcceEEEcCeecC
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFSIR  486 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i~g~~i~  486 (510)
                      .++|++++|+|+||||||||+++|+|+++|   +.|.+.++|..+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            478999999999999999999999999986   5799999998763

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.38  E-value=1.1e-08  Score=95.51  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=46.6

Q ss_pred             cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE--EEcCeecC
Q 010435          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA--LIYGFSIR  486 (510)
Q Consensus       434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i--~i~g~~i~  486 (510)
                      +.+.++.++..++|++++|+|+|||||||+.++|++.+. .+|.+  +++|.+++
T Consensus        12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            357788888899999999999999999999999999998 78988  99988763

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.36  E-value=2.6e-08  Score=94.21  Aligned_cols=51  Identities=18%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             ceeeeeeE-EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl-~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+||++.. .+++|++++|+|+|||||||+++.|++...+++|.+.+.+.+.
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            58999998 8999999999999999999999999999988889988877654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.35  E-value=1.7e-07  Score=105.11  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHH-HcCCc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISC-LTGIT  471 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~-l~G~~  471 (510)
                      +|+|+||+|++||++||+|+||||||||+++ |.|++
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            6999999999999999999999999999997 77554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.31  E-value=1.8e-07  Score=89.19  Aligned_cols=61  Identities=16%  Similarity=0.195  Sum_probs=47.1

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcC--CccC-----CcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTG--ITPV-----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G--~~~p-----t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      .+++|++++|+|+|||||||+++.|++  ..+|     +.|.+++++.+..+..++.+.++.+|+.+|
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~   87 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS   87 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH
Confidence            589999999999999999999999999  5665     678999998763222234445556676664

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.30  E-value=4.1e-08  Score=96.57  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=52.7

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      .+++++++.+++|  ++|.||||+||||++++|+|...+  |.+.++|.++.+ ....+.++.+++++|.
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~-~~~~~~~~~i~~vf~~   98 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLN-MYVGESERAVRQVFQR   98 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCS-STTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHh-hhhhHHHHHHHHHHHH
Confidence            5899999999999  999999999999999999999877  799999988743 2233445556666663

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.28  E-value=3e-07  Score=92.41  Aligned_cols=65  Identities=15%  Similarity=0.312  Sum_probs=50.6

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc----------------------------------------------
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----------------------------------------------  471 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~----------------------------------------------  471 (510)
                      +++++++.+| +++|+|+|||||||+++.|..+.                                              
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~   94 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA   94 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence            3567888888 99999999999999999998432                                              


Q ss_pred             ----cCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          472 ----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       472 ----~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                          .+.+|.++++|.+++ ..+.....+.+|++||.
T Consensus        95 r~~~~~~~~~~~ing~~~~-~~~~~~~~~~~g~~~~~  130 (322)
T 1e69_A           95 RELKRTGENTYYLNGSPVR-LKDIRDRFAGTGLGVDF  130 (322)
T ss_dssp             EEEETTSCEEEEETTEEEC-HHHHHHHTTTSSTTTTC
T ss_pred             EEEEcCCceEEEECCcCcc-HHHHHHHHHHcCCChhh
Confidence                334578899998874 35566667778876664

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.27  E-value=2.7e-07  Score=92.68  Aligned_cols=69  Identities=17%  Similarity=0.214  Sum_probs=56.4

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh-----hccEEEE-ccCC
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI-----QKSIGVC-PQVT  505 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~-----r~~iG~c-pQ~~  505 (510)
                      +++++|.+++|++++++|+||+|||||+..|++.+.+..|++.+.+.|+....   +...+     +..++++ +|..
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~  172 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL  172 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence            36888999999999999999999999999999999999999999998875321   12333     5679999 6653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.25  E-value=6.5e-09  Score=105.19  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             ceeeeeeEEEeCC-------cEEEEecCCCCchhHHHHHHcCCc----cCCcceEEEcCeecCCcccHHHh-hccEEEEc
Q 010435          435 HAIKGLWVNIAKD-------QLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNI-QKSIGVCP  502 (510)
Q Consensus       435 ~av~~lsl~v~~g-------ei~~llG~nGaGKsTl~~~l~G~~----~pt~G~i~i~g~~i~~~~~~~~~-r~~iG~cp  502 (510)
                      .+++++++.+++|       +.++|.||||+||||++++|+|..    .+++|.+..+|.++.  .-.... ++.+++++
T Consensus        32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~--~~~~~~~~~~v~~iD  109 (334)
T 1in4_A           32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA--AILTSLERGDVLFID  109 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH--HHHHHCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH--HHHHHccCCCEEEEc
Confidence            5889999999877       899999999999999999999998    778888877766552  111222 46799999


Q ss_pred             cCCCc
Q 010435          503 QVTLF  507 (510)
Q Consensus       503 Q~~~L  507 (510)
                      |.+.|
T Consensus       110 E~~~l  114 (334)
T 1in4_A          110 EIHRL  114 (334)
T ss_dssp             TGGGC
T ss_pred             chhhc
Confidence            97655

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.23  E-value=1.4e-07  Score=96.19  Aligned_cols=66  Identities=20%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             ceeeeeeE-------EEeCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWV-------NIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl-------~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      ..++++.+       .+.+|++++|+||||||||||+++|+|+++|+ +|.+...+.++.  .   ..+...++++|..
T Consensus       104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~---~~~~~~~~v~q~~  177 (356)
T 3jvv_A          104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--F---VHESKKCLVNQRE  177 (356)
T ss_dssp             CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--S---CCCCSSSEEEEEE
T ss_pred             CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--h---hhhccccceeeee
Confidence            35556555       67899999999999999999999999999998 566655444431  1   1233445666643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.20  E-value=3e-07  Score=84.62  Aligned_cols=36  Identities=36%  Similarity=0.524  Sum_probs=32.5

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      |++++|+|+|||||||++++|++   |.+|.++++|.++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~   37 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII   37 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence            68999999999999999999987   6789999998664

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.19  E-value=1.2e-07  Score=91.97  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=35.3

Q ss_pred             ceEEEeee-EEEcCCCCCcccccccCCCCCcceeeeeeEEEeC---CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          405 VAVQIRGL-VKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK---DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       405 ~~i~~~~l-~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~---gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ..++++|+ +|.|++.              ..+++++||++++   |++++|+|++||||||+.++|++.+
T Consensus        16 ~~l~~~~~~~~~~~~~--------------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEE--------------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCc--------------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            36899999 9999322              2699999999999   9999999999999999999998854

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.15  E-value=2.8e-07  Score=93.76  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=45.0

Q ss_pred             ceeeee-eEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCc----ce-EEEcCeec
Q 010435          435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTG----GD-ALIYGFSI  485 (510)
Q Consensus       435 ~av~~l-sl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~----G~-i~i~g~~i  485 (510)
                      ..+|.+ ...+++|++++|.|+|||||||+++.++|..  +|++    |+ ++|++.+.
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            467776 6899999999999999999999999999998  7776    68 89998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.15  E-value=7.7e-07  Score=82.72  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      +++++|++++|+|+|||||||++++|++.+.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            36789999999999999999999999999977655

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.14  E-value=8.2e-07  Score=81.06  Aligned_cols=42  Identities=19%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             ee--eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          436 AI--KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       436 av--~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      .+  +++++++.+| +++|+|+|||||||++++|.+++.++.|..
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~   57 (182)
T 3kta_A           14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA   57 (182)
T ss_dssp             GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred             eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence            55  7889999999 999999999999999999999988877654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.07  E-value=4.3e-07  Score=87.45  Aligned_cols=39  Identities=28%  Similarity=0.424  Sum_probs=35.8

Q ss_pred             CCcEEEEecCCCCchhHHHHHHc---CCccCCcceEEEcCee
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIYGFS  484 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~i~g~~  484 (510)
                      ++++++|+|+|||||||++++|+   |+..|+.|++.++|.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~   67 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK   67 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence            36899999999999999999999   9999999999887754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.06  E-value=7e-07  Score=91.94  Aligned_cols=42  Identities=12%  Similarity=0.082  Sum_probs=37.7

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcC------------CccCCcceEEEcCee
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTG------------ITPVTGGDALIYGFS  484 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G------------~~~pt~G~i~i~g~~  484 (510)
                      ++++|+.+||+|+||||||||+++|+|            ...|+.|.+.+.|..
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r   69 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER   69 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence            457899999999999999999999999            667999999998743

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.06  E-value=1.1e-06  Score=99.04  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      +|+|+||+|++||++||+|+||||||||+++|.
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            799999999999999999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.06  E-value=9.7e-07  Score=88.56  Aligned_cols=39  Identities=26%  Similarity=0.185  Sum_probs=36.6

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCc--------cCCcceEEEcCeecC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGIT--------PVTGGDALIYGFSIR  486 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~--------~pt~G~i~i~g~~i~  486 (510)
                      ++++|+|+|||||||++++|.|+.        .|+.|++.|+|.++.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            689999999999999999999997        789999999999875

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.04  E-value=1.9e-06  Score=89.47  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      -++++|+++.|++++|+|+||||||||+++|+|..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            57999999999999999999999999999999983

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.02  E-value=3.7e-07  Score=98.14  Aligned_cols=43  Identities=23%  Similarity=0.231  Sum_probs=39.0

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEE-EcCeec
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DAL-IYGFSI  485 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~-i~g~~i  485 (510)
                      .+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            5789999999999999999999999999999987 785 888765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.02  E-value=1.2e-06  Score=81.85  Aligned_cols=30  Identities=23%  Similarity=0.230  Sum_probs=26.8

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      .++|+++||+|+|||||||++++|+|++.|
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~   32 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE   32 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.02  E-value=1.2e-06  Score=77.79  Aligned_cols=46  Identities=22%  Similarity=0.312  Sum_probs=39.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCeecC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSIR  486 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~i~  486 (510)
                      .+++++     +|++++|.|+||+||||++++++|...+ +|  .+++++.++.
T Consensus        29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP   76 (149)
T ss_dssp             HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred             HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence            466666     8999999999999999999999999987 58  8888887663

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.01  E-value=4.5e-07  Score=85.78  Aligned_cols=58  Identities=17%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc---cCCcceEEE--------cCeecCCcccHHHhhccEEEEccC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALI--------YGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~---~pt~G~i~i--------~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      +.+++|+|++||||||+.++|.+.+   .++.|+++.        +|.++.+.....++++.+|+.+|.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   73 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS   73 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence            5689999999999999999999766   788999988        787764333466788889999885

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.99  E-value=2.8e-06  Score=96.43  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=38.5

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH--------cCCccCCcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL--------TGITPVTGG  476 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l--------~G~~~pt~G  476 (510)
                      .+++|++|++.+|++++|+|||||||||+++++        .|.+-|.++
T Consensus       650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~  699 (934)
T 3thx_A          650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES  699 (934)
T ss_dssp             CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred             eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence            589999999999999999999999999999999        888777654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.97  E-value=1.7e-06  Score=79.18  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEE
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDAL  479 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~  479 (510)
                      .+|++++|+|||||||||++++|.|..++ ..|.+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            46899999999999999999999998864 445543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.97  E-value=1.7e-06  Score=96.44  Aligned_cols=41  Identities=27%  Similarity=0.270  Sum_probs=37.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-CCcceE
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDA  478 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-pt~G~i  478 (510)
                      .+++|++|+   |++++|+|||||||||++++++|+.. +..|.+
T Consensus       567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            689999999   99999999999999999999999874 667753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.96  E-value=2.7e-06  Score=81.01  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=44.3

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC-----cccHHH----hhccEEEEccCC
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-----SVSMTN----IQKSIGVCPQVT  505 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~-----~~~~~~----~r~~iG~cpQ~~  505 (510)
                      ..++|++++|.|+|||||||++++|.|.    .|++.+.|.+...     .....+    .++.+++++|..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~   83 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSY   83 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHH
Confidence            4478999999999999999999999998    7899999877521     012221    245678888753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.96  E-value=2.6e-06  Score=88.00  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             eeeee-eEEEeCCcEEEEecCCCCchhHHHH--HHcCCccCCcc-----eEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          436 AIKGL-WVNIAKDQLFCLLGPNGAGKTTTIS--CLTGITPVTGG-----DALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       436 av~~l-sl~v~~gei~~llG~nGaGKsTl~~--~l~G~~~pt~G-----~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      .+|.+ .=.+++|+++.|.|+||+||||+++  ++.+..+++.|     .+++++.+..+...+.++++++|+.||
T Consensus       166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~  241 (400)
T 3lda_A          166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD  241 (400)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred             hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence            44443 1379999999999999999999999  45688887555     899999874322334455667777665

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.96  E-value=2e-06  Score=97.43  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+++|++|++++|++++|+|||||||||+++++++
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            58999999999999999999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.95  E-value=1.6e-06  Score=80.85  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=37.8

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++|++++|.|+|||||||++++|.+.+++..|.+.+.+.|.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            567899999999999999999999999999999998876654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.95  E-value=1.6e-06  Score=78.63  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      .+|++++|+|+|||||||+.++|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            468999999999999999999999875    88999987764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.95  E-value=4.8e-07  Score=92.77  Aligned_cols=62  Identities=27%  Similarity=0.418  Sum_probs=47.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT  505 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~  505 (510)
                      .+++++++++++|++++|.||||+||||++++|+|.   .+|++....  ..    .+..+..+|++||..
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~----~~~~~~~lg~~~q~~  218 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP----LDRLNFELGVAIDQF  218 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC----TTTHHHHHGGGTTCS
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc----chhHHHHHHHhcchh
Confidence            589999999999999999999999999999999985   467766511  11    112233467777755

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.93  E-value=5.6e-06  Score=93.66  Aligned_cols=30  Identities=27%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~  464 (510)
                      .+|+|+||++++||++||+|+||||||||+
T Consensus       598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence            479999999999999999999999999997

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.93  E-value=4.6e-06  Score=84.95  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=39.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC-------------CccCCcceEEEcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-------------ITPVTGGDALIYG  482 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G-------------~~~pt~G~i~i~g  482 (510)
                      +.++++++++.+| +++|+|||||||||++++|.+             ++...++.+.|.+
T Consensus        15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~~g~~R~~~~~~lI~~g~~~~~V~~   74 (359)
T 2o5v_A           15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRA   74 (359)
T ss_dssp             TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHSCCCCSSGGGGBCTTCSCEEEEE
T ss_pred             cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhccCCCCCCCHHHHhccCCCcEEEEE
Confidence            3678999999999 999999999999999999997             5666666666655

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.91  E-value=4.1e-06  Score=93.80  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .+++|++|+ ++|++++|+|||||||||++++++|+..
T Consensus       596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            589999999 9999999999999999999999999753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.89  E-value=2.5e-06  Score=85.02  Aligned_cols=48  Identities=23%  Similarity=0.223  Sum_probs=43.3

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      .+++..++|++++++|+||+|||||+..|+|.+.++.|++.+.+.|..
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            345667889999999999999999999999999999999999998874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.89  E-value=3e-06  Score=90.75  Aligned_cols=72  Identities=19%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC----------------------c----------------cCCcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI----------------------T----------------PVTGG  476 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~----------------------~----------------~pt~G  476 (510)
                      ..++++++++.+| +.+|+|+|||||||++..|.++                      +                ...++
T Consensus        49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~  127 (517)
T 4ad8_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (517)
T ss_dssp             TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCC
T ss_pred             cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCc
Confidence            3678899999999 9999999999999999999544                      3                23467


Q ss_pred             eEEEcCeecCCcccHHHh-hccEEEEccCCCcc
Q 010435          477 DALIYGFSIRSSVSMTNI-QKSIGVCPQVTLFS  508 (510)
Q Consensus       477 ~i~i~g~~i~~~~~~~~~-r~~iG~cpQ~~~L~  508 (510)
                      +++++|..+. ..+..++ ...+.+.+|++.+.
T Consensus       128 ~~~ing~~v~-~~~l~~~~~~li~i~~q~~~~~  159 (517)
T 4ad8_A          128 AARLSGEVVS-VRELQEWAQGRLTIHWQHSAVS  159 (517)
T ss_dssp             EEESSSSBCC-HHHHHHHHTTTEEEESGGGGGT
T ss_pred             EEEECCEECC-HHHHHHHhhhheEEeCCchHHh
Confidence            8999998874 2234444 45679999987553

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.87  E-value=4.8e-07  Score=87.40  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=42.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++++++|  +.|.||||+||||++++|+|...  .|.+.++|.++
T Consensus        39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~   85 (254)
T 1ixz_A           39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF   85 (254)
T ss_dssp             HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence            4899999999999  88999999999999999999875  79999998765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.86  E-value=1.8e-06  Score=78.79  Aligned_cols=36  Identities=19%  Similarity=0.177  Sum_probs=32.0

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      +.+.+|++++|.||||+||||+++.++|...|++|.
T Consensus        33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            455679999999999999999999999999877773

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.85  E-value=5.3e-07  Score=88.46  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=42.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++.+++|  +.|+||||+||||++++|+|...  .|.+.++|.++
T Consensus        63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~  109 (278)
T 1iy2_A           63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  109 (278)
T ss_dssp             HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence            5899999999999  88999999999999999999885  79999998765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.85  E-value=4.9e-06  Score=77.41  Aligned_cols=42  Identities=17%  Similarity=0.312  Sum_probs=34.1

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCcc-------------CCcceEEEcCeec
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI  485 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~-------------pt~G~i~i~g~~i  485 (510)
                      +...+|++++|+|||||||||+++.|.+..+             |..|+  ++|.+.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y   68 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEY   68 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSC
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccc
Confidence            3445899999999999999999999999876             66776  677664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.84  E-value=6.6e-06  Score=76.38  Aligned_cols=37  Identities=24%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus        13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            6999999999999999999999999999999999765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.83  E-value=4.1e-06  Score=83.10  Aligned_cols=48  Identities=25%  Similarity=0.290  Sum_probs=44.3

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~  487 (510)
                      ++++|+  +|++++++|+||+||||+...|+|.+.+..|++.+.+.|.+.
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            677887  999999999999999999999999999999999999988753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.81  E-value=8.6e-06  Score=74.90  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=32.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccC-----------CcceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPV-----------TGGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~p-----------t~G~i~i~g~~i  485 (510)
                      .++|+|+||||||||++.++|...+           +.|++.++|.++
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            5789999999999999999998765           578999999765

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.81  E-value=4.8e-06  Score=76.26  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=23.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      +++|+||||||||||+++|+|++...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            57999999999999999999998643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.81  E-value=7.7e-06  Score=76.62  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      ++|++++|+|||||||||++++|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999999886

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.80  E-value=1.9e-06  Score=86.29  Aligned_cols=48  Identities=13%  Similarity=0.173  Sum_probs=40.0

Q ss_pred             ceeeeeeEEEeCCc------EEEEecCCCCchhHHHHHHcCCcc--CCcceEEEcC
Q 010435          435 HAIKGLWVNIAKDQ------LFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG  482 (510)
Q Consensus       435 ~av~~lsl~v~~ge------i~~llG~nGaGKsTl~~~l~G~~~--pt~G~i~i~g  482 (510)
                      .++++++..+.+++      ++||.|+|||||||++++|.|++.  |++|.+.+-+
T Consensus        74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~  129 (321)
T 3tqc_A           74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT  129 (321)
T ss_dssp             HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence            57788888887776      999999999999999999999987  5677755433

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.74  E-value=3.2e-06  Score=85.58  Aligned_cols=51  Identities=14%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++++.+.+|++++++|+|||||||+++.|+|.+.+..|++.+-+.|.
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            588999999999999999999999999999999999998889988877665

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.72  E-value=3.6e-06  Score=78.85  Aligned_cols=48  Identities=21%  Similarity=0.091  Sum_probs=41.2

Q ss_pred             ceeeeeeE-EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl-~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .++|++.. .+++|++++|.|+||+||||+++.+++  .+..+.+++++.+
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~   55 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG   55 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence            57888876 799999999999999999999999999  5556677887654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.71  E-value=1.1e-05  Score=80.09  Aligned_cols=42  Identities=26%  Similarity=0.356  Sum_probs=37.5

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeecC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSIR  486 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i~  486 (510)
                      .+|++++++|+||+|||||+..|++.+.+++| +|.+-+.|..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            47999999999999999999999999999888 7887776663

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.70  E-value=6.8e-06  Score=89.65  Aligned_cols=64  Identities=19%  Similarity=0.301  Sum_probs=55.0

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      .+++++++.+.+|+.+.|.||||+||||+++.|+|+.+++. |.+.+.+.+..      .....+++|||-
T Consensus        48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~------~~~p~i~~~p~g  112 (604)
T 3k1j_A           48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED------ENMPRIKTVPAC  112 (604)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC------TTSCEEEEEETT
T ss_pred             hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc------ccCCcEEEEecc
Confidence            58999999999999999999999999999999999999988 88888876652      234568888764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.70  E-value=1.7e-05  Score=80.95  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=30.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .+++++++++.+| +++|+|||||||||++++|+
T Consensus        12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4688899999998 89999999999999999998

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.66  E-value=5.2e-06  Score=79.07  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=45.6

Q ss_pred             ceeeee-eEEEeCCcEEEEecCCCCchhHHH-HHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTI-SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       435 ~av~~l-sl~v~~gei~~llG~nGaGKsTl~-~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      ..+|++ .-.+++|+++.|.|+||+||||++ +++.+..+...+.+++++..-  ..++.+..+.+|+.+|
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~--~~~~~~~~~~~g~~~~   78 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH--PVQVRQNMAQFGWDVK   78 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC--HHHHHHHHHTTTCCCH
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHcCCCHH
Confidence            467777 678999999999999999999994 555566565556677766432  2233333334566554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.66  E-value=1.5e-05  Score=83.26  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=29.5

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      +++.+|++++|+|||||||||++++|+++..++++
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~   55 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN   55 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence            45677999999999999999999999999988763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.66  E-value=1.1e-05  Score=81.34  Aligned_cols=55  Identities=24%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             EEEecCCCCchhHHHHHHcC-CccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +.|.||||+||||+++.|+| +..|+.|++.++|.+...   ....+..+++++|.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~---~~~~~~~~~~~~~~~~~   94 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT---ASNRKLELNVVSSPYHL   94 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc---cccccceeeeecccceE
Confidence            78999999999999999999 889999999999987632   12236778888887644

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.63  E-value=2.2e-05  Score=72.45  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc-----CC------cceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP-----VT------GGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~-----pt------~G~i~i~g~~i  485 (510)
                      .++|+|+||||||||++.|+|...     ||      .|++.++|.++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            478999999999999999999743     43      57899999754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.55  E-value=2.1e-05  Score=79.85  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=37.0

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      +++.+++|+|++|||||||++.|+|...+++|++.|.+.|.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp  112 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP  112 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence            35679999999999999999999999999999999988765

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.51  E-value=1.2e-05  Score=86.48  Aligned_cols=67  Identities=22%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      .+++++++++ +|++++|+||||+||||+++.|++...++.|++.+.|..... ......++.+|..+|
T Consensus        97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~-~~~g~~~~~ig~~~~  163 (543)
T 3m6a_A           97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES-EIRGHRRTYVGAMPG  163 (543)
T ss_dssp             HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------------
T ss_pred             HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh-hhhhHHHHHhccCch
Confidence            5788888888 899999999999999999999999999999999888743211 111223455676665

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.49  E-value=5.4e-05  Score=70.41  Aligned_cols=31  Identities=26%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      =++++|++++|.|++||||||+.++|.+.++
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3567889999999999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.48  E-value=2.5e-05  Score=83.72  Aligned_cols=43  Identities=21%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce--EEEcCee
Q 010435          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD--ALIYGFS  484 (510)
Q Consensus       441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~--i~i~g~~  484 (510)
                      +.++++|++++|.|+|||||||+++.++|..+|+ |+  +++.+.+
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee  319 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE  319 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence            4499999999999999999999999999999886 65  5776654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.38  E-value=3e-05  Score=85.45  Aligned_cols=62  Identities=23%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             eEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      ++.+++++.++|+||+|+|||||++.|++...+  +.|+| .+|..+.+ ....+.++.+++.+|.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~~~   66 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRTGV   66 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSCEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEecc
Confidence            456788999999999999999999999977655  67888 67776653 3445556677777664

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.34  E-value=4.4e-05  Score=69.27  Aligned_cols=40  Identities=30%  Similarity=0.262  Sum_probs=33.4

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCeec
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI  485 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~i  485 (510)
                      ++|++++|.|++||||||+.++|.+.+++ .|  .+.++|..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            47899999999999999999999998876 56  667777554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.33  E-value=6.6e-05  Score=77.98  Aligned_cols=48  Identities=25%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~  487 (510)
                      ++++++  +|++++++|+||+||||+...|++.+.+..|++.+.+.|...
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            567777  899999999999999999999999999999999999888753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.33  E-value=6.2e-05  Score=67.62  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      .|++++|+|+|||||||+.++|++.+.+    .++++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d   36 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSD   36 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEecc
Confidence            4688999999999999999999997654    566653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.30  E-value=5.1e-05  Score=75.21  Aligned_cols=48  Identities=23%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             ee-eeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          438 KG-LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       438 ~~-lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++ ++++.+ |++++++|+||+||||++..|++.+.+..|++.+.+.|.+
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            35 777766 9999999999999999999999999999999999888874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.21  E-value=0.00013  Score=71.33  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=28.2

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      .+++|++++|+|+|||||||++..+++....
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            5889999999999999999999999986654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.19  E-value=0.00017  Score=63.86  Aligned_cols=29  Identities=21%  Similarity=0.459  Sum_probs=23.2

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      +.++++.+ .+++|+|||||||||++..|.
T Consensus        16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence            34445544 489999999999999999986

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.15  E-value=6.1e-05  Score=70.42  Aligned_cols=44  Identities=18%  Similarity=0.093  Sum_probs=39.0

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCeec
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI  485 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~i  485 (510)
                      +.+++|.++.|.|++||||||+.+.|.+.+.|+.|  .+.++|.++
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            44678999999999999999999999999988888  888987655

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.14  E-value=1.1e-05  Score=81.24  Aligned_cols=65  Identities=18%  Similarity=0.294  Sum_probs=48.8

Q ss_pred             ceeeeeeEEEeCCcE--EEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEE
Q 010435          435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG  499 (510)
Q Consensus       435 ~av~~lsl~v~~gei--~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG  499 (510)
                      .+++.++..+++|++  +.+.||+|+||||+++++++.+.+..+++.+.+.+..+....+.+|+.++
T Consensus        32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~   98 (340)
T 1sxj_C           32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIK   98 (340)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHH
Confidence            588999999999998  99999999999999999999988777765554444322223445554443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.12  E-value=0.00024  Score=64.89  Aligned_cols=49  Identities=22%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC----C----ccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG----I----TPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G----~----~~pt~G~i~i~g~~  484 (510)
                      .+++++++..++. .++++|++|+||||+++.+++    .    ..++.+++.++|..
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~   68 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK   68 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence            4889999998887 457999999999999999997    2    23345667777754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.02  E-value=0.00025  Score=67.42  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=32.8

Q ss_pred             ceeeeeeEEEe---CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          435 HAIKGLWVNIA---KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       435 ~av~~lsl~v~---~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      .-+.++++.+.   +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            34666677665   8999999999999999999999999988 6777654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.01  E-value=0.00028  Score=73.70  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc------------CCcceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~------------pt~G~i~i~g~~i  485 (510)
                      .++|+|+||+|||||++.|+|...            +.+|.+.++|.++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            689999999999999999999854            6679999999864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.01  E-value=0.00042  Score=70.59  Aligned_cols=37  Identities=27%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc-----------CCcceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~-----------pt~G~i~i~g~~i  485 (510)
                      +++|+|++||||||+++.|+|...           |+.|++.++|.++
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            488999999999999999999876           6779999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.00  E-value=0.00027  Score=65.42  Aligned_cols=29  Identities=34%  Similarity=0.489  Sum_probs=24.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      +++|+|+|||||||+.++|+++     |...+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~   32 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA   32 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence            6899999999999999999983     5555554

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.00  E-value=0.00017  Score=66.53  Aligned_cols=49  Identities=24%  Similarity=0.281  Sum_probs=39.5

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--------ccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--------~~pt~G~i~i~g~~  484 (510)
                      .+++++++..+++. ++++|++|+||||+++.+++-        ..++.+++.++|..
T Consensus        14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A           14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            48899999888875 579999999999999999972        33456777777754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.99  E-value=0.00011  Score=74.75  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceee--------------eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK--------------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~--------------~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .+.++||+..|+..+              ..++              |+.+.+.+||..+|+|++|+||||++++|++..
T Consensus       133 ri~Fe~ltp~yP~er--------------~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHANSR--------------LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCCSB--------------CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCc--------------cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            477889999997642              3566              899999999999999999999999999999876


Q ss_pred             c
Q 010435          472 P  472 (510)
Q Consensus       472 ~  472 (510)
                      .
T Consensus       199 ~  199 (422)
T 3ice_A          199 A  199 (422)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.97  E-value=0.00054  Score=61.54  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccC------------CcceEEEcCee
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV------------TGGDALIYGFS  484 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p------------t~G~i~i~g~~  484 (510)
                      ++|..++|+|++|+||||+++.|+|...+            ..+.+.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   53 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP   53 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence            35778999999999999999999986421            13667777754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.94  E-value=0.00027  Score=71.75  Aligned_cols=42  Identities=21%  Similarity=0.518  Sum_probs=33.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC--CccCCcceEE
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDAL  479 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G--~~~pt~G~i~  479 (510)
                      .++++++++++   .++++|++||||||+++.|+|  ++++.+|.+.
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            58999999998   889999999999999999999  6677777664

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.91  E-value=0.00011  Score=78.07  Aligned_cols=48  Identities=23%  Similarity=0.255  Sum_probs=42.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      .+++++++.+++|  +.|.||||+||||+++.|+|...  .|.+.++|.++.
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~  101 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV  101 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence            3678888999998  88999999999999999999875  789999998763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.90  E-value=0.00019  Score=72.77  Aligned_cols=65  Identities=22%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             eeeeeeE--EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCeecCCcccHHHhhccEEEEccC
Q 010435          436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQV  504 (510)
Q Consensus       436 av~~lsl--~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~~i~~~~~~~~~r~~iG~cpQ~  504 (510)
                      .||.+-=  .+++|+++.|.||+|+||||++..+++...+..|.+ ++++....+   . ...+++|+.+|.
T Consensus        48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~-~ra~rlgv~~~~  115 (356)
T 3hr8_A           48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---P-VYAKNLGVDLKS  115 (356)
T ss_dssp             HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---H-HHHHHHTCCGGG
T ss_pred             HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---h-HHHHHcCCchhh
Confidence            4555433  589999999999999999999999999888877865 787765421   1 133456666553

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.82  E-value=0.00031  Score=63.99  Aligned_cols=42  Identities=29%  Similarity=0.305  Sum_probs=34.6

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCee
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFS  484 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~~  484 (510)
                      ...+|.++.|.|++||||||+.+.|++.+.+..|.+ .+++..
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~   51 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW   51 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence            345789999999999999999999999988777776 455543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.78  E-value=0.00052  Score=70.45  Aligned_cols=41  Identities=15%  Similarity=0.128  Sum_probs=32.9

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCC-----------ccCCcceEEEcCe
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGI-----------TPVTGGDALIYGF  483 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~-----------~~pt~G~i~i~g~  483 (510)
                      .+..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            3456778999999999999999999998           6777888887653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.77  E-value=0.00016  Score=73.62  Aligned_cols=51  Identities=22%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      -+.+++|.+.|+++               .+.++.+|+|      +++|++|+||||+++.|.|......|.
T Consensus        17 ~v~~~~l~~~~~~k---------------~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           17 YVGFANLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             ----CCHHHHHHTH---------------HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             eEEeccchHHhCCe---------------eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            47778888777432               4788888887      999999999999999998875554443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.75  E-value=0.00083  Score=60.62  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=27.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc-----------cCCcceEEEcCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT-----------PVTGGDALIYGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~-----------~pt~G~i~i~g~~  484 (510)
                      .++++|++|+||||+++.|+|..           .+..|.+.++|..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~   55 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK   55 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence            57899999999999999999942           2334666666644

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.70  E-value=0.0013  Score=58.24  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|++|+||||+++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999954

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.65  E-value=0.00091  Score=67.34  Aligned_cols=29  Identities=21%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l  467 (510)
                      ++..++..+ .+++|+|||||||||++..|
T Consensus        15 ~~~~i~f~~-~~~~i~G~NGsGKS~lleAi   43 (339)
T 3qkt_A           15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAI   43 (339)
T ss_dssp             EEEEEECCS-EEEEEECCTTSSHHHHHHHH
T ss_pred             cCeEEcCCC-CeEEEECCCCCCHHHHHHHH
Confidence            344555544 58999999999999999976

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.62  E-value=0.001  Score=61.94  Aligned_cols=29  Identities=21%  Similarity=0.459  Sum_probs=22.8

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      +.++++.+ .+++|.|+|||||||++..|.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            33445444 599999999999999999774

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.56  E-value=0.00071  Score=66.98  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++..++|+|++|+|||||++.|+|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            445589999999999999999999963

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.55  E-value=0.001  Score=60.63  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=26.1

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++|+...+|.+++|.|+.||||||+.+.|...
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57788889999999999999999999999764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.53  E-value=0.0004  Score=64.12  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=28.9

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      ..+++|.|++||||||+.+.|++.+    |...+++.++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            3578999999999999999998865    5667776555

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.51  E-value=0.00061  Score=67.17  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=26.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      +++++||.|++||||||+.+.|.+++.+.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            56799999999999999999999999864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.41  E-value=0.001  Score=69.06  Aligned_cols=41  Identities=24%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++.+++++|+||+|||||+..|++.+.+..+++.+-+.|+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            56899999999999999999999999999999998777764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.33  E-value=0.0014  Score=60.64  Aligned_cols=29  Identities=31%  Similarity=0.463  Sum_probs=25.8

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      +.+|.+++|.|++||||||+.+.|...++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            46788999999999999999999987664

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.32  E-value=0.0013  Score=60.71  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      +++|.|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.24  E-value=0.0016  Score=59.14  Aligned_cols=37  Identities=22%  Similarity=0.126  Sum_probs=29.5

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCee
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFS  484 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~  484 (510)
                      .++++.|++||||||+++.|.+.+++.   -|.+..++++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            588999999999999999999987654   3677776644

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.19  E-value=0.00081  Score=64.04  Aligned_cols=58  Identities=16%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             CCcEEEEecCCCCchhHHHHHHc---CCccCCcceEE--------EcCeecCCcccHHHhhccEEEEcc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ  503 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~--------i~g~~i~~~~~~~~~r~~iG~cpQ  503 (510)
                      +.-+++|.||+||||||+.+.|+   |....+.|.++        -.|.+..+.....+..+.+.+.++
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~   76 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVG   76 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEe
Confidence            34589999999999999999998   66666667663        345555332234455555566553

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.15  E-value=0.0012  Score=59.79  Aligned_cols=24  Identities=46%  Similarity=0.583  Sum_probs=21.7

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .+|.+++|.|++||||||+.+.|+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999999998

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.14  E-value=0.00046  Score=69.61  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=34.1

Q ss_pred             ceeeeeeEEEeCCcE--EEEecCCCCchhHHHHHHcCCcc
Q 010435          435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       435 ~av~~lsl~v~~gei--~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            478889999999998  99999999999999999998653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.07  E-value=0.0014  Score=62.10  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcC---CccCCcceEE
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTG---ITPVTGGDAL  479 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G---~~~pt~G~i~  479 (510)
                      -.+|.+++|.|++||||||+.++|++   ...++.|.+.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~   51 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY   51 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence            45678999999999999999999985   4345555443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.07  E-value=0.0028  Score=57.22  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|++|+||||+++.++|..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999999963

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.98  E-value=0.0039  Score=59.00  Aligned_cols=28  Identities=32%  Similarity=0.498  Sum_probs=23.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      .++|+|++|+|||||++.|+|...+.+|
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            4689999999999999999997766554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.96  E-value=0.0023  Score=61.44  Aligned_cols=40  Identities=30%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++.++.|.|++||||||+.+.|...+.  .|.+.++|..+
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            34567899999999999999999998764  35678888665

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.88  E-value=0.0031  Score=66.84  Aligned_cols=48  Identities=13%  Similarity=0.190  Sum_probs=40.9

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHcC--CccCCcceEEEcCeecC
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIR  486 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G--~~~pt~G~i~i~g~~i~  486 (510)
                      .+++++.++..+.+.|.+||||||+++.|..  +..++.|++.+.+.|.+
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            4678889999999999999999999998876  66777888888777753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.77  E-value=0.0053  Score=62.27  Aligned_cols=35  Identities=20%  Similarity=0.175  Sum_probs=29.5

Q ss_pred             cEEEEecCCCCchhHHHHHHcC-----------CccCCcceEEEcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG-----------ITPVTGGDALIYG  482 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G-----------~~~pt~G~i~i~g  482 (510)
                      ..++|+|.+|+|||||++.|+|           ...|+.|.+.+.+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            4679999999999999999998           4467778887765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.76  E-value=0.0055  Score=55.14  Aligned_cols=36  Identities=36%  Similarity=0.432  Sum_probs=28.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc----cCCcc----eEEEcCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~----~pt~G----~i~i~g~~  484 (510)
                      .++++|++|+||||+++.+++..    .||.|    ++.+++..
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~   61 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK   61 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence            47899999999999999999873    66777    55555543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.64  E-value=0.0065  Score=61.80  Aligned_cols=32  Identities=19%  Similarity=0.429  Sum_probs=26.2

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      ..++..++..+ .++.|.|+|||||||++..|.
T Consensus        15 ~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           15 SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            34666777655 589999999999999999875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.59  E-value=0.0045  Score=59.21  Aligned_cols=44  Identities=30%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      +++++..++|  +.|.||+|+||||+.+.|++....  --+.+++.++
T Consensus        38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~--~~~~i~~~~~   81 (257)
T 1lv7_A           38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDF   81 (257)
T ss_dssp             -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSS
T ss_pred             HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC--CEEEEeHHHH
Confidence            3333444444  779999999999999999997643  2477777665

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.51  E-value=0.0045  Score=63.33  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      .+..+.++|++||||||+++.|.+...+..+.+.+-
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~   69 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII   69 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence            566788999999999999999999888888888874

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.47  E-value=0.005  Score=62.23  Aligned_cols=48  Identities=21%  Similarity=0.298  Sum_probs=35.1

Q ss_pred             eeeeeeE--EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce-EEEcCe
Q 010435          436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYGF  483 (510)
Q Consensus       436 av~~lsl--~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~-i~i~g~  483 (510)
                      .+|.+-=  .+++|+++.|.|++|+||||+...++.......|. ++++..
T Consensus        48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            4555432  68899999999999999999988777655444444 566654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.46  E-value=0.012  Score=53.03  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=27.6

Q ss_pred             EEEEecCCCCchhHHHHHH-cCC----ccCCcc----eEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCL-TGI----TPVTGG----DALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l-~G~----~~pt~G----~i~i~g~~i  485 (510)
                      .++++|..|+||||+++.+ .|.    ..||.|    .+.++|..+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   67 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY   67 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence            3679999999999999655 444    567767    667777543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.42  E-value=0.0081  Score=67.41  Aligned_cols=30  Identities=30%  Similarity=0.612  Sum_probs=28.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~  464 (510)
                      +=|+||+++|++|+.+++.|.+|||||||.
T Consensus        24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            359999999999999999999999999997

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.39  E-value=0.0064  Score=58.86  Aligned_cols=24  Identities=38%  Similarity=0.591  Sum_probs=21.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .++|+|++|+||||+++.|+|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999999754

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.39  E-value=0.0019  Score=67.63  Aligned_cols=51  Identities=10%  Similarity=0.197  Sum_probs=43.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeec
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSI  485 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i  485 (510)
                      ..||++...+++|+++.|.|++|+||||++..+++...+..| .+.+.+.+.
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            579999989999999999999999999999999998877555 666655444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.09  E-value=0.01  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++|.|+.||||||+.+.|...+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            67899999999999999998653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.98  E-value=0.011  Score=57.79  Aligned_cols=36  Identities=31%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +|.++.|.|++||||||+.+.|...++  .|.+.|++.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D   67 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDND   67 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEech
Confidence            346788999999999999999976543  367778763

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.97  E-value=0.01  Score=53.72  Aligned_cols=26  Identities=27%  Similarity=0.265  Sum_probs=22.6

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++.++.|.|+.||||||+.+.|...
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.92  E-value=0.0041  Score=57.42  Aligned_cols=26  Identities=35%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      +++|.|++||||||+++.|...+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            67899999999999999998876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=94.88  E-value=0.0064  Score=59.90  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+.++..+.|.||+|+||||+.+.+++...  .+-+.+++.++
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l   85 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL   85 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH
Confidence            456778899999999999999999999764  56777776543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.86  E-value=0.013  Score=54.34  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++-+++|.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999986

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.85  E-value=0.011  Score=53.88  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=26.2

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .+++|.|+.||||||+.+.|+..     |-..++..+
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~   40 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA   40 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence            57899999999999999999875     666665543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.83  E-value=0.014  Score=52.57  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      |.++.|.|+.||||||+.+.|.-.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999997643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=94.79  E-value=0.015  Score=65.79  Aligned_cols=30  Identities=33%  Similarity=0.590  Sum_probs=28.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~  464 (510)
                      +=|+|||++|++++.+++.|.+|||||||.
T Consensus        32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            459999999999999999999999999985

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.77  E-value=0.016  Score=51.83  Aligned_cols=25  Identities=28%  Similarity=0.589  Sum_probs=22.2

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      |.++.|.|++||||||+.+.|...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5688999999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.75  E-value=0.015  Score=51.34  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=18.1

Q ss_pred             EEEEecCCCCchhHHHHHH
Q 010435          449 LFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l  467 (510)
                      +++|.|+.||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999999999

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.70  E-value=0.012  Score=59.29  Aligned_cols=42  Identities=21%  Similarity=0.100  Sum_probs=34.0

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCC--ccC-----CcceEEEcCee
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGI--TPV-----TGGDALIYGFS  484 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~--~~p-----t~G~i~i~g~~  484 (510)
                      .+++|+++.|.|++|+||||+...++..  .++     ..+.++++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            6899999999999999999999988874  332     34567887765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.58  E-value=0.017  Score=52.71  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=23.6

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +|-+++|.|+.||||||+.+.|...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=94.54  E-value=0.014  Score=66.17  Aligned_cols=30  Identities=33%  Similarity=0.623  Sum_probs=28.5

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~  464 (510)
                      +=|+|||++|++++++++.|++|||||||.
T Consensus        12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           12 HNLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             cccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            469999999999999999999999999986

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.47  E-value=0.013  Score=52.82  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=23.0

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      .++++.|++||||||++..|.+.+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            37899999999999999999987764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.46  E-value=0.029  Score=48.95  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999999873

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=94.44  E-value=0.013  Score=55.27  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=22.7

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+.+|+.+.+.|++||||||++..+..
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            346899999999999999998876643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.40  E-value=0.019  Score=55.81  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|++|+||||+++.|+|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            57899999999999999999953

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.40  E-value=0.018  Score=52.69  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=18.4

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.|.||+||||||+++.|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            579999999999999998643

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.35  E-value=0.031  Score=55.40  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ..+++..+++ .|+-+.|.|++|+||||+...|.+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            5788888888 889999999999999999988876

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.32  E-value=0.0064  Score=63.51  Aligned_cols=46  Identities=24%  Similarity=0.279  Sum_probs=37.1

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      +++|.+ ..+-+||..+|.|++|+|||||++.|.+......|.+.+.
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~  185 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVF  185 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEE
Confidence            467777 7788999999999999999999999988766545555543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.30  E-value=0.015  Score=57.84  Aligned_cols=42  Identities=21%  Similarity=0.181  Sum_probs=33.8

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCc-cC------CcceEEEcCee
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT-PV------TGGDALIYGFS  484 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~-~p------t~G~i~i~g~~  484 (510)
                      .+++|+++.|.|++|+||||+...++... .|      ..+.++++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            68999999999999999999998887643 33      34567887654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.28  E-value=0.021  Score=52.02  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      +++|.|+.||||||+.+.|+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            578999999999999999988

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.28  E-value=0.023  Score=51.13  Aligned_cols=24  Identities=38%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.++.|.|+.||||||+.+.|+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999999753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.24  E-value=0.02  Score=51.36  Aligned_cols=24  Identities=33%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .++.++.|.|+.||||||+.+.|.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            356788999999999999999998

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.14  E-value=0.022  Score=54.57  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++.|.|++||||||+.+.|++.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            67899999999999999998643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.13  E-value=0.018  Score=56.33  Aligned_cols=36  Identities=31%  Similarity=0.272  Sum_probs=29.7

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCe
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGF  483 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~  483 (510)
                      ..+.|.||+|+||||+.+.|++...++.|.+ .++..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~   84 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   84 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence            5788999999999999999999988877754 44433

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.10  E-value=0.025  Score=57.09  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.9

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      -.++++|++|+||||+++.|+|..
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999975

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.06  E-value=0.024  Score=52.04  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++|.+++|.|+.||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.06  E-value=0.026  Score=51.62  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.1

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      +|.+++|.|+.||||||+.+.|...+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999876544

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.06  E-value=0.023  Score=51.41  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=22.7

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++.+++|.|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.04  E-value=0.021  Score=51.05  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++.|.|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            57899999999999999998654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.02  E-value=0.027  Score=49.14  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=19.9

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+.|+||||+++.+.+-.
T Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            6899999999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.01  E-value=0.026  Score=51.90  Aligned_cols=26  Identities=31%  Similarity=0.360  Sum_probs=22.9

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++|-+++|.|+.||||||+.+.|..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999999984

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.99  E-value=0.025  Score=49.35  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=19.6

Q ss_pred             EEEecCCCCchhHHHHHHcCCcc
Q 010435          450 FCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++++|+.|+||||+++.++|...
T Consensus         5 i~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEECCCCCCHHHHHHHHcCccc
Confidence            68999999999999999998543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.98  E-value=0.031  Score=53.68  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|..|+||||+++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999974

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.96  E-value=0.028  Score=50.66  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             CcEEEEecCCCCchhHHHHHHcC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.+++|.|+.||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999998864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.95  E-value=0.027  Score=50.12  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++.|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3678999999999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=93.83  E-value=0.023  Score=57.70  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=19.7

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++|+|++|+||||+++.|+|.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999985

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.024  Score=51.01  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|++..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.80  E-value=0.035  Score=50.50  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|..|+||||+++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4689999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.79  E-value=0.022  Score=50.68  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|++|+||||+++.+++
T Consensus        20 ~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999985

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.74  E-value=0.03  Score=49.17  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.++|..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            36899999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.70  E-value=0.026  Score=50.46  Aligned_cols=24  Identities=33%  Similarity=0.546  Sum_probs=17.0

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++.++.|.|+.||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999974

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.66  E-value=0.032  Score=49.21  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|++-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.64  E-value=0.038  Score=48.75  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.55  E-value=0.04  Score=48.57  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             cEEEEecCCCCchhHHHHHHcCC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      -.++++|+.|+||||+++.+++-
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999873

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.53  E-value=0.03  Score=50.35  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|+|-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998863

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.48  E-value=0.036  Score=48.43  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=19.2

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+.|+||||+++.++|..
T Consensus         5 i~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHhcc
Confidence            6799999999999999998643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.48  E-value=0.033  Score=53.12  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|+.|+|||||++.|+|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.43  E-value=0.032  Score=49.95  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.++|-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            47899999999999999998864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.42  E-value=0.039  Score=48.81  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      |+++|.|..||||||..+.|+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999975

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.40  E-value=0.025  Score=51.26  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=23.1

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++.+++|.|+.||||||+.+.|+..+
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999997543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.39  E-value=0.037  Score=55.67  Aligned_cols=36  Identities=33%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCC--cceEEEcCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt--~G~i~i~g~~  484 (510)
                      ++.|.||+|+||||+++.+.+...+.  ..-++++..+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~   83 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI   83 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence            78899999999999999999988775  3566777543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.37  E-value=0.028  Score=48.62  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.37  E-value=0.041  Score=49.51  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.|++-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3689999999999999999873

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.32  E-value=0.058  Score=47.80  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=22.5

Q ss_pred             EEEEecCCCCchhHHHHHHcC-----CccCCcce
Q 010435          449 LFCLLGPNGAGKTTTISCLTG-----ITPVTGGD  477 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G-----~~~pt~G~  477 (510)
                      .++++|+.|+||||+++.+++     .+.||.|.
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~   41 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN   41 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence            468999999999999999983     33555554

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.32  E-value=0.039  Score=48.01  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3689999999999999999764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.31  E-value=0.043  Score=50.94  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=21.7

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +|-.+.|.|+.||||||+.+.|+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.28  E-value=0.022  Score=57.14  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCC----cceEEEcCe
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALIYGF  483 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt----~G~i~i~g~  483 (510)
                      .+++.+.|.|++|+||||+++.+.+...+.    ...+++++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~   85 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR   85 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence            345788999999999999999999987653    346677643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.28  E-value=0.031  Score=48.40  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999998753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.26  E-value=0.041  Score=50.24  Aligned_cols=22  Identities=18%  Similarity=0.449  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++|.|++||||||+.+.|++.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999999774

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.26  E-value=0.045  Score=48.81  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+.|+||||+++.++|-.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6799999999999999998854

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.24  E-value=0.04  Score=49.47  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|+.|+||||+++.|+|-
T Consensus        10 i~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A           10 TVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999875

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.24  E-value=0.032  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.22  E-value=0.033  Score=48.35  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.20  E-value=0.041  Score=51.43  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=20.9

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++..+.|.|+.||||||+.+.|+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456889999999999999999974

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=93.20  E-value=0.042  Score=54.14  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=20.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++|+|++|+|||||++.|+|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999985

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.15  E-value=0.041  Score=49.45  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++.|.|+.||||||+.+.|...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.14  E-value=0.036  Score=49.72  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      .++++|+.|+||||+++.+.|....
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            3589999999999999999987653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.12  E-value=0.062  Score=49.22  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=18.5

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+++
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            368999999999999998865

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=93.11  E-value=0.038  Score=53.38  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|+.|+||||+++.|.|.
T Consensus        11 I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           11 LMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999998774

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.11  E-value=0.05  Score=48.62  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|+.|+||||+++.+++-
T Consensus        10 i~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            589999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.01  E-value=0.036  Score=48.94  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            46899999999999999887643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=92.99  E-value=0.047  Score=52.41  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|+.|+||||+++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999954

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.98  E-value=0.037  Score=48.34  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3689999999999999999854

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.97  E-value=0.035  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+.|+||||+++.+.+-.
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            6899999999999999998643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.95  E-value=0.048  Score=47.37  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999999975

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.94  E-value=0.048  Score=47.42  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+.|+||||+++.+.+-.
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999987543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.92  E-value=0.038  Score=48.70  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.0

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|+.|+||||+++.+.+-
T Consensus        10 i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=92.88  E-value=0.046  Score=52.94  Aligned_cols=23  Identities=39%  Similarity=0.507  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|+.|+||||+++.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.86  E-value=0.04  Score=47.98  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=18.6

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|+.|+||||+++.+++
T Consensus         9 i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999999985

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=92.86  E-value=0.05  Score=50.17  Aligned_cols=20  Identities=35%  Similarity=0.461  Sum_probs=18.1

Q ss_pred             EEEEecCCCCchhHHHHHHc
Q 010435          449 LFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~  468 (510)
                      .++|.|+.||||||+.+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999995

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=92.85  E-value=0.019  Score=60.32  Aligned_cols=45  Identities=27%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .++++++.+++|  +.|.||+|+||||+.+.+++....  --+.+++.+
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~   84 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSD   84 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHH
Confidence            456666667777  679999999999999999986532  234455444

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=92.84  E-value=0.066  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4679999999999999999983

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=92.81  E-value=0.054  Score=51.95  Aligned_cols=25  Identities=36%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++.++.|.|+.||||||+.+.|...
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=92.74  E-value=0.052  Score=49.51  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      ..+.|.|++|+||||+++.+........+.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            5678999999999999999998776544443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.74  E-value=0.067  Score=48.42  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=18.9

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|+.|+||||+++.+.+-
T Consensus        17 i~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           17 VIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.73  E-value=0.042  Score=48.94  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.|++-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=92.70  E-value=0.057  Score=52.07  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=22.8

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      ..++++|.+|+||||+++.|+|......|
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~  128 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG  128 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence            47899999999999999999997654333

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.69  E-value=0.056  Score=48.20  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998743

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.67  E-value=0.062  Score=49.04  Aligned_cols=24  Identities=42%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +-+++|.|+.||||||+.+.|...
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=92.65  E-value=0.057  Score=49.25  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             CcEEEEecCCCCchhHHHHHHcC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ..+++|.|+.||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.62  E-value=0.044  Score=48.89  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999863

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.60  E-value=0.051  Score=47.89  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=19.7

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+.|+||||+++.+++-.
T Consensus         9 i~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            9 IVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEECcCCCCHHHHHHHHHhCc
Confidence            6899999999999999998753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=92.58  E-value=0.057  Score=56.04  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      ++.++.++|++|+|||||..-|+..+....-++.+-..|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4578999999999999999999987766545665543343

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.57  E-value=0.054  Score=51.94  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|+|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=92.56  E-value=0.06  Score=48.42  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++|.|+.||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999997543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=92.56  E-value=0.038  Score=51.01  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|+|-.
T Consensus        31 ~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCS
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            56899999999999999999874

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.55  E-value=0.046  Score=47.74  Aligned_cols=21  Identities=43%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+.+
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999965

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.52  E-value=0.047  Score=47.40  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=18.4

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|+.|+||||+++.+++
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            67999999999999999975

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=92.50  E-value=0.06  Score=49.70  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=18.5

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++|.|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999953

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.50  E-value=0.047  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3689999999999999999763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=92.46  E-value=0.061  Score=48.25  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+++|.|+.||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999974

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=92.42  E-value=0.052  Score=48.71  Aligned_cols=23  Identities=35%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.++|..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.41  E-value=0.049  Score=47.90  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999998643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=92.37  E-value=0.065  Score=48.34  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=18.9

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+.|+||||+++.|++..
T Consensus        29 i~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999999754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.36  E-value=0.053  Score=50.39  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             CcEEEEecCCCCchhHHHHHHcC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      +..+.|.|+.||||||+.+.|+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999974

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.34  E-value=0.05  Score=48.71  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|..|+||||+++.|++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3679999999999999999764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.34  E-value=0.079  Score=47.68  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            36799999999999999998743

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=92.33  E-value=0.068  Score=47.02  Aligned_cols=22  Identities=32%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++|.|+.||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999763

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=92.23  E-value=0.057  Score=47.69  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++|.|+.||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.23  E-value=0.053  Score=48.05  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3689999999999999999853

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.22  E-value=0.063  Score=47.16  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999999753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=92.21  E-value=0.046  Score=53.54  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +-++||.|+.||||||+.+.|...+
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998744

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.21  E-value=0.052  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            46899999999999999998653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.20  E-value=0.052  Score=50.08  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|++..
T Consensus        32 ~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            67899999999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.18  E-value=0.068  Score=48.45  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.15  E-value=0.058  Score=49.59  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|++..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.13  E-value=0.059  Score=48.32  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+++|.|+.||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.02  E-value=0.058  Score=47.66  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3689999999999999999865

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.98  E-value=0.068  Score=50.41  Aligned_cols=29  Identities=28%  Similarity=0.464  Sum_probs=21.7

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      +.+|-.+.+.|+.||||||..+.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999986654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.98  E-value=0.075  Score=47.14  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|+.|+||||+++.+++-
T Consensus        21 i~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           21 LVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            579999999999999998853

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=91.97  E-value=0.073  Score=48.19  Aligned_cols=24  Identities=17%  Similarity=0.211  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .++++|..|+||||+++.+.|-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            467999999999999999999543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.97  E-value=0.059  Score=47.76  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.6

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+++
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999988874

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.96  E-value=0.054  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+++
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            478999999999999999986

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.96  E-value=0.07  Score=48.55  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3689999999999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=91.95  E-value=0.064  Score=52.59  Aligned_cols=23  Identities=17%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.||||||+++.|+|.-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999975

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.95  E-value=0.075  Score=47.64  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            36899999999999999998743

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.94  E-value=0.086  Score=48.37  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.94  E-value=0.07  Score=47.41  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=19.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999999754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.94  E-value=0.07  Score=47.70  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+++
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999985

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=91.91  E-value=0.077  Score=52.30  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+|||||++.|+|.-
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999999853

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=91.91  E-value=0.14  Score=47.21  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=28.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ..+++..+.+ .|..+.|.|++|+||||+..-|..-
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4667766665 5788999999999999999888753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.91  E-value=0.061  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999998643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=91.91  E-value=0.08  Score=48.51  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             cEEEEecCCCCchhHHHHHHcCC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      -++||.|..||||||..++|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            37899999999999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=91.88  E-value=0.087  Score=48.83  Aligned_cols=28  Identities=25%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      ++..+.|.||+|+||||+++.+......
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4578889999999999999999876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.85  E-value=0.086  Score=49.07  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.++|-.
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999853

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=91.78  E-value=0.085  Score=50.04  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             CcEEEEecCCCCchhHHHHHHcC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      +-+++|.|+.||||||+.+.|..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999974

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=91.72  E-value=0.083  Score=49.29  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.5

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+.|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999863

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.72  E-value=0.11  Score=46.74  Aligned_cols=29  Identities=24%  Similarity=0.239  Sum_probs=22.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC-----ccCCcce
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI-----TPVTGGD  477 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~-----~~pt~G~  477 (510)
                      .++++|..|+||||+++.+++-     +.||-|.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~   56 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED   56 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence            3689999999999999888653     3556554

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.69  E-value=0.093  Score=48.89  Aligned_cols=29  Identities=31%  Similarity=0.392  Sum_probs=24.3

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      .+|..+.+.|+.||||||..+.|...+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            36789999999999999999999765543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.68  E-value=0.061  Score=48.49  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=19.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3689999999999999999753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.66  E-value=0.069  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3579999999999999999874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=91.64  E-value=0.085  Score=48.44  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|+|-.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999998643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.63  E-value=0.068  Score=48.06  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3679999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.59  E-value=0.063  Score=48.76  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            46799999999999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=91.57  E-value=0.084  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+|||||++.|+|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=91.56  E-value=0.088  Score=50.09  Aligned_cols=23  Identities=17%  Similarity=0.318  Sum_probs=20.4

Q ss_pred             cEEEEecCCCCchhHHHHHHcCC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      -+++|.|+.||||||+.+.|...
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.54  E-value=0.07  Score=48.35  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++|+|.+|+||||+++.++|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999986

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=91.49  E-value=0.041  Score=57.12  Aligned_cols=38  Identities=26%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+++++|++|+|||||...|++.+.....++.+-..|.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            58899999999999999999998775545666554443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.46  E-value=0.066  Score=48.70  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.|++-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.45  E-value=0.092  Score=47.46  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.44  E-value=0.072  Score=47.72  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+.+
T Consensus        22 ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999999974

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.43  E-value=0.068  Score=48.07  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            36799999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.42  E-value=0.073  Score=47.75  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+++
T Consensus        24 ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999999985

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.37  E-value=0.088  Score=46.49  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999999854

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=91.37  E-value=0.093  Score=48.12  Aligned_cols=23  Identities=35%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|++-.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            36899999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.35  E-value=0.075  Score=47.53  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4689999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.31  E-value=0.075  Score=47.96  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.31  E-value=0.076  Score=48.12  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            46899999999999999997643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.31  E-value=0.088  Score=48.45  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3689999999999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.17  E-value=0.067  Score=47.48  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=8.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36899999999999999998754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.17  E-value=0.096  Score=47.29  Aligned_cols=22  Identities=32%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=91.16  E-value=0.086  Score=49.33  Aligned_cols=25  Identities=36%  Similarity=0.493  Sum_probs=21.2

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++..++.|+||.||||+|..+.|+-
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446888999999999999998874

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=91.11  E-value=0.1  Score=48.42  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      |-.+.|.|+.||||||..+.|+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=91.09  E-value=0.094  Score=47.86  Aligned_cols=30  Identities=23%  Similarity=0.113  Sum_probs=21.9

Q ss_pred             EEEEecCCCCchhHHHHHHcC-----CccCCcceE
Q 010435          449 LFCLLGPNGAGKTTTISCLTG-----ITPVTGGDA  478 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G-----~~~pt~G~i  478 (510)
                      .++++|+.|+||||+++.+++     ...|+.|..
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~   66 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN   66 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce
Confidence            467999999999999977663     445555543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=91.07  E-value=0.11  Score=49.26  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=24.2

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      +|..+.+.|+.||||||..+.|...+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999998776543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.06  E-value=0.11  Score=47.40  Aligned_cols=22  Identities=23%  Similarity=0.146  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999854

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=91.03  E-value=0.13  Score=51.37  Aligned_cols=27  Identities=33%  Similarity=0.570  Sum_probs=23.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++.++.|+||+|+||||+...|+.-+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            456899999999999999999998663

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=91.02  E-value=0.1  Score=48.17  Aligned_cols=21  Identities=33%  Similarity=0.351  Sum_probs=18.4

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++|.|+.||||||..+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.01  E-value=0.084  Score=48.09  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999999854

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=90.97  E-value=0.099  Score=50.79  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             cEEEEecCCCCchhHHHHHHc
Q 010435          448 QLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~  468 (510)
                      -+++|.|+.||||||+.+.|.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999997

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=90.94  E-value=0.067  Score=47.21  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|..|+||||+++.+++-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999998864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=90.90  E-value=0.095  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|..|+||||+++.|+|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999965

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=90.87  E-value=0.16  Score=45.82  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=25.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ..++...+.+ .|.-+.|.|++|+||||+...|..
T Consensus         5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3555555554 578889999999999999876653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=90.87  E-value=0.1  Score=50.69  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++..+.|.||+|+||||+.+.+++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            34577899999999999999999865

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=90.82  E-value=0.12  Score=48.13  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.2

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      +|..+.+-|+.||||||.++.|...+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4778999999999999999999876643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.79  E-value=0.084  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.+++-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998743

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=90.77  E-value=0.066  Score=59.79  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=26.9

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~  475 (510)
                      +..|+.+.+.|||||||||++.++.+...+..
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~  137 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH  137 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            56789999999999999999999877655544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=90.70  E-value=0.13  Score=48.15  Aligned_cols=26  Identities=42%  Similarity=0.438  Sum_probs=21.6

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++..+.|.|+.||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578899999999999999997543

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=90.70  E-value=0.12  Score=48.22  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=25.8

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      .+|..+.+.|+.||||||..+.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46889999999999999999999887765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=90.66  E-value=0.092  Score=46.95  Aligned_cols=22  Identities=32%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+.+-
T Consensus        24 ~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=90.33  E-value=0.065  Score=48.51  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=3.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999988876

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=90.31  E-value=0.13  Score=47.60  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++|+|..|+||||+++.++|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.28  E-value=0.12  Score=47.60  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.+++|.|+.||||||+.+.|+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=90.27  E-value=0.12  Score=54.00  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++|+|.+|+|||||++.|+|-
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6889999999999999999984

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=90.18  E-value=0.12  Score=51.91  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      -+++|+|+.|+||||+++.|++.+.
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999987653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.17  E-value=0.13  Score=46.65  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999874

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.16  E-value=0.1  Score=46.83  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999999854

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=90.05  E-value=0.081  Score=52.20  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=26.0

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcce-EEEcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYG  482 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~-i~i~g  482 (510)
                      ..+.|.||+|+||||+++.+.+........ ++++.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~   73 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   73 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence            456799999999999999999877554332 34443

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=90.00  E-value=0.17  Score=47.58  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=24.0

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .+|..+.+-|+.||||||..+.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3577899999999999999999987554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=89.96  E-value=0.14  Score=47.24  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++-+++-.
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57899999999999999888654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=89.86  E-value=0.15  Score=49.57  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++.|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999975

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.84  E-value=0.19  Score=46.24  Aligned_cols=30  Identities=23%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCC-----ccCCcceE
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI-----TPVTGGDA  478 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~-----~~pt~G~i  478 (510)
                      .++++|..|+||||+++.+++-     +.||-|.-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~   63 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN   63 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee
Confidence            3679999999999999998764     34555543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.80  E-value=0.17  Score=50.04  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.+++|.||+|+||||+...|+--+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=89.68  E-value=0.15  Score=46.11  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             CCcEEEEecCCCCchhHHH-HHH
Q 010435          446 KDQLFCLLGPNGAGKTTTI-SCL  467 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~-~~l  467 (510)
                      +|++..+.|+.|+||||++ +++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999997 555

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=89.67  E-value=0.16  Score=50.80  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .+++|.||+||||||+.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3789999999999999999887654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=89.63  E-value=0.19  Score=44.43  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +..+.|.|+.|+||||+++.+....
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3567799999999999999888765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=89.61  E-value=0.2  Score=48.72  Aligned_cols=24  Identities=25%  Similarity=0.247  Sum_probs=21.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .++++|.+|+||||++|.|+|...
T Consensus       122 ~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          122 RALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             eEEEEecCCCchHHHHHHHhcCce
Confidence            578999999999999999998653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=89.60  E-value=0.071  Score=53.42  Aligned_cols=50  Identities=10%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..||.+.-.+++|+.+.|.|++|+||||+..-++.......+.+.+-..+
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            57888877899999999999999999999888877655445566554333

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=89.56  E-value=0.18  Score=51.98  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=26.9

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .+.+++.|.|++||||||+.+.|...+    |-..++..+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~  291 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDT  291 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccch
Confidence            345789999999999999999987543    445554433

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.54  E-value=0.13  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3689999999999999999864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=89.53  E-value=0.15  Score=51.50  Aligned_cols=50  Identities=16%  Similarity=0.129  Sum_probs=35.9

Q ss_pred             ceeeeee--EEEeCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEEEcCee
Q 010435          435 HAIKGLW--VNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGFS  484 (510)
Q Consensus       435 ~av~~ls--l~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~i~g~~  484 (510)
                      ..||.+-  =.+++|+++.|.|++|+||||+...++..... ...-++++...
T Consensus        49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3566652  14899999999999999999998777754432 23456777643

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.53  E-value=0.12  Score=46.94  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++|+.|+||||+++.+++-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            3689999999999999999754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=89.50  E-value=0.17  Score=47.56  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +|..+++-|..||||||+.+.|...+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            35678999999999999999998554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=89.43  E-value=0.15  Score=48.68  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=23.3

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++-.++|.|..||||||+.+.|...+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            466789999999999999999998765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=89.32  E-value=0.19  Score=46.56  Aligned_cols=21  Identities=43%  Similarity=0.713  Sum_probs=18.1

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++.|+||.||||+|..+.|+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999988863

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=89.18  E-value=0.17  Score=46.09  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=18.9

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+++
T Consensus        11 ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            368999999999999999975

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=89.13  E-value=0.21  Score=49.31  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=27.4

Q ss_pred             eeeeee-EEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       436 av~~ls-l~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+|.+- =.+++|+++.|.|++|+||||+...++.
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            444442 2689999999999999999999987764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=89.08  E-value=0.077  Score=48.09  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+||||+++.|++..
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=89.03  E-value=0.18  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++|+|..++||||+++.|+|--
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=88.97  E-value=0.11  Score=51.42  Aligned_cols=36  Identities=8%  Similarity=0.033  Sum_probs=31.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ..||++.-.+++|+++.|.|++|+||||+...++..
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            578888878999999999999999999998777643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=88.93  E-value=0.19  Score=51.35  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+|||||++.|+|..
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            47899999999999999999954

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=88.79  E-value=0.23  Score=49.69  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=27.0

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.+.++++.---++|+|..+||||||++.|++-
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            556666665556899999999999999999975

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=88.79  E-value=0.2  Score=49.71  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.2

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++.|.||+|+||||+.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            378899999999999999998755

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=88.78  E-value=0.17  Score=48.71  Aligned_cols=28  Identities=29%  Similarity=0.352  Sum_probs=23.5

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .++..+.|.||.|+||||+.+.++....
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4455688999999999999999988653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.67  E-value=0.064  Score=53.24  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=27.5

Q ss_pred             eeeeeeEEEeCC--cEEEEecCCCCchhHHHHHHcCCcc
Q 010435          436 AIKGLWVNIAKD--QLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       436 av~~lsl~v~~g--ei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      +++.+.-.+..|  ..+.|.||+|+||||+.+.+++.+.
T Consensus        45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            444444444455  3488999999999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=88.27  E-value=0.26  Score=45.20  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .+.|.|+.|+||||+++.+.....
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            678999999999999999976553

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=87.97  E-value=0.27  Score=48.48  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++.|.||+|+||||+...|+..+
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            478899999999999999998654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=87.77  E-value=0.28  Score=46.31  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ...+.|.||.|+||||+.+.++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3456799999999999999998754

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=87.75  E-value=0.5  Score=46.55  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      ..+++.-+++ .|.-+.|.|++|+||||+.-.|..     .|.-.+..
T Consensus       136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~-----~G~~lv~D  177 (312)
T 1knx_A          136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGD  177 (312)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEE
T ss_pred             ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH-----cCCEEEeC
Confidence            5677765555 577889999999999998766643     45555543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=87.73  E-value=0.23  Score=43.76  Aligned_cols=27  Identities=30%  Similarity=0.257  Sum_probs=21.9

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      +..+.|.|+.|+||||+++.+......
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            345679999999999999998876543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=87.58  E-value=0.1  Score=47.38  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.5

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|+.|+||||+++.+++
T Consensus        32 ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            368999999999999988775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=87.65  E-value=0.23  Score=51.34  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|..|+|||||++.|+|-.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999953

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=87.54  E-value=0.26  Score=52.02  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +..+++++|++|+|||||+.-|+..
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~  124 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYY  124 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999943

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=87.51  E-value=0.19  Score=52.15  Aligned_cols=37  Identities=16%  Similarity=0.086  Sum_probs=27.6

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccC---CcceEEEcCe
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGF  483 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i~g~  483 (510)
                      +..+.|.||+|+||||+++.+.+....   ..--++++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~  169 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            457889999999999999999987632   2334555543

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=87.38  E-value=0.28  Score=51.17  Aligned_cols=39  Identities=28%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      +.+-+||..+|.|+.|+|||||+.+|+.-.....+.+.|
T Consensus       148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V  186 (482)
T 2ck3_D          148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV  186 (482)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEE
T ss_pred             cccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEE
Confidence            578999999999999999999999887754333333443

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=87.28  E-value=0.29  Score=50.17  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++||.++|||||++.|+|..
T Consensus        12 ~I~iiG~~~~GKSTLi~~L~g~~   34 (410)
T 1kk1_A           12 NIGMVGHVDHGKTTLTKALTGVW   34 (410)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=87.26  E-value=0.18  Score=46.47  Aligned_cols=27  Identities=44%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             EEEecCCCCchhHHHHH-HcCC----ccCCcc
Q 010435          450 FCLLGPNGAGKTTTISC-LTGI----TPVTGG  476 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~-l~G~----~~pt~G  476 (510)
                      ++++|+.|+||||+++. +.|.    +.|+.|
T Consensus        18 i~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~   49 (221)
T 3gj0_A           18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG   49 (221)
T ss_dssp             EEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence            67999999999999998 5553    345555

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=87.26  E-value=0.37  Score=44.95  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             eeeeeeE-EEeCCcEEEEecCCCCchhHHHHHH
Q 010435          436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       436 av~~lsl-~v~~gei~~llG~nGaGKsTl~~~l  467 (510)
                      .||.+-= .+++|+++.|.|+.|+||||+.--+
T Consensus        18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQF   50 (251)
T ss_dssp             TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHH
T ss_pred             HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence            3444432 5899999999999999999997544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=87.24  E-value=0.23  Score=49.78  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|..|+||||+++.|+|.-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=87.20  E-value=0.28  Score=46.22  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=18.6

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+||+|+.||||||..+.|+-
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHH
Confidence            479999999999999998854

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=87.07  E-value=0.22  Score=50.39  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=22.6

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++..++++|..|+||||++|.|+|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4667899999999999999999986

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=86.68  E-value=0.32  Score=49.47  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      |.=+.+-+||..+|.|+.|+||||++.+|+...
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence            344678999999999999999999999888754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=86.65  E-value=0.35  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++|+|..|+||||+++.+.+-
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999997765

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=86.60  E-value=0.21  Score=52.17  Aligned_cols=39  Identities=13%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCcc-------CC-----cceEEEcCeec
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITP-------VT-----GGDALIYGFSI  485 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~-------pt-----~G~i~i~g~~i  485 (510)
                      |=.++|+|+.|+|||||++.|+|...       .+     ...+.++|.++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v  274 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV  274 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEE
Confidence            33489999999999999999987521       11     13567787654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=86.40  E-value=0.33  Score=41.81  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=22.3

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      +.-+-|.|+.|+|||++.+.|......
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            345679999999999999999876544

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=86.23  E-value=0.31  Score=52.06  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|..|+||||+++.|.|.-
T Consensus        67 ~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           67 MVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68899999999999999999964

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=86.13  E-value=0.24  Score=50.09  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.7

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++..++++|..|+||||++|.|.|.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            5677899999999999999999985

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=85.95  E-value=0.37  Score=49.34  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++||.++|||||++.|+|..
T Consensus        10 ~I~iiG~~d~GKSTLi~~L~g~~   32 (408)
T 1s0u_A           10 NIGMVGHVDHGKTSLTKALTGVW   32 (408)
T ss_dssp             EEEEESCTTSSHHHHHHHHHSCC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=85.80  E-value=0.35  Score=49.94  Aligned_cols=23  Identities=30%  Similarity=0.729  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++++|+.|+|||||++.|+|..
T Consensus       177 ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          177 QFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=85.64  E-value=0.41  Score=45.22  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      -++.+.|.-|+||||+++.|+..+.
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4778999999999999999985544

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=85.56  E-value=0.44  Score=43.92  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ..+++=|.-||||||..+.|.-.+.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4577889999999999999987664

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=85.55  E-value=0.32  Score=49.69  Aligned_cols=22  Identities=32%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++||.|+|||||++.|++.
T Consensus        13 ~I~iiG~~~~GKSTLi~~L~~~   34 (405)
T 2c78_A           13 NVGTIGHVDHGKTTLTAALTYV   34 (405)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Confidence            5789999999999999999874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=85.25  E-value=0.41  Score=48.94  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .+++|.||+|+||||+...|+..+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            368899999999999999887654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=85.01  E-value=0.36  Score=49.27  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++++||.|+|||||++.|++.
T Consensus         5 ~I~iiG~~~~GKSTLi~~L~~~   26 (397)
T 1d2e_A            5 NVGTIGHVDHGKTTLTAAITKI   26 (397)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHhCh
Confidence            4789999999999999999984

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=84.94  E-value=0.36  Score=48.10  Aligned_cols=39  Identities=18%  Similarity=0.082  Sum_probs=29.0

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccC-------CcceEEEcCee
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGFS  484 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~p-------t~G~i~i~g~~  484 (510)
                      .+..+.|.||.|+||||+++.+......       ....++++..+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            3457789999999999999999887643       23456676543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=84.76  E-value=0.15  Score=48.61  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=19.2

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.|.||.|+||||+.+.+++..
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            5688999999999999998743

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=84.70  E-value=0.42  Score=51.39  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      -+++++|+.|+|||||+|.|+|..
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCC
Confidence            467899999999999999999964

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=84.65  E-value=0.43  Score=50.71  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++|+|..|+||||+++.++|-.
T Consensus        44 V~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           44 VHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEESSSCSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999999864

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=84.64  E-value=0.38  Score=47.71  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|+.|+|||||++.+++-.
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~~~  189 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKLGE  189 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCSSC
T ss_pred             eEEEECCCCccHHHHHHHHhCCC
Confidence            47899999999999999998754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=84.45  E-value=0.35  Score=50.74  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++|+|+.|+|||||++.|+|.
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=84.34  E-value=0.36  Score=51.30  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      -.++++||.|+|||||++.|++
T Consensus        14 ~~I~IiG~~~aGKTTL~~~Ll~   35 (529)
T 2h5e_A           14 RTFAIISHPDAGKTTITEKVLL   35 (529)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHh
Confidence            4689999999999999999985

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=84.30  E-value=0.27  Score=51.01  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=33.4

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      ..||.+.-.+++|+++.|.|++|+||||+..-++.....
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~  226 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL  226 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            468888777999999999999999999998888776543

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=84.05  E-value=0.39  Score=51.63  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      .+.++.|.|+.|+||||+++.|...+......|.+.
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            467999999999999999999987665544555543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=83.81  E-value=0.47  Score=50.43  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             cEEEEecCCCCchhHHHHHHc
Q 010435          448 QLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~  468 (510)
                      ..++|+||.|||||||++.|+
T Consensus        14 r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           14 RTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            368999999999999999995

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=83.81  E-value=0.54  Score=48.65  Aligned_cols=27  Identities=30%  Similarity=0.382  Sum_probs=22.5

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      ..+++++|++|+||||+..-|+..+.-
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~  126 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLRE  126 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            458889999999999999999865543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=83.70  E-value=0.43  Score=51.48  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++++||.|+|||||++.|.|.
T Consensus         7 ~V~IvGh~d~GKTTLl~~L~~~   28 (594)
T 1g7s_A            7 IVSVLGHVDHGKTTLLDHIRGS   28 (594)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6889999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=83.70  E-value=0.57  Score=46.63  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +|..+-|.||.|+||||+.+.++.........+.+++..
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  107 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE  107 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence            356788999999999999999998876554556666543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=83.66  E-value=0.42  Score=48.44  Aligned_cols=37  Identities=30%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc-----------CCcceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~-----------pt~G~i~i~g~~i  485 (510)
                      -+||+|..-+|||||+|.|||--.           |..|.+.+.|..+
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i  121 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI  121 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence            479999999999999999999642           2347777777543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=83.40  E-value=0.63  Score=45.71  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.8

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++.+-|.||.|+|||+++..|+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            57888999999999999999987655

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=83.29  E-value=0.32  Score=50.61  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=24.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      .+.|.||.|+||||+.+.|+......-..+
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            477999999999999999999876543333

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=83.23  E-value=0.59  Score=45.29  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +..+.|.||.|+||||+.+.++..+
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999998777655

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=83.22  E-value=0.56  Score=42.28  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.|.|+.|+||||+.+.+....
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999988654

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=83.09  E-value=0.57  Score=42.72  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=19.6

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .+|++..+.|+-|+||||++--+.
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a   29 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRI   29 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHH
Confidence            457899999999999998765443

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=83.06  E-value=0.72  Score=45.73  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=27.5

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+|.+--.+.+|.++.|.|+.|+||||+...++.
T Consensus       112 ~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             EEEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3444334788999999999999999999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	4e-13
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-12
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	4e-12
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-11
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-10
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-10
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-10
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-10
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-09
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-09
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-09
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-09
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	3e-09
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	4e-09
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	7e-09
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	8e-09
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-08
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-07
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-07
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-07
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-04

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 66.6 bits (162), Expect = 4e-13
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           AV ++ L K                      +KG+   I + ++F L+GPNGAGKTTT+ 
Sbjct: 2   AVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLR 46

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
            ++ +   + G   ++G ++        ++K I   P+
Sbjct: 47  IISTLIKPSSGIVTVFGKNVV--EEPHEVRKLISYLPE 82

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 18/99 (18%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V V++  L K F                   A+  L + I   +   LLGP+G GKTTT+
Sbjct: 5   VEVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTL 49

Query: 465 SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
             + G+   T G         R    +    ++I +  Q
Sbjct: 50  RMIAGLEEPTEGRIYFGD---RDVTYLPPKDRNISMVFQ 85

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 64.2 bits (156), Expect = 4e-12
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   +VK F                   A+ G+ +++ K  +  ++GPNG+GK+T I+ 
Sbjct: 5   LRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINV 49

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           +TG      G        I +          I    Q
Sbjct: 50  ITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 86

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + K F            Q T    A+  + +++   Q++ ++G +GAGK+T I C
Sbjct: 2   IKLSNITKVFH-----------QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 50

Query: 467 LTGITPVTGGDALIYGFSI--RSSVSMTNIQKSIGVCPQ 503
           +  +   T G  L+ G  +   S   +T  ++ IG+  Q
Sbjct: 51  VNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 89

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 15/101 (14%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V + ++ + K F   +               A+  + +NI   + F +LGP+GAGKTT +
Sbjct: 2   VRIIVKNVSKVFKKGKV-------------VALDNVNINIENGERFGILGPSGAGKTTFM 48

Query: 465 SCLTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIGVCPQ 503
             + G+   + G+       +     + +    + IG+  Q
Sbjct: 49  RIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ 89

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 15/100 (15%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           ++ ++++ L   +                  HAIKG+ + + + Q+  L+G NGAGKTTT
Sbjct: 4   DIVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTT 48

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           +S + G+     G  +  G  I +  +    +  I + P+
Sbjct: 49  LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPE 88

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           VQ++ + K +                     K + ++I + +    +GP+G GK+T +  
Sbjct: 1   VQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRM 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           + G+  +T GD  I    +         ++ +G+  Q
Sbjct: 46  IAGLETITSGDLFIGEKRMN---DTPPAERGVGMVFQ 79

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 15/79 (18%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + +  L K + G                  +KG+ +      +  ++G +G+GK+T + C
Sbjct: 3   LHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRC 47

Query: 467 LTGITPVTGGDALIYGFSI 485
           +  +   + G  ++ G +I
Sbjct: 48  INFLEKPSEGAIIVNGQNI 66

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + KT+                  +A+K + +NI + +   ++GP+G+GK+T ++ 
Sbjct: 2   IKLKNVTKTYK-----------MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNI 50

Query: 467 LTGITPVTGGDALIYGFSIRS---SVSMTNIQKSIGVCPQ 503
           +  +   T G+  I                 +  IG   Q
Sbjct: 51  IGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             ++ + + I K  +    GPNG GKTT +  ++       G+ +  G      V +T +
Sbjct: 15  PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG------VPITKV 68

Query: 495 QKSIGVCPQ 503
           +  I   P+
Sbjct: 69  KGKIFFLPE 77

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 400 IPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           I      + I  +   +                    +K + ++I K +    +G +G G
Sbjct: 10  IEIKQGRIDIDHVSFQYNDNEA-------------PILKDINLSIEKGETVAFVGMSGGG 56

Query: 460 KTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507
           K+T I+ +     VT G  LI G +I+      +++  IG+  Q  + 
Sbjct: 57  KSTLINLIPRFYDVTSGQILIDGHNIK-DFLTGSLRNQIGLVQQDNIL 103

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             ++ +      + +    GP+G GK+T  S L      T G+  I G  I  ++S+ N 
Sbjct: 16  QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID-NISLENW 74

Query: 495 QKSIG-VCPQVTLFS 508
           +  IG V     + +
Sbjct: 75  RSQIGFVSQDSAIMA 89

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            VQ + +   +P    +              ++GL   +   ++  L+GPNG+GK+T  +
Sbjct: 11  LVQFQDVSFAYPNRPDV------------LVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 58

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-VTLFS 508
            L  +   TGG  L+ G  +        + + +    Q   +F 
Sbjct: 59  LLQNLYQPTGGQLLLDGKPLP-QYEHRYLHRQVAAVGQEPQVFG 101

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 19/97 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I  L + +                   ++  L + +   + F +LGP GAGKT  +  
Sbjct: 2   IEIESLSRKWKN----------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLEL 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           + G      G  L+ G   +    ++  +  I    Q
Sbjct: 46  IAGFHVPDSGRILLDG---KDVTDLSPEKHDIAFVYQ 79

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 54.2 bits (130), Expect = 7e-09
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 15/80 (18%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            V++  + K F                   A++ + + +   +   LLGP+G GKTTT+ 
Sbjct: 3   GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLR 47

Query: 466 CLTGITPVTGGDALIYGFSI 485
            + G+   + G   I    +
Sbjct: 48  MIAGLEEPSRGQIYIGDKLV 67

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (129), Expect = 8e-09
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             +  L   +   ++  L+GPNGAGK+T ++ + G+T    G     G  +  + S T +
Sbjct: 13  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLE-AWSATKL 70

Query: 495 QKSIGVCPQV 504
                   Q 
Sbjct: 71  ALHRAYLSQQ 80

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 400 IPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           I      ++ R +  T+PG                 A++ + + I   +   L+G +G+G
Sbjct: 7   IDRATGDLEFRNVTFTYPGREV-------------PALRNINLKIPAGKTVALVGRSGSG 53

Query: 460 KTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           K+T  S +T    +  G  L+ G  +R   ++ +++  + +  Q
Sbjct: 54  KSTIASLITRFYDIDEGHILMDGHDLR-EYTLASLRNQVALVSQ 96

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +  + ++I + ++  ++G +G+GK+T    +        G  LI G  +        ++
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA-LADPNWLR 76

Query: 496 KSIGVCPQ 503
           + +GV  Q
Sbjct: 77  RQVGVVLQ 84

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
            +K + +NI K ++  + G  G+GKT+ +  + G    + G     G
Sbjct: 51  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 97

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 442 VNIAKDQ-LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGV 500
           V+    +    LLGP GAGK+  +  + GI     G+  + G  I     +   ++ IG 
Sbjct: 18  VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT---PLPPERRGIGF 74

Query: 501 CPQ 503
            PQ
Sbjct: 75  VPQ 77

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 6/35 (17%), Positives = 9/35 (25%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486
           + G  G GKTT +  +                   
Sbjct: 5   ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.86
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.86
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.85
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.85
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.85
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.84
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.84
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.84
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.83
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.83
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.83
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.83
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.82
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.82
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.8
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.8
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.79
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.69
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.63
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.55
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.21
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.42
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.97
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.89
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.65
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.6
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.57
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.47
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.31
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.26
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.19
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.17
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.1
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.08
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.06
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.89
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.82
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.66
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.63
d1okkd2	207	GTPase domain of the signal recognition particle r	95.59
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.43
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.35
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.34
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.33
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.28
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.23
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.22
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.2
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.18
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.17
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.15
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.11
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.11
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.08
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.05
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.85
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.83
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.81
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.73
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.72
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.67
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.66
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.59
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.59
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.52
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.5
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.42
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.39
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.37
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.37
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.35
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.32
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.18
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.06
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.02
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.94
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.93
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.91
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.82
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.71
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.67
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.66
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.63
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.56
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.48
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.39
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.3
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.3
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.28
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.23
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	93.22
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.13
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.06
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.02
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.95
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.75
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.74
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.66
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.56
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.53
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.49
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.46
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.45
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.39
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.3
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.18
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.05
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.94
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	91.88
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.84
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.81
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.81
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	91.76
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.76
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.74
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.7
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	91.69
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	91.54
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	91.47
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.43
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.4
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	91.37
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.37
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.31
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.31
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.26
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.11
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	91.11
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.09
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.08
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.07
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.99
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	90.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	90.86
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	90.8
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.75
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.7
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.57
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	90.44
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	90.41
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.4
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	90.3
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	90.2
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.19
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.01
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.89
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.86
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.84
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	89.75
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	89.72
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	89.69
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	89.65
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.64
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	89.62
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	89.61
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.54
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	89.53
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	89.38
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	89.35
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	89.33
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.3
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	89.23
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.19
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	89.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	88.94
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	88.92
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.9
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.85
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	88.8
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.76
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	88.71
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	88.7
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	88.63
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	88.58
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	88.54
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	88.47
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	88.41
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	88.11
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	87.95
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	87.7
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	87.61
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	87.47
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	87.4
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.36
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	87.14
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	87.06
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	86.96
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	86.92
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.76
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	86.63
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	86.49
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	86.47
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.46
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	86.25
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	86.11
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.75
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	85.74
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	85.7
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	85.57
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	85.51
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	85.18
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.0
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	84.49
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.36
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.34
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	84.1
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	84.02
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	83.29
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	83.23
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	83.13
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	82.87
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	82.64
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	82.35
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	82.12
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.78
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.38
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	81.38
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	81.19
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	80.57
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	80.03
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	80.02

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2e-22  Score=190.59  Aligned_cols=83  Identities=22%  Similarity=0.441  Sum_probs=74.8

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      |+++||+|.|++.               .||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 Iev~nv~k~yg~~---------------~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~   65 (232)
T d2awna2           1 VQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN   65 (232)
T ss_dssp             EEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCT
T ss_pred             CEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECC
Confidence            6899999999542               6999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +   ....|+++|||||++.|
T Consensus        66 ~---~~~~~r~ig~v~Q~~~l   83 (232)
T d2awna2          66 D---TPPAERGVGMVFQSYAL   83 (232)
T ss_dssp             T---SCGGGTCEEEECSSCCC
T ss_pred             C---Cchhhceeeeecccccc
Confidence            3   33457889999998755

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=2.1e-22  Score=191.10  Aligned_cols=84  Identities=26%  Similarity=0.414  Sum_probs=72.8

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .|+++||+|.|++.               .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus         6 ~I~v~nlsk~yg~~---------------~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i   70 (239)
T d1v43a3           6 EVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV   70 (239)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCE---------------EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceec
Confidence            48999999999642               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .+   ....|+.+|||||+..|
T Consensus        71 ~~---~~~~~r~ig~v~Q~~~l   89 (239)
T d1v43a3          71 TY---LPPKDRNISMVFQSYAV   89 (239)
T ss_dssp             TT---SCGGGGTEEEEEC----
T ss_pred             cc---CCcccceEEEEeechhh
Confidence            53   23456789999998755

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=5.4e-22  Score=189.18  Aligned_cols=85  Identities=28%  Similarity=0.468  Sum_probs=77.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      +|+++||+|.|+++               +||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 aI~v~nl~k~yg~~---------------~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i   66 (238)
T d1vpla_           2 AVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV   66 (238)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred             CEEEEeEEEEECCE---------------EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEec
Confidence            58999999999643               699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhccEEEEccCCCc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  ....+.|+.+|||||.+.+
T Consensus        67 ~--~~~~~~~~~i~~vpq~~~~   86 (238)
T d1vpla_          67 V--EEPHEVRKLISYLPEEAGA   86 (238)
T ss_dssp             T--TCHHHHHTTEEEECTTCCC
T ss_pred             c--cChHHHHhhEeEeeecccc
Confidence            5  3556889999999997643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.85  E-value=6.7e-22  Score=186.46  Aligned_cols=82  Identities=22%  Similarity=0.436  Sum_probs=74.4

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|++                .||+||||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 i~v~nlsk~y~~----------------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~   65 (229)
T d3d31a2           2 IEIESLSRKWKN----------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT   65 (229)
T ss_dssp             EEEEEEEEECSS----------------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCC----------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEecc
Confidence            789999999953                4999999999999999999999999999999999999999999999999995


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      +   ....|+++||+||+..|
T Consensus        66 ~---~~~~~r~ig~v~Q~~~l   83 (229)
T d3d31a2          66 D---LSPEKHDIAFVYQNYSL   83 (229)
T ss_dssp             T---SCHHHHTCEEECTTCCC
T ss_pred             c---cchhHhcceeecccccc
Confidence            3   33457899999998765

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.85  E-value=1.6e-21  Score=186.33  Aligned_cols=89  Identities=27%  Similarity=0.493  Sum_probs=77.2

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..++++||+|.|++.               +||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus         4 d~~Lev~~l~k~yg~~---------------~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~   68 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ   68 (240)
T ss_dssp             SEEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             ceEEEEeeEEEEECCE---------------EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccc
Confidence            4578999999999642               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++.........|..+||+||...|
T Consensus        69 ~i~~~~~~~~~r~gi~~~~q~~~l   92 (240)
T d1ji0a_          69 DITNKPAHVINRMGIALVPEGRRI   92 (240)
T ss_dssp             ECTTCCHHHHHHTTEEEECSSCCC
T ss_pred             ccccccHHHHHHhcccccCccccc
Confidence            996433333346679999997644

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.1e-21  Score=186.40  Aligned_cols=90  Identities=22%  Similarity=0.444  Sum_probs=78.5

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|+.+.           +++.||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 i~v~nlsk~y~~~~-----------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~   70 (240)
T d3dhwc1           2 IKLSNITKVFHQGT-----------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT   70 (240)
T ss_dssp             EEEEEEEEEEECSS-----------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEEC
T ss_pred             EEEEeEEEEeCCCC-----------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEee
Confidence            78999999996532           2457999999999999999999999999999999999999999999999999995


Q ss_pred             C--cccHHHhhccEEEEccCCCc
Q 010435          487 S--SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~--~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      .  ..+..+.|+++||+||+..|
T Consensus        71 ~~~~~~~~~~rr~ig~VfQ~~~l   93 (240)
T d3dhwc1          71 TLSESELTKARRQIGMIFQHFNL   93 (240)
T ss_dssp             TTCHHHHHHHHHHEEECCSSCCC
T ss_pred             eCChhhhhhhhcccccccccccc
Confidence            3  23456678899999997644

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.84  E-value=8.5e-22  Score=187.18  Aligned_cols=87  Identities=22%  Similarity=0.380  Sum_probs=75.6

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .|+++||+|.|++.               .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~i~v~nl~k~yg~~---------------~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i   67 (240)
T d1g2912           3 GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV   67 (240)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             cEEEEeEEEEECCE---------------EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEe
Confidence            58999999999642               699999999999999999999999999999999999999999999999998


Q ss_pred             CCccc---HHHhhccEEEEccCCCc
Q 010435          486 RSSVS---MTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~~~---~~~~r~~iG~cpQ~~~L  507 (510)
                      .+..+   ....|+.+|||||++.|
T Consensus        68 ~~~~~~~~~~~~~r~ig~v~Q~~~L   92 (240)
T d1g2912          68 ADPEKGIFVPPKDRDIAMVFQSYAL   92 (240)
T ss_dssp             EEGGGTEECCGGGSSEEEECSCCCC
T ss_pred             cccchhhhcccccccceecccchhh
Confidence            42111   22346789999998765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=1.8e-21  Score=184.01  Aligned_cols=90  Identities=22%  Similarity=0.390  Sum_probs=76.3

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||+|.|+...           +++.||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         2 I~i~nlsk~y~~~~-----------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~   70 (230)
T d1l2ta_           2 IKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN   70 (230)
T ss_dssp             EEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred             EEEEeEEEEeCCCC-----------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcC
Confidence            78999999996532           2456999999999999999999999999999999999999999999999999996


Q ss_pred             Ccc--cHHHh-hccEEEEccCCCc
Q 010435          487 SSV--SMTNI-QKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~--~~~~~-r~~iG~cpQ~~~L  507 (510)
                      ...  +..+. |++||||||+..|
T Consensus        71 ~~~~~~~~~~r~~~ig~v~Q~~~l   94 (230)
T d1l2ta_          71 DLDDDELTKIRRDKIGFVFQQFNL   94 (230)
T ss_dssp             TCCHHHHHHHHHHHEEEECTTCCC
T ss_pred             cCChhhcchhhcceEEEEecchhh
Confidence            422  23344 4579999998654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=2.3e-21  Score=184.08  Aligned_cols=89  Identities=24%  Similarity=0.384  Sum_probs=76.9

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .|+++||+|.|++.             ++.||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|.++
T Consensus         3 ~i~v~nlsk~y~~g-------------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i   69 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV   69 (242)
T ss_dssp             CEEEEEEEEEEGGG-------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEECCC-------------CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEe
Confidence            48999999999532             24799999999999999999999999999999999999999999999999998


Q ss_pred             CC--cccHHHhhccEEEEccCCCc
Q 010435          486 RS--SVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~--~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ..  .......|+++||+||+..|
T Consensus        70 ~~~~~~~~~~~rr~ig~vfQ~~~L   93 (242)
T d1oxxk2          70 ASNGKLIVPPEDRKIGMVFQTWAL   93 (242)
T ss_dssp             EETTEESSCGGGSCEEEEETTSCC
T ss_pred             ecCchhhcchhhccceEEeccccc
Confidence            42  12244557889999998755

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.83  E-value=4.7e-21  Score=184.65  Aligned_cols=86  Identities=23%  Similarity=0.344  Sum_probs=76.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               +||+||||++++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus         4 iL~v~nlsk~yg~~---------------~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i   68 (254)
T d1g6ha_           4 ILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI   68 (254)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCe---------------EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence            58999999999642               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhccEEEEccCCC
Q 010435          486 RSSVSMTNIQKSIGVCPQVTL  506 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~  506 (510)
                      ......+..++.+|++||...
T Consensus        69 ~~~~~~~~~~~gi~~v~Q~~~   89 (254)
T d1g6ha_          69 TNKEPAELYHYGIVRTFQTPQ   89 (254)
T ss_dssp             TTCCHHHHHHHTEEECCCCCG
T ss_pred             cchhHHHHHHhcCCccCCccc
Confidence            754444445667999999764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.9e-21  Score=182.20  Aligned_cols=91  Identities=22%  Similarity=0.383  Sum_probs=81.8

Q ss_pred             CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      +..|+++||++.|+++.            ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus         9 ~g~I~~~nvsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~   76 (251)
T d1jj7a_           9 EGLVQFQDVSFAYPNRP------------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGK   76 (251)
T ss_dssp             CCCEEEEEEEECCTTST------------TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             cceEEEEEEEEECCCCC------------CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCE
Confidence            44699999999997532            236999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhccEEEEccCCCc
Q 010435          484 SIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       484 ~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |++. .+.+.+|+++|||||++.|
T Consensus        77 ~i~~-~~~~~~r~~i~~v~Q~~~l   99 (251)
T d1jj7a_          77 PLPQ-YEHRYLHRQVAAVGQEPQV   99 (251)
T ss_dssp             EGGG-BCHHHHHHHEEEECSSCCC
T ss_pred             ecch-hhhHHHHHHhhhccccccc
Confidence            9963 5678899999999998865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1e-20  Score=180.52  Aligned_cols=87  Identities=16%  Similarity=0.308  Sum_probs=79.7

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      |+++||++.|++..             ..+|+||||+|++||++||+|+|||||||++++|+|+++|++|+|.++|.|+.
T Consensus         2 I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~   68 (241)
T d2pmka1           2 ITFRNIRFRYKPDS-------------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA   68 (241)
T ss_dssp             EEEEEEEEESSTTS-------------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             eEEEEEEEEeCCCC-------------cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEec
Confidence            78999999996542             26999999999999999999999999999999999999999999999999997


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      . .+.+++|+++|||||++.|
T Consensus        69 ~-~~~~~lr~~i~~v~Q~~~l   88 (241)
T d2pmka1          69 L-ADPNWLRRQVGVVLQDNVL   88 (241)
T ss_dssp             T-SCHHHHHHHEEEECSSCCC
T ss_pred             c-cchhhhhceEEEEeccccc
Confidence            4 6788899999999998865

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.82  E-value=1.2e-20  Score=181.88  Aligned_cols=87  Identities=17%  Similarity=0.366  Sum_probs=76.4

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++.               .||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~Lev~nl~k~yg~~---------------~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i   66 (258)
T d1b0ua_           2 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI   66 (258)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCE---------------EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEe
Confidence            48999999999642               699999999999999999999999999999999999999999999999998


Q ss_pred             CCc------------ccHHHhhccEEEEccCCCc
Q 010435          486 RSS------------VSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       486 ~~~------------~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ...            ......|+++|||||+..|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l  100 (258)
T d1b0ua_          67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  100 (258)
T ss_dssp             CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred             ccCCccchhcccccHhHHHHHhcceEEEEechhh
Confidence            421            1234678899999998654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.82  E-value=7.9e-21  Score=181.61  Aligned_cols=86  Identities=22%  Similarity=0.393  Sum_probs=78.1

Q ss_pred             EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++++||++.|+++.              .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 le~knvsf~Y~~~~--------------~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~   67 (242)
T d1mv5a_           2 LSARHVDFAYDDSE--------------QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID   67 (242)
T ss_dssp             EEEEEEEECSSSSS--------------CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred             EEEEEEEEECCCCC--------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEec
Confidence            78999999996531              5899999999999999999999999999999999999999999999999996


Q ss_pred             CcccHHHhhccEEEEccCCCc
Q 010435          487 SSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       487 ~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      + .+.+++|+++|||||++.|
T Consensus        68 ~-~~~~~~r~~i~~v~Q~~~l   87 (242)
T d1mv5a_          68 N-ISLENWRSQIGFVSQDSAI   87 (242)
T ss_dssp             T-TSCSCCTTTCCEECCSSCC
T ss_pred             c-ccHHHHHhheEEEcccccc
Confidence            4 4567789999999998754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=6.2e-20  Score=176.47  Aligned_cols=89  Identities=21%  Similarity=0.444  Sum_probs=81.1

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..|+++||++.|+++.             ..+|+|+||+|++||++||+|||||||||++++|+|+++|++|+|+++|.+
T Consensus        12 g~I~~~nvsf~Y~~~~-------------~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~   78 (253)
T d3b60a1          12 GDLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD   78 (253)
T ss_dssp             CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred             eEEEEEEEEEEeCCCC-------------CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcc
Confidence            3599999999997542             269999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++. .+.+.+|+.+|||||++.|
T Consensus        79 i~~-~~~~~~r~~i~~v~Q~~~l  100 (253)
T d3b60a1          79 LRE-YTLASLRNQVALVSQNVHL  100 (253)
T ss_dssp             TTT-BCHHHHHHTEEEECSSCCC
T ss_pred             cch-hhhhhhhheEEEEeecccc
Confidence            974 5788899999999998865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.80  E-value=5.2e-20  Score=176.88  Aligned_cols=89  Identities=22%  Similarity=0.384  Sum_probs=81.2

Q ss_pred             ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ..|+++||+++|+++.             ..+|+|+||+|++||++||+|+|||||||++++|+|+++|++|+|.++|.|
T Consensus        15 g~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~   81 (255)
T d2hyda1          15 GRIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN   81 (255)
T ss_dssp             CCEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred             CEEEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEE
Confidence            3599999999997642             258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhccEEEEccCCCc
Q 010435          485 IRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       485 i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++. .+.+++|+++|||||++.|
T Consensus        82 i~~-~~~~~lr~~i~~v~Q~~~l  103 (255)
T d2hyda1          82 IKD-FLTGSLRNQIGLVQQDNIL  103 (255)
T ss_dssp             GGG-SCHHHHHHTEEEECSSCCC
T ss_pred             ccc-CCHHHhhheeeeeeccccC
Confidence            963 5688999999999998865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=8.6e-20  Score=169.66  Aligned_cols=81  Identities=22%  Similarity=0.393  Sum_probs=73.7

Q ss_pred             eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .++++||+|.|++                ++++|+||++++||++||+|||||||||++++|+|+++|++|+|.++|.++
T Consensus         2 ~lev~~ls~~y~~----------------~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i   65 (200)
T d1sgwa_           2 KLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI   65 (200)
T ss_dssp             EEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred             eEEEEEEEEEeCC----------------eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEeh
Confidence            4899999999942                589999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhccEEEEccCCCcc
Q 010435          486 RSSVSMTNIQKSIGVCPQVTLFS  508 (510)
Q Consensus       486 ~~~~~~~~~r~~iG~cpQ~~~L~  508 (510)
                      .      +.+++++|+||...+.
T Consensus        66 ~------~~~~~i~~~~~~~~~~   82 (200)
T d1sgwa_          66 T------KVKGKIFFLPEEIIVP   82 (200)
T ss_dssp             G------GGGGGEEEECSSCCCC
T ss_pred             h------HhcCcEEEEeecccCC
Confidence            3      4678999999987663

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.69  E-value=9.6e-18  Score=158.53  Aligned_cols=65  Identities=26%  Similarity=0.474  Sum_probs=58.4

Q ss_pred             eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      |+||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.++.+   ....|++||||||++.|
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~---~~~~~r~ig~v~Q~~~l   81 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP---LPPERRGIGFVPQDYAL   81 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT---SCTTTSCCBCCCSSCCC
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCc---CCHHHcCceeeccchhh
Confidence            7999995 68999999999999999999999999999999999999953   33457899999998765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.4e-16  Score=150.94  Aligned_cols=70  Identities=24%  Similarity=0.338  Sum_probs=62.3

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|.++.. ....+++...++.+|...+
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~-~~~~~~~~~~~~~~~~~~~   83 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEA-WSATKLALHRAYLSQQQTP   83 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGG-SCHHHHHHHEEEECSCCCC
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCc-CCHHHHHhhceeeeccccC
Confidence            799999999999999999999999999999999976 689999999999853 4566777889999997654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.1e-15  Score=146.65  Aligned_cols=59  Identities=24%  Similarity=0.455  Sum_probs=55.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF  507 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L  507 (510)
                      ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|              +++||||++.|
T Consensus        50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~l  108 (281)
T d1r0wa_          50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--------------RVSFCSQFSWI  108 (281)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--------------CEEEECSSCCC
T ss_pred             eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--------------EEEEEeccccc
Confidence            699999999999999999999999999999999999999999999987              38999998765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.21  E-value=1.6e-07  Score=82.99  Aligned_cols=36  Identities=17%  Similarity=0.068  Sum_probs=33.1

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      ++|.||||||||||++.|+|.++|+.|.+.+.|.+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~   38 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD   38 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcch
Confidence            689999999999999999999999999999988654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00027  Score=64.57  Aligned_cols=35  Identities=14%  Similarity=0.245  Sum_probs=26.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      +|++.+++|++|+|||||+|.|.|...-..|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            68999999999999999999999976666666643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=4.3e-05  Score=67.42  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=28.0

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ..++.++++.+| ++.|+|+|||||||++..|.-.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            466777777664 8999999999999999998643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00026  Score=60.69  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      ++++.|++|||||||++.|...+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            7899999999999999999865544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.60  E-value=0.00023  Score=65.19  Aligned_cols=35  Identities=14%  Similarity=0.285  Sum_probs=22.8

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      +|++..++|++|+|||||+|.|.|...-..|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            57899999999999999999999987666677653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.57  E-value=0.00038  Score=61.15  Aligned_cols=26  Identities=35%  Similarity=0.730  Sum_probs=23.3

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      |.++.|+||+||||||+++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999976654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.0008  Score=63.75  Aligned_cols=22  Identities=32%  Similarity=0.712  Sum_probs=19.4

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+++|+|+|||||||++..|.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3899999999999999988843

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.00039  Score=60.07  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      ++.|.|++|+|||||++.+...+....+.+.+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            5679999999999999999998877666554433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.19  E-value=0.00074  Score=58.14  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVT  474 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt  474 (510)
                      .++++.|.+|||||||++-|...+...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            378999999999999999888776654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0011  Score=56.82  Aligned_cols=27  Identities=22%  Similarity=0.464  Sum_probs=23.9

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.10  E-value=0.0014  Score=56.18  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=27.5

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      .|+++.|.|++||||||+.+.|...+..  --+.++|
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~   37 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS   37 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence            5889999999999999999999886532  1345555

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.0022  Score=55.88  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=27.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc------------cCCcceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT------------PVTGGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~------------~pt~G~i~i~g~~i  485 (510)
                      .+|++|+.|+|||||++.|+|.-            .+..|.+.++|.++
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~   58 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY   58 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCcee
Confidence            36999999999999999998743            22245677777653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.06  E-value=0.0011  Score=58.61  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|+.||||||+++.|+|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            48999999999999999999853

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.002  Score=63.49  Aligned_cols=27  Identities=26%  Similarity=0.715  Sum_probs=22.5

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      ++...+.+++|+|+|||||||++..|+
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            344556799999999999999999873

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.82  E-value=0.0019  Score=55.22  Aligned_cols=27  Identities=19%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++|.++-|.|+.||||||+.+.|+--+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998554

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.66  E-value=0.0024  Score=57.82  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++++||.|||||||++-|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6789999999999999999743

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0027  Score=56.89  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=22.6

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .|.++.|+||+|+||||+++.|.-..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999999886543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.59  E-value=0.0034  Score=56.33  Aligned_cols=39  Identities=31%  Similarity=0.382  Sum_probs=27.3

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      ++.++.++||+|+|||||+-=|+..+.-..-+|-+=..|
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~D   43 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD   43 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEec
Confidence            567999999999999999877766555333344443333

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0033  Score=54.10  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++|+|+.|+|||||++.|+|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999974

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.35  E-value=0.0038  Score=53.60  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++++|+.|+|||||++-|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.34  E-value=0.0031  Score=54.59  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++|+|+.|+|||||++.|+|--
T Consensus         3 I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.33  E-value=0.0041  Score=53.04  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +|=.+.|.|+.||||||+.+.|+--+
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            45568899999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.28  E-value=0.0029  Score=54.39  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=24.8

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      .+++|.|+.||||||+.+.|.-.+......+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~   32 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY   32 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence            5889999999999999999987665444443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.23  E-value=0.0046  Score=52.62  Aligned_cols=26  Identities=31%  Similarity=0.663  Sum_probs=23.1

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .+++.|.|++||||||+.+.|...+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46888999999999999999998764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.0034  Score=56.56  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++..++.++||||+|||||+-=|+-.+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999766665443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.20  E-value=0.003  Score=54.94  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999763

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.18  E-value=0.0034  Score=56.43  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i  480 (510)
                      +..++.++||+|+|||||+-=|+-.+.-...+|-+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l   45 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGL   45 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence            44689999999999999977666555433334444

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.17  E-value=0.0046  Score=51.59  Aligned_cols=35  Identities=20%  Similarity=0.143  Sum_probs=26.2

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      +++.|.|++||||||+.+-|..   ...|...++..++
T Consensus         3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~d~~   37 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINRDDY   37 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---hCCCCEEechHHH
Confidence            4778999999999999997643   2346777766544

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.15  E-value=0.0047  Score=53.39  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +++|+|+.|+||||+++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.11  E-value=0.0044  Score=53.04  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|.|+.|+||||+.+.|+..+
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.11  E-value=0.0043  Score=53.98  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      ++||-|+.||||||+.+.|.-.+..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            7899999999999999999865543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0042  Score=55.84  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=27.2

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      -.++.++||+|+|||||+-=|+-.+.-..-+|.+-..|
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D   46 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD   46 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence            36899999999999999877776555333355554444

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.05  E-value=0.0037  Score=54.12  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +||+|..|+|||||++.|+|.-
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999853

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.0052  Score=51.32  Aligned_cols=23  Identities=39%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .+.|.|++||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999997654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.0072  Score=50.39  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=19.2

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++|+|+.|+|||||++.|++-
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999984

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.85  E-value=0.0049  Score=52.84  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|+|..|||||||++.|+|-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36799999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.83  E-value=0.0062  Score=54.54  Aligned_cols=26  Identities=38%  Similarity=0.482  Sum_probs=21.7

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ..++.|+||||+|||||+-=|+..+.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45889999999999999888876554

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0044  Score=53.91  Aligned_cols=26  Identities=35%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +|-++-|.|+.||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57788899999999999999997644

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.73  E-value=0.0063  Score=51.55  Aligned_cols=21  Identities=38%  Similarity=0.377  Sum_probs=18.2

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.|.|+.||||||+.+.|+--
T Consensus         7 I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999643

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.72  E-value=0.007  Score=51.12  Aligned_cols=32  Identities=38%  Similarity=0.533  Sum_probs=25.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~  483 (510)
                      ++.|.|+.||||||+.+.|+..+.   +..+++|.
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d   35 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD   35 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CCEEEehH
Confidence            678999999999999999987653   44555553

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.67  E-value=0.0063  Score=58.36  Aligned_cols=41  Identities=27%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      ...++.+..+.+.|+.||||||+++.|.+.++|..=-+.|.
T Consensus       160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE  200 (323)
T d1g6oa_         160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE  200 (323)
T ss_dssp             HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             HHHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence            34456667788999999999999999999999876666663

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.66  E-value=0.0072  Score=52.88  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=21.4

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCC
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +..++.|+||.||||||+.+.|+--
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999999753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.007  Score=52.93  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.|+||+||||||+++.|....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5699999999999999986543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.59  E-value=0.0068  Score=52.58  Aligned_cols=21  Identities=38%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++|+|+..||||||++.|+|.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            799999999999999999974

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.011  Score=54.02  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=24.7

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      +=+|++++ +.+.+..|.|||.+||||.+|.++
T Consensus        31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            44566555 334788899999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.0067  Score=53.42  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .++|+|+.|||||||++-|+|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.0092  Score=50.22  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      -++++|+.|+|||||++.|+|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.0075  Score=52.51  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             cEEEEecCCCCchhHHHHHHcC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G  469 (510)
                      ..+.|+||+|+||||+++-|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.37  E-value=0.0071  Score=53.07  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=27.0

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      ++++.++.|+||.||||||..+.|+-.+    |-.+|+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is   38 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS   38 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence            3567789999999999999999997643    555555

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.0064  Score=52.25  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      -++|+|+.++|||||+|.|+|.-
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0091  Score=53.07  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++||-|+.||||||+.+.|.-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999886554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.32  E-value=0.013  Score=49.64  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EEEecCCCCchhHHHHHHcCCcc
Q 010435          450 FCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++++|+.|+|||||++.|+|...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~~   27 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGEDV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCCC
Confidence            67999999999999999999553

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.18  E-value=0.0098  Score=52.21  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=18.2

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.|+||+|+||||+++.|.-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            569999999999999998543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.06  E-value=0.011  Score=50.31  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      +.|+|+.||||||+-+.|+..+    |--+++
T Consensus         3 I~liG~~GsGKsTi~k~La~~l----~~~~~d   30 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL----DLVFLD   30 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHh----CCCEEe
Confidence            5688999999999999998765    555555

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.02  E-value=0.0097  Score=53.82  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++|++||..||||||++.|++.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5899999999999999999875

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.94  E-value=0.015  Score=52.52  Aligned_cols=28  Identities=32%  Similarity=0.431  Sum_probs=22.3

Q ss_pred             eeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      +|++++   +++..|.|||.+||||++|.+.
T Consensus        29 Ndi~~~---~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          29 NDLEMA---HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEES---SCEEEEESCSSSSHHHHHHHHH
T ss_pred             ceEEeC---CcEEEEECCCccccchhhhhhH
Confidence            455553   4689999999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.93  E-value=0.012  Score=50.58  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++.|.|+.||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            567889999999999999987654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.91  E-value=0.011  Score=50.65  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=18.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .+.|+|+.||||||+-+.|+-.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.82  E-value=0.0095  Score=51.92  Aligned_cols=33  Identities=39%  Similarity=0.522  Sum_probs=25.1

Q ss_pred             CCcEEEEecCCCCchhHHHHHHc---CCccCCcceE
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDA  478 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i  478 (510)
                      +|=-+.|+||.||||||..+.|+   |+...+.|++
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdl   37 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM   37 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence            45556799999999999999999   5555444443

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.014  Score=50.99  Aligned_cols=30  Identities=27%  Similarity=0.233  Sum_probs=24.9

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      .++.|+||.||||||..+.|+..+    |-.+|+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~----g~~~is   38 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS   38 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence            478899999999999999998755    555555

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.71  E-value=0.0047  Score=52.10  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=19.6

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++|+|+.|+||||+++.|+|.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999885

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.67  E-value=0.013  Score=54.10  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=20.0

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++|+|.+|+|||||+|.|.|.-
T Consensus        35 I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6799999999999999999853

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.66  E-value=0.012  Score=49.04  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.|+|+.|+||||+++.+++-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5699999999999999987543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.016  Score=51.72  Aligned_cols=28  Identities=29%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++|-+++|-|+-||||||+.+.|..-+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999877553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.56  E-value=0.016  Score=50.91  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +|++||-.||||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            6899999999999999999843

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.48  E-value=0.013  Score=49.08  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++|+|..|+|||||++-+++-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999887653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.011  Score=56.62  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      -++||.|+.|||||||++-|+..+.
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999985443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.30  E-value=0.018  Score=48.97  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=18.7

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.|+|+.||||||+-+.|+-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999997654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.019  Score=49.98  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++.|+||.||||||..+.|+--
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.023  Score=49.31  Aligned_cols=27  Identities=22%  Similarity=0.261  Sum_probs=23.9

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      .+++|+++-|.|++|+||||+.--++.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999999999876654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.23  E-value=0.019  Score=49.99  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++||.|..||||||..+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.22  E-value=0.015  Score=50.55  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=18.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .+.|.||.||||||+.+.|+--
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3569999999999999999643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.13  E-value=0.024  Score=48.85  Aligned_cols=38  Identities=21%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      ++.+++.+.|+.||||||+.+-+.-    ..|.+.|+..++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~----~~~~~~i~~D~~~   49 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV----SAGYVHVNRDTLG   49 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG----GGTCEEEEHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH----hcCCEEEchHHHH
Confidence            4457899999999999999988753    3567788776654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.06  E-value=0.018  Score=52.67  Aligned_cols=34  Identities=32%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      .+-|.||.|+||||+.+.|++.+.  .+-+.+++-+
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~   67 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDT   67 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh--cceEEEecHH
Confidence            467999999999999999999775  3456666533

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.035  Score=47.10  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             EEEecCCCCchhHHHHHHcC-----CccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-----~~~pt~G~i  478 (510)
                      ++++|..|+||||+++-+++     .+.||-|..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~   38 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT   38 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccCcceeec
Confidence            57999999999999987765     345666643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.02  E-value=0.017  Score=50.97  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++|+|+.|+|||||++.|++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            468999999999999999976

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.97  E-value=0.022  Score=49.61  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      =+++|-|.-||||||+++.|...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999998765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.95  E-value=0.019  Score=48.94  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=18.2

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++.+++
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            67999999999999998875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.75  E-value=0.025  Score=49.46  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++.++|..|+||||+.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999998544

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.74  E-value=0.026  Score=48.32  Aligned_cols=29  Identities=38%  Similarity=0.617  Sum_probs=22.3

Q ss_pred             EEEecCCCCchhHHHHHH---cCCccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCL---TGITPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l---~G~~~pt~G~i  478 (510)
                      +.|+|+.||||||..+.|   -|+...+.|++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~l   34 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDM   34 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceechhHH
Confidence            569999999999999999   45554454543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.66  E-value=0.024  Score=48.16  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .+.++|..|||||||++-|.|-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3679999999999999999985

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.046  Score=46.39  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=23.1

Q ss_pred             EEEecCCCCchhHHHHHHcC-----CccCCcceEE
Q 010435          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGDAL  479 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-----~~~pt~G~i~  479 (510)
                      +.|+|..|+|||||++-+++     .+.||.|...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~   42 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY   42 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence            68999999999999987643     3356766554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.53  E-value=0.022  Score=48.17  Aligned_cols=20  Identities=30%  Similarity=0.497  Sum_probs=17.5

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|+.|+||||+++.+++
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            57999999999999997754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.49  E-value=0.029  Score=48.29  Aligned_cols=29  Identities=31%  Similarity=0.500  Sum_probs=21.9

Q ss_pred             EEEecCCCCchhHHHHHHcC---CccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTG---ITPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G---~~~pt~G~i  478 (510)
                      +.|+|+.||||||..+.|+-   +..-+.|++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~is~gdl   34 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPHISTGDM   34 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceeeHHHH
Confidence            56999999999999999874   434444543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.018  Score=54.66  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc-----CCcceEEEcCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP-----VTGGDALIYGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~i~g~~  484 (510)
                      ++||-|+.||||||+.+.|..++.     +.-.-+..||.-
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            889999999999999999987764     222334556653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.029  Score=49.51  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=24.0

Q ss_pred             EEEEecCCCCchhHHHHHHcC---CccCCcceE
Q 010435          449 LFCLLGPNGAGKTTTISCLTG---ITPVTGGDA  478 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G---~~~pt~G~i  478 (510)
                      |++|.||.||||||.-+.|+-   +..-++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            789999999999999999974   444455555

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.026  Score=50.62  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ++..++|-|+-||||||+++.|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356789999999999999999998663

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.032  Score=49.29  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=22.7

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +|..+++-|+-||||||.++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999988543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.30  E-value=0.034  Score=51.50  Aligned_cols=23  Identities=43%  Similarity=0.638  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhHHHHHH---cCCc
Q 010435          449 LFCLLGPNGAGKTTTISCL---TGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l---~G~~  471 (510)
                      .++++||-|+|||||...|   +|..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~   29 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAK   29 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCc
Confidence            5789999999999999988   6654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.18  E-value=0.018  Score=53.17  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.||++.-.+.+||++.|.|++|+||||++.-++-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            47888877899999999999999999999777664

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.05  E-value=0.038  Score=49.11  Aligned_cols=42  Identities=21%  Similarity=0.119  Sum_probs=31.6

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCC--cceEEEcCeecC
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFSIR  486 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt--~G~i~i~g~~i~  486 (510)
                      ++|-++=|.|.+||||||+.+.|.-.+...  .-.+.++|.+++
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            567889999999999999999987544222  235678887664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.94  E-value=0.037  Score=48.80  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++||.|..||||||..+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999863

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.035  Score=47.53  Aligned_cols=20  Identities=35%  Similarity=0.404  Sum_probs=17.4

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.|+||.||||||..+.|+-
T Consensus         3 I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46899999999999998853

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.84  E-value=0.038  Score=48.93  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++|-||.||||||..+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999998644

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=91.81  E-value=0.037  Score=47.08  Aligned_cols=21  Identities=43%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|+.|+||||+++.+.+-
T Consensus        19 I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999774

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.81  E-value=0.033  Score=54.71  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=20.2

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|..|+||||++|.|.|.-
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999999843

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.76  E-value=0.037  Score=47.52  Aligned_cols=30  Identities=43%  Similarity=0.713  Sum_probs=23.4

Q ss_pred             EEEecCCCCchhHHHHHHc---CCccCCcceEE
Q 010435          450 FCLLGPNGAGKTTTISCLT---GITPVTGGDAL  479 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~  479 (510)
                      +.|+|+.||||||..+.|+   |+...+.|++.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~   35 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELF   35 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceEchHHHH
Confidence            5689999999999999985   56555556554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.76  E-value=0.04  Score=49.06  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=26.2

Q ss_pred             CCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (510)
Q Consensus       446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i  478 (510)
                      +|-.+++-|+-||||||+.+.|.-.+.. .|.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~   33 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   33 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence            6889999999999999999999866653 3443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.74  E-value=0.078  Score=45.74  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=26.8

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      ..++.-.+.+ .|.-+.+.|++|+||||+.-.|.
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            4567767777 78888999999999999986654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.70  E-value=0.033  Score=49.83  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=23.0

Q ss_pred             EEEEecCCCCchhHHHHHH-cCCccCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCL-TGITPVTGG  476 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l-~G~~~pt~G  476 (510)
                      -+.|||..|+||||+++-+ .+...||-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            3579999999999999876 566678877

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.69  E-value=0.046  Score=48.16  Aligned_cols=24  Identities=33%  Similarity=0.446  Sum_probs=21.1

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      .+|++||-.||||||++.|+|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            378999999999999999998543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.54  E-value=0.033  Score=47.27  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=17.9

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++-+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            67999999999999997753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=91.47  E-value=0.041  Score=47.97  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .+.|+|+.||||||..+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999998643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.053  Score=45.70  Aligned_cols=30  Identities=17%  Similarity=0.138  Sum_probs=22.6

Q ss_pred             EEEEecCCCCchhHHHHHHcC-----CccCCcceE
Q 010435          449 LFCLLGPNGAGKTTTISCLTG-----ITPVTGGDA  478 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G-----~~~pt~G~i  478 (510)
                      -++|+|..|+||||+++.+++     .+.||.|..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~   40 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT   40 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCcceecc
Confidence            367999999999999998753     234565543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.041  Score=46.47  Aligned_cols=29  Identities=24%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             EEEecCCCCchhHHHHHHcCC-----ccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~-----~~pt~G~i  478 (510)
                      ++++|..|+||||+++.+++-     ++|+.|.-
T Consensus         6 i~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~   39 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS   39 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccCCcccee
Confidence            689999999999999988653     34555533

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.37  E-value=0.041  Score=49.15  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +-|.||+|+||||+.++++..+
T Consensus        48 lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            5699999999999999998765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.37  E-value=0.046  Score=48.37  Aligned_cols=19  Identities=37%  Similarity=0.408  Sum_probs=18.0

Q ss_pred             EEEecCCCCchhHHHHHHc
Q 010435          450 FCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~  468 (510)
                      +|++||-+||||||++.|+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7899999999999999996

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.31  E-value=0.053  Score=45.95  Aligned_cols=28  Identities=32%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      .++|.++.|-|+=||||||+.+.++.-+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            4578999999999999999998876433

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.044  Score=46.73  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=17.8

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999997654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.048  Score=48.18  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++||.|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999863

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.11  E-value=0.037  Score=47.48  Aligned_cols=22  Identities=41%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|..|+||||+++-+.+-.
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~~   41 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIGE   41 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCSE
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5699999999999999987644

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.11  E-value=0.05  Score=51.76  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.7

Q ss_pred             cEEEEecCCCCchhHHHHHHcCC
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      -++||.|+.|||||||+.-|...
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHH
Confidence            47899999999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=0.055  Score=48.82  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=25.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      .+.|-||+|+||||+.+.|+....-+  -..+++.+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~~   88 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDV   88 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhh--hhccccccc
Confidence            46699999999999999999876422  234555444

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.074  Score=45.15  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=20.2

Q ss_pred             EEEecCCCCchhHHHHHHcC-C----ccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTG-I----TPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-~----~~pt~G~i  478 (510)
                      ++++|..|+||||+++.+++ -    +.+|.|..
T Consensus         9 I~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~   42 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE   42 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCC----CCSEE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccccceeee
Confidence            67999999999999987654 2    44555544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.07  E-value=0.081  Score=44.62  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=21.3

Q ss_pred             EEEecCCCCchhHHHHHHcC-C----ccCCcc
Q 010435          450 FCLLGPNGAGKTTTISCLTG-I----TPVTGG  476 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-~----~~pt~G  476 (510)
                      ++++|..|+|||||++-+.+ .    +.||.|
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~   37 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG   37 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence            57999999999999997654 3    356666

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.99  E-value=0.062  Score=47.75  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=23.4

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .+++|+++-|.|+.|+||||+..-++
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            58999999999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.97  E-value=0.036  Score=51.83  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=23.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCee
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFS  484 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~  484 (510)
                      ++|+-|++||||||+.+.|.-.+....- .+.|.+-+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Ds   42 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA   42 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence            7899999999999999988777654322 24554433

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.054  Score=46.58  Aligned_cols=21  Identities=38%  Similarity=0.444  Sum_probs=18.6

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.++|+.|+||||+++-+++-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999988763

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.80  E-value=0.052  Score=46.58  Aligned_cols=29  Identities=34%  Similarity=0.422  Sum_probs=21.9

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g  482 (510)
                      +.|+|+.||||||..+.|+--+    |-..|..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~----g~~~i~~   33 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF----HAAHLAT   33 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence            4588999999999999997543    4444443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.75  E-value=0.05  Score=53.42  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=25.9

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      .++-++-+.||.|+|||||+..+..........
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence            455678899999999999999988866544344

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.70  E-value=0.057  Score=48.45  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=21.6

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHH
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISC  466 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~  466 (510)
                      .+++|+++-|.|+.|+||||+.--
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq   55 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHT   55 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHH
Confidence            489999999999999999998653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.059  Score=45.58  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.4

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|..|+||||+++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            5799999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.44  E-value=0.055  Score=45.57  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.1

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|..|+||||+++.+++-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999977653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.41  E-value=0.062  Score=45.15  Aligned_cols=19  Identities=21%  Similarity=0.450  Sum_probs=17.0

Q ss_pred             EEEecCCCCchhHHHHHHc
Q 010435          450 FCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~  468 (510)
                      ++++|..|+||||+++-++
T Consensus         5 v~liG~~~vGKSsLi~rl~   23 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYC   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            5799999999999998666

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.40  E-value=0.06  Score=50.21  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=28.0

Q ss_pred             EEEeCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      +.+-+||..+|.|+.|+||||++.+|+.-...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            57889999999999999999999999875543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.30  E-value=0.09  Score=44.24  Aligned_cols=20  Identities=35%  Similarity=0.718  Sum_probs=17.9

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++|+|..|+||||+++-+.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.11  Score=43.85  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=22.4

Q ss_pred             EEEecCCCCchhHHHHHHcC-----CccCCcce
Q 010435          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGD  477 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-----~~~pt~G~  477 (510)
                      +.++|..|+||||+++-+.+     .+.||-|.
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~   37 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES   37 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccCCceec
Confidence            57999999999999998874     44666554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.19  E-value=0.068  Score=45.75  Aligned_cols=30  Identities=27%  Similarity=0.331  Sum_probs=25.7

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCCcceEE
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~  479 (510)
                      +.|||..|+||||+++-+.....||.|...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~~   34 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVE   34 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCccEEE
Confidence            579999999999999999887778887543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.01  E-value=0.098  Score=44.23  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=22.1

Q ss_pred             EEEecCCCCchhHHHHHHcC-----CccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-----~~~pt~G~i  478 (510)
                      +.++|..|+||||+++-+.+     .+.||.|.-
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~   40 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS   40 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccCcceeec
Confidence            56899999999999997764     345665543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.00  E-value=0.051  Score=46.15  Aligned_cols=24  Identities=38%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             EEEecCCCCchhHHHHHHcCCccC
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      +.++|..|+||||+++.+++-..+
T Consensus        15 IvlvG~~~vGKTSli~rl~~~~~~   38 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLGQSV   38 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCCCCE
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCC
Confidence            569999999999999999865543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.1  Score=44.58  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=17.9

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|..|+||||+++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999996654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.86  E-value=0.085  Score=46.45  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=24.6

Q ss_pred             eeeeeeE-EEeCCcEEEEecCCCCchhHHHH
Q 010435          436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTIS  465 (510)
Q Consensus       436 av~~lsl-~v~~gei~~llG~nGaGKsTl~~  465 (510)
                      .||++-- .+++|+++-|.|++|+||||+.-
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~   44 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSI   44 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHH
Confidence            4555443 58999999999999999999974

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.84  E-value=0.12  Score=43.56  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=22.4

Q ss_pred             EEEecCCCCchhHHHHHHcC-----CccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-----~~~pt~G~i  478 (510)
                      +.++|..|+||||+++-+++     .+.||.|..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~   40 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS   40 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccCCccccc
Confidence            67999999999999998653     345666643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=0.07  Score=45.15  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=18.1

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.|+|..|+||||+++.+++
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.13  Score=47.74  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++++|+-++|||||+|.|.|..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            78899999999999999999865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.69  E-value=0.077  Score=47.87  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=20.7

Q ss_pred             CcEEEEecCCCCchhHHHHHHcCCc
Q 010435          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       447 gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++.|.|+.|+||||+++.++...
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            4578899999999999999876543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.09  Score=44.61  Aligned_cols=22  Identities=32%  Similarity=0.665  Sum_probs=19.4

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.++|..|+|||||++.+++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            5799999999999999998743

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.65  E-value=0.089  Score=46.62  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             EeCCcEEEEecCCCCchhHHHHHHc
Q 010435          444 IAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       444 v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      +++|+++-|.|+.|+||||+.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999976664

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.64  E-value=0.061  Score=46.15  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=17.5

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++.+++
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999987663

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.08  Score=44.52  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=17.6

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++|+|..|+||||+++-+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.61  E-value=0.091  Score=46.92  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             eeeeeeE-EEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       436 av~~lsl-~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .||.+=- .+++|+++.|.|++|+||||+..-++--
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4555533 3899999999999999999998666544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.54  E-value=0.074  Score=49.35  Aligned_cols=29  Identities=31%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhHHHHHH---cCCccCCcceE
Q 010435          449 LFCLLGPNGAGKTTTISCL---TGITPVTGGDA  478 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l---~G~~~pt~G~i  478 (510)
                      .++|+||.|||||||...|   +|.... .|++
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v   39 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV   39 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcccc-ccce
Confidence            5789999999999999988   565543 3444

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.064  Score=45.55  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=18.0

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.++|..|+||||+++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            579999999999999986543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.38  E-value=0.074  Score=50.12  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      ..+.|+||.|+|||.+.+.|+....  .--+.+++-++
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~   85 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF   85 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred             ceEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence            4567999999999999999998753  22455555443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.35  E-value=0.089  Score=45.83  Aligned_cols=23  Identities=39%  Similarity=0.608  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999998654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.33  E-value=0.074  Score=47.59  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=17.4

Q ss_pred             EEEecCCCCchhHHHHHHc
Q 010435          450 FCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~  468 (510)
                      +|++||-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999999883

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.086  Score=44.30  Aligned_cols=29  Identities=24%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             EEEecCCCCchhHHHHHHcCC-----ccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~-----~~pt~G~i  478 (510)
                      ++++|..|+||||+++-+++-     +.|+-|+.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~   39 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF   39 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccCCceeee
Confidence            679999999999999888653     34555543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.23  E-value=0.081  Score=47.03  Aligned_cols=22  Identities=45%  Similarity=0.647  Sum_probs=19.3

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +.|-||+|+||||+.+.++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            4688999999999999998754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.19  E-value=0.069  Score=46.87  Aligned_cols=21  Identities=33%  Similarity=0.397  Sum_probs=19.2

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +|++||-++|||||.+.|++.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999999864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.085  Score=44.15  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.1

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++.+++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999998874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.094  Score=44.63  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=18.1

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++-+++
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.92  E-value=0.096  Score=43.78  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.8

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.++|..|+||||+++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.073  Score=45.14  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=17.6

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++++|..|+||||+++-+++-
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999987654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.85  E-value=0.13  Score=43.90  Aligned_cols=32  Identities=16%  Similarity=0.151  Sum_probs=22.6

Q ss_pred             EEEecCCCCchhHHHHHH-cCC----ccCCcceEEEc
Q 010435          450 FCLLGPNGAGKTTTISCL-TGI----TPVTGGDALIY  481 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l-~G~----~~pt~G~i~i~  481 (510)
                      +.++|..|+||||+++-+ .|-    +.||-|.....
T Consensus         5 ivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~   41 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA   41 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccc
Confidence            579999999999999755 443    35665654433

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.80  E-value=0.088  Score=45.63  Aligned_cols=20  Identities=25%  Similarity=0.537  Sum_probs=17.9

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++.+++
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            67999999999999997764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.1  Score=46.51  Aligned_cols=26  Identities=23%  Similarity=0.185  Sum_probs=23.3

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .+++|+++.|.|++|+||||+.--++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999999976664

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=0.079  Score=44.60  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             EEEecCCCCchhHHHHHHcC-----CccCCcc
Q 010435          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGG  476 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-----~~~pt~G  476 (510)
                      +.|+|..|+||||+++.+.+     .+.||.|
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~   37 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLG   37 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence            47999999999999997753     3455555

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.13  Score=43.40  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=17.8

Q ss_pred             EEEecCCCCchhHHHHHH-cCC
Q 010435          450 FCLLGPNGAGKTTTISCL-TGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l-~G~  470 (510)
                      ++++|+.|+||||+++-+ .|.
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~   30 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGA   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            689999999999999955 543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.63  E-value=0.11  Score=46.81  Aligned_cols=29  Identities=31%  Similarity=0.282  Sum_probs=23.9

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G  476 (510)
                      ..+.|.||.|.||||+.+.++..+....+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            46779999999999999999987755444

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.58  E-value=0.1  Score=48.54  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.4

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++||-|+.||||||+.+.|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            889999999999999887643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.076  Score=44.99  Aligned_cols=20  Identities=25%  Similarity=0.551  Sum_probs=17.9

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      ++++|..|+||||+++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997763

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.47  E-value=0.092  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=19.4

Q ss_pred             EEEecCCCCchhHHHHHHcCCcc
Q 010435          450 FCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      +||+|-.-+|||||+|.|||.-.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~~   25 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVDV   25 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC---
T ss_pred             EeEECCCCCCHHHHHHHHHCCCC
Confidence            69999999999999999999643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=88.41  E-value=0.085  Score=47.13  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=27.0

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~  486 (510)
                      +-+-||.|+||||+.++|+..+...  .+.++|.+..
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~--~~~~~~~~~~   72 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLV   72 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCC--cccccCcccc
Confidence            4588999999999999999877654  3455666653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.11  Score=44.17  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=18.0

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +.++|..|+||||+++.+++-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999887653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.95  E-value=0.095  Score=46.46  Aligned_cols=37  Identities=27%  Similarity=0.314  Sum_probs=26.3

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecC
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR  486 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~  486 (510)
                      +-|-||.|+||||+.++++..+...   ...+.++..+.+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~   78 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR   78 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred             EEEECCCCCCchhhHHHHHHHHhccccccccccccccccC
Confidence            3588999999999999987654332   245666665543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=87.70  E-value=0.17  Score=46.66  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .+||+|-.-+||||+++.||+-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999954

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.61  E-value=0.14  Score=45.77  Aligned_cols=24  Identities=29%  Similarity=0.307  Sum_probs=19.3

Q ss_pred             EEEecCCCCchhHHHHHH---cCCccC
Q 010435          450 FCLLGPNGAGKTTTISCL---TGITPV  473 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l---~G~~~p  473 (510)
                      ++++||-.+|||||++.|   +|...+
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~g~i~~   38 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDSKMIYE   38 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCcch
Confidence            688999999999999999   555543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.47  E-value=0.09  Score=44.55  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=8.3

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.++|..|+||||+++-+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999986665

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.12  Score=43.77  Aligned_cols=20  Identities=20%  Similarity=0.400  Sum_probs=17.6

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.++|..|+|||||++-+++
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.36  E-value=0.13  Score=44.15  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             EEEecCCCCchhHHHHHHcC--CccCCcc
Q 010435          450 FCLLGPNGAGKTTTISCLTG--ITPVTGG  476 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G--~~~pt~G  476 (510)
                      +.|||..|+||||+++.+.-  ...||-|
T Consensus         5 ivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            57999999999999998842  2357888

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.14  E-value=0.14  Score=43.03  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=17.3

Q ss_pred             EEEecCCCCchhHHHHHHc
Q 010435          450 FCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~  468 (510)
                      +.++|..|+|||||++-+.
T Consensus         9 i~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            5799999999999998877

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.06  E-value=0.099  Score=48.84  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=20.0

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      +||+|-..+||||+++.||+-
T Consensus        13 iGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999975

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=86.96  E-value=0.16  Score=46.36  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=27.3

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      ..+-|.||.|+|||++.+.|+.....  --+.+++.++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~--~~~~i~~~~l   81 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDF   81 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSS
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCC--CEEEEEhHHh
Confidence            34568899999999999999986642  2466666555

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=86.92  E-value=0.11  Score=46.33  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             EEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435          451 CLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (510)
Q Consensus       451 ~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i  485 (510)
                      -|-||.|.||||+.+.+++...-.  ....++.+.
T Consensus        39 Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~   71 (239)
T d1ixsb2          39 LLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAI   71 (239)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTC
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCC--eEeccCCcc
Confidence            488999999999999999865432  355555554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.76  E-value=0.13  Score=47.50  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce-EEEcCee
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYGFS  484 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~-i~i~g~~  484 (510)
                      .++.|.++-+-||+|+||||+.-.++.......|. |+|+...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            78999999999999999999976666554444454 6788765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.63  E-value=0.16  Score=45.34  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.3

Q ss_pred             cEEEEecCCCCchhHHHHHHc
Q 010435          448 QLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~  468 (510)
                      .++||.|.-||||||..++|.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999995

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.16  Score=43.40  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.0

Q ss_pred             EEEEecCCCCchhHHHHHHcC
Q 010435          449 LFCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G  469 (510)
                      .++++|..|+||||+++-+++
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.14  Score=43.82  Aligned_cols=20  Identities=20%  Similarity=0.380  Sum_probs=17.6

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.|+|..|+||||+++.++.
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999987653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.46  E-value=0.15  Score=47.14  Aligned_cols=34  Identities=29%  Similarity=0.273  Sum_probs=27.9

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~  470 (510)
                      |+|. =+.+-+||..+|.|+.|+||||++..++.-
T Consensus        58 aID~-l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          58 VVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHHH-HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eeee-eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            4443 368899999999999999999998877644

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.25  E-value=0.15  Score=45.71  Aligned_cols=21  Identities=43%  Similarity=0.635  Sum_probs=18.5

Q ss_pred             EEEecCCCCchhHHHHHHcCC
Q 010435          450 FCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~  470 (510)
                      .-|.||.|+||||+.+.++..
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            469999999999999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.26  Score=42.27  Aligned_cols=29  Identities=24%  Similarity=0.157  Sum_probs=21.3

Q ss_pred             EEEecCCCCchhHHHHHHcC-C----ccCCcceE
Q 010435          450 FCLLGPNGAGKTTTISCLTG-I----TPVTGGDA  478 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G-~----~~pt~G~i  478 (510)
                      ++|+|..|+||||+++-+.+ -    +.||-|..
T Consensus         6 vvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~   39 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN   39 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee
Confidence            67999999999999977643 3    34555543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.75  E-value=0.15  Score=46.26  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             EEEecCCCCchhHHHHHH---cCCcc
Q 010435          450 FCLLGPNGAGKTTTISCL---TGITP  472 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l---~G~~~  472 (510)
                      ++++||-++|||||+..|   +|...
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~~g~i~   52 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFLTGMVD   52 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHHTTSSC
T ss_pred             EEEEeeCCCCHHHHHHHHHHHcCCcc
Confidence            689999999999999988   66543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.74  E-value=0.15  Score=45.12  Aligned_cols=22  Identities=41%  Similarity=0.653  Sum_probs=19.1

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +-|-||.|+||||+.++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            3588999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.70  E-value=0.13  Score=46.49  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=19.3

Q ss_pred             EEEEecCCCCchhHHHHHHcCCc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++.+.||.|.||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.57  E-value=0.19  Score=42.10  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=17.6

Q ss_pred             EEEecCCCCchhHHHHHHcC
Q 010435          450 FCLLGPNGAGKTTTISCLTG  469 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G  469 (510)
                      +.++|..|+||||+++-+++
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            57999999999999998754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.51  E-value=0.2  Score=46.65  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=21.7

Q ss_pred             EEEecCCCCchhHHHHHHcCCcc-CC
Q 010435          450 FCLLGPNGAGKTTTISCLTGITP-VT  474 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~-pt  474 (510)
                      ++++|.-.|||||+++.|+|.-- |+
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            57999999999999999999663 54

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.18  E-value=0.22  Score=46.11  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=20.3

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++++|+-.|||||+++.|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            6799999999999999999965

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.00  E-value=0.36  Score=41.32  Aligned_cols=32  Identities=28%  Similarity=0.406  Sum_probs=23.2

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~  468 (510)
                      .++.-.+.+ .|.-+.+.|++|+||||+.-.|.
T Consensus         4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            455555543 56677899999999999876544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=84.49  E-value=0.29  Score=44.83  Aligned_cols=43  Identities=19%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCc-cCCcceEEEcCeec
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT-PVTGGDALIYGFSI  485 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~-~pt~G~i~i~g~~i  485 (510)
                      .+++|+++-+-||+|+||||+.-.++... .+..--++|+...-
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~   93 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA   93 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccc
Confidence            78999999999999999999976665544 44444578887653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.36  E-value=0.37  Score=40.93  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=23.2

Q ss_pred             ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l  467 (510)
                      +.++...+ .-.|.-+.+.|++|+||||+.-.|
T Consensus         4 t~~H~~~v-~~~g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2           4 TSLHGVLV-DVYGVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EEEESEEE-EETTEEEEEEESTTSSHHHHHHHH
T ss_pred             eeEEEEEE-EECCEEEEEEeCCCCCHHHHHHHH
Confidence            34555444 346778889999999999887443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.34  E-value=0.13  Score=41.12  Aligned_cols=20  Identities=35%  Similarity=0.220  Sum_probs=17.3

Q ss_pred             eCCcEEEEecCCCCchhHHH
Q 010435          445 AKDQLFCLLGPNGAGKTTTI  464 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~  464 (510)
                      ++|+.+.|.+|.|||||+..
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            57899999999999999654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.10  E-value=0.21  Score=45.05  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             EEEEecCCCCchhHHHHHH---cCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCL---TGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l---~G~~~  472 (510)
                      .++++||-++|||||..-|   +|.+.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~g~i~   34 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKCGGID   34 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHSCSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHcCCcc
Confidence            3689999999999999888   55544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=84.02  E-value=0.25  Score=46.44  Aligned_cols=32  Identities=25%  Similarity=0.200  Sum_probs=24.9

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~  481 (510)
                      .++.++||+|.|||.+.+.|+-.+.  .--+.++
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d   84 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG--IELLRFD   84 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc--CCeeEec
Confidence            3578999999999999999998764  2344454

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.29  E-value=0.26  Score=43.80  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             cEEEEecCCCCchhHHHHHHcCCcc
Q 010435          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       448 ei~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      ..+++=|.-||||||+++.|.-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            3677889999999999999986543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=83.23  E-value=0.15  Score=48.25  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=21.8

Q ss_pred             EEEEecCCCCchhHHHHHHcCCccC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~p  473 (510)
                      -+-|.|+.|.||||+.+.+++++||
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            3468899999999999999998865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.13  E-value=0.26  Score=44.52  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             EEEecCCCCchhHHHHHHcCCc
Q 010435          450 FCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      +-|.||.|+|||++.+.|+...
T Consensus        43 vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhcc
Confidence            4588999999999999998764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.87  E-value=0.25  Score=43.91  Aligned_cols=22  Identities=36%  Similarity=0.359  Sum_probs=18.6

Q ss_pred             EEEEecCCCCchhHHHHHHcCC
Q 010435          449 LFCLLGPNGAGKTTTISCLTGI  470 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~  470 (510)
                      ++.|.|.=||||||+++-|...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            5678899999999999988663

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.64  E-value=0.22  Score=45.56  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhHHHHHHcCCcc
Q 010435          449 LFCLLGPNGAGKTTTISCLTGITP  472 (510)
Q Consensus       449 i~~llG~nGaGKsTl~~~l~G~~~  472 (510)
                      -+-|-||.|+|||++.+.+++...
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCcchhHHHHHHHHhC
Confidence            356999999999999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=0.36  Score=43.63  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l  467 (510)
                      ++++    +.+|+++.|.|+.|+||||++--|
T Consensus        22 li~G----~~pg~~~~i~G~~G~GKS~l~l~l   49 (274)
T d1nlfa_          22 VLPN----MVAGTVGALVSPGGAGKSMLALQL   49 (274)
T ss_dssp             EETT----EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HhCC----ccCCcEEEEEeCCCCCHHHHHHHH
Confidence            5555    346999999999999999997544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=82.12  E-value=0.2  Score=48.17  Aligned_cols=40  Identities=30%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCeec
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSI  485 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~~i  485 (510)
                      +++++.++.+.||.|+||||+.+.|++...   |.+ .+++-+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~  190 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD  190 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence            446778999999999999999999998764   333 3555544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.78  E-value=0.28  Score=45.00  Aligned_cols=42  Identities=26%  Similarity=0.392  Sum_probs=33.5

Q ss_pred             EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCee
Q 010435          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFS  484 (510)
Q Consensus       443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~  484 (510)
                      .++.|.++-+-|+.|+||||+.-.++....-..| -+||+...
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999998777776544334 57887764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.38  E-value=0.25  Score=45.55  Aligned_cols=41  Identities=17%  Similarity=0.105  Sum_probs=30.0

Q ss_pred             eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (510)
Q Consensus       436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~  477 (510)
                      ++|. =+.+-+||..+|.|+.|+|||+++..+.--..-+...
T Consensus        57 ~ID~-l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v   97 (276)
T d1fx0a3          57 AIDA-MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI   97 (276)
T ss_dssp             TTTT-TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred             EEec-cccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence            4443 3688999999999999999999987654443434433

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=81.38  E-value=0.35  Score=50.46  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++.|++.+.|.+|||||+..|++...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            466999999999999999999987654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.19  E-value=0.33  Score=41.28  Aligned_cols=27  Identities=37%  Similarity=0.428  Sum_probs=21.2

Q ss_pred             EEEecCCCCchhHHHHHHcCC---ccCCcc
Q 010435          450 FCLLGPNGAGKTTTISCLTGI---TPVTGG  476 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~---~~pt~G  476 (510)
                      +.+||..|+||||+++-+...   +.||-|
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            579999999999999988543   345555

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=80.57  E-value=0.37  Score=43.55  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=24.7

Q ss_pred             EEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~  484 (510)
                      +-|.||.|+|||++.+.|++...-  =-+.+++.+
T Consensus        45 iLl~GppGtGKT~la~aia~~~~~--~~~~i~~~~   77 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEARV--PFITASGSD   77 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEHHH
T ss_pred             EEEecCCCCChhHHHHHHHHHcCC--CEEEEEhHH
Confidence            469999999999999999986532  245555443

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.03  E-value=0.39  Score=50.33  Aligned_cols=27  Identities=30%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (510)
Q Consensus       445 ~~gei~~llG~nGaGKsTl~~~l~G~~  471 (510)
                      ++.|++.+.|.+|||||++.|++...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356999999999999999999987655

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.02  E-value=0.33  Score=46.14  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             EEEecCCCCchhHHHHHH---cCCcc
Q 010435          450 FCLLGPNGAGKTTTISCL---TGITP  472 (510)
Q Consensus       450 ~~llG~nGaGKsTl~~~l---~G~~~  472 (510)
                      +|++||-|+|||||+..|   +|.+.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            789999999999999999   46543