Citrus Sinensis ID: 010437

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
MENGESIRGPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSGAGALTCRKSRQCS
cccccccccccEEEccccccccccccEEccHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHHHHHHccccEEEEEEEcEEEEEccEEEEcccccccccccEEEEEEEccEEEEEEcEEEEEEEEEEEcccccccccccccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEEEEEcccccEEEcccccccccccccEEEEEccccccccccccccccccEEEEEccEEEccccEEEEcccccEEEEEccEEEccccccccccccccccccccccccEEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccEccEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccHHHcHcHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEcccccccccccHccccccccHHHHHHHHHcccccccccccccc
mengesirgpfcwstyqtdsaedththISSLSLSLSLLLFLSSFLFFLGCvwgvgkrekikennAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSkhavdnpdEIASMVEMStrnsterrklgyfscgtgnpiddcwrcdgnwhknRKRLAdcgigfgrnaiggrdgrfyvvtdprdddpvnpkpgtlrhaviqdkplwIVFKRDMVIQLKQELIVNSFKtidgrganvhianggcitIQFVTNVIIHGlhvhdckptgnamvrsspthygwrtvadgdaisifgsshiwidhnslshcadglvdAVMGSTAitisnnhmthhnevmllghsdsytrdKQMQVTIAYNHFGEGLiqrmprcrhgyfhvvnndythwemyaiggsanptinsqgnrynaplNAFAKEVTKRVDTAAsqwkgwnwrsegdlllngayftpsgagasaSYARASslgaksssmvgsitsgagaltcrksrqcs
mengesirgpfCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLAsvrneqdvsvsRKMKAESSMNSTMAAKAEVVAEALSKhavdnpdeIASMVEMstrnsterrklgyfscgtgnpiddCWRCDGNWHKNRKRLADCGIGfgrnaiggrdgrFYVVTdprdddpvnpkpgtlrhaviqdkplWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAasqwkgwnwrSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSItsgagaltcrksrqcs
MENGESIRGPFCWSTYQTDSAEDTHTHIsslslslslllflssflfflGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPsgagasasyarasslgaKSSSMVGSITSGAGALTCRKSRQCS
********GPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASV***********************************************************KLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTD************TLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTP******************************************
*****SI**PFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIA*********************GTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSGAGALTCRKSRQC*
MENGESIRGPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNE*********************KAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAG********************SITSGAGALTCRKSRQCS
******IRGPFCW***QTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSG***********S****************************
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENGESIRGPFCWSTYQTDSAEDTHTHISSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLMLFVGVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSGAGALTCRKSRQCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query510 2.2.26 [Sep-21-2011]
Q944R1470 Probable pectate lyase 15 yes no 0.811 0.880 0.780 0.0
Q940Q1431 Probable pectate lyase 1 no no 0.821 0.972 0.804 0.0
Q9M8Z8416 Probable pectate lyase 8 no no 0.760 0.932 0.829 0.0
Q9LJ42440 Probable pectate lyase 10 no no 0.758 0.879 0.801 0.0
Q9LRM5452 Probable pectate lyase 9 no no 0.845 0.953 0.697 0.0
Q93WF1417 Probable pectate lyase 20 no no 0.815 0.997 0.734 0.0
Q9SVQ6438 Putative pectate lyase 14 no no 0.843 0.981 0.727 1e-180
Q93Z25432 Probable pectate lyase 22 no no 0.754 0.891 0.715 1e-168
Q9FXD8408 Probable pectate lyase 5 no no 0.752 0.941 0.720 1e-166
Q9C5M8408 Probable pectate lyase 18 no no 0.766 0.958 0.719 1e-165
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function desciption
 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/441 (78%), Positives = 380/441 (86%), Gaps = 27/441 (6%)

Query: 96  DVSVSRKMKAE---SSMNSTMAAKAEVVAEALS-------------------KHAV-DNP 132
           ++S+SRK+K E   SS +STMAA  ++  E                      +HAV D+P
Sbjct: 30  EISLSRKLKTEVIQSSNSSTMAAIRKLKTEEFQSLNSSTMAATRLDGEPQQQQHAVADDP 89

Query: 133 D----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFG 188
           D    E+A +V+MS +N T RRKLG+FSCGTGNPIDDCWRCD NWHKNRKRLADCGIGFG
Sbjct: 90  DMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFG 149

Query: 189 RNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNS 248
           RNAIGGRDGRFY+VTDP D+D VNPKPGTLRHAVIQ++PLWIVFKRDMVI+LKQELI+NS
Sbjct: 150 RNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNS 209

Query: 249 FKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADG 308
           FKTID RG+NVHIANG CITIQF+TNVIIHGLH+HDCKPTGNAMVRSSP+H+GWRT+ADG
Sbjct: 210 FKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADG 269

Query: 309 DAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRD 368
           DA+SIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT+SNNH THHNEVMLLGHSDSYT+D
Sbjct: 270 DAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKD 329

Query: 369 KQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNA 428
           K MQVTIAYNHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA PTINSQGNRY A
Sbjct: 330 KLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAA 389

Query: 429 PLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSS 488
           P++ FAKEVTKRV+T AS+WK WNWRSEGDLLLNGA+F PSGAGASASY RASSL AK S
Sbjct: 390 PMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPS 449

Query: 489 SMVGSITSGAGALTCRKSRQC 509
           SMV +ITS AGAL CRK R C
Sbjct: 450 SMVDTITSTAGALGCRKGRPC 470

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|Q93WF1|PLY20_ARATH Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVQ6|PLY14_ARATH Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
224053451450 predicted protein [Populus trichocarpa] 0.870 0.986 0.826 0.0
224075595452 predicted protein [Populus trichocarpa] 0.866 0.977 0.818 0.0
170293773452 pectate lyase 1-27 [Populus tremula x Po 0.866 0.977 0.816 0.0
429326628452 pectate lyase [Populus tomentosa] 0.866 0.977 0.814 0.0
356575168448 PREDICTED: probable pectate lyase 15-lik 0.849 0.966 0.826 0.0
356534838450 PREDICTED: probable pectate lyase 15-lik 0.835 0.946 0.833 0.0
449529108444 PREDICTED: probable pectate lyase 15-lik 0.837 0.961 0.833 0.0
290782380445 pectase lyase [Prunus persica] 0.864 0.991 0.796 0.0
297741911430 unnamed protein product [Vitis vinifera] 0.843 1.0 0.826 0.0
449442407449 PREDICTED: probable pectate lyase 15-lik 0.829 0.942 0.836 0.0
>gi|224053451|ref|XP_002297822.1| predicted protein [Populus trichocarpa] gi|118488789|gb|ABK96205.1| unknown [Populus trichocarpa] gi|222845080|gb|EEE82627.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/450 (82%), Positives = 412/450 (91%), Gaps = 6/450 (1%)

Query: 66  MAVTQRGICLCFAVVLMLFVGVLASVR--NEQDVSVSRKM---KAESSMNSTMAAKAEVV 120
           MAV+++  C+  AV+L+LFVGV+ +    N    +++R +   K +SS N+TMAA+++  
Sbjct: 1   MAVSRKWACMFSAVLLLLFVGVMPTTSGTNGGISALTRSVETEKVQSSSNTTMAARSQEE 60

Query: 121 AEALSKHAV-DNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKR 179
           A+AL++ AV DNP+E+ SMVEMS RNSTERR+LGYFSCGTGNPIDDCWRCD NW KNRKR
Sbjct: 61  ADALNEKAVADNPEEVVSMVEMSIRNSTERRRLGYFSCGTGNPIDDCWRCDPNWQKNRKR 120

Query: 180 LADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQ 239
           LADCGIGFGRNAIGGRDGRFYVVTDP D+DPVNP+PGTLRHAVIQD PLWIVFKRDMVIQ
Sbjct: 121 LADCGIGFGRNAIGGRDGRFYVVTDPSDNDPVNPRPGTLRHAVIQDAPLWIVFKRDMVIQ 180

Query: 240 LKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTH 299
           LKQELI+NSFKTIDGRG NVHIANGGCITIQFVTNVIIHGLH+HDCKPTGNAMVRSSP+H
Sbjct: 181 LKQELIMNSFKTIDGRGVNVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSH 240

Query: 300 YGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLL 359
           YGWRT+ADGDA+SIFGSSHIW+DHNSLS+CADGLVDAVMGSTAIT+SNNH THHNEVMLL
Sbjct: 241 YGWRTMADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITVSNNHFTHHNEVMLL 300

Query: 360 GHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTI 419
           GHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSA PTI
Sbjct: 301 GHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTI 360

Query: 420 NSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYAR 479
           NSQGNRYNAP+N FAKEVTKRVDTAA  WK WNWRSEGDLLLNGAYFTPSGAGAS+SYAR
Sbjct: 361 NSQGNRYNAPVNPFAKEVTKRVDTAAGYWKNWNWRSEGDLLLNGAYFTPSGAGASSSYAR 420

Query: 480 ASSLGAKSSSMVGSITSGAGALTCRKSRQC 509
           ASSLGAKSSSMVG++T+ AGAL CR++RQC
Sbjct: 421 ASSLGAKSSSMVGAMTANAGALGCRRARQC 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224075595|ref|XP_002304700.1| predicted protein [Populus trichocarpa] gi|118488323|gb|ABK95980.1| unknown [Populus trichocarpa] gi|222842132|gb|EEE79679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|170293773|gb|ACB12931.1| pectate lyase 1-27 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|429326628|gb|AFZ78654.1| pectate lyase [Populus tomentosa] Back     alignment and taxonomy information
>gi|356575168|ref|XP_003555714.1| PREDICTED: probable pectate lyase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356534838|ref|XP_003535958.1| PREDICTED: probable pectate lyase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|449529108|ref|XP_004171543.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|290782380|gb|ADD62392.1| pectase lyase [Prunus persica] Back     alignment and taxonomy information
>gi|297741911|emb|CBI33346.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442407|ref|XP_004138973.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.756 0.895 0.851 4.3e-189
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.817 0.887 0.764 5.7e-189
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.760 0.932 0.793 1e-178
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.760 0.930 0.778 5.8e-176
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.829 0.961 0.716 2.1e-171
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.845 0.953 0.681 8.7e-166
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.747 0.933 0.701 7.7e-158
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.766 0.905 0.677 4.4e-155
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.743 0.928 0.695 3.1e-154
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.758 0.939 0.650 1.9e-147
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
 Identities = 332/390 (85%), Positives = 349/390 (89%)

Query:   125 SKHAVDNPDEIA----SMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRL 180
             ++HAV NPDE+A    ++ EMS RN TERRKLGYF+CGTGNPIDDCWRCD NWHKNRKRL
Sbjct:    41 NQHAVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRL 100

Query:   181 ADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQL 240
             ADCGIGFGRNAIGGRDGRFYVVTDPRDD+PVNP+PGTLRHAVIQD+PLWIVFKRDMVIQL
Sbjct:   101 ADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQL 160

Query:   241 KQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHY 300
             KQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVI+HGLH+HDCKPTGNAMVRSS TH+
Sbjct:   161 KQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCKPTGNAMVRSSETHF 220

Query:   301 GWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLG 360
             GWRT+ADGDAISIFGSSH+WIDHNSLSHCADGLVDAVMGSTAITISNNH+THHNEVMLLG
Sbjct:   221 GWRTMADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLG 280

Query:   361 HSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTIN 420
             HSDSY RDK MQVTIAYNHFG GLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTIN
Sbjct:   281 HSDSYMRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTIN 340

Query:   421 SQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXX 480
             SQGNRY AP N FAKEVTKRVDT AS WKGWNWRSEGDLL NGAYFT             
Sbjct:   341 SQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARA 400

Query:   481 XXXXXKSSSMVGSITSGAGALTCRKSRQCS 510
                  KSSS+VG ITS AGAL CR+ RQCS
Sbjct:   401 SSLSAKSSSLVGHITSDAGALPCRRGRQCS 430
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0042546 "cell wall biogenesis" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q944R1PLY15_ARATH4, ., 2, ., 2, ., 20.78000.81170.8808yesno
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.71420.73720.9376N/Ano
Q940Q1PLY1_ARATH4, ., 2, ., 2, ., 20.80450.82150.9721nono
Q93WF1PLY20_ARATH4, ., 2, ., 2, ., 20.73480.81560.9976nono
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.52140.84500.9599N/Ano
Q9SVQ6PLY14_ARATH4, ., 2, ., 2, ., 20.72700.84310.9817nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
smart00656190 smart00656, Amb_all, Amb_all domain 2e-83
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 7e-74
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 8e-28
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  256 bits (656), Expect = 2e-83
 Identities = 108/206 (52%), Positives = 129/206 (62%), Gaps = 28/206 (13%)

Query: 235 DMVIQLKQ--ELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAM 292
           D+ I L     +I+NS KTIDGRG+ V I  GG +TI+ V+NVII  L +HD KP     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKP----- 54

Query: 293 VRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCA---------DGLVDAVMGSTAI 343
                  YG     DGDAISI GSS++WIDH SLS C          DGL+D   GST +
Sbjct: 55  ------VYGS----DGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 344 TISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDY 403
           TISNN+  +H +VMLLGHSDS T D +M+VTIA+N+FG  L QR PR R GY HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 404 THWEMYAIGGSANPTINSQGNRYNAP 429
           T W  YAIGG    TI S+GN + AP
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 510
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.89
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.23
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.99
PLN02218431 polygalacturonase ADPG 97.97
PLN02155394 polygalacturonase 97.81
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.79
PLN02793443 Probable polygalacturonase 97.73
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.65
PLN03003456 Probable polygalacturonase At3g15720 97.63
PLN02218431 polygalacturonase ADPG 97.52
PLN03010409 polygalacturonase 97.51
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.5
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.49
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.42
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.42
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.41
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.33
PLN03003456 Probable polygalacturonase At3g15720 97.18
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.02
PLN02155394 polygalacturonase 96.97
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.82
PLN03010409 polygalacturonase 96.81
PLN02793443 Probable polygalacturonase 96.78
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.74
PLN02480343 Probable pectinesterase 96.72
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 96.51
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.41
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.22
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.0
PLN02197588 pectinesterase 95.9
smart00656190 Amb_all Amb_all domain. 95.33
PLN02176340 putative pectinesterase 94.41
PLN02432293 putative pectinesterase 94.28
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.22
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.16
PLN02304379 probable pectinesterase 93.86
PLN02773317 pectinesterase 93.72
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.71
PLN02916502 pectinesterase family protein 93.43
PLN02665366 pectinesterase family protein 93.38
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.27
PLN02682369 pectinesterase family protein 93.21
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.19
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.1
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.02
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.89
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.69
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.64
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.62
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.53
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.42
PLN02497331 probable pectinesterase 92.26
PLN02217670 probable pectinesterase/pectinesterase inhibitor 92.14
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 92.08
PLN02671359 pectinesterase 91.82
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 91.69
PLN02314586 pectinesterase 91.66
PLN02301548 pectinesterase/pectinesterase inhibitor 91.52
PLN02634359 probable pectinesterase 91.39
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 91.08
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.87
PLN02468565 putative pectinesterase/pectinesterase inhibitor 90.65
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 89.65
PRK10531422 acyl-CoA thioesterase; Provisional 88.04
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 87.72
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 86.44
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 84.37
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 81.18
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-55  Score=440.67  Aligned_cols=278  Identities=31%  Similarity=0.352  Sum_probs=226.6

Q ss_pred             ccccccc-------ccccCCCCeEEEEcCCCCCCCCCCCCchhhhhhcCCCCeEEEEeeeeEEEeC------ceEEecCC
Q 010437          183 CGIGFGR-------NAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLK------QELIVNSF  249 (510)
Q Consensus       183 ~A~GFG~-------~ttGGrgG~vy~VTnl~Ddd~vnp~pGTLR~Av~q~~Pr~IVF~~sg~I~L~------~~L~I~Sn  249 (510)
                      ..+||+.       +||||.+|.+++|++.+|          |..+++..+|.++|.-+.|+|.+.      .+|.+.||
T Consensus        33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sN  102 (345)
T COG3866          33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSN  102 (345)
T ss_pred             cccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccc
Confidence            3566665       689999999999999999          899999999995566667889887      56788999


Q ss_pred             eEEEeeCcceEEecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEe-eCCceEEEEeeeeeC
Q 010437          250 KTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISI-FGSSHIWIDHNSLSH  328 (510)
Q Consensus       250 kTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI-~gs~nVWIDHCSfS~  328 (510)
                      |||.|.|++++|. |++|+|+.+.|||||||+|++...++            |    ..|+|+| .+++|||||||+|+.
T Consensus       103 kTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~d------------~----~~D~Isi~~~~~nIWIDH~tf~~  165 (345)
T COG3866         103 KTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQGD------------P----NYDAISIYDDGHNIWIDHNTFSG  165 (345)
T ss_pred             cEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccCC------------C----CCCcEEeccCCeEEEEEeeEecc
Confidence            9999999999997 88999999999999999999864221            1    2699999 679999999999999


Q ss_pred             --------CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCc-cCCCcceEEEEEeeecCCCcCCCceeecceEEEE
Q 010437          329 --------CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSY-TRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVV  399 (510)
Q Consensus       329 --------~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~-~~D~~~~VTihhN~F~~~~~qR~PRvR~G~~HVv  399 (510)
                              ..||++|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +|+.||+||+|||.+||+
T Consensus       166 ~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvy  244 (345)
T COG3866         166 GSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVY  244 (345)
T ss_pred             ccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEe
Confidence                    7899999999999999999999999999999999984 457899999999999 799999999999999999


Q ss_pred             cceecCCc--ceeeecCCCceeEEeccEEeCCCCcccccccccccccccccCCCeeeccCceEeeCeEEecCCCC-----
Q 010437          400 NNDYTHWE--MYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAG-----  472 (510)
Q Consensus       400 NN~y~nw~--~YAIGgs~~~tI~seGNyF~a~~~~~~kevTkr~~~~~~~w~~w~w~s~GD~~lNGa~f~~Sg~~-----  472 (510)
                      ||||....  .||++.+..++|++|+|||+....+...-=|++.   .++|.   .       -+|++|..++..     
T Consensus       245 NNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~---~GY~~---~-------d~gsy~~~s~~~~~~~~  311 (345)
T COG3866         245 NNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT---SGYAN---Q-------DSGSYLNSSKSMSVRAG  311 (345)
T ss_pred             ccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc---cceEE---e-------ccCceecccCCcccccC
Confidence            99999665  4566655559999999999997544321112221   12211   1       335555555532     


Q ss_pred             -CCCCCCCCcccccCCCCccccc-ccccccC
Q 010437          473 -ASASYARASSLGAKSSSMVGSI-TSGAGAL  501 (510)
Q Consensus       473 -~~~~y~~~~~~~~~~~s~v~~l-t~~AG~l  501 (510)
                       ....+...|+|.++|.+.|++. |++||+-
T Consensus       312 G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGaG  342 (345)
T COG3866         312 GVTWNPSSYYSYTVDPPEDVKSFVTNYAGAG  342 (345)
T ss_pred             CccCCCCCCcccccCChHHhhhhhhccccce
Confidence             2345677889999999988865 9999964

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 8e-94
3zsc_A340 Catalytic Function And Substrate Recognition Of The 2e-16
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 8e-15
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 2e-12
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 3e-12
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 4e-12
3krg_A399 Structural Insights Into Substrate Specificity And 6e-12
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 9e-12
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 1e-11
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 3e-11
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 2e-09
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 2e-09
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 2e-09
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 3e-06
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 1e-05
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 3e-05
1qcx_A359 Pectin Lyase B Length = 359 2e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  340 bits (873), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 166/314 (52%), Positives = 217/314 (69%), Gaps = 14/314 (4%)
Query: 161 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRH 220
           NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTS-TDDNPVNPTPGTLRY 60
Query: 221 AVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHG 279
              ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ NGG C+ ++ V++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 280 LHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGL 333
           LH+H C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS C+DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 334 VDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRH 393
           +D  +GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 394 GYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWN 452
           G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   + S    W 
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWV 295
Query: 453 WRSEGDLLLNGAYF 466
           WRS  D  +NGAYF
Sbjct: 296 WRSTRDAFINGAYF 309
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure
>pdb|1QCX|A Chain A, Pectin Lyase B Length = 359 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-144
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 3e-97
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 1e-90
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 1e-85
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 7e-84
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 9e-74
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 1e-72
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 5e-70
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 2e-69
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 2e-68
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 4e-61
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-05
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 4e-05
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-04
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-04
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-04
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 4e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  417 bits (1073), Expect = e-144
 Identities = 170/346 (49%), Positives = 227/346 (65%), Gaps = 5/346 (1%)

Query: 161 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRH 220
           NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 221 AVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHG 279
              ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ NGG C+ ++ V++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 280 LHVHDCKPTGNAMVRSSPTHYGW-RTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVM 338
           LH+H C  +    V  S +         DGDAI++   ++ WIDHNSLS C+DGL+D  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 339 GSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHV 398
           GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 399 VNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAA-SQWKGWNWRSEG 457
            NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   + S    W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 458 DLLLNGAYFTPSGAGASAS-YARASSLGAKSSSMVGSITSGAGALT 502
           D  +NGAYF  SG     + Y    +   ++ +    +T  AG +T
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT 346
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.46
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.44
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.3
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.22
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.06
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.06
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.05
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.96
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.94
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.91
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.91
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.89
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.87
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.86
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.83
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.72
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.7
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.65
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.62
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.61
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.54
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.35
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.25
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.19
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.13
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.08
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.06
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.06
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.79
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.66
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.58
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.41
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.38
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 96.36
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.12
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.06
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.91
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.88
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.84
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 95.83
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.3
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 94.93
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 94.63
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.61
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.51
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 94.42
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.12
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 93.92
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 91.55
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 90.71
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 84.91
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 82.98
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=1.3e-102  Score=799.60  Aligned_cols=342  Identities=49%  Similarity=0.905  Sum_probs=326.8

Q ss_pred             CCCCccccccccccccccccccccccccccccccCCCCeEEEEcCCCCCCCCCCCCchhhhhhcCCCCeEEEEeeeeEEE
Q 010437          160 GNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQ  239 (510)
Q Consensus       160 ~npid~cwrc~~~w~~~rq~LA~~A~GFG~~ttGGrgG~vy~VTnl~Ddd~vnp~pGTLR~Av~q~~Pr~IVF~~sg~I~  239 (510)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+||++++|+||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999866 6899999999999999999999999999999


Q ss_pred             eCceEEecCCeEEEeeCcceEEec-CceEEEEccccEEEEeeEEeecccCCCCcc-ccCCCccCCccccCCCeEEeeCCc
Q 010437          240 LKQELIVNSFKTIDGRGANVHIAN-GGCITIQFVTNVIIHGLHVHDCKPTGNAMV-RSSPTHYGWRTVADGDAISIFGSS  317 (510)
Q Consensus       240 L~~~L~I~SnkTI~GqGA~~~I~~-G~gI~i~~asNVIIRnLrI~~~~pg~~g~i-r~s~~h~gwr~~sdgDaIsI~gs~  317 (510)
                      |+++|+|+|||||+|||++++|.+ |+||+++.++|||||||+|+++.|.++++| |+++.|++++...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999985 689999999999999999999998887777 999999998888999999999999


Q ss_pred             eEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceeecceEE
Q 010437          318 HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFH  397 (510)
Q Consensus       318 nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR~G~~H  397 (510)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+++.|+.++||||||+|++++.+||||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999999888889999999999966999999999999999


Q ss_pred             EEcceecCCcceeeecCCCceeEEeccEEeCCCCccccccccccccc-ccccCCCeeeccCceEeeCeEEecCCCCCCC-
Q 010437          398 VVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTA-ASQWKGWNWRSEGDLLLNGAYFTPSGAGASA-  475 (510)
Q Consensus       398 VvNN~y~nw~~YAIGgs~~~tI~seGNyF~a~~~~~~kevTkr~~~~-~~~w~~w~w~s~GD~~lNGa~f~~Sg~~~~~-  475 (510)
                      ++||||++|.+|++++++++++++|||||++++++..|++|+|.+++ +.+|++|+|+++||+|+|||+|++||.+.+. 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999998776 6789999999999999999999999987654 


Q ss_pred             CCCCCcccccCCCCcccccccccccCC
Q 010437          476 SYARASSLGAKSSSMVGSITSGAGALT  502 (510)
Q Consensus       476 ~y~~~~~~~~~~~s~v~~lt~~AG~l~  502 (510)
                      +|+++++|+++|+++|++||++||+|.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            599999999999999999999999994
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 510
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-147
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 4e-86
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 4e-71
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 8e-69
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-63
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-40
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 9e-05
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  422 bits (1086), Expect = e-147
 Identities = 169/346 (48%), Positives = 225/346 (65%), Gaps = 5/346 (1%)

Query: 161 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRH 220
           NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 221 AVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIAN-GGCITIQFVTNVIIHG 279
              ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ N G C+ ++ V++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 280 LHVHDCKPTGNAMVRSSP-THYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVM 338
           LH+H C  +    V  S           DGDAI++   ++ WIDHNSLS C+DGL+D  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 339 GSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHV 398
           GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 399 VNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAA-SQWKGWNWRSEG 457
            NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   + S    W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 458 DLLLNGAYFTPSGAGASAS-YARASSLGAKSSSMVGSITSGAGALT 502
           D  +NGAYF  SG     + Y    +   ++ +    +T  AG +T
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT 346
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.06
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.03
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.03
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.7
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.69
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.68
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.58
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.45
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.32
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.3
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.27
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.15
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.13
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.42
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.41
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.38
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.3
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.1
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.79
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.22
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 94.85
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 94.79
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.67
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 94.64
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 92.91
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 92.36
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 92.16
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 92.14
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 91.34
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=9.3e-96  Score=745.04  Aligned_cols=342  Identities=49%  Similarity=0.902  Sum_probs=311.7

Q ss_pred             CCCCccccccccccccccccccccccccccccccCCCCeEEEEcCCCCCCCCCCCCchhhhhhcCCCCeEEEEeeeeEEE
Q 010437          160 GNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQ  239 (510)
Q Consensus       160 ~npid~cwrc~~~w~~~rq~LA~~A~GFG~~ttGGrgG~vy~VTnl~Ddd~vnp~pGTLR~Av~q~~Pr~IVF~~sg~I~  239 (510)
                      .||||+||||||||+.+||+||+||+|||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            399999999999999999999999999999999999999999999977 6889999999999999999999999999999


Q ss_pred             eCceEEecCCeEEEeeCcceEEec-CceEEEEccccEEEEeeEEeecccCCCCccccCC-CccCCccccCCCeEEeeCCc
Q 010437          240 LKQELIVNSFKTIDGRGANVHIAN-GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSP-THYGWRTVADGDAISIFGSS  317 (510)
Q Consensus       240 L~~~L~I~SnkTI~GqGA~~~I~~-G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~-~h~gwr~~sdgDaIsI~gs~  317 (510)
                      |+++|.|+|||||+|||+|++|.. |.+|.++.++|||||||+||++.+...+.++..+ .+.+.+...++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999873 5679999999999999999998776554433222 12222345789999999999


Q ss_pred             eEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceeecceEE
Q 010437          318 HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFH  397 (510)
Q Consensus       318 nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR~G~~H  397 (510)
                      |||||||+|+|+.||+||+++++++||||||+|++|+|++|+|+++....++.++||||||+|.++..+|+|++|+|.+|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999988777788999999999987788999999999999


Q ss_pred             EEcceecCCcceeeecCCCceeEEeccEEeCCCCcccccccccccc-cccccCCCeeeccCceEeeCeEEecCCCCCC-C
Q 010437          398 VVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDT-AASQWKGWNWRSEGDLLLNGAYFTPSGAGAS-A  475 (510)
Q Consensus       398 VvNN~y~nw~~YAIGgs~~~tI~seGNyF~a~~~~~~kevTkr~~~-~~~~w~~w~w~s~GD~~lNGa~f~~Sg~~~~-~  475 (510)
                      ++||||++|..|++++++++++++|||||++++.+..|+++++... ...++++|+|++++|+++||++|.++|.... .
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            9999999999999999999999999999999999999999988654 3456899999999999999999999987643 4


Q ss_pred             CCCCCcccccCCCCcccccccccccCC
Q 010437          476 SYARASSLGAKSSSMVGSITSGAGALT  502 (510)
Q Consensus       476 ~y~~~~~~~~~~~s~v~~lt~~AG~l~  502 (510)
                      .|.++++|++.|++.|++|++.||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            688899999999999999999999995
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure